Query psy3651
Match_columns 334
No_of_seqs 339 out of 2205
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 22:10:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082|consensus 100.0 4.1E-82 8.9E-87 598.4 20.9 304 13-334 51-354 (354)
2 KOG0085|consensus 100.0 4.6E-79 1E-83 539.3 9.5 302 13-333 57-358 (359)
3 KOG0099|consensus 100.0 2.4E-71 5.2E-76 497.2 16.7 307 13-334 58-379 (379)
4 cd00066 G-alpha G protein alph 100.0 3E-70 6.5E-75 521.2 22.6 299 14-330 19-317 (317)
5 smart00275 G_alpha G protein a 100.0 1.4E-69 3.1E-74 520.7 23.8 301 14-332 40-342 (342)
6 PF00503 G-alpha: G-protein al 100.0 4.6E-66 1E-70 505.5 17.2 293 14-323 77-389 (389)
7 KOG0071|consensus 99.9 4.5E-24 9.7E-29 175.8 9.8 133 155-322 44-176 (180)
8 KOG0070|consensus 99.9 8.7E-24 1.9E-28 182.3 11.5 134 157-325 46-179 (181)
9 PF00025 Arf: ADP-ribosylation 99.9 2.1E-21 4.5E-26 170.0 14.9 133 156-323 42-175 (175)
10 KOG0084|consensus 99.9 3.4E-21 7.3E-26 167.5 12.7 133 156-327 38-175 (205)
11 PLN00223 ADP-ribosylation fact 99.9 3.3E-21 7.1E-26 169.5 12.1 135 157-326 46-180 (181)
12 KOG0073|consensus 99.8 6.7E-21 1.5E-25 160.9 11.4 137 155-326 43-180 (185)
13 smart00177 ARF ARF-like small 99.8 4.4E-20 9.5E-25 161.1 12.5 131 158-323 43-173 (175)
14 cd04120 Rab12 Rab12 subfamily. 99.8 2.9E-19 6.4E-24 160.1 15.4 141 139-326 23-165 (202)
15 cd04149 Arf6 Arf6 subfamily. 99.8 5.9E-20 1.3E-24 159.4 10.4 130 157-321 38-167 (168)
16 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.3E-19 2.8E-24 155.6 11.7 130 157-321 29-158 (159)
17 KOG0075|consensus 99.8 1.3E-19 2.8E-24 150.6 10.1 133 156-323 49-181 (186)
18 KOG0092|consensus 99.8 3.6E-19 7.8E-24 154.4 12.8 145 130-327 22-170 (200)
19 PTZ00133 ADP-ribosylation fact 99.8 3.1E-19 6.8E-24 157.0 12.8 134 158-326 47-180 (182)
20 KOG0072|consensus 99.8 5.6E-20 1.2E-24 152.3 7.3 137 155-326 45-181 (182)
21 KOG0078|consensus 99.8 4.3E-19 9.2E-24 156.3 13.3 145 129-326 28-176 (207)
22 cd04158 ARD1 ARD1 subfamily. 99.8 1.4E-18 3.1E-23 150.4 12.9 135 157-326 28-163 (169)
23 KOG0094|consensus 99.8 6.3E-19 1.4E-23 153.1 10.3 132 157-326 52-187 (221)
24 cd01875 RhoG RhoG subfamily. 99.8 2.1E-18 4.4E-23 152.8 13.6 154 139-327 26-180 (191)
25 cd04121 Rab40 Rab40 subfamily. 99.8 2.9E-18 6.2E-23 152.1 14.5 116 171-326 54-169 (189)
26 cd04133 Rop_like Rop subfamily 99.8 1.1E-18 2.5E-23 153.0 11.4 149 138-324 23-173 (176)
27 PTZ00099 rab6; Provisional 99.8 3.4E-18 7.4E-23 149.9 14.3 138 138-325 2-143 (176)
28 KOG0076|consensus 99.8 4E-19 8.8E-24 151.5 7.5 184 97-326 4-189 (197)
29 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.5E-18 5.4E-23 148.8 12.1 133 157-321 28-166 (167)
30 smart00176 RAN Ran (Ras-relate 99.8 4E-18 8.6E-23 152.6 12.0 115 170-326 42-156 (200)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.3E-17 2.8E-22 145.2 14.0 140 139-326 25-166 (172)
32 cd04157 Arl6 Arl6 subfamily. 99.8 7.2E-18 1.6E-22 143.5 11.6 130 157-321 30-161 (162)
33 KOG0093|consensus 99.7 1.2E-17 2.6E-22 138.9 11.6 149 130-331 38-190 (193)
34 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.7E-17 3.7E-22 146.2 13.4 150 139-324 28-180 (182)
35 KOG0087|consensus 99.7 6.5E-18 1.4E-22 148.5 10.5 149 128-329 29-181 (222)
36 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.3E-17 5.1E-22 144.1 14.0 147 139-322 24-173 (175)
37 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 8E-18 1.7E-22 153.9 11.5 155 139-329 36-193 (232)
38 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.3E-17 2.8E-22 144.0 12.0 127 158-320 30-162 (164)
39 KOG0098|consensus 99.7 9.6E-18 2.1E-22 144.7 11.0 145 130-327 23-171 (216)
40 cd04175 Rap1 Rap1 subgroup. T 99.7 3.7E-17 8E-22 140.1 14.3 137 139-323 24-162 (164)
41 KOG0079|consensus 99.7 1.2E-17 2.6E-22 139.1 9.7 135 155-329 36-174 (198)
42 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.2E-17 4.7E-22 143.8 11.6 130 157-321 44-173 (174)
43 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4E-17 8.6E-22 143.4 13.2 133 158-325 33-171 (183)
44 cd04154 Arl2 Arl2 subfamily. 99.7 1.6E-17 3.4E-22 144.2 10.2 130 157-321 43-172 (173)
45 cd04136 Rap_like Rap-like subf 99.7 2.9E-17 6.2E-22 140.0 11.4 137 139-323 24-162 (163)
46 cd04151 Arl1 Arl1 subfamily. 99.7 2.1E-17 4.5E-22 141.0 10.1 129 158-321 29-157 (158)
47 cd01871 Rac1_like Rac1-like su 99.7 7.5E-17 1.6E-21 140.7 13.6 149 139-322 24-173 (174)
48 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.2E-16 2.5E-21 142.5 14.9 119 171-326 49-170 (201)
49 cd04131 Rnd Rnd subfamily. Th 99.7 9.1E-17 2E-21 141.0 13.9 150 139-324 24-176 (178)
50 cd04122 Rab14 Rab14 subfamily. 99.7 1.2E-16 2.6E-21 137.4 14.2 116 171-325 50-165 (166)
51 cd04126 Rab20 Rab20 subfamily. 99.7 1.9E-16 4.1E-21 143.8 16.1 158 158-328 30-194 (220)
52 cd04127 Rab27A Rab27a subfamil 99.7 1.2E-16 2.6E-21 139.0 14.1 117 172-326 63-179 (180)
53 PLN03071 GTP-binding nuclear p 99.7 4.4E-17 9.6E-22 147.6 11.5 115 170-326 60-174 (219)
54 cd04160 Arfrp1 Arfrp1 subfamil 99.7 6.3E-17 1.4E-21 138.7 11.9 133 156-321 34-166 (167)
55 cd04144 Ras2 Ras2 subfamily. 99.7 1.6E-16 3.5E-21 140.3 14.3 144 139-328 22-167 (190)
56 smart00178 SAR Sar1p-like memb 99.7 4.3E-17 9.4E-22 143.4 10.0 137 158-322 47-183 (184)
57 cd04176 Rap2 Rap2 subgroup. T 99.7 5.7E-17 1.2E-21 138.6 10.3 138 139-322 24-161 (163)
58 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.7E-16 3.7E-21 144.3 13.7 154 139-326 24-178 (222)
59 cd00879 Sar1 Sar1 subfamily. 99.7 1.2E-16 2.5E-21 140.5 11.8 141 158-322 49-189 (190)
60 cd04138 H_N_K_Ras_like H-Ras/N 99.7 9.9E-17 2.1E-21 136.0 10.5 136 139-323 24-161 (162)
61 KOG0080|consensus 99.7 1.5E-16 3.2E-21 134.3 11.2 146 129-326 27-176 (209)
62 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.7E-16 3.6E-21 139.7 11.9 142 139-326 23-168 (182)
63 cd04134 Rho3 Rho3 subfamily. 99.7 4.6E-16 1E-20 137.4 14.1 154 139-327 23-177 (189)
64 KOG0074|consensus 99.7 2.9E-17 6.2E-22 135.9 5.7 131 156-321 45-176 (185)
65 PTZ00369 Ras-like protein; Pro 99.7 5.7E-16 1.2E-20 136.7 14.4 142 139-326 28-169 (189)
66 KOG0095|consensus 99.7 8.3E-17 1.8E-21 134.3 8.4 131 157-326 37-171 (213)
67 cd00877 Ran Ran (Ras-related n 99.7 5.9E-16 1.3E-20 133.8 13.6 114 170-325 47-160 (166)
68 cd01865 Rab3 Rab3 subfamily. 99.7 8.5E-16 1.8E-20 132.1 13.7 116 171-325 49-164 (165)
69 cd04156 ARLTS1 ARLTS1 subfamil 99.7 4.4E-16 9.4E-21 132.6 11.5 130 157-321 28-159 (160)
70 KOG0086|consensus 99.7 1.1E-16 2.4E-21 134.0 7.3 131 157-326 39-173 (214)
71 KOG0091|consensus 99.7 1.7E-16 3.7E-21 134.3 8.1 133 157-327 38-176 (213)
72 cd04117 Rab15 Rab15 subfamily. 99.7 1.4E-15 3.1E-20 130.5 14.0 118 166-322 41-160 (161)
73 smart00173 RAS Ras subfamily o 99.7 1.6E-15 3.5E-20 129.5 14.3 140 139-324 23-162 (164)
74 KOG0081|consensus 99.7 3.3E-16 7.2E-21 131.9 9.6 132 157-326 39-183 (219)
75 cd04143 Rhes_like Rhes_like su 99.7 1E-15 2.2E-20 141.4 13.5 139 138-323 22-170 (247)
76 cd01867 Rab8_Rab10_Rab13_like 99.7 1.9E-15 4.1E-20 130.2 14.4 116 171-325 51-166 (167)
77 smart00174 RHO Rho (Ras homolo 99.7 1.6E-15 3.5E-20 131.0 13.7 152 139-325 21-173 (174)
78 cd01873 RhoBTB RhoBTB subfamil 99.7 5.2E-16 1.1E-20 138.3 10.7 127 170-322 64-194 (195)
79 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.4E-15 3E-20 129.6 12.9 139 139-323 25-163 (164)
80 cd04119 RJL RJL (RabJ-Like) su 99.7 7.3E-16 1.6E-20 131.4 11.2 117 170-324 47-167 (168)
81 cd04109 Rab28 Rab28 subfamily. 99.7 8.8E-16 1.9E-20 138.4 12.1 119 171-327 49-169 (215)
82 cd04103 Centaurin_gamma Centau 99.7 2E-15 4.3E-20 129.9 13.7 116 167-322 40-157 (158)
83 KOG0394|consensus 99.7 7.5E-16 1.6E-20 132.8 10.6 123 170-327 56-181 (210)
84 cd04110 Rab35 Rab35 subfamily. 99.6 2.7E-15 5.8E-20 133.6 14.4 116 172-327 55-170 (199)
85 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.6E-15 3.5E-20 131.8 11.6 141 139-324 23-165 (170)
86 cd04111 Rab39 Rab39 subfamily. 99.6 5.1E-15 1.1E-19 133.3 15.2 117 172-326 52-168 (211)
87 cd04177 RSR1 RSR1 subgroup. R 99.6 3.8E-15 8.3E-20 128.4 13.7 142 139-325 24-165 (168)
88 cd04140 ARHI_like ARHI subfami 99.6 1.3E-15 2.7E-20 131.1 10.5 137 139-321 24-162 (165)
89 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.8E-15 3.9E-20 128.7 11.2 131 156-321 27-157 (158)
90 cd04159 Arl10_like Arl10-like 99.6 2.4E-15 5.1E-20 126.3 11.6 129 158-321 30-158 (159)
91 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 4.6E-15 1E-19 127.3 13.6 116 171-325 50-165 (166)
92 KOG0083|consensus 99.6 3.4E-16 7.4E-21 128.4 6.1 135 156-329 27-165 (192)
93 cd04132 Rho4_like Rho4-like su 99.6 1.6E-15 3.5E-20 132.9 10.8 122 171-328 48-171 (187)
94 cd04135 Tc10 TC10 subfamily. 99.6 7.8E-15 1.7E-19 126.7 14.2 151 139-323 23-173 (174)
95 cd04130 Wrch_1 Wrch-1 subfamil 99.6 7.5E-15 1.6E-19 127.3 14.0 147 139-320 23-170 (173)
96 cd04116 Rab9 Rab9 subfamily. 99.6 5.5E-15 1.2E-19 127.3 12.9 115 170-322 52-169 (170)
97 cd04124 RabL2 RabL2 subfamily. 99.6 5.4E-15 1.2E-19 126.8 12.5 114 170-326 47-160 (161)
98 cd04125 RabA_like RabA-like su 99.6 1.3E-14 2.8E-19 127.6 14.4 117 171-326 48-164 (188)
99 PF00071 Ras: Ras family; Int 99.6 1.2E-14 2.6E-19 123.9 13.7 116 170-324 46-161 (162)
100 cd04115 Rab33B_Rab33A Rab33B/R 99.6 8.5E-15 1.8E-19 126.6 11.9 115 171-323 50-168 (170)
101 cd04112 Rab26 Rab26 subfamily. 99.6 2.4E-14 5.2E-19 126.5 14.7 119 171-328 49-167 (191)
102 cd04142 RRP22 RRP22 subfamily. 99.6 2.3E-14 5E-19 127.9 14.6 142 139-326 23-176 (198)
103 cd01866 Rab2 Rab2 subfamily. 99.6 9.2E-15 2E-19 126.2 11.3 116 171-325 52-167 (168)
104 cd01864 Rab19 Rab19 subfamily. 99.6 2E-14 4.3E-19 123.3 13.1 119 166-322 44-164 (165)
105 PLN03108 Rab family protein; P 99.6 3.5E-14 7.6E-19 127.7 15.0 117 171-326 54-170 (210)
106 KOG0395|consensus 99.6 1.8E-14 3.9E-19 128.5 12.7 143 137-325 24-166 (196)
107 cd04146 RERG_RasL11_like RERG/ 99.6 3E-14 6.4E-19 122.2 13.2 140 139-324 22-164 (165)
108 cd04155 Arl3 Arl3 subfamily. 99.6 1.1E-14 2.3E-19 125.7 10.4 130 157-321 43-172 (173)
109 cd01868 Rab11_like Rab11-like. 99.6 3.3E-14 7.2E-19 121.7 13.3 113 172-323 52-164 (165)
110 cd01863 Rab18 Rab18 subfamily. 99.6 1.7E-14 3.7E-19 122.9 11.1 113 171-322 48-160 (161)
111 cd01892 Miro2 Miro2 subfamily. 99.6 1.8E-14 3.8E-19 125.0 11.3 136 139-324 27-166 (169)
112 cd01860 Rab5_related Rab5-rela 99.6 4.7E-14 1E-18 120.2 13.5 115 170-323 48-162 (163)
113 cd04118 Rab24 Rab24 subfamily. 99.6 2.6E-14 5.6E-19 126.0 12.1 121 172-328 50-170 (193)
114 cd04113 Rab4 Rab4 subfamily. 99.6 3.3E-14 7.2E-19 121.2 12.3 114 171-323 48-161 (161)
115 PLN03110 Rab GTPase; Provision 99.6 2E-14 4.4E-19 129.8 11.5 117 171-326 60-176 (216)
116 cd04106 Rab23_lke Rab23-like s 99.6 4.4E-14 9.6E-19 120.2 12.8 111 171-321 50-160 (162)
117 KOG0088|consensus 99.6 9.3E-15 2E-19 123.2 8.2 119 170-327 60-178 (218)
118 cd01862 Rab7 Rab7 subfamily. 99.6 1E-13 2.2E-18 119.1 14.7 119 171-326 48-169 (172)
119 cd01870 RhoA_like RhoA-like su 99.6 8.2E-14 1.8E-18 120.4 14.1 150 139-322 24-173 (175)
120 cd04123 Rab21 Rab21 subfamily. 99.6 2.1E-14 4.6E-19 121.6 10.2 114 171-323 48-161 (162)
121 cd04101 RabL4 RabL4 (Rab-like4 99.5 3E-14 6.4E-19 121.7 10.3 113 171-323 51-163 (164)
122 cd04139 RalA_RalB RalA/RalB su 99.5 4.7E-14 1E-18 119.9 10.7 141 139-325 23-163 (164)
123 KOG0097|consensus 99.5 2.2E-14 4.9E-19 118.8 8.3 130 158-326 42-175 (215)
124 cd04147 Ras_dva Ras-dva subfam 99.5 1.1E-13 2.3E-18 123.1 13.4 140 139-324 22-163 (198)
125 smart00175 RAB Rab subfamily o 99.5 1.7E-13 3.8E-18 116.5 14.0 115 172-325 49-163 (164)
126 PLN03118 Rab family protein; P 99.5 1.6E-13 3.4E-18 123.2 14.4 118 171-326 61-179 (211)
127 cd01861 Rab6 Rab6 subfamily. 99.5 5.6E-14 1.2E-18 119.5 10.7 112 172-322 49-160 (161)
128 cd04137 RheB Rheb (Ras Homolog 99.5 2.1E-13 4.5E-18 118.6 11.5 120 171-328 48-167 (180)
129 KOG0393|consensus 99.5 3.4E-13 7.3E-18 119.2 12.1 154 138-325 26-180 (198)
130 cd00157 Rho Rho (Ras homology) 99.5 8.7E-13 1.9E-17 113.1 14.2 148 139-321 23-170 (171)
131 cd04148 RGK RGK subfamily. Th 99.5 2.7E-13 5.9E-18 123.0 11.3 116 170-325 48-164 (221)
