BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3651
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/293 (57%), Positives = 210/293 (71%), Gaps = 17/293 (5%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
G +VL+DAR KL GIPWQ+ N H + F+N ++ F YV L +L
Sbjct: 82 GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 135
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
W D IR+AF RRSE+QLG+S++YF DN DRI + +Y PS +DIL ARKATKG
Sbjct: 136 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-------LNYFPSKQDILLARKATKG 188
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
I E VI IPF VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct: 189 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 248
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
ES NIF+TI+NN +F NVS ILFLNK DLL EK+++ SI +HFP+F+GDP ++ VQ
Sbjct: 249 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFKGDPHRLEDVQ 306
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
+L+ F +R+ KPLFHHFTTA+DTENI+ VF+AVK+TIL NL+D+MLQ
Sbjct: 307 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 359
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/298 (53%), Positives = 218/298 (73%), Gaps = 22/298 (7%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
GM+VL+DAR KL IPW ++ N +H +K+ FD +++R+F Y+
Sbjct: 80 GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 133
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+++LW+D I+ A++RR E+QLG+S++YF DN D++ DYIPS +DIL AR+
Sbjct: 134 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 186
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
TKGI E+ I N+PF VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++ SI ++F EFEGDP +
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 304
Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
+ VQ FL+ F+ +RD +++PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 305 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 362
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 324 bits (831), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 160/298 (53%), Positives = 218/298 (73%), Gaps = 22/298 (7%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
GM+VL+DAR KL IPW ++ N +H +K+ FD +++R+F Y+
Sbjct: 56 GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 109
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+++LW+D I+ A++RR E+QLG+S++YF DN D++ DYIPS +DIL AR+
Sbjct: 110 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 162
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
TKGI E+ I N+PF VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++ SI ++F EFEGDP +
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 280
Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
+ VQ FL+ F+ +RD +++PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 281 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 338
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 321 bits (823), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 159/298 (53%), Positives = 217/298 (72%), Gaps = 22/298 (7%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
GM+VL+DAR KL IPW ++ N +H +K+ FD +++R+F Y+
Sbjct: 56 GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 109
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+++LW+D I+ A++RR E+QLG+S++YF DN D++ DYIPS +DIL AR+
Sbjct: 110 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 162
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
TKGI E+ I N+PF VDVGG RS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++ SI ++F EFEGDP +
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 280
Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
+ VQ FL+ F+ +RD +++PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 281 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 338
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 253 bits (647), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 187/296 (63%), Gaps = 21/296 (7%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
GM+VL+DAR KL IPW ++ N +H +K+ FD +++R+F Y+
Sbjct: 59 GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 112
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+++LW+D I+ A++RR E+QLG+S++YF DN D++ DYIPS +DIL AR+
Sbjct: 113 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 165
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
TKGI E ++ F DVGGQRS+R+KWF+CF+ VT+I+F V+ S+YDQ L+EDR+
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
TNR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 283
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 284 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 339
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
F M+ +I A L IP++ + N HA+ + + D S + YVD +KSL
Sbjct: 78 FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 129
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
W+D I++ ++RR EYQL DS +Y+ ++ DR++ P Y+P+ +D+L R T G
Sbjct: 130 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 182
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
I E+ + ++ F VDVGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE NR+
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 242
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
ES+ +F TII F+N S ILFLNK DLL EK+ S + ++FPE++G +D QA +
Sbjct: 243 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAR 300
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
F+L F + D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 301 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 352
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
F M+ +I A L IP++ + N HA+ + + D S + YVD +KSL
Sbjct: 80 FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 131
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
W+D I++ ++RR EYQL DS +Y+ ++ DR++ P Y+P+ +D+L R T G
Sbjct: 132 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 184
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
I E+ + ++ F VDVGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE NR+
Sbjct: 185 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 244
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
ES+ +F TII F+N S ILFLNK DLL EK+ S + ++FPE++G +D QA +
