RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3650
(435 letters)
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 93.5 bits (232), Expect = 1e-21
Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 25/227 (11%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
V+ P +E + + + +E++ I + I +
Sbjct: 3 VVFPFKHEHPEVLL---HNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTP 59
Query: 264 LKPRK----------KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMI-KLQQ 311
+ R K G+ TA + L+ I DAD+ S P +I +
Sbjct: 60 VSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF 119
Query: 312 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE 371
L R + W R + + G L +++V
Sbjct: 120 GYGLVRHYFPRASTDAMI-TWMITRTGFALLWP----HTELSWIEQPLGGELLMRREVAA 174
Query: 372 NLVSSC---VSKGYVFQMEMVIRARQYNYTIGEVPI--SFVDRVYGE 413
L + Q +I E I R+YG
Sbjct: 175 MLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGG 221
Score = 82.3 bits (203), Expect = 7e-18
Identities = 38/270 (14%), Positives = 67/270 (24%), Gaps = 28/270 (10%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK----------KKLGLGTAYMHGLK 57
+E++ I + I + + R K G+ TA + L+
Sbjct: 29 HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLE 88
Query: 58 YATGNFIIIMDADL-SHHPKFIPEMI-KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVS 115
I DAD+ S P +I + L R + W R +
Sbjct: 89 ETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMI-TWMITRTGFA 147
Query: 116 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC---VSKGYVFQMEMVIRARQYNY 172
+ G L +++V L + Q
Sbjct: 148 LLWP----HTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGV 203
Query: 173 TIGEVPI--SFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGN 230
+I E I R+ + + + + + +E P I
Sbjct: 204 SIYECYIPEGKAHRLYGGLDDLRT--MLVECFAAIQSLQHEVVGQPAIHRQE----HPHR 257
Query: 231 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
P I + TL Q + E
Sbjct: 258 VPVHIAERVGYDVEATLHRLMQHWTPRQVE 287
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 69.7 bits (169), Expect = 4e-14
Identities = 17/172 (9%), Positives = 48/172 (27%), Gaps = 11/172 (6%)
Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
+ +T+++ TYN + L ++ +++IV+ + + + G
Sbjct: 3 DSFTLIMQTYNRTDLLLRLLNHYQAV----PSLHKVIVVWNNVGEKGPEELWNS---LGP 55
Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
I + + + + N ++++D D + + + QQ ++
Sbjct: 56 HPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIG 115
Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE 371
S + + + LE
Sbjct: 116 FVPRK----HVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKYLE 163
Score = 52.3 bits (124), Expect = 3e-08
Identities = 12/142 (8%), Positives = 35/142 (24%), Gaps = 7/142 (4%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
+++IV+ + + + G I + + + + N +
Sbjct: 29 PSLHKVIVVWNNVGEKGPEELWNS---LGPHPIPVIFKPQTANKMRNRLQVFPEVETNAV 85
Query: 65 IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 124
+++D D + + + QQ ++
Sbjct: 86 LMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRK----HVSTSSGIYSYGGFELQTPGP 141
Query: 125 LLRPGVSDLTGSFRLYKKQVLE 146
S + + + LE
Sbjct: 142 GNGDQYSMVLIGASFFNSKYLE 163
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 54.6 bits (130), Expect = 7e-09
Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 23/233 (9%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDE--GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
+V++ +NE + ++ + ++ + EI+++DD S L +
Sbjct: 25 SVVIVFHNEAWS--TLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKV 82
Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
+ + +++ GL A + G + G I +DA ++ ++ + + VV
Sbjct: 83 PVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 142
Query: 321 TR-----------------YVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363
Y G + + L + G
Sbjct: 143 IIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLF 202
Query: 364 LYKKQVLENL--VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGES 414
+ + + + + +E+ R Q T+ V S V V+ ++
Sbjct: 203 SIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKA 255
Score = 45.3 bits (106), Expect = 8e-06
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 19/197 (9%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
+ EI+++DD S L + + + +++ GL A + G + G I
Sbjct: 52 HMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVI 111
Query: 65 IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR-----------------YVGTGGVYGW 107
+DA ++ ++ + + VV Y G +
Sbjct: 112 TFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNF 171
Query: 108 DFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL--VSSCVSKGYVFQMEMVI 165
+ L + G + + + + + +E+
Sbjct: 172 RWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISF 231
Query: 166 RARQYNYTIGEVPISFV 182
R Q T+ V S V
Sbjct: 232 RIWQCGGTLEIVTCSHV 248
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 49.0 bits (115), Expect = 3e-07
Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 3/173 (1%)
Query: 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
K +V++ +YN+ + + I+ + + +E+ ++DD S + TL+ + +
Sbjct: 2 KVSVIMTSYNKSDYVA---KSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVR 58
Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
K L + L+ LD
Sbjct: 59 FYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPE 118
Query: 321 TRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373
+ + + + + + + + +++ VLE +
Sbjct: 119 KAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAIDHCSVMHRYSVLEKV 171
Score = 37.4 bits (85), Expect = 0.002
Identities = 14/142 (9%), Positives = 36/142 (25%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