132 cd04114 Rab30 Rab30 subfamily. 99.5 5.2E-13 1.1E-17 114.6 11.4 119 166-323 48-168 (169)
133 cd00876 Ras Ras family. The R 99.5 5.9E-13 1.3E-17 112.5 11.3 136 140-323 23-160 (160)
134 PTZ00132 GTP-binding nuclear p 99.4 7.9E-13 1.7E-17 119.0 12.1 115 170-326 56-170 (215)
135 cd01893 Miro1 Miro1 subfamily. 99.4 5.9E-13 1.3E-17 114.6 10.5 121 170-325 45-165 (166)
136 cd00154 Rab Rab family. Rab G 99.4 7.6E-13 1.6E-17 110.8 10.5 111 170-320 47-158 (159)
137 cd04129 Rho2 Rho2 subfamily. 99.4 2.9E-12 6.3E-17 112.8 13.7 130 171-329 48-178 (187)
138 cd04102 RabL3 RabL3 (Rab-like3 99.4 2.1E-12 4.5E-17 115.8 9.4 75 171-255 53-145 (202)
139 cd04171 SelB SelB subfamily. 99.4 5.4E-12 1.2E-16 107.1 11.4 126 159-321 37-163 (164)
140 cd01890 LepA LepA subfamily. 99.4 2.5E-12 5.4E-17 111.5 8.9 112 170-323 65-176 (179)
141 KOG0077|consensus 99.3 3.5E-13 7.6E-18 114.6 2.4 138 161-323 53-192 (193)
142 PLN00023 GTP-binding protein; 99.3 4E-12 8.6E-17 120.8 9.3 74 171-254 82-166 (334)
143 cd01897 NOG NOG1 is a nucleola 99.3 9.7E-12 2.1E-16 106.5 10.8 126 158-324 33-168 (168)
144 COG1100 GTPase SAR1 and relate 99.3 1.1E-11 2.4E-16 111.1 11.0 133 171-326 53-187 (219)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 5.5E-11 1.2E-15 101.6 13.2 115 171-322 49-164 (168)
146 KOG4252|consensus 99.3 2.5E-12 5.4E-17 110.7 4.7 144 129-326 36-183 (246)
147 KOG1673|consensus 99.2 4.4E-11 9.4E-16 100.8 9.8 136 155-325 48-187 (205)
148 cd01891 TypA_BipA TypA (tyrosi 99.2 5.8E-11 1.2E-15 105.1 11.2 125 164-324 57-188 (194)
149 cd00881 GTP_translation_factor 99.2 1.9E-10 4E-15 99.9 12.1 124 164-323 54-186 (189)
150 cd00882 Ras_like_GTPase Ras-li 99.2 1.6E-10 3.4E-15 94.7 8.9 113 171-320 44-156 (157)
151 cd01879 FeoB Ferrous iron tran 99.1 2.7E-10 5.8E-15 96.2 10.1 118 159-322 30-155 (158)
152 cd01898 Obg Obg subfamily. Th 99.1 1.7E-10 3.6E-15 98.9 8.8 119 167-322 42-169 (170)
153 PRK12299 obgE GTPase CgtA; Rev 99.1 2.6E-10 5.5E-15 109.8 10.7 129 156-326 193-330 (335)
154 TIGR00231 small_GTP small GTP- 99.1 6.5E-10 1.4E-14 92.3 11.2 118 164-320 40-160 (161)
155 KOG0096|consensus 99.1 1.7E-10 3.8E-15 100.2 7.9 133 139-324 33-169 (216)
156 cd04105 SR_beta Signal recogni 99.1 1.4E-09 3E-14 97.5 12.7 76 170-254 46-124 (203)
157 PRK04213 GTP-binding protein; 99.1 1.1E-09 2.4E-14 97.1 12.1 124 173-324 53-192 (201)
158 COG2229 Predicted GTPase [Gene 99.1 6.4E-10 1.4E-14 96.5 9.6 125 156-322 51-176 (187)
159 cd01889 SelB_euk SelB subfamil 99.1 1.5E-09 3.2E-14 95.9 12.0 117 171-324 67-186 (192)
160 cd01881 Obg_like The Obg-like 99.1 8.4E-10 1.8E-14 94.8 9.9 128 163-322 34-175 (176)
161 cd01878 HflX HflX subfamily. 99.1 1.1E-09 2.3E-14 97.5 10.6 119 159-322 75-203 (204)
162 PF00009 GTP_EFTU: Elongation 99.1 3.1E-09 6.7E-14 93.7 13.2 131 157-323 53-186 (188)
163 TIGR03594 GTPase_EngA ribosome 99.0 2.3E-09 5.1E-14 106.2 12.7 123 164-325 212-345 (429)
164 TIGR01393 lepA GTP-binding pro 99.0 2.2E-09 4.7E-14 110.8 11.7 111 172-324 70-180 (595)
165 TIGR02729 Obg_CgtA Obg family 99.0 1.6E-09 3.5E-14 104.1 10.0 128 156-323 192-328 (329)
166 cd01894 EngA1 EngA1 subfamily. 99.0 2.9E-09 6.3E-14 89.4 9.9 112 164-322 37-156 (157)
167 cd01888 eIF2_gamma eIF2-gamma 99.0 2.3E-09 5.1E-14 95.8 9.5 116 172-323 83-198 (203)
168 TIGR03156 GTP_HflX GTP-binding 99.0 2.4E-09 5.2E-14 103.8 9.8 118 159-322 223-350 (351)
169 TIGR00487 IF-2 translation ini 99.0 9.2E-09 2E-13 105.8 14.6 120 164-321 126-247 (587)
170 cd01883 EF1_alpha Eukaryotic e 99.0 1.7E-09 3.7E-14 97.9 7.8 135 155-313 60-194 (219)
171 PRK05306 infB translation init 98.9 4.3E-09 9.4E-14 111.0 11.4 121 164-321 329-449 (787)
172 PRK03003 GTP-binding protein D 98.9 9.5E-09 2.1E-13 103.5 13.4 123 164-326 251-384 (472)
173 TIGR02528 EutP ethanolamine ut 98.9 1.9E-09 4.1E-14 90.0 6.8 99 175-320 38-141 (142)
174 cd04168 TetM_like Tet(M)-like 98.9 1.4E-08 3E-13 93.3 13.1 154 154-322 46-233 (237)
175 KOG3883|consensus 98.9 5.8E-09 1.3E-13 88.0 9.0 137 143-325 38-176 (198)
176 TIGR01394 TypA_BipA GTP-bindin 98.9 6.5E-09 1.4E-13 107.1 11.2 134 154-323 46-190 (594)
177 PRK05433 GTP-binding protein L 98.9 4.7E-09 1E-13 108.4 9.8 112 171-324 73-184 (600)
178 PRK03003 GTP-binding protein D 98.9 5.3E-09 1.2E-13 105.3 9.9 115 164-325 78-200 (472)
179 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.9E-08 4.1E-13 92.0 12.5 148 143-325 21-177 (232)
180 PRK10218 GTP-binding protein; 98.9 1.4E-08 2.9E-13 104.8 12.7 130 158-323 54-194 (607)
181 PRK15494 era GTPase Era; Provi 98.9 1.5E-08 3.3E-13 97.8 12.2 121 159-323 87-215 (339)
182 cd01895 EngA2 EngA2 subfamily. 98.9 4.7E-08 1E-12 83.1 13.8 120 164-321 42-172 (174)
183 TIGR00475 selB selenocysteine- 98.9 1.7E-08 3.7E-13 104.0 12.8 129 159-324 37-166 (581)
184 CHL00189 infB translation init 98.9 8.4E-09 1.8E-13 108.1 10.6 115 171-322 294-408 (742)
185 TIGR00450 mnmE_trmE_thdF tRNA 98.9 1.7E-08 3.7E-13 100.7 12.3 114 162-326 241-362 (442)
186 PF08477 Miro: Miro-like prote 98.9 4E-09 8.6E-14 85.3 6.0 81 160-250 38-119 (119)
187 PRK05291 trmE tRNA modificatio 98.9 1.2E-08 2.6E-13 102.1 10.7 114 159-325 250-371 (449)
188 TIGR00437 feoB ferrous iron tr 98.8 1.2E-08 2.6E-13 105.3 10.2 118 160-323 29-154 (591)
189 PRK12296 obgE GTPase CgtA; Rev 98.8 1.2E-08 2.6E-13 102.6 9.5 135 159-325 193-341 (500)
190 cd04164 trmE TrmE (MnmE, ThdF, 98.8 3.5E-08 7.5E-13 82.7 10.9 107 165-323 42-156 (157)
191 PRK11058 GTPase HflX; Provisio 98.8 2.6E-08 5.7E-13 98.9 11.5 120 163-325 235-363 (426)
192 TIGR00491 aIF-2 translation in 98.8 3E-08 6.6E-13 102.0 11.3 132 173-322 70-214 (590)
193 TIGR00483 EF-1_alpha translati 98.8 1.8E-08 3.8E-13 100.2 9.1 131 156-316 69-199 (426)
194 PRK12297 obgE GTPase CgtA; Rev 98.8 4.4E-08 9.6E-13 97.0 11.8 121 166-325 199-328 (424)
195 cd00880 Era_like Era (E. coli 98.8 6.1E-08 1.3E-12 80.3 11.0 120 163-322 35-162 (163)
196 PRK15467 ethanolamine utilizat 98.8 3.3E-08 7E-13 85.0 8.9 105 176-326 41-149 (158)
197 PRK00093 GTP-binding protein D 98.7 1.7E-07 3.7E-12 93.2 13.9 121 165-325 214-345 (435)
198 PRK00093 GTP-binding protein D 98.7 6.1E-08 1.3E-12 96.4 10.5 109 164-321 41-159 (435)
199 PRK09518 bifunctional cytidyla 98.7 1E-07 2.3E-12 100.5 12.7 122 164-325 490-622 (712)
200 cd04166 CysN_ATPS CysN_ATPS su 98.7 5.9E-08 1.3E-12 87.1 9.3 84 156-253 61-144 (208)
201 PRK13351 elongation factor G; 98.7 7.5E-08 1.6E-12 101.3 11.4 93 143-254 48-140 (687)
202 TIGR00436 era GTP-binding prot 98.7 1E-07 2.2E-12 89.1 10.7 110 170-323 46-163 (270)
203 KOG4423|consensus 98.7 2.1E-08 4.5E-13 87.2 5.2 120 172-327 75-197 (229)
204 PRK12317 elongation factor 1-a 98.7 9.5E-08 2.1E-12 94.9 10.4 132 154-316 66-197 (425)
205 PRK00741 prfC peptide chain re 98.7 1.3E-07 2.8E-12 96.3 11.0 84 155-253 62-145 (526)
206 cd01886 EF-G Elongation factor 98.6 5.1E-07 1.1E-11 84.5 13.4 92 143-253 39-130 (270)
207 PRK09518 bifunctional cytidyla 98.6 1.3E-07 2.9E-12 99.7 10.3 111 168-325 319-437 (712)
208 KOG0090|consensus 98.6 2.6E-07 5.7E-12 82.2 10.4 144 160-322 70-237 (238)
209 TIGR03594 GTPase_EngA ribosome 98.6 1.5E-07 3.3E-12 93.3 10.1 114 164-324 39-160 (429)
210 PRK00454 engB GTP-binding prot 98.6 8.7E-07 1.9E-11 77.8 12.4 112 171-323 69-193 (196)
211 cd04170 EF-G_bact Elongation f 98.5 8.1E-07 1.8E-11 82.8 11.9 85 155-254 47-131 (268)
212 PRK12298 obgE GTPase CgtA; Rev 98.5 6.7E-07 1.4E-11 87.9 11.8 132 156-325 194-334 (390)
213 cd01885 EF2 EF2 (for archaea a 98.5 1E-06 2.2E-11 80.2 11.8 68 171-253 72-139 (222)
214 TIGR03680 eif2g_arch translati 98.5 2.5E-07 5.4E-12 91.5 8.4 117 171-323 79-195 (406)
215 cd01896 DRG The developmentall 98.5 7.8E-07 1.7E-11 81.5 10.7 50 160-209 35-91 (233)
216 cd01884 EF_Tu EF-Tu subfamily. 98.5 1.3E-06 2.9E-11 77.8 11.8 124 155-313 48-172 (195)
217 cd04163 Era Era subfamily. Er 98.5 1.1E-06 2.3E-11 73.8 10.5 113 168-322 47-167 (168)
218 cd04169 RF3 RF3 subfamily. Pe 98.5 2.7E-07 5.8E-12 86.3 7.2 85 154-253 53-137 (267)
219 PRK04004 translation initiatio 98.5 1.3E-06 2.7E-11 90.2 12.7 64 174-252 73-136 (586)
220 PRK10512 selenocysteinyl-tRNA- 98.5 1.2E-06 2.5E-11 90.9 12.5 128 157-323 35-165 (614)
221 PRK12740 elongation factor G; 98.5 9.1E-07 2E-11 92.9 11.5 86 154-254 42-127 (668)
222 cd04167 Snu114p Snu114p subfam 98.5 1.6E-06 3.5E-11 78.0 11.3 67 171-252 70-136 (213)
223 TIGR00503 prfC peptide chain r 98.5 1.8E-06 3.9E-11 88.0 12.6 83 156-253 64-146 (527)
224 PF02421 FeoB_N: Ferrous iron 98.4 3.5E-07 7.6E-12 78.7 6.1 115 159-319 34-156 (156)
225 TIGR00157 ribosome small subun 98.4 5.7E-07 1.2E-11 83.0 7.9 97 183-321 24-120 (245)
226 KOG0462|consensus 98.4 2.7E-06 5.8E-11 84.9 12.8 129 154-324 104-235 (650)
227 TIGR00484 EF-G translation elo 98.4 2.2E-06 4.8E-11 90.3 12.4 85 155-254 58-142 (689)
228 PRK04000 translation initiatio 98.4 1.3E-06 2.9E-11 86.5 8.8 116 172-323 85-200 (411)
229 PRK00089 era GTPase Era; Revie 98.4 5.1E-06 1.1E-10 78.3 12.3 113 170-324 51-171 (292)
230 cd04165 GTPBP1_like GTPBP1-lik 98.3 8.4E-06 1.8E-10 74.3 12.0 134 166-320 78-219 (224)
231 PRK14845 translation initiatio 98.3 8E-06 1.7E-10 88.7 13.6 126 174-321 528-670 (1049)
232 PRK12736 elongation factor Tu; 98.3 7E-06 1.5E-10 80.9 12.0 81 157-252 60-141 (394)
233 PF09439 SRPRB: Signal recogni 98.3 9.2E-07 2E-11 77.8 4.7 77 170-255 47-128 (181)
234 TIGR03598 GTPase_YsxC ribosome 98.2 1.5E-06 3.3E-11 75.7 5.6 102 173-313 65-179 (179)
235 PRK12739 elongation factor G; 98.2 7.9E-06 1.7E-10 86.1 11.8 93 143-254 48-140 (691)
236 PRK13768 GTPase; Provisional 98.2 4.3E-06 9.4E-11 77.5 8.4 132 173-323 98-246 (253)
237 PRK09554 feoB ferrous iron tra 98.2 5.3E-06 1.1E-10 88.1 10.1 114 163-322 41-166 (772)
238 cd01855 YqeH YqeH. YqeH is an 98.2 2.9E-06 6.4E-11 74.8 6.4 100 185-323 24-124 (190)
239 TIGR00485 EF-Tu translation el 98.2 1.8E-05 3.9E-10 78.0 11.6 83 156-253 59-142 (394)
240 cd01876 YihA_EngB The YihA (En 98.1 1.3E-05 2.7E-10 67.5 8.9 111 173-322 46-169 (170)
241 PLN00043 elongation factor 1-a 98.1 1.4E-05 3.1E-10 79.9 9.8 134 154-314 67-203 (447)
242 PRK12735 elongation factor Tu; 98.1 2.8E-05 6.1E-10 76.7 11.5 83 156-253 59-142 (396)
243 TIGR02034 CysN sulfate adenyly 98.1 1.1E-05 2.3E-10 79.9 8.1 124 155-314 63-187 (406)
244 COG1160 Predicted GTPases [Gen 98.0 0.00011 2.5E-09 72.3 14.3 124 164-325 218-352 (444)
245 PTZ00141 elongation factor 1- 98.0 2.7E-05 5.8E-10 78.0 9.8 133 155-314 68-203 (446)
246 PRK05124 cysN sulfate adenylyl 98.0 2.2E-05 4.8E-10 79.2 9.1 128 154-315 89-216 (474)
247 CHL00071 tufA elongation facto 98.0 5.9E-05 1.3E-09 74.8 11.7 83 156-253 59-142 (409)
248 COG0532 InfB Translation initi 98.0 5.2E-05 1.1E-09 75.8 11.0 122 164-323 44-169 (509)
249 KOG3886|consensus 97.9 6E-06 1.3E-10 74.5 3.1 100 139-254 22-131 (295)
250 cd01859 MJ1464 MJ1464. This f 97.9 1.7E-05 3.6E-10 67.6 5.8 94 186-324 3-96 (156)
251 COG0486 ThdF Predicted GTPase 97.9 6.8E-05 1.5E-09 74.1 10.6 120 158-326 251-378 (454)
252 PLN03126 Elongation factor Tu; 97.9 8.7E-05 1.9E-09 74.9 10.8 83 156-253 128-211 (478)
253 PRK00049 elongation factor Tu; 97.9 0.00015 3.2E-09 71.6 12.0 83 156-253 59-142 (396)
254 TIGR03597 GTPase_YqeH ribosome 97.9 5.4E-05 1.2E-09 73.8 8.7 102 182-322 50-151 (360)
255 COG1084 Predicted GTPase [Gene 97.8 0.00016 3.5E-09 68.5 11.1 84 158-252 201-293 (346)
256 PLN03127 Elongation factor Tu; 97.8 0.00021 4.6E-09 71.6 12.7 85 154-253 106-191 (447)
257 PRK09866 hypothetical protein; 97.8 0.00031 6.8E-09 72.3 13.6 116 172-321 230-350 (741)
258 PF06858 NOG1: Nucleolar GTP-b 97.8 7E-05 1.5E-09 53.2 6.2 45 196-250 14-58 (58)
259 PRK05506 bifunctional sulfate 97.8 5E-05 1.1E-09 79.3 8.0 84 156-253 88-171 (632)
260 COG0481 LepA Membrane GTPase L 97.8 0.00012 2.5E-09 72.4 9.1 129 154-324 53-186 (603)
261 PRK00007 elongation factor G; 97.8 0.00023 4.9E-09 75.2 11.8 84 156-254 59-142 (693)
262 KOG1144|consensus 97.7 0.00019 4.2E-09 74.0 10.4 129 174-325 542-688 (1064)
263 PTZ00327 eukaryotic translatio 97.7 0.00021 4.6E-09 71.7 10.3 116 172-323 117-232 (460)
264 PRK00098 GTPase RsgA; Reviewed 97.7 0.00011 2.5E-09 69.7 7.5 87 193-321 78-164 (298)