Sbjct: 245 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRDAQAAR 302
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
F+L F + D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 303 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 354
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
F M+ +I A L IP++ + N HA+ + + D S + YVD +KSL
Sbjct: 78 FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 129
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
W+D I++ ++RR EYQL DS +Y+ ++ DR++ P Y+P+ +D+L R T G
Sbjct: 130 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 182
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
I E+ + ++ F VDVGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE NR+
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 242
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
ES+ +F TII F+N S ILFLNK DLL EK+ S + ++FPE++G +D QA +
Sbjct: 243 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAR 300
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
F+L F + D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 301 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 352
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
F M+ +I A L IP++ + N HA+ + + D S + YVD +KSL
Sbjct: 52 FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 103
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
W+D I++ ++RR EYQL DS +Y+ ++ DR++ P Y+P+ +D+L R T G
Sbjct: 104 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 156
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
I E+ + ++ F VDVGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE NR+
Sbjct: 157 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 216
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
ES+ +F TII F+N S ILFLNK DLL EK+ S + ++FPE++G +D QA +
Sbjct: 217 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRDAQAAR 274
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
F+L F + D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 275 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 326
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/294 (41%), Positives = 179/294 (60%), Gaps = 21/294 (7%)
Query: 42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFD--NNTCIDSRLFSTYVDELK 99
F M+ +I A L IP++ + N HA+ + + D + D ++ +K
Sbjct: 72 FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA----IK 121
Query: 100 SLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
SLW+D I++ ++RR EYQL DS +Y+ ++ DR++ P Y+P+ +D+L T
Sbjct: 122 SLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVCVPT 174
Query: 160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTN 219
GI E+ + ++ F VDVGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE N
Sbjct: 175 TGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNEN 234
Query: 220 RLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQA 279
R+ ES+ +F TII F+N S ILFLNK DLL EK+ S + ++FPE++G +D QA
Sbjct: 235 RMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQA 292
Query: 280 VQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+ F+L F + D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 293 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 346
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 142/248 (57%), Gaps = 11/248 (4%)
Query: 87 DSRLFST-YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDY 145
D+ FS + + LW D I++ F R EYQL DS +Y+ D+ DRI DY
Sbjct: 95 DTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDRIGA-------GDY 147
Query: 146 IPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS 205
P+ +DIL R T GI E N+ F DVGGQRS+R+KW CF+ VT+I+F V+
Sbjct: 148 QPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVAL 207
Query: 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAE 265
S YDQ L ED TNR+HES +FD+I NN F + S ILFLNK DL EK++ S +I
Sbjct: 208 SGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTIC- 266
Query: 266 HFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325
FPE+ G + ++ F++ R K ++ H T A DT NI++VF+AV + I+
Sbjct: 267 -FPEYPG-SNTYEDAAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIA 324
Query: 326 RNLRDLML 333
NLR L
Sbjct: 325 NNLRGCGL 332
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 100 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 152
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 153 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 212
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 213 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 270
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 271 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 326
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 103 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 155
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 156 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 215
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 216 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 273
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 274 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 329
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 101 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 153
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 154 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 213
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 214 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 271
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 272 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 327
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 96 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 148
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 149 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 208
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 209 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 266
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 267 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 322
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 98 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 150