+E+ ++DD S + TL+ + + K L
Sbjct: 30 DFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEG 89
Query: 67 MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL 126
+ L+ LD + + + + + + +
Sbjct: 90 EYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVT 149
Query: 127 RPGVSDLTGSFRLYKKQVLENL 148
+ +++ VLE +
Sbjct: 150 WNAPCAIDHCSVMHRYSVLEKV 171
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 271
Score = 32.7 bits (74), Expect = 0.071
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD 244
+K +++P N +E+L +Y + + Y I VI+
Sbjct: 48 PHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 93
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 343
Score = 29.5 bits (66), Expect = 0.70
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 20/140 (14%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY------ 257
+L+ + + + + + Y + IIV D + T S
Sbjct: 6 ILVIACD-RSTVRRCLDKLLHY-RPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQP 63
Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYA--------TGNFIIIMDADLSHHPKFIPEMI-- 307
I ++P +K ++A ++++ DL P F
Sbjct: 64 DLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 123
Query: 308 --KLQQQENLDVVTGTRYVG 325
L+ +L V+ G
Sbjct: 124 YPLLKADPSLWCVSAWNDNG 143
Score = 29.5 bits (66), Expect = 0.86
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 18/116 (15%)
Query: 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIY------GSEKIVLKPRKKKLGLGTAYMHGL 56
+ IIV D + T S I ++P +K
Sbjct: 28 PSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHY 87
Query: 57 KYA--------TGNFIIIMDADLSHHPKFIPEMI----KLQQQENLDVVTGTRYVG 100
++A ++++ DL P F L+ +L V+ G
Sbjct: 88 RWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNG 143
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 28.6 bits (64), Expect = 1.5
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL 264
LLP Y++ P+I Y ++ M G EI++I S +G +
Sbjct: 26 LLPVYDK----PMIYYPLSTLMLAGI--REILIISTPQDTPRFQQLLGDGSNWGL-DLQY 78
Query: 265 KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK 308
+ GL A++ G + + ++ D ++ E++
Sbjct: 79 AVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLG 122
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein
hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId:
5833]}
Length = 313
Score = 28.3 bits (63), Expect = 1.6
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 23/122 (18%)
Query: 109 FKRKLVSRGANYLTQLLLRPGVSD--LTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR 166
K ++ + GVS+ TG RL K L+ + ++ +
Sbjct: 173 LKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDH 232
Query: 167 ARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYM 226
+FV F Q D +NK + VYL+ K++
Sbjct: 233 P------------AFVMSFSFCNQTFAQLDLWQNK---------DTNKYENKVYLLPKHL 271
Query: 227 DE 228
DE
Sbjct: 272 DE 273
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 28.1 bits (61), Expect = 2.4
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 177 VPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDE 228
VP++ V + G +L LP+ V + E
Sbjct: 471 VPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQE 522
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 27.1 bits (60), Expect = 4.8
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 181 FVDRVVFTTQAIMSG-DSVKNKYTVLLPTYNEKENLP 216
++ +V Q IM + + + T ++ +
Sbjct: 301 ALEAMVVDVQCIMPSLPRIAECFHTQIITTDKHNKIS 337
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
51453]}
Length = 314
Score = 26.8 bits (58), Expect = 6.1
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 9/115 (7%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQS-----IYGSEKIVLKPRKKKLGLGTAYMHGLKYA 59
+ Y + IDD + G + + K L LG G
Sbjct: 45 DAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAGTATC 104
Query: 60 TGN--FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-WDFKR 111
G + D D + + + +K YV +
Sbjct: 105 AGYPASLGYEDVDAADFADWGVDYLKYDNCNVPSDWQ-DEYVACNPDFVKTGPNG 158
Score = 26.8 bits (58), Expect = 6.1
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 9/115 (7%)
Query: 230 NYPYEIIVIDDGSPDGTLDAAKQLQS-----IYGSEKIVLKPRKKKLGLGTAYMHGLKYA 284
+ Y + IDD + G + + K L LG G
Sbjct: 45 DAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAGTATC 104
Query: 285 TGN--FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-WDFKR 336
G + D D + + + +K YV +
Sbjct: 105 AGYPASLGYEDVDAADFADWGVDYLKYDNCNVPSDWQ-DEYVACNPDFVKTGPNG 158
>d1a6ja_ d.112.1.1 (A:) Nitrogen regulatory bacterial protein
IIa-ntr {Escherichia coli [TaxId: 562]}
Length = 150
Score = 25.7 bits (56), Expect = 7.5
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 21/110 (19%)
Query: 141 KKQVLENLV-----SSCVSKGYVFQMEMVIRARQYNYTIGE---VPISFVDRVVFTTQAI 192
KK+ LE + + VF+ ++ R + + IG +P ++ +
Sbjct: 21 KKRALEIISELAAKQLSLPPQVVFEA-ILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGV 79
Query: 193 ------------MSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGN 230
+ V + +L+P K +L + + + D+
Sbjct: 80 FVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTI 129
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.4 bits (58), Expect = 7.8
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 181 FVDRVVFTTQAIMSG-DSVKNKYTVLLPTYNEKENLP 216
+D + Q IM +V Y + T + +P
Sbjct: 344 AIDAMCVDVQCIMPSISAVAECYHTRIITTADNAKIP 380
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.403
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,677,677
Number of extensions: 81223
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 20
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)