265 KOG1145|consensus 97.6 0.00022 4.7E-09 71.6 8.8 115 170-321 199-313 (683)
266 KOG1490|consensus 97.6 0.00015 3.2E-09 72.1 7.4 122 170-326 213-343 (620)
267 COG1159 Era GTPase [General fu 97.6 0.00057 1.2E-08 64.1 10.5 113 168-322 50-170 (298)
268 COG1217 TypA Predicted membran 97.6 0.00068 1.5E-08 67.0 11.0 136 151-322 47-193 (603)
269 COG1160 Predicted GTPases [Gen 97.5 0.00045 9.8E-09 68.2 9.6 112 165-323 44-164 (444)
270 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00037 8E-09 59.5 7.9 88 193-322 6-93 (157)
271 PRK12289 GTPase RsgA; Reviewed 97.5 0.00029 6.2E-09 68.5 7.7 88 191-321 85-172 (352)
272 COG5256 TEF1 Translation elong 97.5 0.00023 4.9E-09 69.4 6.8 135 154-314 67-201 (428)
273 TIGR00490 aEF-2 translation el 97.5 0.00014 3.1E-09 77.0 5.4 72 167-253 81-152 (720)
274 cd01899 Ygr210 Ygr210 subfamil 97.4 0.00074 1.6E-08 64.8 9.4 37 171-207 68-111 (318)
275 cd01850 CDC_Septin CDC/Septin. 97.4 0.00074 1.6E-08 63.4 8.8 81 157-253 44-157 (276)
276 cd04104 p47_IIGP_like p47 (47- 97.4 0.0024 5.1E-08 56.7 11.5 126 172-325 52-185 (197)
277 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00084 1.8E-08 63.4 7.7 88 191-321 74-161 (287)
278 KOG1489|consensus 97.2 0.0036 7.8E-08 59.3 11.2 125 156-321 231-364 (366)
279 PF03029 ATP_bind_1: Conserved 97.2 0.00032 6.9E-09 64.5 3.7 132 173-323 92-236 (238)
280 KOG1707|consensus 97.1 0.0011 2.4E-08 67.0 6.5 121 171-325 55-176 (625)
281 cd01852 AIG1 AIG1 (avrRpt2-ind 97.1 0.0045 9.8E-08 54.7 9.7 136 159-325 36-185 (196)
282 COG2262 HflX GTPases [General 97.1 0.0076 1.7E-07 58.9 11.9 122 160-325 227-357 (411)
283 COG0536 Obg Predicted GTPase [ 97.0 0.0093 2E-07 57.1 11.4 133 156-327 194-336 (369)
284 COG0370 FeoB Fe2+ transport sy 97.0 0.0043 9.4E-08 64.1 9.9 117 159-321 37-161 (653)
285 cd01849 YlqF_related_GTPase Yl 96.9 0.0034 7.4E-08 53.4 7.7 83 197-323 1-84 (155)
286 PTZ00416 elongation factor 2; 96.9 0.0012 2.6E-08 71.2 5.9 67 171-252 91-157 (836)
287 PRK12288 GTPase RsgA; Reviewed 96.9 0.0039 8.4E-08 60.6 8.5 87 194-321 119-205 (347)
288 PRK13796 GTPase YqeH; Provisio 96.8 0.0059 1.3E-07 59.7 8.7 87 197-322 71-157 (365)
289 PF10662 PduV-EutP: Ethanolami 96.8 0.005 1.1E-07 52.2 6.9 97 176-320 40-142 (143)
290 PLN00116 translation elongatio 96.7 0.002 4.3E-08 69.6 5.6 67 171-252 97-163 (843)
291 PF01926 MMR_HSR1: 50S ribosom 96.7 0.0078 1.7E-07 48.3 7.4 69 164-248 39-116 (116)
292 cd01857 HSR1_MMR1 HSR1/MMR1. 96.6 0.0033 7.3E-08 52.6 5.0 48 193-253 9-56 (141)
293 PRK07560 elongation factor EF- 96.6 0.0023 4.9E-08 68.1 4.8 70 170-254 85-154 (731)
294 cd01856 YlqF YlqF. Proteins o 96.6 0.0029 6.3E-08 54.8 4.4 86 191-323 15-100 (171)
295 TIGR00101 ureG urease accessor 96.5 0.0053 1.2E-07 54.8 6.1 26 298-323 170-195 (199)
296 KOG1191|consensus 96.3 0.024 5.2E-07 56.7 9.8 132 160-326 304-452 (531)
297 TIGR00073 hypB hydrogenase acc 96.3 0.022 4.8E-07 50.9 8.9 25 298-322 181-205 (207)
298 TIGR03596 GTPase_YlqF ribosome 96.3 0.012 2.6E-07 55.2 7.3 88 191-325 17-104 (276)
299 COG2895 CysN GTPases - Sulfate 96.3 0.026 5.6E-07 54.4 9.2 119 159-313 73-192 (431)
300 COG0480 FusA Translation elong 96.2 0.0093 2E-07 62.8 6.3 92 143-253 50-142 (697)
301 PRK09435 membrane ATPase/prote 96.0 0.066 1.4E-06 51.7 10.7 113 169-323 146-259 (332)
302 KOG1532|consensus 96.0 0.014 3E-07 54.5 5.6 137 172-325 116-265 (366)
303 COG4108 PrfC Peptide chain rel 95.9 0.016 3.5E-07 57.2 6.3 75 163-252 72-146 (528)
304 PRK09602 translation-associate 95.9 0.048 1E-06 54.0 9.8 36 172-207 72-114 (396)
305 KOG0458|consensus 95.7 0.03 6.6E-07 56.9 7.1 137 154-315 237-373 (603)
306 PRK01889 GTPase RsgA; Reviewed 95.6 0.069 1.5E-06 52.0 9.5 85 192-320 109-193 (356)
307 PRK09563 rbgA GTPase YlqF; Rev 95.6 0.034 7.5E-07 52.4 7.1 88 191-325 20-107 (287)
308 COG0218 Predicted GTPase [Gene 95.6 0.23 5.1E-06 44.3 11.7 127 158-323 55-196 (200)
309 KOG1423|consensus 95.6 0.077 1.7E-06 50.3 9.0 134 168-323 116-270 (379)
310 TIGR00750 lao LAO/AO transport 95.5 0.13 2.8E-06 48.8 10.7 112 170-323 125-237 (300)
311 KOG0705|consensus 95.4 0.037 8.1E-07 56.0 6.8 120 167-326 72-191 (749)
312 COG3276 SelB Selenocysteine-sp 95.2 0.1 2.2E-06 51.7 8.8 129 155-323 33-161 (447)
313 KOG3887|consensus 94.8 0.6 1.3E-05 43.1 12.1 124 172-325 75-203 (347)
314 cd01882 BMS1 Bms1. Bms1 is an 94.8 0.22 4.7E-06 45.2 9.4 66 170-253 81-147 (225)
315 COG1163 DRG Predicted GTPase [ 94.4 0.27 5.8E-06 47.1 9.1 48 162-209 100-154 (365)
316 KOG0468|consensus 94.1 0.093 2E-06 54.3 5.9 69 171-254 196-264 (971)
317 COG5257 GCD11 Translation init 94.1 0.15 3.2E-06 48.8 6.8 114 172-324 86-202 (415)
318 COG1162 Predicted GTPases [Gen 93.6 0.3 6.4E-06 46.4 7.9 87 194-321 78-164 (301)
319 KOG0464|consensus 93.6 0.019 4E-07 56.3 -0.3 85 154-253 84-168 (753)
320 PF04548 AIG1: AIG1 family; I 93.5 0.38 8.3E-06 43.1 8.2 84 159-253 36-130 (212)
321 TIGR00991 3a0901s02IAP34 GTP-b 92.4 0.71 1.5E-05 44.1 8.6 75 168-252 82-166 (313)
322 PF00350 Dynamin_N: Dynamin fa 92.2 0.28 6.2E-06 41.5 5.3 65 171-249 100-168 (168)
323 COG0050 TufB GTPases - transla 91.8 0.18 4E-06 47.6 3.8 85 154-253 57-142 (394)
324 smart00053 DYNc Dynamin, GTPas 91.3 0.81 1.8E-05 42.1 7.5 69 172-254 125-207 (240)
325 KOG0461|consensus 91.3 0.91 2E-05 44.0 7.8 122 172-326 70-195 (522)
326 COG3596 Predicted GTPase [Gene 90.9 1.1 2.3E-05 42.1 7.8 131 170-324 85-222 (296)
327 PRK10463 hydrogenase nickel in 89.9 0.35 7.7E-06 45.8 3.9 24 298-321 263-286 (290)
328 smart00010 small_GTPase Small 89.8 0.94 2E-05 35.8 5.9 53 188-253 39-91 (124)
329 KOG0467|consensus 89.5 0.51 1.1E-05 49.7 4.9 75 167-256 67-141 (887)
330 KOG0459|consensus 89.4 1 2.2E-05 44.5 6.5 138 154-316 139-278 (501)
331 COG0378 HypB Ni2+-binding GTPa 89.0 0.41 9E-06 42.6 3.4 25 298-322 175-199 (202)
332 cd01853 Toc34_like Toc34-like 88.7 1.6 3.4E-05 40.4 7.2 83 161-252 68-162 (249)
333 KOG0465|consensus 88.5 1 2.2E-05 46.6 6.1 83 156-253 88-170 (721)
334 COG5258 GTPBP1 GTPase [General 88.2 6.3 0.00014 38.9 11.0 67 172-253 201-269 (527)
335 cd04178 Nucleostemin_like Nucl 87.5 0.69 1.5E-05 40.3 3.8 44 197-253 1-44 (172)
336 COG4917 EutP Ethanolamine util 86.8 1.5 3.3E-05 36.5 5.1 98 176-321 41-143 (148)
337 KOG3905|consensus 86.3 2.2 4.7E-05 41.1 6.6 69 239-324 222-290 (473)
338 PF03308 ArgK: ArgK protein; 83.5 1.5 3.3E-05 40.8 4.2 103 171-321 121-227 (266)
339 KOG1424|consensus 81.0 1.6 3.4E-05 44.3 3.5 56 186-255 166-221 (562)
340 cd03110 Fer4_NifH_child This p 80.9 6 0.00013 33.9 6.9 66 170-252 91-156 (179)
341 KOG0460|consensus 79.5 4.6 9.9E-05 39.2 5.9 85 154-252 99-183 (449)
342 COG1703 ArgK Putative periplas 77.3 5.2 0.00011 38.1 5.5 27 297-323 227-253 (323)
343 KOG1143|consensus 75.4 21 0.00046 35.2 9.2 123 172-315 249-379 (591)
344 COG3640 CooC CO dehydrogenase 74.4 7.1 0.00015 36.0 5.4 64 172-252 134-198 (255)
345 cd02038 FleN-like FleN is a me 72.2 11 0.00024 31.1 5.9 65 172-251 45-109 (139)
346 KOG1707|consensus 72.2 26 0.00056 36.4 9.3 48 194-254 494-541 (625)
347 TIGR00993 3a0901s04IAP86 chlor 71.2 15 0.00033 38.9 7.6 83 159-253 153-250 (763)
348 PF05783 DLIC: Dynein light in 69.3 12 0.00026 38.0 6.4 70 240-326 197-266 (472)
349 TIGR03348 VI_IcmF type VI secr 68.4 4.6 0.0001 45.6 3.5 76 174-252 163-256 (1169)
350 COG1161 Predicted GTPases [Gen 67.2 14 0.00031 35.4 6.2 53 185-254 24-76 (322)
351 PF05049 IIGP: Interferon-indu 65.8 7.3 0.00016 38.3 3.9 62 172-251 86-153 (376)
352 PF14331 ImcF-related_N: ImcF- 65.2 7.8 0.00017 36.1 3.9 57 195-252 25-82 (266)
353 KOG2423|consensus 64.3 7.8 0.00017 38.4 3.7 59 180-253 197-258 (572)
354 cd01900 YchF YchF subfamily. 63.3 14 0.00031 34.6 5.2 36 173-208 63-105 (274)
355 KOG2484|consensus 58.3 14 0.00031 36.5 4.3 48 193-253 144-191 (435)
356 KOG0447|consensus 57.6 63 0.0014 33.6 8.8 118 159-290 396-545 (980)
357 PF04149 DUF397: Domain of unk 56.7 7.5 0.00016 27.4 1.6 14 2-15 9-22 (56)
358 PTZ00258 GTP-binding protein; 54.9 22 0.00049 35.1 5.2 37 172-208 85-128 (390)
359 cd03112 CobW_like The function 51.8 17 0.00037 30.8 3.4 41 195-251 118-158 (158)
360 KOG1954|consensus 51.4 19 0.00041 35.5 3.9 67 173-253 148-225 (532)
361 PRK09601 GTP-binding protein Y 47.8 39 0.00084 33.2 5.5 35 173-207 67-108 (364)
362 cd01452 VWA_26S_proteasome_sub 47.8 38 0.00083 29.9 5.1 50 197-248 4-57 (187)
363 KOG0466|consensus 47.0 23 0.0005 34.0 3.7 112 173-323 126-240 (466)
364 cd03111 CpaE_like This protein 44.6 63 0.0014 25.3 5.4 63 173-248 44-106 (106)
365 PHA02518 ParA-like protein; Pr 44.5 1.3E+02 0.0029 25.9 8.1 68 171-250 76-144 (211)
366 cd03115 SRP The signal recogni 44.5 48 0.001 28.1 5.1 66 171-253 82-153 (173)
367 cd02036 MinD Bacterial cell di 43.8 70 0.0015 26.8 6.1 64 173-252 64-127 (179)
368 KOG0448|consensus 41.5 90 0.0019 33.2 7.2 67 173-254 207-276 (749)
369 TIGR02836 spore_IV_A stage IV 41.1 93 0.002 31.5 7.0 13 238-250 179-191 (492)
370 COG4963 CpaE Flp pilus assembl 40.8 58 0.0013 31.9 5.5 66 172-252 218-284 (366)
371 TIGR01425 SRP54_euk signal rec 40.2 41 0.00089 33.7 4.5 65 171-252 182-252 (429)
372 cd01458 vWA_ku Ku70/Ku80 N-ter 37.4 66 0.0014 28.6 5.1 51 197-249 2-58 (218)
373 TIGR03371 cellulose_yhjQ cellu 34.7 1.6E+02 0.0035 26.2 7.2 66 173-252 116-181 (246)
374 KOG1534|consensus 34.2 1.3E+02 0.0029 27.6 6.2 182 93-324 49-251 (273)
375 COG3523 IcmF Type VI protein s 33.4 42 0.00091 38.0 3.6 75 174-253 176-270 (1188)
376 KOG0469|consensus 33.1 48 0.001 34.0 3.7 66 171-251 97-162 (842)
377 PF02492 cobW: CobW/HypB/UreG, 31.6 43 0.00094 28.8 2.8 44 195-254 113-156 (178)
378 KOG2485|consensus 29.8 93 0.002 30.0 4.8 16 239-254 73-88 (335)
379 COG0523 Putative GTPases (G3E 28.6 79 0.0017 30.5 4.2 44 195-253 116-159 (323)
380 KOG0463|consensus 27.6 2.9E+02 0.0062 27.6 7.7 16 11-26 10-25 (641)
381 TIGR00064 ftsY signal recognit 27.4 95 0.0021 29.0 4.5 66 170-252 153-230 (272)
382 cd02117 NifH_like This family 27.2 2.6E+02 0.0056 24.5 7.1 71 170-251 115-187 (212)
383 PF03731 Ku_N: Ku70/Ku80 N-ter 26.5 86 0.0019 27.8 3.9 51 198-249 1-55 (224)
384 cd03114 ArgK-like The function 25.9 1.2E+02 0.0025 25.4 4.4 34 171-207 91-124 (148)
385 PRK13849 putative crown gall t 25.5 1.6E+02 0.0035 26.7 5.5 67 171-250 83-151 (231)
386 TIGR01007 eps_fam capsular exo 23.8 3.2E+02 0.007 23.6 7.1 68 171-253 127-194 (204)
387 TIGR01969 minD_arch cell divis 23.5 2.3E+02 0.005 25.1 6.2 65 171-252 108-173 (251)
388 PF01656 CbiA: CobQ/CobB/MinD/ 23.1 1.2E+02 0.0027 25.6 4.2 67 172-252 95-161 (195)
389 cd02042 ParA ParA and ParB of 22.3 2E+02 0.0043 21.8 4.8 34 172-207 40-73 (104)
390 cd02032 Bchl_like This family 21.6 3.6E+02 0.0078 24.5 7.2 69 171-251 115-184 (267)
391 TIGR00578 ku70 ATP-dependent D 20.6 1.8E+02 0.004 30.3 5.4 55 193-249 7-68 (584)
392 PHA03260 Capsid triplex subuni 20.4 1.1E+02 0.0023 29.0 3.2 39 89-135 255-293 (339)
393 TIGR01968 minD_bact septum sit 20.3 2.3E+02 0.0049 25.3 5.5 65 171-251 111-175 (261)
394 cd02037 MRP-like MRP (Multiple 20.0 3.7E+02 0.008 22.4 6.5 66 171-252 67-134 (169)
No 1
>KOG0082|consensus
Probab=100.00 E-value=4.1e-82 Score=598.44 Aligned_cols=304 Identities=38% Similarity=0.651 Sum_probs=291.8
Q ss_pred eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651 13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS 92 (334)
Q Consensus 13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 92 (334)
-||.|||.+||+++|+..+|+ +||.|++++|.+|++||..+ ++++.+|..+..+..++.........+++++
T Consensus 51 KQmkilh~~gfs~ee~~~~r~--~I~~N~~~~~~~ll~a~~~~------~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 122 (354)
T KOG0082|consen 51 KQMKILHGDGFSEEELLEYRP--VIYSNIIQSLKALLRAMETL------GINLDDPERENDAQKLTLLADAAEELGVFSP 122 (354)
T ss_pred HHHHHHhcCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh------cCCCCChhhhhHHHHHHHhhhcccccccCCH
Confidence 489999999999999999999 99999999999999999999 9999999999888888754443312368999
Q ss_pred HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651 93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI 172 (334)
Q Consensus 93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~ 172 (334)