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 151 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 210
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 211 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 268
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 269 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 324
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 97 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 149
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 150 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 209
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 210 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 267
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 268 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 323
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 98 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 150
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 151 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 210
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 211 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 268
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 269 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 324
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 102 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 154
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 155 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 214
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 215 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 272
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 273 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 328
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 179
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 239
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 240 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 297
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N+ VF+AV + I+ NL+D L
Sbjct: 298 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVCFVFDAVTDVIIKNNLKDCGL 353
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 129 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 181
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 182 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 241
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 242 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 299
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL D L
Sbjct: 300 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLPDCGL 355
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 133 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 185
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 186 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 245
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 246 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 303
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A D +N++ VF+AV + I+ NL+D L
Sbjct: 304 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDAKNVQFVFDAVTDVIIKNNLKDCGL 359
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 179
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DV GQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 239
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 240 MNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 297
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 298 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 353
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVG QRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 179
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DV GQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 239
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 240 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 297
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 298 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 353
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGG RS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EY L DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 101 IKRLWKDSGVQACFNRSREYLLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 153
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 154 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 213
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 214 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 271
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 272 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 327
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRIS+ +YIP+ +D+L R
Sbjct: 96 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 148
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 149 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 208
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 209 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 266
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + +R + K ++ HFT A DT+N++ VF+AV + I+ NL++ L
Sbjct: 267 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 322
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRIS+ +YIP+ +D+L R
Sbjct: 103 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 155
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 156 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 215
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 216 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 273
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + +R + K ++ HFT A DT+N++ VF+AV + I+ NL++ L
Sbjct: 274 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
+ + K+LW+D +R +ER +EYQL D QYF D D I + DY+PS++D+L
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 198
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
R T GI E + + F DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ +
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
ED +TNRL E+ N+F +I NN R +S ILFLNK DLLAEK+ K+ I ++FPEF
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