|++++|+.||+||+||+||.|+++|+|+|++.|||++++||.+ |+|+||++|||++|+||+||.+..|.+++.
T Consensus 123 e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~-------~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~ 195 (354)
T KOG0082|consen 123 ELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISS-------PDYVPTEQDILRSRVPTTGIVEVEFTIKGL 195 (354)
T ss_pred HHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcC-------CCCCCCHHHHHhhccCcCCeeEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
+++++||||||++|+||+|||++|++||||+++|+|||++.||..+|||.||+++|++|||++||.+++||||+||.|||
T Consensus 196 ~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 196 KFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred ceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM 332 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~ 332 (334)
+||+ ...+++.|||||.|. +++++|.+||+.+|.++++...+++|+|+|||+|++||+.||++|.++|+++||+.+|
T Consensus 276 eEKi--~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~g 352 (354)
T KOG0082|consen 276 EEKI--KKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAG 352 (354)
T ss_pred HHHh--ccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 999999999999999 8888999999999999998877899999999999999999999999999999999999
Q ss_pred CC
Q psy3651 333 LQ 334 (334)
Q Consensus 333 l~ 334 (334)
|+
T Consensus 353 l~ 354 (354)
T KOG0082|consen 353 LI 354 (354)
T ss_pred CC
Confidence 84
No 2
>KOG0085|consensus
Probab=100.00 E-value=4.6e-79 Score=539.32 Aligned_cols=302 Identities=42% Similarity=0.703 Sum_probs=292.7
Q ss_pred eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651 13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS 92 (334)
Q Consensus 13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 92 (334)
-+|-|||+.||++++++.++. .+|.||+.+|+++|+||+.| .|++..++|.++|..+++.+... -+.|..
T Consensus 57 kqmriihg~gyseedrkgf~~--lvyqnif~amqaMIrAMetL------~I~y~~e~nk~~A~~vrevd~ek--Vttfe~ 126 (359)
T KOG0085|consen 57 KQMRIIHGAGYSEEDRKGFTK--LVYQNIFTAMQAMIRAMETL------KIPYKREENKAHASLVREVDVEK--VTTFEK 126 (359)
T ss_pred HHHHhhhcCCCChhhhccchH--HHHHHHHHHHHHHHHHHHHh------ccccccccchhhhhHhhhcchHH--hhhhhH
Confidence 368899999999999999999 99999999999999999999 99999999999999998865543 468999
Q ss_pred HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651 93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI 172 (334)
Q Consensus 93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~ 172 (334)
.++.+|+.||.|||||+||+||+||||.||++|++.+++||+. |+|.||.+|+|+.|+||+||.++.|+..++
T Consensus 127 ~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~-------~~ylPTqQDvLRvRvPTTGi~eypfdl~~i 199 (359)
T KOG0085|consen 127 RYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIAT-------PGYLPTQQDVLRVRVPTTGIIEYPFDLQKI 199 (359)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcC-------cccCcchhhhheeecCcccceecCcchhhh
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
.|++.|||||+++|+||+|||+++++|+|++++|+|||+|.|.++.|||+||+.+|..|+..|||.++++|||+||.||+
T Consensus 200 ifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlL 279 (359)
T KOG0085|consen 200 IFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 279 (359)
T ss_pred eeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM 332 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~ 332 (334)
++|| ..+.+.+|||+|.|++.+.++|.+||.++|..+++..++.++.|+|||+|++||+.||.+|+++|++.+|++.+
T Consensus 280 EekI--~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~N 357 (359)
T KOG0085|consen 280 EEKI--LYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYN 357 (359)
T ss_pred hhhh--hHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhc
Confidence 9999 99999999999999999999999999999999988877899999999999999999999999999999999987
Q ss_pred C
Q psy3651 333 L 333 (334)
Q Consensus 333 l 333 (334)
|
T Consensus 358 L 358 (359)
T KOG0085|consen 358 L 358 (359)
T ss_pred c
Confidence 6
No 3
>KOG0099|consensus
Probab=100.00 E-value=2.4e-71 Score=497.21 Aligned_cols=307 Identities=37% Similarity=0.596 Sum_probs=287.4
Q ss_pred eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651 13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS 92 (334)
Q Consensus 13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 92 (334)
-||-|+|.+||+++|++...+ .|+.||-++|.+|+.||+.+ .|.+++.+|+|+..++.|+...+.. +..+|+
T Consensus 58 KQMRILHvnGF~~~EkreKI~--dI~~Ni~eai~~iv~aM~~l----~p~v~l~~~~~~~~~dYIls~~~~~--~~~~~~ 129 (379)
T KOG0099|consen 58 KQMRILHVNGFNDEEKREKIQ--DIKNNIKEAILTIVGAMSNL----VPPVELANPENQFRVDYILSVMNSP--DFDYPP 129 (379)
T ss_pred hhhheeeecCCChHHHHHhhH--HHHHHHHHHHHHHHHHHhcc----CCCcccCCcccchhHHHHHhcCCCC--cccCCH
Confidence 478899999999999999999 99999999999999999999 6779999999999999999987764 678999
Q ss_pred HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651 93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI 172 (334)
Q Consensus 93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~ 172 (334)
|+.+.++.||+|.||++||+|++||||.|+|+|||+++++|.+ ++|+|+.+|+||||+-|+||.++.|.+..+
T Consensus 130 Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~-------~~Y~Ps~qDiLrcRvlTsGIfet~FqVdkv 202 (379)
T KOG0099|consen 130 EFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------ADYVPSDQDILRCRVLTSGIFETKFQVDKV 202 (379)
T ss_pred HHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecc-------cCCCCcHHHHHHhhhhccceeeEEEecccc
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
+|+++||||||.+|+||+.||.+++|||||++.|+|++++.||+++||+.||+.+|++|+|++|++.+++|||+||+|+.
T Consensus 203 ~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 203 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred ceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhCCCCCCCCc------------cHHHHHHHHHHHHHhhccCCC---CCeEEEEEeeecCchHHHHHH
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQ------------DMQAVQTFLLNYFKAVKRDEK---KPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~------------~~~~~~~fi~~~F~~l~~~~~---~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+|+....+.+.+|||+|.+... ..-.|+-||+..|+++..+.. +.+|+|+|||+|++||+.||.
T Consensus 283 aeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFn 362 (379)
T KOG0099|consen 283 AEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFN 362 (379)
T ss_pred HHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHH
Confidence 99996556679999999976411 122456689999999877643 668999999999999999999
Q ss_pred HHHHHHHHHhhhhccCC
Q psy3651 318 AVKNTILHRNLRDLMLQ 334 (334)
Q Consensus 318 ~v~~~I~~~~l~~~~l~ 334 (334)
.+.++|.+.+|++.+|+
T Consensus 363 DcrdiIqr~hlrqyeLl 379 (379)
T KOG0099|consen 363 DCRDIIQRMHLRQYELL 379 (379)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999874
No 4
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=3e-70 Score=521.16 Aligned_cols=299 Identities=43% Similarity=0.735 Sum_probs=285.8
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHH
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFST 93 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 93 (334)
||.++|..||+++|+..+|. +|+.|++++|+.|++||+.+ ++++.+|++...+..++...... ....++++
T Consensus 19 Qmril~~~gfs~~Er~~~~~--~I~~Ni~~~~~~ll~a~~~~------~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 89 (317)
T cd00066 19 QMKILHGDGFSEEELREYRP--VIYSNILQSMKALLEAMERL------NIPFGDPENEKDAKKILSFAPEL-EEGELPPE 89 (317)
T ss_pred HHHHhcCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc------CCCCCChhhHHHHHHHHhccccc-cccCCCHH
Confidence 78899999999999999999 99999999999999999999 99999999998888888765432 24579999
Q ss_pred HHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcc
Q psy3651 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIP 173 (334)
Q Consensus 94 ~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~ 173 (334)
+++.|..||+||+||+||.++++++|+|++.|||++++||++ ++|.||.+|++++|.||+|+.+..|.+++..
T Consensus 90 ~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~-------~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~ 162 (317)
T cd00066 90 LAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISD-------PDYIPTEQDILRARVKTTGIVETKFTIKNLK 162 (317)
T ss_pred HHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhC-------CCCCCChhHheeeecccCCeeEEEEEecceE
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+++||+|||+++|++|.+||+++++||||+|+|+||+.+.||+..|||.+|+.+|+++++++++.++|++||+||+|+++
T Consensus 163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhh
Q psy3651 254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 330 (334)
Q Consensus 254 eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~ 330 (334)
+|+ +..|+++|||+|.|.++++++|.+||+++|.++.+..++.+|+|+|||+|+++|+.+|+.|.++|++++++.
T Consensus 243 ~ki--~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~~ 317 (317)
T cd00066 243 EKI--KKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLKD 317 (317)
T ss_pred Hhh--cCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 999 888999999999998889999999999999999876568999999999999999999999999999998863
No 5
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=1.4e-69 Score=520.67 Aligned_cols=301 Identities=41% Similarity=0.696 Sum_probs=283.5
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCC-cCCCcCcH
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT-CIDSRLFS 92 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 92 (334)
||.++|..||+++|+..+|. +||.|++++|+.|++||+.+ +|+++++++...+..++...... ..+..+++
T Consensus 40 Qmril~~~gfs~~E~~~~~~--~I~~Nii~~~~~ll~a~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (342)
T smart00275 40 QMRILHGDGFSQEERREYRP--LIYSNILESMKALVDAMEEL------NIPFEDPESILDIRIITEQFNKTDETENVLPK 111 (342)
T ss_pred HHHHhhcCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc------CCCCCChhhHHHHHHHhccccccccccccCCH
Confidence 68899999999999999999 99999999999999999999 99999988877777777653111 12346899
Q ss_pred HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651 93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI 172 (334)
Q Consensus 93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~ 172 (334)
++++.|..||+||+||+||.++++|+|+|++.||+++++||++ |+|+||.+|++++|.||+|+.+..|.+++.
T Consensus 112 e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~-------~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~ 184 (342)
T smart00275 112 EIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD-------PDYVPTEQDILRSRVPTTGIQETAFIVKKL 184 (342)
T ss_pred HHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC-------CCCCCCHHHhhheeCCccceEEEEEEECCe
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
++++||+|||+++|++|.+||+++++||||+|+|+|||.++||+..||+.+|+.+|+++++++++.++|++||+||.|+|
T Consensus 185 ~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 185 FFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred EEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhc
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDL 331 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~ 331 (334)
.+|+ +..++++|||+|+|+ +++++|.+||+++|.++.+. .++.+|+|+|||+|+.+++.+|+.+.++|++++++..
T Consensus 265 ~~Kl--~~~~l~~~fp~y~g~-~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l~~~ 341 (342)
T smart00275 265 EEKI--KKVPLVDYFPDYKGP-NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDA 341 (342)
T ss_pred HHHh--CCCchhccCCCCCCC-CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 888999999999997 68999999999999999875 4588999999999999999999999999999999876
Q ss_pred c
Q psy3651 332 M 332 (334)
Q Consensus 332 ~ 332 (334)
|
T Consensus 342 ~ 342 (342)
T smart00275 342 G 342 (342)
T ss_pred C
Confidence 5
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=4.6e-66 Score=505.54 Aligned_cols=293 Identities=42% Similarity=0.718 Sum_probs=261.0
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcC-------CCcchHHHHHHhcccCCCcC
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQ-------NDMNAIHAEKIFQFDNNTCI 86 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~-------~~~~~~~~~~i~~~~~~~~~ 86 (334)
++.++|..||+++|+..+|+ +|+.|++++|+.|+++|..+ ++++. ++.+...+..+.........