+ P+ + + YF D + + HFT AVDTENI+ VFN
Sbjct: 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378
Query: 319 VKNTILHRNLRDLML 333
++ I +LR L
Sbjct: 379 CRDIIQRMHLRQYEL 393
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
+ + K+LW+D +R +ER +EYQL D QYF D D I + DY+PS++D+L
Sbjct: 132 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 184
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
R T GI E + + F DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ +
Sbjct: 185 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 244
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
ED +TNRL E+ N+F +I NN R +S ILFLNK DLLAEK+ K+ I ++FPEF
Sbjct: 245 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 304
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
+ P+ + + YF D + + HFT AVDTENI+ VFN
Sbjct: 305 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 364
Query: 319 VKNTILHRNLRDLML 333
++ I +LR L
Sbjct: 365 CRDIIQRMHLRQYEL 379
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
+ + K+LW+D +R +ER +EYQL D QYF D D I + DY+PS++D+L
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 198
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
R T GI E + + F DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ +
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
ED +TNRL E+ N+F +I NN R +S ILFLNK DLLAEK+ K+ I ++FPEF
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
+ P+ + + YF D + + HFT AVDTENI+ VFN
Sbjct: 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378
Query: 319 VKNTILHRNLRDLML 333
++ I +LR L
Sbjct: 379 CRDIIQRMHLRQYEL 393
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
+ + K+LW+D +R +ER +EYQL D QYF D D I + DY+PS++D+L
Sbjct: 132 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 184
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
R T GI E + + F DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ +
Sbjct: 185 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 244
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
ED +TNRL E+ N+F +I NN R +S ILFLNK DLLAEK+ K+ I ++FPEF
Sbjct: 245 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 304
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
+ P+ + + YF D + + HFT AVDTENI+ VFN
Sbjct: 305 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 364
Query: 319 VKNTILHRNLRDLML 333
++ I +LR L
Sbjct: 365 CRDIIQRMHLRQYEL 379
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
+ + K+LW+D +R +ER +EYQL D QYF D D I + DY+PS++D+L
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 198
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
R T GI E + + F DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ +
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
ED +TNRL E+ N+F +I NN R +S ILFLNK DLLAEK+ K+ I ++FPEF
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
+ P+ + + YF D + + HFT AVDTENI+ VFN
Sbjct: 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378
Query: 319 VKNTILHRNLRDLML 333
++ I +LR L
Sbjct: 379 CRDIIQRMHLRQYEL 393
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 9/233 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRIS+ +YIP+ +D+L R
Sbjct: 126 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 179 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 239 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 330
+A + +R + K ++ HFT A DT+N++ VF+AV + I+ NL++
Sbjct: 297 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 349
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 141/238 (59%), Gaps = 9/238 (3%)
Query: 96 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
D ++ LW D I+ F+R SEYQL DS Y+ + +R+ +P Y+P+ +D+L +
Sbjct: 96 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLV----TP---GYVPTEQDVLRS 148
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
R T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 149 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 208
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 209 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNT 266
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + + + R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 267 YEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 324
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 9/236 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EY L DS Y+ ++ DRIS+ +YIP+ +D+L R
Sbjct: 103 IKRLWRDGGVQACFSRSREYLLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 155
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 156 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 215
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 216 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 273
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + +R + K ++ HFT A DT+N++ VF+AV + I+ NL++ L
Sbjct: 274 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 141/238 (59%), Gaps = 9/238 (3%)
Query: 96 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
D ++ LW D I+ F+R SEYQL DS Y+ + +R+ + Y+P+ +D+L +
Sbjct: 127 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL-------VTPGYVPTEQDVLRS 179
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
R T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 180 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 239
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
NR+HES ++F++I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 240 EEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNT 297
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + + + R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 298 YEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 355
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 95 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 147
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 148 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 207
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 208 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 265
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324
+A + KR + K ++ HFT A DT+N++ VF+AV + I+
Sbjct: 266 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 312
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 9/238 (3%)
Query: 96 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
D ++ LW D I+ F+R SEYQL DS Y+ + +R+ + Y+P+ +D+L +
Sbjct: 121 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL-------VTPGYVPTEQDVLRS 173
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
R T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 174 RVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 233
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
NR HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 234 EEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNT 291
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+A + + + R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 292 YEEAGNYIKVQFLELNXRRDVKEIYSHXTCATDTQNVKFVFDAVTDIIIKENLKDCGL 349
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+K LW D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R
Sbjct: 96 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 148
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
T GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 149 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 208
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
NR+HES +FD+I NN F + S ILFLNK DL EK++ S +I +PE+ G
Sbjct: 209 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 266
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324
+A + KR + K ++ HFT + DT+N++ VF+AV + I+
Sbjct: 267 EAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVII 313
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 140/238 (58%), Gaps = 9/238 (3%)
Query: 96 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
D ++ LW D I+ F+R SEYQL DS Y+ + +R+ +P Y+P+ +D+L +
Sbjct: 95 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLV----TP---GYVPTEQDVLRS 147
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
R T GI E ++ F DVGGQRS+R+KW CF+ VT I+F+ + S YD LVED
Sbjct: 148 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVED 207
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
NR+HES ++F++I N+ F S +LFLNK D+ +EK++ + SI FP++ G
Sbjct: 208 DEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVFSEKIKKAHLSIC--FPDYNGPNT 265
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
A + + + R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 266 YEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 323
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 124/239 (51%), Gaps = 27/239 (11%)
Query: 95 VDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILH 154
V ++++LW D I+ +E +++QL D +Y F+N RI+ +DY+P+ +D++H
Sbjct: 91 VGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAX-------EDYVPTEEDLIH 143
Query: 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE 214
R T GI E+ V+ +IPF +DVGGQRS+R+ W F V +F+ S +EYD L E
Sbjct: 144 NRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYE 203
Query: 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDP 274
D T+RL ES +F I N + ++FLNK DL EKL +K + FPE+ G
Sbjct: 204 DGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDLFEEKL--TKVPLNTIFPEYTGGD 261
Query: 275 QDMQAVQTFLLNYFKAVKRDEK-----------------KPLFHHFTTAVDTENIKIVF 316
+ Q ++ F + E+ + ++ + T A D NIK VF
Sbjct: 262 NAVXGAQ-YIQQLFTGKLQTEEXNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 22/260 (8%)
Query: 89 RLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPS 148
RL + +++LW D AI++ R +E Q+ D +Y +N R+S +N YIP+
Sbjct: 101 RLTKDIAEGIETLWKDPAIQETXARGNELQVPDXTKYLMENLKRLSD-IN------YIPT 153
Query: 149 NKDILHARKATKGITE--FTIVISNIP----FLFVDVGGQRSQRRKWFQCFDSVTSILFL 202
+D+L+AR T G+ E F+ V N + DVGGQR++RRKW F+ VT+++F
Sbjct: 154 KEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFC 213
Query: 203 VSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTS 262
+ SEYDQTL ED + NR+ E++ +FD ++ F SF+LFLNK D+ +K+ +
Sbjct: 214 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLN 273
Query: 263 IAEHFPEFE---GDPQDMQAVQTFLLNYFKAVKRDEKKP-----LFHHF-TTAVDTENIK 313
+ E F +++ Q+++ F+ F+ + P +F + TTA+D + +K
Sbjct: 274 VCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK 333
Query: 314 IVFNAVKNTILHRNLRDLML 333
F V T+ RNL + L
Sbjct: 334 KTFKLVDETLRRRNLLEAGL 353
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W + + ++F+V S+ DR
Sbjct: 31 TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSN--------DR-- 80
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
+R+ E+R + ++N RN ++++F NK DL
Sbjct: 81 SRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 113
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ 210
D L + T T + I NI F D+GG RR W F V I+FLV +++ +
Sbjct: 24 DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE- 82
Query: 211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250
R E+R D + N ++V F++ NK D
Sbjct: 83 ---------RFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W + + ++F+V S+ DR
Sbjct: 48 TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSN--------DR-- 97
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
+R+ E+R + ++N RN ++++F NK DL
Sbjct: 98 SRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ 210
D L + T T + I NI F D+GG RR W F V I+FLV +++ +
Sbjct: 46 DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE- 104
Query: 211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250
R E+R D + N ++V F++ NK D
Sbjct: 105 ---------RFDEARVELDALFNIAELKDVPFVILGNKID 135
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W + + ++F++ S+ DR
Sbjct: 48 TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSN--------DR-- 97
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
+R+ E+R + ++N RN +++F NK DL
Sbjct: 98 SRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W + + +I+F+V S++ D
Sbjct: 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRD--------- 98
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R ++N RN ++F NK DL
Sbjct: 99 -RIGEAREELMKMLNEDEMRNAILLVFANKHDL 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGGQ R W + ++F+V ++ D
Sbjct: 353 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 403
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 404 -RIDEARQELHRIINDREMRDAIILIFANKQDL 435
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGGQ R W + ++F+V ++ D