T Consensus 77 Q~ril~~~~~~~~E~~~~~~--~I~~Nii~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (389)
T PF00503_consen 77 QMRILYGPGFSEEERESYRP--IIYSNIIQSMKQILEALEEL------GIPFSFSESSQLNEENQEIAEKLKEILDPLDS 148 (389)
T ss_dssp HHHHHHST---HHHHHHTHH--HHHHHHHHHHHHHHHHHHHT------TCH-SSS-TT--STTHHHHHHHHHHHHCTTST
T ss_pred HHHHHhCCCCchhhhhccee--eEecCchhhHHHHHHHHHHc------CCCccccccccCCHHHHHHHHHHHhhhccccc
Confidence 57789999999999999999 99999999999999999999 88888 67888888888775444321
Q ss_pred C--------CcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeee
Q psy3651 87 D--------SRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKA 158 (334)
Q Consensus 87 ~--------~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~ 158 (334)
. ..+++++++.|..||+||+||++|.++++++|+|+++|||++++||++ ++|+||++|++++|.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~-------~~Y~PT~~DIl~~r~~ 221 (389)
T PF00503_consen 149 SEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQ-------PDYIPTDEDILRCRVK 221 (389)
T ss_dssp TCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHS-------TTB---HHHHHHS---
T ss_pred cccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcC-------CCccCCCCCeeeecCC
Confidence 1 148999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecceeEEEEEe-eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 159 TKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 159 T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
|+||.+..|.+ ++..++++|||||+++|+||.|||+++++||||+|+|+|||+++||+++|||.||+.+|+++++++|+
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcchhhhccccch-hhhhCCCCCCC-CccHHHHHHHHHHHHHhhccCCC--CCeEEEEEeeecCchHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTS-IAEHFPEFEGD-PQDMQAVQTFLLNYFKAVKRDEK--KPLFHHFTTAVDTENIK 313 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~-l~~~Fp~y~g~-~~~~~~~~~fi~~~F~~l~~~~~--~~i~~~~tsA~d~~nI~ 313 (334)
.++|+||||||.|+|++|+ ...+ +++|||+|.|+ +++++.|.+||+++|.++..... +.+|+|+|||+|+++|+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl--~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKL--KKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHT--TTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccCceEEeeecHHHHHHHc--cCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 9999999999999999999 7777 99999999998 68999999999999999987655 88999999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 314 IVFNAVKNTI 323 (334)
Q Consensus 314 ~vf~~v~~~I 323 (334)
.+|+.|.++|
T Consensus 380 ~v~~~v~~~i 389 (389)
T PF00503_consen 380 KVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcC
Confidence 9999999986
No 7
>KOG0071|consensus
Probab=99.91 E-value=4.5e-24 Score=175.81 Aligned_cols=133 Identities=24% Similarity=0.403 Sum_probs=121.2
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
..+||+|++...+++++++|.+||+|||.+.|+.|.|||.+..++|||+|.++. +|++|+.+.+.+++++
T Consensus 44 ~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~----------dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 44 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR----------DRIEEARNELHRIIND 113 (180)
T ss_pred ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccch----------hhHHHHHHHHHHHhCC
Confidence 457999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
+.+.++|+++++||+|+..+. +..+++++ .++.+.++++++...+||.++.+..+
T Consensus 114 ~em~~~~~LvlANkQDlp~A~---~pqei~d~----------------------leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 114 REMRDAIILILANKQDLPDAM---KPQEIQDK----------------------LELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred HhhhcceEEEEecCccccccc---CHHHHHHH----------------------hccccccCCccEeeccccccchhHHH
Confidence 999999999999999998873 55556654 55666667899999999999999999
Q ss_pred HHHHHHHH
Q psy3651 315 VFNAVKNT 322 (334)
Q Consensus 315 vf~~v~~~ 322 (334)
-|.|+...
T Consensus 169 glswlsnn 176 (180)
T KOG0071|consen 169 GLSWLSNN 176 (180)
T ss_pred HHHHHHhh
Confidence 99998763
No 8
>KOG0070|consensus
Probab=99.90 E-value=8.7e-24 Score=182.28 Aligned_cols=134 Identities=25% Similarity=0.401 Sum_probs=121.3
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
+||+|.+.+.+++++++|++||+|||.+.|+.|.+||.+.+++|||+|.+|. .|+.|+.+.+..+++.+.
T Consensus 46 vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr----------~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 46 VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDR----------ERIEEAKEELHRMLAEPE 115 (181)
T ss_pred CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcH----------HHHHHHHHHHHHHHcCcc
Confidence 8999999999999999999999999999999999999999999999999998 999999999999999998
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|+++++||+|+..+ + ....+++. +++.....+.++++.|||.+|+++.+.+
T Consensus 116 l~~~~llv~aNKqD~~~a-l--s~~ei~~~----------------------L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGA-L--SAAEITNK----------------------LGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred cCCceEEEEechhhcccc-C--CHHHHHhH----------------------hhhhccCCCCcEEeeccccccccHHHHH
Confidence 999999999999999876 3 44445443 4555555688999999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
+|+.+.+..
T Consensus 171 ~wl~~~~~~ 179 (181)
T KOG0070|consen 171 DWLSNNLKK 179 (181)
T ss_pred HHHHHHHhc
Confidence 999998764
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=2.1e-21 Score=169.95 Aligned_cols=133 Identities=24% Similarity=0.373 Sum_probs=115.5
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..||+|++...+.+++..+.+||+|||.+.|+.|.+||.++++||||+|.++. +++.++...+.++++++
T Consensus 42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~----------~~l~e~~~~L~~ll~~~ 111 (175)
T PF00025_consen 42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDP----------ERLQEAKEELKELLNDP 111 (175)
T ss_dssp EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGG----------GGHHHHHHHHHHHHTSG
T ss_pred cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccc----------eeecccccchhhhcchh
Confidence 68999999999999999999999999999999999999999999999999997 89999999999999998
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~ 314 (334)
...++|++|++||+|+... + ....+.+. ..+..- ..+++.++.|||.+|+|+.+
T Consensus 112 ~~~~~piLIl~NK~D~~~~-~--~~~~i~~~----------------------l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 112 ELKDIPILILANKQDLPDA-M--SEEEIKEY----------------------LGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp GGTTSEEEEEEESTTSTTS-S--THHHHHHH----------------------TTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred hcccceEEEEeccccccCc-c--hhhHHHhh----------------------hhhhhcccCCceEEEeeeccCCcCHHH
Confidence 8899999999999998654 2 33334433 222222 24789999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 315 VFNAVKNTI 323 (334)
Q Consensus 315 vf~~v~~~I 323 (334)
.|+|+.+.|
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999876
No 10
>KOG0084|consensus
Probab=99.86 E-value=3.4e-21 Score=167.55 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=105.0
Q ss_pred eeeecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 156 RKATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 156 ~~~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
+..|+|++.. .+++. .++++||||+||+++|....+||++|+|||||+|+++. .+|.....|++++
T Consensus 38 ~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~----------~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 38 YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ----------ESFNNVKRWIQEI 107 (205)
T ss_pred hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH----------HHhhhHHHHHHHh
Confidence 4678898844 44443 48999999999999999999999999999999999997 6677767777776
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeE-EEEEeeecCc
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLF-HHFTTAVDTE 310 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~-~~~tsA~d~~ 310 (334)
-.+ ...+.|.+||+||+|+.+.+. - +.+.|..|..+ .++. +.+|||++..
T Consensus 108 ~~~-~~~~v~~lLVGNK~Dl~~~~~--v----------------~~~~a~~fa~~----------~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 108 DRY-ASENVPKLLVGNKCDLTEKRV--V----------------STEEAQEFADE----------LGIPIFLETSAKDST 158 (205)
T ss_pred hhh-ccCCCCeEEEeeccccHhhee--c----------------CHHHHHHHHHh----------cCCcceeecccCCcc
Confidence 554 457789999999999988765 1 23344333322 2344 8999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy3651 311 NIKIVFNAVKNTILHRN 327 (334)
Q Consensus 311 nI~~vf~~v~~~I~~~~ 327 (334)
||+++|..+...|.++.
T Consensus 159 NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQRK 175 (205)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999888764
No 11
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=3.3e-21 Score=169.49 Aligned_cols=135 Identities=24% Similarity=0.412 Sum_probs=109.8
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|++...+..+++.+++||++||+.++..|.+||++++++|||+|+++. .++.++..++..+++.+.
T Consensus 46 ~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~----------~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDE 115 (181)
T ss_pred cCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHHhcCHh
Confidence 4677887777788889999999999999999999999999999999999998 788899999999888777
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|++|++||+|+..+ . ....+.+. .++.....+.++++.|||++|+||.++|
T Consensus 116 ~~~~piilv~NK~Dl~~~-~--~~~~~~~~----------------------l~l~~~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNA-M--NAAEITDK----------------------LGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred hCCCCEEEEEECCCCCCC-C--CHHHHHHH----------------------hCccccCCCceEEEeccCCCCCCHHHHH
Confidence 788999999999998653 2 22222221 2332222356777889999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 317 NAVKNTILHR 326 (334)
Q Consensus 317 ~~v~~~I~~~ 326 (334)
+|+.+.+.++
T Consensus 171 ~~l~~~~~~~ 180 (181)
T PLN00223 171 DWLSNNIANK 180 (181)
T ss_pred HHHHHHHhhc
Confidence 9999888764
No 12
>KOG0073|consensus
Probab=99.85 E-value=6.7e-21 Score=160.92 Aligned_cols=137 Identities=20% Similarity=0.320 Sum_probs=118.1
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
...||.|+..++..++++.+++||+|||...|+.|.+||+.++|+|||+|+||. -||++....+.+++..
T Consensus 43 ~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~----------~r~~e~~~~L~~lL~e 112 (185)
T KOG0073|consen 43 TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDR----------MRMQECKQELTELLVE 112 (185)
T ss_pred ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchH----------HHHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999999999999999999999999998 8999999999999998
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~ 313 (334)
.....+|++|++||+|+..+ + ....+...+ ++.. .+...+....|||.+|+++.
T Consensus 113 erlaG~~~Lvlank~dl~~~-l--~~~~i~~~~----------------------~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 113 ERLAGAPLLVLANKQDLPGA-L--SLEEISKAL----------------------DLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred hhhcCCceEEEEecCcCccc-c--CHHHHHHhh----------------------CHHHhccccCceEEEEeccccccHH
Confidence 88899999999999999754 3 333333221 1111 13467889999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILHR 326 (334)
Q Consensus 314 ~vf~~v~~~I~~~ 326 (334)
+.|+|+.+.+..+
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 13
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=4.4e-20 Score=161.13 Aligned_cols=131 Identities=24% Similarity=0.411 Sum_probs=105.3
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|++...+..+++.+.+||++||..++..|.+||++++++|||+|+++. .++.++.+++..+++....
T Consensus 43 ~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~----------~s~~~~~~~l~~~~~~~~~ 112 (175)
T smart00177 43 PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDR----------DRIDEAREELHRMLNEDEL 112 (175)
T ss_pred CccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHhhCHhh
Confidence 567777666677789999999999999999999999999999999999997 7889999999999876656
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.++|++|++||+|+... . ....+.+. .++.....+.++++.|||++|.||.++|+
T Consensus 113 ~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 113 RDAVILVFANKQDLPDA-M--KAAEITEK----------------------LGLHSIRDRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred cCCcEEEEEeCcCcccC-C--CHHHHHHH----------------------hCccccCCCcEEEEEeeCCCCCCHHHHHH
Confidence 78999999999998643 2 22222221 22222334667888899999999999999
Q ss_pred HHHHHH
Q psy3651 318 AVKNTI 323 (334)
Q Consensus 318 ~v~~~I 323 (334)
|+.+.+
T Consensus 168 ~l~~~~ 173 (175)
T smart00177 168 WLSNNL 173 (175)
T ss_pred HHHHHh
Confidence 998764
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.82 E-value=2.9e-19 Score=160.11 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=101.8
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.++|.||.. .++....+.+++ +++++||++||+.++.+|..||++++++|+|+|+++.
T Consensus 23 ~~f~~~~~~Ti~---------~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~-------- 85 (202)
T cd04120 23 DTFCEACKSGVG---------VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK-------- 85 (202)
T ss_pred CCCCCcCCCcce---------eEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH--------
Confidence 556667777642 122233445544 8889999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.+++++..|++.+ +.....+.|++|++||+||..++- +. .+.+.++..+ .
T Consensus 86 --~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~------v~------------~~~~~~~a~~---------~ 135 (202)
T cd04120 86 --ETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDRE------IS------------RQQGEKFAQQ---------I 135 (202)
T ss_pred --HHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccc------cC------------HHHHHHHHHh---------c
Confidence 6777777666644 433446799999999999864321 11 1111111110 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+++.+++|||++|.||.++|.++.+.+.+.
T Consensus 136 ~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 136 TGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 246788999999999999999999988764
No 15
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=5.9e-20 Score=159.36 Aligned_cols=130 Identities=24% Similarity=0.399 Sum_probs=103.2
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|++...+...++++++||++|+++++..|..||++++++|||+|+++. .++.++..++.++++.+.
T Consensus 38 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~----------~s~~~~~~~~~~~~~~~~ 107 (168)
T cd04149 38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR----------DRIDEARQELHRIINDRE 107 (168)
T ss_pred cCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCch----------hhHHHHHHHHHHHhcCHh
Confidence 3566766666667789999999999999999999999999999999999997 788999999999988766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|++|++||+|+... + ....+.+. .++.....+.+.+++|||++|.||.++|
T Consensus 108 ~~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 108 MRDALLLVFANKQDLPDA-M--KPHEIQEK----------------------LGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred hcCCcEEEEEECcCCccC-C--CHHHHHHH----------------------cCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 678999999999998642 2 22222221 2222223355778999999999999999
Q ss_pred HHHHH
Q psy3651 317 NAVKN 321 (334)
Q Consensus 317 ~~v~~ 321 (334)
+|+.+
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99865
No 16
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.81 E-value=1.3e-19 Score=155.64 Aligned_cols=130 Identities=24% Similarity=0.400 Sum_probs=102.3
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.+...+....+.+.+||++||+.++..|.+||++++++|||+|+++. .++.++.+++.+++..+.
T Consensus 29 ~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~~~~~~~ 98 (159)
T cd04150 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERIGEAREELQRMLNEDE 98 (159)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhcHH
Confidence 3566766666677789999999999999999999999999999999999997 789999999999987766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+... . ....+.. + ..+.....+.+.++.+||++|.||+++|
T Consensus 99 ~~~~piilv~NK~Dl~~~-~--~~~~i~~---------------------~-~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 99 LRDAVLLVFANKQDLPNA-M--SAAEVTD---------------------K-LGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred hcCCCEEEEEECCCCCCC-C--CHHHHHH---------------------H-hCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 678999999999998542 1 1111111 1 1222222356778899999999999999
Q ss_pred HHHHH
Q psy3651 317 NAVKN 321 (334)
Q Consensus 317 ~~v~~ 321 (334)
+|+.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 17
>KOG0075|consensus
Probab=99.81 E-value=1.3e-19 Score=150.61 Aligned_cols=133 Identities=20% Similarity=0.335 Sum_probs=116.6
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..||+|++...++-+++.+.+||+|||+.+|.+|..|++++++|+||+|.++. ..+.-|...+.+++..|
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~----------~k~~~sr~EL~~LL~k~ 118 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADP----------DKLEASRSELHDLLDKP 118 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCc----------ccchhhHHHHHHHhcch
Confidence 46899999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
...++|+++++||.|+..+ + ....+.+- +++....++.+-++.+||++..||+.+
T Consensus 119 ~l~gip~LVLGnK~d~~~A-L--~~~~li~r----------------------mgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 119 SLTGIPLLVLGNKIDLPGA-L--SKIALIER----------------------MGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred hhcCCcEEEecccccCccc-c--cHHHHHHH----------------------hCccccccceEEEEEEEEcCCccHHHH
Confidence 9999999999999999875 4 33333321 455555668899999999999999999
Q ss_pred HHHHHHHH
Q psy3651 316 FNAVKNTI 323 (334)
Q Consensus 316 f~~v~~~I 323 (334)
.+|+.+.-
T Consensus 174 ~~Wli~hs 181 (186)
T KOG0075|consen 174 LDWLIEHS 181 (186)
T ss_pred HHHHHHHh
Confidence 99998753
No 18
>KOG0092|consensus
Probab=99.81 E-value=3.6e-19 Score=154.41 Aligned_cols=145 Identities=17% Similarity=0.280 Sum_probs=113.6
Q ss_pred HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE--EEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651 130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT--IVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS 205 (334)
Q Consensus 130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~--~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl 205 (334)
+.|+.. ..|.+. ..||+|..... +.+.+ ++|.||||+||++++.+-+.||+|++++|.|+|+
T Consensus 22 V~Rfvk-------~~F~e~-------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDi 87 (200)
T KOG0092|consen 22 VLRFVK-------DQFHEN-------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDI 87 (200)
T ss_pred hhhhhh-------Cccccc-------cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEec
Confidence 456666 555543 36788866443 33444 8889999999999999999999999999999999
Q ss_pred CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL 285 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~ 285 (334)
++. .+|..+..|+.++-..-. +++-|.|+|||+||.+.| .++ .++|..|-.