Sbjct: 31 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 82 -RIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGGQ R W + ++F+V ++ D
Sbjct: 31 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 82 -RIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGGQ R W + ++F+V ++ D
Sbjct: 43 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 93
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 94 -RIDEARQELHRIINDREMRDAIILIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGGQ R W + ++F+V ++ D
Sbjct: 44 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 94
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 95 -RIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ D
Sbjct: 51 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--------- 101
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R+ ++N R+ ++F NK DL
Sbjct: 102 -RVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGGQ R W + ++F+V ++ D
Sbjct: 31 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 82 -RIDEARQELHRIINDREXRDAIILIFANKQDL 113
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
+ I+ + F D+GG RR W ++ I+FLV ++++ RL ES+
Sbjct: 61 LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKE 110
Query: 227 IFDTIINNVIFRNVSFILFLNKTD 250
D+++ + NV ++ NK D
Sbjct: 111 ELDSLMTDETIANVPILILGNKID 134
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
+ I+ + F D+GG RR W ++ I+FLV ++++ RL ES+
Sbjct: 55 LTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKE 104
Query: 227 IFDTIINNVIFRNVSFILFLNKTD 250
D+++ + NV ++ NK D
Sbjct: 105 ELDSLMTDETIANVPILILGNKID 128
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
+ I+ + F D+GG RR W ++ I+FLV ++++ RL ES+
Sbjct: 64 LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKE 113
Query: 227 IFDTIINNVIFRNVSFILFLNKTD 250
D+++ + NV ++ NK D
Sbjct: 114 ELDSLMTDETIANVPILILGNKID 137
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230
NI F DVGGQ R W + + ++F+V S+ DR +R+ E+R +
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSN--------DR--SRIGEAREVMQR 109
Query: 231 IINNVIFRNVSFILFLNKTDL 251
++N N ++++F NK DL
Sbjct: 110 MLNEDELCNAAWLVFANKQDL 130
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGG R W + ++F+V ++ D
Sbjct: 34 TVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 84
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 85 -RIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGG R W + ++F+V ++ D
Sbjct: 33 TVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 83
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 84 -RIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
+ I+ + F D+GG RR W ++ I+FLV +++ +RL ES+
Sbjct: 74 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADH----------SRLVESKV 123
Query: 227 IFDTIINNVIFRNVSFILFLNKTD----LLAEKLR 257
+ ++ + NV ++ NK D + EKLR
Sbjct: 124 ELNALMTDETISNVPILILGNKIDRTDAISEEKLR 158
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ N+ F DVGG R W + ++F+V ++ D
Sbjct: 44 TVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 94
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E+R IIN+ R+ ++F NK DL
Sbjct: 95 -RIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ +
Sbjct: 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE--------- 246
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R++E+R ++ R+ ++F NK DL
Sbjct: 247 -RVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ +
Sbjct: 31 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R++E+R ++ R+ ++F NK DL
Sbjct: 82 -RVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ +
Sbjct: 47 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE--------- 97
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R++E+R ++ R+ ++F NK DL
Sbjct: 98 -RVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ +
Sbjct: 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE--------- 98
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R++E+R ++ R+ ++F NK DL
Sbjct: 99 -RVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W + + ++F+V S++ +
Sbjct: 48 TIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRE--------- 98
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ ++R +IN ++ ++F NK DL
Sbjct: 99 -RIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ +
Sbjct: 60 TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE--------- 110
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ ES + ++ R+ ++F NK D+
Sbjct: 111 -RVQESADELQKMLQEDELRDAVLLVFANKQDM 142
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
IVI+N FL D+GGQ S R W + + ++ +V S++ + R+ +R
Sbjct: 61 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE----------RISVTRE 110
Query: 227 IFDTIINNVIFRNVSFILFLNKTDL 251
++ + R ++F NK D+
Sbjct: 111 ELYKMLAHEDLRKAGLLIFANKQDV 135
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL--HES 224
IV+ N FL D+GGQ S R W + + I+ +V S + ++ + R+ HE
Sbjct: 55 IVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHED 114
Query: 225 RNIFDTIINNVIFRNVSFILFLNKTDL 251
R + ++F NK D+
Sbjct: 115 ------------LRKAAVLIFANKQDM 129
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
IVI+N FL D+GGQ S R W + + ++ +V S+ DR R+ +R
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST--------DRE--RISVTRE 109
Query: 227 IFDTIINNVIFRNVSFILFLNKTDL 251
++ + R ++F NK D+
Sbjct: 110 ELYKMLAHEDLRKAGLLIFANKQDV 134
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 145 YIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS 204
Y S +++H T G IVI+N FL D+GGQ S R W + + ++ +V
Sbjct: 34 YQFSMNEVVHT-SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92
Query: 205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
S++ + R+ +R ++ + R ++F NK D+
Sbjct: 93 STDRE----------RISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
IVI+N FL D+GGQ S R W + + ++ +V S++ + R+ +R
Sbjct: 55 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE----------RISVTRE 104
Query: 227 IFDTIINNVIFRNVSFILFLNKTDL 251
++ + R ++F NK D+
Sbjct: 105 ELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGG R W F + ++F+V S++ +
Sbjct: 33 TIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRE--------- 83
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R++E+R ++ R+ ++F NK DL