T Consensus 88 t~~----------~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R----~V~--------------~~ea~~yAe 138 (200)
T KOG0092|consen 88 TDE----------ESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERR----EVE--------------FEEAQAYAE 138 (200)
T ss_pred ccH----------HHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcc----ccc--------------HHHHHHHHH
Confidence 998 899999999999876543 788899999999998743 222 233443333
Q ss_pred HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
+ .++.+++|||+++.||+++|..|.+.|....
T Consensus 139 ~----------~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 139 S----------QGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred h----------cCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 2 4577999999999999999999999887543
No 19
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=3.1e-19 Score=156.97 Aligned_cols=134 Identities=21% Similarity=0.386 Sum_probs=106.1
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|.+...+...++.+++||++||+.++..|.+||++++++|||+|+++. +++.++..++.++++....
T Consensus 47 ~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~----------~s~~~~~~~l~~~~~~~~~ 116 (182)
T PTZ00133 47 PTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR----------ERIGDAREELERMLSEDEL 116 (182)
T ss_pred CccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhCHhh
Confidence 566766666777889999999999999999999999999999999999997 7788888889988876666
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||.|+.+. + ....+... .++.....+.++++.|||+++.||+++|+
T Consensus 117 ~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 117 RDAVLLVFANKQDLPNA-M--STTEVTEK----------------------LGLHSVRQRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred cCCCEEEEEeCCCCCCC-C--CHHHHHHH----------------------hCCCcccCCcEEEEeeeCCCCCCHHHHHH
Confidence 78999999999998542 2 11122211 22222233567778999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 318 AVKNTILHR 326 (334)
Q Consensus 318 ~v~~~I~~~ 326 (334)
|+.+.+.++
T Consensus 172 ~l~~~i~~~ 180 (182)
T PTZ00133 172 WLSANIKKS 180 (182)
T ss_pred HHHHHHHHh
Confidence 999877664
No 20
>KOG0072|consensus
Probab=99.80 E-value=5.6e-20 Score=152.28 Aligned_cols=137 Identities=19% Similarity=0.322 Sum_probs=117.7
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
...||+|.+...+.+++.++++||.|||-+.|..|..||.+++++|||||.+|. .|+.-|...|-.++..
T Consensus 45 ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~----------dris~a~~el~~mL~E 114 (182)
T KOG0072|consen 45 TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDR----------DRISIAGVELYSMLQE 114 (182)
T ss_pred ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccch----------hhhhhhHHHHHHHhcc
Confidence 457999999999999999999999999999999999999999999999999999 7888999999999999
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
+.+.++.++||+||+|..... ..++.... +++.+.+++.+.++.+||+.|+++..
T Consensus 115 ~eLq~a~llv~anKqD~~~~~---t~~E~~~~----------------------L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 115 EELQHAKLLVFANKQDYSGAL---TRSEVLKM----------------------LGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred HhhcCceEEEEeccccchhhh---hHHHHHHH----------------------hChHHHhhheeEEEeeccccccCCcH
Confidence 999999999999999986652 22222111 34444455778999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 315 VFNAVKNTILHR 326 (334)
Q Consensus 315 vf~~v~~~I~~~ 326 (334)
.++|+.+.+.++
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
No 21
>KOG0078|consensus
Probab=99.80 E-value=4.3e-19 Score=156.30 Aligned_cols=145 Identities=23% Similarity=0.210 Sum_probs=113.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEe
Q psy3651 129 NWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS 204 (334)
Q Consensus 129 ~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~d 204 (334)
-+.|+.. ..|.++ ...|+||+.. .++++ .+++++|||+||+++|.+...||++|.+|+.|||
T Consensus 28 ~l~rf~d-------~~f~~~-------~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyD 93 (207)
T KOG0078|consen 28 LLLRFSD-------DSFNTS-------FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 93 (207)
T ss_pred hhhhhhh-------ccCcCC-------ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEE
Confidence 3567777 666664 3678998854 44444 4889999999999999999999999999999999
Q ss_pred CCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651 205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL 284 (334)
Q Consensus 205 ls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi 284 (334)
+++. .+++....|++.|-.+ ...++|++||+||+|+..+|. ++- +.+.
T Consensus 94 itne----------~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~----V~~--------------e~ge--- 141 (207)
T KOG0078|consen 94 ITNE----------KSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQ----VSK--------------ERGE--- 141 (207)
T ss_pred ccch----------HHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccccc----ccH--------------HHHH---
Confidence 9998 7888888877777655 345899999999999987543 111 1111
Q ss_pred HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
.+. ...++.+++|||+++.||.+.|..+.+.|+++
T Consensus 142 -----~lA--~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 142 -----ALA--REYGIKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred -----HHH--HHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 111 12468899999999999999999999999854
No 22
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=1.4e-18 Score=150.40 Aligned_cols=135 Identities=19% Similarity=0.317 Sum_probs=105.9
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....++.+++++.+||++|++.++..|.+++++++++|||+|+++. +++.++..++..+.+...
T Consensus 28 ~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~----------~s~~~~~~~~~~~~~~~~ 97 (169)
T cd04158 28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR----------DRVSEAHSELAKLLTEKE 97 (169)
T ss_pred CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHHhcChh
Confidence 3466766666777889999999999999999999999999999999999997 789999999999987766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~v 315 (334)
..+.|++|++||+|+..+ + ....+.++ ...... ..+.+.+.+|||+++.||+++
T Consensus 98 ~~~~piilv~NK~Dl~~~-~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 98 LRDALLLIFANKQDVAGA-L--SVEEMTEL----------------------LSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred hCCCCEEEEEeCcCcccC-C--CHHHHHHH----------------------hCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 677899999999998643 3 22222222 111110 123567889999999999999
Q ss_pred HHHHHHHHHHH
Q psy3651 316 FNAVKNTILHR 326 (334)
Q Consensus 316 f~~v~~~I~~~ 326 (334)
|+|+.+.+...
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99998876643
No 23
>KOG0094|consensus
Probab=99.78 E-value=6.3e-19 Score=153.09 Aligned_cols=132 Identities=19% Similarity=0.220 Sum_probs=105.9
Q ss_pred eeecceeEEE--EEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 157 KATKGITEFT--IVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 157 ~~T~Gi~~~~--~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
.+|+|++... +.+ +.+++++|||+||+++|.+.+.|++++.++|.|+|+++. ++|+..-+|.+.+.
T Consensus 52 qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~----------~Sfe~t~kWi~dv~ 121 (221)
T KOG0094|consen 52 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR----------NSFENTSKWIEDVR 121 (221)
T ss_pred cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc----------chHHHHHHHHHHHH
Confidence 4577888443 333 348899999999999999999999999999999999998 99999999999999
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
+.+...++-|+||+||.||..++- ....+ +...++..+..+.+|||+.|.||
T Consensus 122 ~e~gs~~viI~LVGnKtDL~dkrq----vs~eE------------------------g~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 122 RERGSDDVIIFLVGNKTDLSDKRQ----VSIEE------------------------GERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred hccCCCceEEEEEcccccccchhh----hhHHH------------------------HHHHHHHhCcEEEEecccCCCCH
Confidence 988777788999999999987632 11211 01112234567899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILHR 326 (334)
Q Consensus 313 ~~vf~~v~~~I~~~ 326 (334)
+.+|..|...+...
T Consensus 174 k~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 174 KQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHhccCc
Confidence 99999988776643
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.78 E-value=2.1e-18 Score=152.82 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=104.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+..... + .+..+.+.+++|||+||+.++..|..||++++++|+|+|+++.
T Consensus 26 ~~f~~~~~~t~~~~~~~~---~-----~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~---------- 87 (191)
T cd01875 26 NAFPKEYIPTVFDNYSAQ---T-----AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASP---------- 87 (191)
T ss_pred CCCCcCCCCceEeeeEEE---E-----EECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCH----------
Confidence 677788889876542211 1 1222347789999999999999999999999999999999998
Q ss_pred ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++++... |...+... ..++|++|++||.||..++- ....+.+. .-.....+.+.++.++ .+
T Consensus 88 ~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~--~~~~~~~~----~~~~v~~~~~~~~a~~---------~~ 150 (191)
T cd01875 88 SSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDAD--TLKKLKEQ----GQAPITPQQGGALAKQ---------IH 150 (191)
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChh--hHHHHhhc----cCCCCCHHHHHHHHHH---------cC
Confidence 67777654 44445432 35799999999999965421 11111110 0011223333322211 12
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
.+.+++|||+++.||+++|.++.+.++..+
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence 357899999999999999999999887653
No 25
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.78 E-value=2.9e-18 Score=152.11 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=93.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++||+.++..|..||++++++|+|+|+++. .++.+...|++++... .+++|+||++||.|
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~----------~Sf~~~~~w~~~i~~~--~~~~piilVGNK~D 121 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR----------WSFDGIDRWIKEIDEH--APGVPKILVGNRLH 121 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECcc
Confidence 37899999999999999999999999999999999998 8888888888888554 36899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|...+. + ..+.+..+.+ ..++.+++|||+++.||+++|+++.+.++.+
T Consensus 122 L~~~~~------v------------~~~~~~~~a~----------~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 122 LAFKRQ------V------------ATEQAQAYAE----------RNGMTFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred chhccC------C------------CHHHHHHHHH----------HcCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 965421 1 1122322221 2346799999999999999999999988754
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=1.1e-18 Score=152.97 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=104.6
Q ss_pred CCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651 138 NSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217 (334)
Q Consensus 138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~ 217 (334)
.+.|.++|.||..+..... ..+.-..+++++||++||+.+++++..||++++++|+|+|+++.
T Consensus 23 ~~~f~~~~~~Ti~~~~~~~--------~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~--------- 85 (176)
T cd04133 23 SNKFPTDYIPTVFDNFSAN--------VSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR--------- 85 (176)
T ss_pred cCCCCCCCCCcceeeeEEE--------EEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH---------
Confidence 3677788999987654221 11122347899999999999999999999999999999999998
Q ss_pred cccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 218 TNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 218 ~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.+++... .|+..+.+.. .++|++|++||+||..++. . +..+ ........+.+..+.+ .
T Consensus 86 -~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~--~--~~~~----~~~~~v~~~~~~~~a~----------~ 144 (176)
T cd04133 86 -ASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQ--Y--LADH----PGASPITTAQGEELRK----------Q 144 (176)
T ss_pred -HHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChh--h--hhhc----cCCCCCCHHHHHHHHH----------H
Confidence 7777774 5777765543 5799999999999966431 0 0000 0001122333432222 1
Q ss_pred CCe-EEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 297 KPL-FHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 297 ~~i-~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
.++ .+++|||+++.||+++|+.+.+.++
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 233 5889999999999999999998764
No 27
>PTZ00099 rab6; Provisional
Probab=99.78 E-value=3.4e-18 Score=149.94 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCcccccceeeeecceeEE--EEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhh
Q psy3651 138 NSPLFQDYIPSNKDILHARKATKGITEF--TIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213 (334)
Q Consensus 138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~--~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ 213 (334)
.+.|.+.|.||.. ++.. .+.+ +.+++.||||+||+.++..|..||++++++|+|+|+++.
T Consensus 2 ~~~F~~~~~~Tig-----------~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~----- 65 (176)
T PTZ00099 2 YDTFDNNYQSTIG-----------IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR----- 65 (176)
T ss_pred CCCcCCCCCCccc-----------eEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCH-----
Confidence 3567788888764 2221 1222 347899999999999999999999999999999999997
Q ss_pred cccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc
Q psy3651 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR 293 (334)
Q Consensus 214 ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~ 293 (334)
.++.+...|+..+.... ..++|++|++||+||...+. .. .+.+..+..
T Consensus 66 -----~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~----v~--------------~~e~~~~~~-------- 113 (176)
T PTZ00099 66 -----QSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRK----VT--------------YEEGMQKAQ-------- 113 (176)
T ss_pred -----HHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccC----CC--------------HHHHHHHHH--------
Confidence 77888888888887653 35789999999999865321 11 111111111
Q ss_pred CCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 294 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 294 ~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
..++.+++|||+++.||.++|+++.+.+.+
T Consensus 114 --~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 114 --EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred --HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 123567899999999999999999988754
No 28
>KOG0076|consensus
Probab=99.78 E-value=4e-19 Score=151.54 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=142.6
Q ss_pred HHHHhccCHHHHHHHHhccccccCcccc--hhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcce
Q psy3651 97 ELKSLWDDVAIRQAFERRSEYQLGDSIQ--YFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPF 174 (334)
Q Consensus 97 ~i~~lW~d~~iq~~~~~~~~~~l~d~~~--yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~ 174 (334)
.+..||+--.-++.|.-- +-=+|+|+ -|++..+-... ..|.--. .....||+|.+..++.+.+..+
T Consensus 4 l~~gl~~~~~~Ke~y~vl--IlgldnAGKttfLe~~Kt~~~-------~~~~~l~---~~ki~~tvgLnig~i~v~~~~l 71 (197)
T KOG0076|consen 4 LMSGLYKYMFKKEDYSVL--ILGLDNAGKTTFLEALKTDFS-------KAYGGLN---PSKITPTVGLNIGTIEVCNAPL 71 (197)
T ss_pred HHHHHHHHHhhhhhhhhe--eeccccCCchhHHHHHHHHHH-------hhhcCCC---HHHeecccceeecceeecccee
Confidence 456677643323322210 11167777 68888877776 4454322 1235789999999999999999
Q ss_pred eeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 175 LFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 175 ~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
.+||.|||++-|++|..||..+++|||++|.++. .|++++...|+.++.+....++|+++.+||+|+..+
T Consensus 72 ~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~----------eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 72 SFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDR----------ERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred EEEEcCChHHHHHHHHHHHHHhceeEEeecCCCH----------HHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999999999999999998 899999999999999999999999999999998775
Q ss_pred hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 255 KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 255 ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
. ...++..+| ......+.+...+..+||.+|+||++...|+...+-++
T Consensus 142 -~--~~~El~~~~---------------------~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 142 -M--EAAELDGVF---------------------GLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred -h--hHHHHHHHh---------------------hhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2 344454443 11112234667788999999999999999999988765
No 29
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=2.5e-18 Score=148.84 Aligned_cols=133 Identities=17% Similarity=0.271 Sum_probs=103.4
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.....+..++.++++||++|+..++..|.+||++++++|||+|+++. .++.++..++..+.+.+.
T Consensus 28 ~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~----------~s~~~~~~~l~~l~~~~~ 97 (167)
T cd04161 28 APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD----------DRVQEVKEILRELLQHPR 97 (167)
T ss_pred cCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch----------hHHHHHHHHHHHHHcCcc
Confidence 3456666667777889999999999999999999999999999999999997 789999999999988766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC------c
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT------E 310 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~------~ 310 (334)
..+.|++||+||+|+...+ ....+.+.+- . ..+.+.....+++..|||++| .
T Consensus 98 ~~~~piliv~NK~Dl~~~~---~~~~i~~~~~---l----------------~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 98 VSGKPILVLANKQDKKNAL---LGADVIEYLS---L----------------EKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred ccCCcEEEEEeCCCCcCCC---CHHHHHHhcC---c----------------ccccCCCCceEEEEEeEceeCCCCcccc
Confidence 6789999999999986643 2223333210 0 011111124577888999998 8
Q ss_pred hHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKN 321 (334)
Q Consensus 311 nI~~vf~~v~~ 321 (334)
|+.+.|+|+..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 30
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.76 E-value=4e-18 Score=152.57 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=91.1
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+.++++|||++||+.++..|..||++++++|+|+|+++. .++.....|...+.... .++|++||+||+
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~----------~S~~~i~~w~~~i~~~~--~~~piilvgNK~ 109 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR----------VTYKNVPNWHRDLVRVC--ENIPIVLCGNKV 109 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHhC--CCCCEEEEEECc
Confidence 458899999999999999999999999999999999997 67777777777776542 579999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..+.+ .. +.. .+ . ....+.+++|||+++.||.++|.++.+.+++.
T Consensus 110 Dl~~~~v--~~-----------------~~~-~~-----~-----~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 110 DVKDRKV--KA-----------------KSI-TF-----H-----RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred ccccccC--CH-----------------HHH-HH-----H-----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9854322 10 010 11 0 12457789999999999999999999988764
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.76 E-value=1.3e-17 Score=145.17 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=101.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..+.... .+.+ ..+.+++||++|+..++..|..+|.+++++|+|+|+++.