Sbjct: 84 -RVNEAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
AT G T + F D+GG + R W +D++ +++F+V SS++ + V
Sbjct: 49 ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSE 108
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEK 255
+ + +I + V F+ F NK D K
Sbjct: 109 IQAMLKHEDIRRELPGG---GRVPFLFFANKMDAAGAK 143
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
DVGGQ+S R W F+S ++++V S+ DR+ R+ + + +++
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RMQDCQRELQSLLVEERL 117
Query: 238 RNVSFILFLNKTDL 251
+ ++F NK DL
Sbjct: 118 AGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
DVGGQ+S R W F+S ++++V S+ DR+ R+ + + +++
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RMQDCQRELQSLLVEERL 117
Query: 238 RNVSFILFLNKTDL 251
+ ++F NK DL
Sbjct: 118 AGATLLIFANKQDL 131
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
DVGGQ+S R W F+S ++++V S+ DR+ R+ + + +++
Sbjct: 66 DVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RMQDCQRELQSLLVEERL 115
Query: 238 RNVSFILFLNKTDL 251
+ ++F NK DL
Sbjct: 116 AGATLLIFANKQDL 129
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T G T+ NI F DVGGQ R W F + ++F+V S++ +
Sbjct: 48 TIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRE--------- 98
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R+ E + ++ R+ +LF NK DL
Sbjct: 99 -RIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
DVGGQ+S R W F+S ++++V S+ DR+ R + + +++
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RXQDCQRELQSLLVEERL 117
Query: 238 RNVSFILFLNKTDL 251
+ ++F NK DL
Sbjct: 118 AGATLLIFANKQDL 131
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD 229
S++ F D+ GQ R W + +I+F++ SS+ + +V ++ D
Sbjct: 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVV----------AKEELD 114
Query: 230 TIIN--NVIFRNVSFILFLNKTDL 251
T++N ++ R + + F NK DL
Sbjct: 115 TLLNHPDIKHRRIPILFFANKMDL 138
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 139 SPLFQDYIP--SNKDILHARKATKGITEFTIVISNI 172
SPL Q+Y+P S + +LH RKA+ + EF + + +
Sbjct: 446 SPLVQEYVPGHSGQFVLHMRKASGALLEFAKLAAAL 481
>pdb|3CWR|A Chain A, Crystal Structure Of Transcriptional Regulator Of Tetr
Family (Yp_425770.1) From Rhodospirillum Rubrum Atcc
11170 At 1.50 A Resolution
pdb|3CWR|B Chain B, Crystal Structure Of Transcriptional Regulator Of Tetr
Family (Yp_425770.1) From Rhodospirillum Rubrum Atcc
11170 At 1.50 A Resolution
Length = 208
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 263 IAEHFPEFEGDPQD-MQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311
IA FP FE DPQD A++ + + +AV E LF + D N
Sbjct: 73 IAPIFPGFEADPQDAAAALERIVYDIAQAVLSREAVSLFRXLASDADLRN 122
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
DVGG +S R W F+S ++++V S+ DR+ R+ + + +++
Sbjct: 51 DVGGLKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RMQDCQRELQSLLVEERL 100
Query: 238 RNVSFILFLNKTDL 251
+ ++F NK DL
Sbjct: 101 AGATLLIFANKQDL 114
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216
K T G T+ N+ D+GGQ S R W + +++F+V S++ D
Sbjct: 47 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD------- 99
Query: 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250
R+ + ++ ++ + ++F NK D
Sbjct: 100 ---RMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 121 DSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGI 162
D +YF +WD +RRV SP F++ + ++D L A A+ +
Sbjct: 268 DETEYFDKDWDHAARRVMSPPFRNKL--HQDSLWAGLASGSL 307
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
D+GGQR R W F++ +++++ S+ DR+ R E+ ++
Sbjct: 67 DIGGQRKIRPYWRSYFENTDILIYVIDSA--------DRK--RFEETGQELTELLEEEKL 116
Query: 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHF 267
V ++F NK DLL + IAE
Sbjct: 117 SCVPVLIFANKQDLLTA---APASEIAEGL 143
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
D+GGQR R W F++ +++++ S+ DR+ R E+ ++
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSA--------DRK--RFEETGQELTELLEEEKL 115
Query: 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHF 267
V ++F NK DLL + IAE
Sbjct: 116 SCVPVLIFANKQDLLTA---APASEIAEGL 142
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
D+GGQR R W F++ +++++ S+ DR+ R E+ ++
Sbjct: 54 DIGGQRKIRPYWRSYFENTDILIYVIDSA--------DRK--RFEETGQELTELLEEEKL 103
Query: 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHF 267
V ++F NK DLL + IAE
Sbjct: 104 SCVPVLIFANKQDLLTA---APASEIAEGL 130
>pdb|1NYS|A Chain A, Crystal Structure Of Activin A Bound To The Ecd Of
Actriib P41
pdb|1NYS|C Chain C, Crystal Structure Of Activin A Bound To The Ecd Of
Actriib P41
pdb|1NYU|A Chain A, Crystal Structure Of Activin A Bound To The Ecd Of
Actriib
pdb|1NYU|C Chain C, Crystal Structure Of Activin A Bound To The Ecd Of
Actriib
Length = 105
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 7 DGNCVETRACVF---HVRLYFSVECCCERHSGNNSFTSFP 43
D NC + + CV + ++YF CCCE + N FT P
Sbjct: 63 DFNCYDRQECVATEENPQVYF---CCCEGNFCNERFTHLP 99
>pdb|2H64|C Chain C, Crystal Structure Of A Ternary Ligand-Receptor Complex
Of Bmp-2
Length = 99
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 7 DGNCVETRACVF---HVRLYFSVECCCERHSGNNSFTSFP 43
D NC + + CV + ++YF CCCE + N FT P
Sbjct: 63 DFNCYDRQECVATEENPQVYF---CCCEGNFCNERFTHLP 99
>pdb|1S4Y|A Chain A, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|1S4Y|C Chain C, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
Length = 98
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 7 DGNCVETRACVF---HVRLYFSVECCCERHSGNNSFTSFP 43
D NC + + CV + ++YF CCCE + N FT P
Sbjct: 59 DFNCYDRQECVATEENPQVYF---CCCEGNFCNERFTHLP 95
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 230 TIINNVIFRNVSFILFLNKTDLLAEKL-------------RTSKTSIAEHFPEFEGDPQD 276
+I + I V ++LFLN+ +L EK+ + + IA E D
Sbjct: 30 ALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHD 89
Query: 277 MQAVQTFLLNYFKAVKRDEK---KPLFHHFTTAVDTENI--KIVFNAVKNTILHRNLRDL 331
++AV+ F+ K KR++ K H+ T+ D N+ A N ++ L +
Sbjct: 90 VKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKI 149
Query: 332 MLQ 334
ML+
Sbjct: 150 MLK 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,325,548
Number of Sequences: 62578
Number of extensions: 367839
Number of successful extensions: 1292
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 104
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)