T Consensus 25 ~~f~~~~~~t~~~~~~~----------~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~-------- 86 (172)
T cd04141 25 HSFPDYHDPTIEDAYKQ----------QARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDR-------- 86 (172)
T ss_pred CCCCCCcCCcccceEEE----------EEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCch--------
Confidence 56667788876543221 1222 236789999999999999999999999999999999997
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.....|+..+.......++|++|++||+|+..++. +. .+.+..+. +.
T Consensus 87 --~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~------v~------------~~~~~~~a----------~~ 136 (172)
T cd04141 87 --HSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ------VT------------TEEGRNLA----------RE 136 (172)
T ss_pred --hHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc------cC------------HHHHHHHH----------HH
Confidence 67777766655554433345789999999999865421 11 11121111 12
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
.++.+++|||+++.||+++|+++.+.+.+.
T Consensus 137 ~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 137 FNCPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred hCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999988764
No 32
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=7.2e-18 Score=143.53 Aligned_cols=130 Identities=22% Similarity=0.340 Sum_probs=99.3
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....+..++.++++||++|++.++..|..|+++++++|||+|+++. .++..+..+++.+.+.+.
T Consensus 30 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~~~~~~~ 99 (162)
T cd04157 30 VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR----------LRLVVVKDELELLLNHPD 99 (162)
T ss_pred cCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH----------HHHHHHHHHHHHHHcCcc
Confidence 4566766666667788999999999999999999999999999999999997 677777788888877654
Q ss_pred C--CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 237 F--RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 237 ~--~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
+ .+.|++|++||+|+..+. ....+.+. .++.......+.++.|||+++.||++
T Consensus 100 ~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~----------------------l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 100 IKHRRVPILFFANKMDLPDAL---TAVKITQL----------------------LGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred cccCCCCEEEEEeCccccCCC---CHHHHHHH----------------------hCCccccCceEEEEEeeCCCCCchHH
Confidence 4 478999999999986532 11112211 11111122456788999999999999
Q ss_pred HHHHHHH
Q psy3651 315 VFNAVKN 321 (334)
Q Consensus 315 vf~~v~~ 321 (334)
+|+|+.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
No 33
>KOG0093|consensus
Probab=99.75 E-value=1.2e-17 Score=138.95 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe----eCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651 130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS 205 (334)
Q Consensus 130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl 205 (334)
+-|.+. ..|.| +...|+||+...-++ +.+++++|||+||++.|.....||+++.++|+++|+
T Consensus 38 l~ry~d-------dSFt~-------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDi 103 (193)
T KOG0093|consen 38 LFRYAD-------DSFTS-------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 103 (193)
T ss_pred hHHhhc-------ccccc-------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEec
Confidence 446666 67777 567899988443332 348999999999999999999999999999999999
Q ss_pred CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL 285 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~ 285 (334)
++- ....|++-|-..+..-.-.++|+||++||||+-.|++ -. .+.+..++.
T Consensus 104 tNe-----------eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv--is----------------~e~g~~l~~ 154 (193)
T KOG0093|consen 104 TNE-----------ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV--IS----------------HERGRQLAD 154 (193)
T ss_pred CCH-----------HHHHHHHHHHHHheeeeccCceEEEEecccCCcccee--ee----------------HHHHHHHHH
Confidence 995 2333444444444443447899999999999988875 11 122222222
Q ss_pred HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhc
Q psy3651 286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDL 331 (334)
Q Consensus 286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~ 331 (334)
+ .++.+++|||+.+.||+.+|+.+.+.|-++...++
T Consensus 155 ~----------LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 155 Q----------LGFEFFETSAKENINVKQVFERLVDIICDKMSESL 190 (193)
T ss_pred H----------hChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence 2 35678999999999999999999999987755443
No 34
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.75 E-value=1.7e-17 Score=146.22 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=101.4
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.++|.||..+... .++ .+.-..+++++|||+||+.++..|..||++++++|+|+|+++.
T Consensus 28 ~~f~~~~~pT~~~~~~---~~~-----~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~---------- 89 (182)
T cd04172 28 DCFPENYVPTVFENYT---ASF-----EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP---------- 89 (182)
T ss_pred CCCCCccCCceeeeeE---EEE-----EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH----------
Confidence 6677889998765321 111 1222347899999999999999999999999999999999997
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++.+.+ .|...+... .+++|++|++||+||....- ....+.. -...+-+.+++.++.++ .
T Consensus 90 ~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~--~~~~~~~----~~~~~v~~~~~~~~a~~----------~ 151 (182)
T cd04172 90 ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLT--TLVELSN----HRQTPVSYDQGANMAKQ----------I 151 (182)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChh--hHHHHHh----cCCCCCCHHHHHHHHHH----------c
Confidence 6777764 555555443 35789999999999854210 0000000 00011233444333221 2
Q ss_pred C-eEEEEEeeecCch-HHHHHHHHHHHHH
Q psy3651 298 P-LFHHFTTAVDTEN-IKIVFNAVKNTIL 324 (334)
Q Consensus 298 ~-i~~~~tsA~d~~n-I~~vf~~v~~~I~ 324 (334)
+ +.+++|||+++.| |+++|..+...++
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 3 4789999999998 9999999888654
No 35
>KOG0087|consensus
Probab=99.75 E-value=6.5e-18 Score=148.52 Aligned_cols=149 Identities=19% Similarity=0.248 Sum_probs=115.7
Q ss_pred hhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEE--Eee--CcceeeeecCCcccccccccccccCCCeEEEEE
Q psy3651 128 DNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTI--VIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLV 203 (334)
Q Consensus 128 ~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~--~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~ 203 (334)
+.+.|+.. .+|.|- ..+|+|+...+. .++ -++.+||||+||+++|.....||+++.+++.|+
T Consensus 29 nLlsRftr-------nEF~~~-------SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVY 94 (222)
T KOG0087|consen 29 NLLSRFTR-------NEFSLE-------SKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 94 (222)
T ss_pred HHHHHhcc-------cccCcc-------cccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEE
Confidence 56788888 777773 367899885543 333 488999999999999999999999999999999
Q ss_pred eCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHH
Q psy3651 204 SSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283 (334)
Q Consensus 204 dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~f 283 (334)
|++.. ..++....|++++..+ ..++++|+|++||+||-..+ .++-. +++.|
T Consensus 95 DITr~----------~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lr----aV~te--------------~~k~~ 145 (222)
T KOG0087|consen 95 DITRR----------QTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLR----AVPTE--------------DGKAF 145 (222)
T ss_pred echhH----------HHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhcc----ccchh--------------hhHhH
Confidence 99997 6777777788887765 34789999999999996632 22222 22211
Q ss_pred HHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhh
Q psy3651 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 329 (334)
Q Consensus 284 i~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~ 329 (334)
- ....+++++|||.+..||+.+|..+...|.+...+
T Consensus 146 A----------e~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 146 A----------EKEGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred H----------HhcCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 1 12457899999999999999999999999876543
No 36
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.75 E-value=2.3e-17 Score=144.07 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=100.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..+.... .+.++ .+++++||++||+.++..|..+|++++++|+|+|+++.
T Consensus 24 ~~f~~~~~pt~~~~~~~----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~-------- 85 (175)
T cd01874 24 NKFPSEYVPTVFDNYAV----------TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP-------- 85 (175)
T ss_pred CCCCCCCCCceeeeeEE----------EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCH--------
Confidence 56767888887543221 12233 36788999999999999999999999999999999997
Q ss_pred ccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 217 RTNRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 217 ~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.++.+... |...+... ..++|++|++||+|+..+.. ....+ ..+....-..+.+.++.++
T Consensus 86 --~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~--~~~~l----~~~~~~~v~~~~~~~~a~~--------- 146 (175)
T cd01874 86 --SSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPS--TIEKL----AKNKQKPITPETGEKLARD--------- 146 (175)
T ss_pred --HHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChh--hHHHh----hhccCCCcCHHHHHHHHHH---------
Confidence 66766654 54554432 25789999999999855321 11111 1111122333444333221
Q ss_pred CCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 296 KKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
.+.+.+++|||+++.||+++|+.+.+.
T Consensus 147 ~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 147 LKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 134678999999999999999988764
No 37
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=8e-18 Score=153.87 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=104.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+.... ++ .+.-..+.+.||||+||+.++..+..||++++++|+|+|+++.
T Consensus 36 ~~F~~~y~pTi~~~~~~---~i-----~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~---------- 97 (232)
T cd04174 36 DCYPETYVPTVFENYTA---GL-----ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP---------- 97 (232)
T ss_pred CCCCCCcCCceeeeeEE---EE-----EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCCh----------
Confidence 66778899987543211 11 1222347899999999999999999999999999999999998
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++...+ .|+..+... ..+.|++||+||+||..+.- .+... ++=....-..+++.+|.++ .
T Consensus 98 ~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~-----~~~~l-~~~~~~~Vs~~e~~~~a~~----------~ 159 (232)
T cd04174 98 ETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLS-----TLMEL-SNQKQAPISYEQGCALAKQ----------L 159 (232)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccc-----hhhhh-ccccCCcCCHHHHHHHHHH----------c
Confidence 7777654 555555443 25789999999999854210 01000 0000011233444433322 2
Q ss_pred Ce-EEEEEeeecCc-hHHHHHHHHHHHHHHHhhh
Q psy3651 298 PL-FHHFTTAVDTE-NIKIVFNAVKNTILHRNLR 329 (334)
Q Consensus 298 ~i-~~~~tsA~d~~-nI~~vf~~v~~~I~~~~l~ 329 (334)
++ .+++|||++++ ||+++|..+...++++.++
T Consensus 160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 160 GAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred CCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 34 57899999997 8999999999998876543
No 38
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.74 E-value=1.3e-17 Score=144.01 Aligned_cols=127 Identities=19% Similarity=0.386 Sum_probs=96.3
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|.....+..+++++.+||++||..+++.|.+|+++++++|||+|+++. .++.++..++..+....
T Consensus 30 pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~----------~s~~~~~~~l~~~~~~~-- 97 (164)
T cd04162 30 PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS----------ERLPLARQELHQLLQHP-- 97 (164)
T ss_pred ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCC--
Confidence 445555555666788999999999999999999999999999999999997 67888888888887643
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec------Cch
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD------TEN 311 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d------~~n 311 (334)
.++|++|++||+|+..++ ....+...+ + + ..+ ..++++++++|||++ ++|
T Consensus 98 ~~~piilv~NK~Dl~~~~---~~~~i~~~~----~-------~--------~~~--~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 98 PDLPLVVLANKQDLPAAR---SVQEIHKEL----E-------L--------EPI--ARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred CCCcEEEEEeCcCCcCCC---CHHHHHHHh----C-------C--------hhh--cCCCceEEEEeeecCCCChhHHHH
Confidence 689999999999986653 222222210 0 0 111 123568888999998 999
Q ss_pred HHHHHHHHH
Q psy3651 312 IKIVFNAVK 320 (334)
Q Consensus 312 I~~vf~~v~ 320 (334)
|+++|+.+.
T Consensus 154 v~~~~~~~~ 162 (164)
T cd04162 154 VKDLLSQLI 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998765
No 39
>KOG0098|consensus
Probab=99.74 E-value=9.6e-18 Score=144.73 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=110.9
Q ss_pred HHHHHhhhCCCCCCCCCCCcccccceeeeeccee----EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651 130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGIT----EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS 205 (334)
Q Consensus 130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~----~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl 205 (334)
+.|++. ..|+|-. ..|+|+. ..+++-+.+++++|||+||+++|+....||+++.++|+|+|+
T Consensus 23 llrf~~-------krF~~~h-------d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydi 88 (216)
T KOG0098|consen 23 LLRFTD-------KRFQPVH-------DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDI 88 (216)
T ss_pred HHHHhc-------cCccccc-------cceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEc
Confidence 567777 7777743 3688877 334444569999999999999999999999999999999999
Q ss_pred CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL 285 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~ 285 (334)
+.. .++..--.|++.+.++. .+|..|+|++||+||...+- + +.++...|-+
T Consensus 89 t~r----------~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~------V------------s~EEGeaFA~ 139 (216)
T KOG0098|consen 89 TRR----------ESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARRE------V------------SKEEGEAFAR 139 (216)
T ss_pred cch----------hhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcccc------c------------cHHHHHHHHH
Confidence 998 55555556666666543 47899999999999976532 1 1223322332
Q ss_pred HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
++.+-+.+|||++++||+++|......|.++.
T Consensus 140 ----------ehgLifmETSakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 140 ----------EHGLIFMETSAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred ----------HcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 35677789999999999999999999998764
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.74 E-value=3.7e-17 Score=140.06 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=102.4
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..+... ..+.++ .+.+++||++||+.++.+|..++++++++|+|+|+++.
T Consensus 24 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------- 85 (164)
T cd04175 24 GIFVEKYDPTIEDSYR----------KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQ-------- 85 (164)
T ss_pred CCCCcccCCcchheEE----------EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCH--------
Confidence 4566778887755321 123333 46788999999999999999999999999999999987
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+..+++..+.+.....+.|++|++||+|+..++. . ..+.+..+.+ .
T Consensus 86 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~----------------~~~~~~~~~~----------~ 135 (164)
T cd04175 86 --STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--V----------------GKEQGQNLAR----------Q 135 (164)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE--E----------------cHHHHHHHHH----------H
Confidence 67888888888888765567899999999999865432 0 0111111111 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+.+++|||+++.||+++|.++.+.+
T Consensus 136 ~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 235789999999999999999998765
No 41
>KOG0079|consensus
Probab=99.73 E-value=1.2e-17 Score=139.07 Aligned_cols=135 Identities=20% Similarity=0.294 Sum_probs=110.7
Q ss_pred eeeeecceeE--EEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 155 ARKATKGITE--FTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 155 ~~~~T~Gi~~--~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
++..|+|++. .++++. .++++|||++||+++|.+...||++.+++|.|+|+++- .++.....|+++
T Consensus 36 sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~----------ESF~Nv~rWLee 105 (198)
T KOG0079|consen 36 SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG----------ESFNNVKRWLEE 105 (198)
T ss_pred ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcch----------hhhHhHHHHHHH
Confidence 4556788773 344444 48999999999999999999999999999999999997 899999999999
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+-++- ...|-+||+||.|+.+.|+ - +.++|..|... .++.+|+|||++.+
T Consensus 106 i~~nc--dsv~~vLVGNK~d~~~Rrv--V----------------~t~dAr~~A~~----------mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 106 IRNNC--DSVPKVLVGNKNDDPERRV--V----------------DTEDARAFALQ----------MGIELFETSAKENE 155 (198)
T ss_pred HHhcC--ccccceecccCCCCcccee--e----------------ehHHHHHHHHh----------cCchheehhhhhcc
Confidence 98763 4789999999999998876 1 23344444333 46889999999999
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q psy3651 311 NIKIVFNAVKNTILHRNLR 329 (334)
Q Consensus 311 nI~~vf~~v~~~I~~~~l~ 329 (334)
|++.+|.-|.+.+++..+.
T Consensus 156 NvE~mF~cit~qvl~~k~r 174 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQAKLR 174 (198)
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 42
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=2.2e-17 Score=143.78 Aligned_cols=130 Identities=21% Similarity=0.348 Sum_probs=102.1
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.+...+.+++..+.+||++|+..++..|..+|++++++|||+|+++. +++.++..++.+++++..
T Consensus 44 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~----------~~~~~~~~~l~~~~~~~~ 113 (174)
T cd04153 44 SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDR----------ERLPLTKEELYKMLAHED 113 (174)
T ss_pred CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchh
Confidence 3566776667777889999999999999999999999999999999999987 678888888888888766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|++|++||+|+... + ....+.+. ..+.....+.+.++++||+++.||+++|
T Consensus 114 ~~~~p~viv~NK~Dl~~~-~--~~~~i~~~----------------------l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 114 LRKAVLLVLANKQDLKGA-M--TPAEISES----------------------LGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred hcCCCEEEEEECCCCCCC-C--CHHHHHHH----------------------hCcccccCCceEEEecccCCCCCHHHHH
Confidence 778999999999998652 2 11112111 1111122355778999999999999999
Q ss_pred HHHHH
Q psy3651 317 NAVKN 321 (334)
Q Consensus 317 ~~v~~ 321 (334)
+++.+
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99864
No 43
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.73 E-value=4e-17 Score=143.43 Aligned_cols=133 Identities=26% Similarity=0.369 Sum_probs=99.0
Q ss_pred eecceeEEEEEe-----eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 158 ATKGITEFTIVI-----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 158 ~T~Gi~~~~~~~-----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
||+|+....+.+ .++.+.+|||+|++.++..|..|+++++++|||+|+++. .++.++..++..+.
T Consensus 33 ~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~i~ 102 (183)
T cd04152 33 PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----------ERMEEAKTELHKIT 102 (183)
T ss_pred CccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHH
Confidence 555655444433 357899999999999999999999999999999999997 67777777777777
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCch
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~n 311 (334)
......+.|++|++||+|+... . ....+.. +.++... ....+++++|||++++|
T Consensus 103 ~~~~~~~~p~iiv~NK~D~~~~-~--~~~~~~~----------------------~~~~~~~~~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 103 RFSENQGVPVLVLANKQDLPNA-L--SVSEVEK----------------------LLALHELSASTPWHVQPACAIIGEG 157 (183)
T ss_pred hhhhcCCCcEEEEEECcCcccc-C--CHHHHHH----------------------HhCccccCCCCceEEEEeecccCCC
Confidence 6544567899999999998643 2 1111211 1222111 12346788999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTILH 325 (334)
Q Consensus 312 I~~vf~~v~~~I~~ 325 (334)
|+++|+++.+.+++
T Consensus 158 i~~l~~~l~~~l~~ 171 (183)
T cd04152 158 LQEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 44
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.73 E-value=1.6e-17 Score=144.16 Aligned_cols=130 Identities=21% Similarity=0.308 Sum_probs=101.5
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....+.+++..+.+||++||+.++..|..+|++++++|||+|+++. .++.+...++..+++...
T Consensus 43 ~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 112 (173)
T cd04154 43 SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDR----------LRLDDCKRELKELLQEER 112 (173)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhChh
Confidence 3566766667777788999999999999999999999999999999999997 678888888888887655
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+.+.. ....+.+. ..+.....+.+.+++|||++|+||.++|
T Consensus 113 ~~~~p~iiv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 113 LAGATLLILANKQDLPGAL---SEEEIREA----------------------LELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred hcCCCEEEEEECcccccCC---CHHHHHHH----------------------hCccccCCCceEEEeccCCCCcCHHHHH
Confidence 6789999999999986531 11112221 1111112356789999999999999999
Q ss_pred HHHHH
Q psy3651 317 NAVKN 321 (334)
Q Consensus 317 ~~v~~ 321 (334)
+++.+
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 99864
No 45
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.73 E-value=2.9e-17 Score=139.99 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=100.4
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..|.... .+.++ .+.+++||++||+.++..|..|+++++++|+|+|+++.
T Consensus 24 ~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~-------- 85 (163)
T cd04136 24 GIFVEKYDPTIEDSYRK----------QIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQ-------- 85 (163)
T ss_pred CCCCcccCCchhhhEEE----------EEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCH--------
Confidence 55667788877544221 22222 36788999999999999999999999999999999997
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+...+++.+.+.....+.|++|++||+|+..++. ... +.+..+. + .
T Consensus 86 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~--------------~~~~~~~--------~--~ 135 (163)
T cd04136 86 --SSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV----VSR--------------EEGQALA--------R--Q 135 (163)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----ecH--------------HHHHHHH--------H--H
Confidence 67777888888877655456789999999999865321 111 1111111 1 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+.+++|||+++.||.++|+++.+.+
T Consensus 136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 136 WGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 226789999999999999999998765
No 46
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=2.1e-17 Score=141.05 Aligned_cols=129 Identities=22% Similarity=0.371 Sum_probs=97.9
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|.+...+++.+.++++||++|+..++..|..|+++++++|+|+|+++. .++.....++..+++....
T Consensus 29 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 98 (158)
T cd04151 29 PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR----------DRLGTAKEELHAMLEEEEL 98 (158)
T ss_pred CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchhh
Confidence 566766666777889999999999999999999999999999999999997 5666666777777665556
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+.... ....+... ..........+.+++|||+++.||+++|+
T Consensus 99 ~~~piiiv~nK~Dl~~~~---~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 99 KGAVLLVFANKQDMPGAL---SEAEISEK----------------------LGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred cCCcEEEEEeCCCCCCCC---CHHHHHHH----------------------hCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 689999999999986431 11111111 11111122446789999999999999999
Q ss_pred HHHH
Q psy3651 318 AVKN 321 (334)
Q Consensus 318 ~v~~ 321 (334)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 47
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.72 E-value=7.5e-17 Score=140.73 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=101.0
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+..... ..+..+.+.+.+||++||+.++..|..++.+++++|+|+|+++.
T Consensus 24 ~~f~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~---------- 85 (174)
T cd01871 24 NAFPGEYIPTVFDNYSAN--------VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP---------- 85 (174)
T ss_pred CCCCCcCCCcceeeeEEE--------EEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCH----------
Confidence 667788999876542211 11222346788999999999999999999999999999999997
Q ss_pred ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
+++.+... |+..+... ..++|++|++||+||...+. ....+... ....-..+++.++.++. +
T Consensus 86 ~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~ 148 (174)
T cd01871 86 ASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKEI---------G 148 (174)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChh--hHHHHhhc----cCCCCCHHHHHHHHHHc---------C
Confidence 67777654 44444433 35799999999999965432 22222211 01112334443232211 2
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
.+.+++|||+++.||+++|+.+.+.
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHHh
Confidence 3578999999999999999988763
No 48
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=1.2e-16 Score=142.46 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=90.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh---cCCCCCcEEEEEe
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN---VIFRNVSFILFLN 247 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~---~~~~~~piiL~lN 247 (334)
.+.+.+||++||+.++..|..+|++++++|+|+|+++. .++.++..|+..+.+. +...++|++|++|
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~----------~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRP----------STFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 47789999999999999999999999999999999997 7777777777666432 2236789999999
Q ss_pred CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+|+..++. . ..+.+.++... .....+++|||+++.||.++|+++.+.+++.
T Consensus 119 K~Dl~~~~~----~--------------~~~~~~~~~~~---------~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 119 KCDLKKRLA----K--------------DGEQMDQFCKE---------NGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCcccccc----c--------------CHHHHHHHHHH---------cCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999964221 0 11122212211 1125689999999999999999999988764
No 49
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=9.1e-17 Score=140.99 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=101.0
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.++|.||..+... .++ .+.-..+++++|||+||+.++..+..||++++++|+|+|+++.
T Consensus 24 ~~f~~~~~~t~~~~~~---~~~-----~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~---------- 85 (178)
T cd04131 24 DCYPETYVPTVFENYT---ASF-----EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP---------- 85 (178)
T ss_pred CcCCCCcCCceEEEEE---EEE-----EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCCh----------
Confidence 5677889998754321 111 1122347799999999999999999999999999999999997
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++++.+ .|...+... .+++|++||+||+||..+.- ....+.. ....+-..+++.++.++ .
T Consensus 86 ~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~--~~~~~~~----~~~~~v~~~e~~~~a~~----------~ 147 (178)
T cd04131 86 ETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLS--TLMELSH----QRQAPVSYEQGCAIAKQ----------L 147 (178)
T ss_pred hhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChh--HHHHHHh----cCCCCCCHHHHHHHHHH----------h
Confidence 7777754 555555443 25789999999999854210 0001110 01112234444433322 2
Q ss_pred Ce-EEEEEeeecCch-HHHHHHHHHHHHH
Q psy3651 298 PL-FHHFTTAVDTEN-IKIVFNAVKNTIL 324 (334)
Q Consensus 298 ~i-~~~~tsA~d~~n-I~~vf~~v~~~I~ 324 (334)
++ .+++|||++++| |+++|..+....+
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 33 689999999995 9999999888654
No 50
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=1.2e-16 Score=137.39 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=89.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+++.+||++||+.++..|..++++++++|+|+|+++. .+++....|+..+.+.. ..++|++|++||+|
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~D 118 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLT-NPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEECcc
Confidence 46789999999999999999999999999999999997 66777777777665432 35689999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++. + +.+.+.++.. ..++.+++|||+++.||.++|.++...+.+
T Consensus 119 l~~~~~------~------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 119 LEAQRD------V------------TYEEAKQFAD----------ENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred cccccC------c------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 966432 0 1122221211 134678999999999999999999988765
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.72 E-value=1.9e-16 Score=143.76 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=106.9
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|.......++.+.+.+||++||+.++..|..||++++++|+|+|+++. .++.+...+|..+... ..
T Consensus 30 ~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~----------~Sf~~l~~~~~~l~~~-~~ 98 (220)
T cd04126 30 STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV----------QSLEELEDRFLGLTDT-AN 98 (220)
T ss_pred CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cC
Confidence 455555444455677899999999999999999999999999999999997 6788887888887754 34
Q ss_pred CCCcEEEEEeCCCcchhhhcc--ccchhhhhCCCCCCCCccHHHHHHHHHHHHHhh---cc--CCCCCeEEEEEeeecCc
Q psy3651 238 RNVSFILFLNKTDLLAEKLRT--SKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAV---KR--DEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~--~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l---~~--~~~~~i~~~~tsA~d~~ 310 (334)
.++|+|||+||+||....... ...+ ...-+.........+++..+.++. ... .. .+...+.+++|||++|.
T Consensus 99 ~~~piIlVgNK~DL~~~~~~~~~~~~~-~~~~~~~~~r~v~~~e~~~~a~~~-~~~~~~~~~~~~~~~~~~~E~SA~tg~ 176 (220)
T cd04126 99 EDCLFAVVGNKLDLTEEGALAGQEKDA-GDRVSPEDQRQVTLEDAKAFYKRI-NKYKMLDEDLSPAAEKMCFETSAKTGY 176 (220)
T ss_pred CCCcEEEEEECcccccccccccccccc-cccccccccccCCHHHHHHHHHHh-CccccccccccccccceEEEeeCCCCC
Confidence 678999999999996521100 0000 000001111223455665555432 100 00 01123678999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy3651 311 NIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 311 nI~~vf~~v~~~I~~~~l 328 (334)
||+++|..+.+.++...+
T Consensus 177 ~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 177 NVDELFEYLFNLVLPLIL 194 (220)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 52
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.72 E-value=1.2e-16 Score=138.98 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=92.0
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+++||++||+.++..|..++++++++|+|+|+++. .++.+...|+..+.......+.|++|++||+|+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNE----------QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 6789999999999999999999999999999999987 677777788887766544567899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
..++. . ..+.+.++..+ .++.+++|||+++.||+++|+++.+.++++
T Consensus 133 ~~~~~--v----------------~~~~~~~~~~~----------~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 133 EDQRQ--V----------------SEEQAKALADK----------YGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred hhcCc--c----------------CHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 65421 0 11122212111 235689999999999999999999988754
No 53
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=4.4e-17 Score=147.61 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=90.7
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+.+++++||++||+.++..|..||++++++|+|+|+++. .++.....|+..+... ..++|++||+||+
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~----------~s~~~i~~w~~~i~~~--~~~~piilvgNK~ 127 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCH----------HHHHHHHHHHHHHHHh--CCCCcEEEEEEch
Confidence 347899999999999999999999999999999999997 6777777777777653 3679999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+....+ .. +.+ .+ .. .+.+.+++|||+++.||.++|.++.+.+++.
T Consensus 128 Dl~~~~v--~~-----------------~~~-~~-----~~-----~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 128 DVKNRQV--KA-----------------KQV-TF-----HR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred hhhhccC--CH-----------------HHH-HH-----HH-----hcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 9854322 11 111 11 11 2346789999999999999999999988754
No 54
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=6.3e-17 Score=138.72 Aligned_cols=133 Identities=23% Similarity=0.385 Sum_probs=105.2
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..||+|++...+.+++..+.+||++||+.++..|..++.+++++|||+|.++. ..+.+...++..+.+..
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~----------~~~~~~~~~~~~~~~~~ 103 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDR----------ERFEESKSALEKVLRNE 103 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchH----------HHHHHHHHHHHHHHhCh
Confidence 45678888888888899999999999999999999999999999999999986 67888888999988876
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
...+.|++|++||+|+... . ....+..++.++. .. .....+.++.+||+++.|++++
T Consensus 104 ~~~~~p~ilv~NK~D~~~~-~--~~~~~~~~~~~~~-----------------~~---~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 104 ALEGVPLLILANKQDLPDA-L--SVEEIKEVFQDKA-----------------EE---IGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred hhcCCCEEEEEEccccccC-C--CHHHHHHHhcccc-----------------cc---ccCCceEEEEeeCCCCcCHHHH
Confidence 6678999999999998653 2 2222333221111 00 1124578999999999999999
Q ss_pred HHHHHH
Q psy3651 316 FNAVKN 321 (334)
Q Consensus 316 f~~v~~ 321 (334)
|+|+.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
No 55
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=1.6e-16 Score=140.26 Aligned_cols=144 Identities=12% Similarity=0.104 Sum_probs=101.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+..+... .+....+.+++||++|++.++..|..||++++++|+|+|+++.
T Consensus 22 ~~f~~~~~~t~~~~~~~~~--------~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~---------- 83 (190)
T cd04144 22 NHFVETYDPTIEDSYRKQV--------VVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR---------- 83 (190)
T ss_pred CCCCccCCCchHhhEEEEE--------EECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH----------
Confidence 5666778888765432211 1111335689999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 219 NRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
+++.....++..+.+.. ...+.|++|++||+|+..++. +. .+.+.++.. .
T Consensus 84 ~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~------v~------------~~~~~~~~~----------~ 135 (190)
T cd04144 84 STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE------VS------------TEEGAALAR----------R 135 (190)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc------cC------------HHHHHHHHH----------H
Confidence 56666666666665432 135789999999999865321 10 111111111 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
.++.++++||+++.||.++|.++.+.+.++..
T Consensus 136 ~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 136 LGCEFIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred hCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 23568999999999999999999998876544
No 56
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=4.3e-17 Score=143.42 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=103.1
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||.|.....+.+++.++.+||++|+...++.|.+|+.+++++|||+|+++. .++.++..++..+++....
T Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~----------~~~~~~~~~l~~l~~~~~~ 116 (184)
T smart00178 47 PTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDK----------ERFAESKRELDALLSDEEL 116 (184)
T ss_pred CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcH----------HHHHHHHHHHHHHHcChhh
Confidence 345555556677889999999999999999999999999999999999997 7788888888888876666
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+..+ + ....+.+.+--.... ........+.+.++.|||+.++|+.++++
T Consensus 117 ~~~piliv~NK~Dl~~~-~--~~~~i~~~l~l~~~~---------------~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~ 178 (184)
T smart00178 117 ATVPFLILGNKIDAPYA-A--SEDELRYALGLTNTT---------------GSKGKVGVRPLEVFMCSVVRRMGYGEGFK 178 (184)
T ss_pred cCCCEEEEEeCccccCC-C--CHHHHHHHcCCCccc---------------ccccccCCceeEEEEeecccCCChHHHHH
Confidence 78999999999998643 3 333444432100000 00000112567899999999999999999
Q ss_pred HHHHH
Q psy3651 318 AVKNT 322 (334)
Q Consensus 318 ~v~~~ 322 (334)
|+.+.
T Consensus 179 wl~~~ 183 (184)
T smart00178 179 WLSQY 183 (184)
T ss_pred HHHhh
Confidence 99764
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=5.7e-17 Score=138.62 Aligned_cols=138 Identities=15% Similarity=0.163 Sum_probs=99.0
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+..... ..+......+++||++|+++++.+|..|+++++++|+|+|+++.
T Consensus 24 ~~~~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~---------- 85 (163)
T cd04176 24 GTFIEKYDPTIEDFYRKE--------IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQ---------- 85 (163)
T ss_pred CCCCCCCCCchhheEEEE--------EEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCH----------
Confidence 566677888765432211 11111235688999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++.+...|+..+.+.....+.|++|++||+|+..++. .. .+.+..+. . ...
T Consensus 86 ~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----~~--------------~~~~~~~~--------~--~~~ 137 (163)
T cd04176 86 QTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE----VS--------------SAEGRALA--------E--EWG 137 (163)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc----cC--------------HHHHHHHH--------H--HhC
Confidence 67778878878777655456889999999999854321 00 01111111 0 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+.+++|||+++.||.++|.++.+.
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 138 CPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHh
Confidence 568899999999999999998764
No 58
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.70 E-value=1.7e-16 Score=144.25 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=104.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.++|.||..+.... . ..+.-..+.+.+||++||+.+++.|..+|.+++++|+|+|+++.
T Consensus 24 ~~f~~~y~pTi~~~~~~---~-----~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~---------- 85 (222)
T cd04173 24 DAYPGSYVPTVFENYTA---S-----FEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRP---------- 85 (222)
T ss_pred CCCCCccCCccccceEE---E-----EEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCH----------
Confidence 66778899987654211 1 11122347789999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.+++.....|...+.. ...++|++||+||+||....- ....+.+. .-.+-..+.+..+.++ ...
T Consensus 86 ~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~--~~~~~~~~----~~~pIs~e~g~~~ak~---------~~~ 149 (222)
T cd04173 86 ETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLA--TLRELSKQ----RLIPVTHEQGTVLAKQ---------VGA 149 (222)
T ss_pred HHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchh--hhhhhhhc----cCCccCHHHHHHHHHH---------cCC
Confidence 7788887666655443 346799999999999865311 11111110 0111223333322211 122
Q ss_pred eEEEEEeeecCch-HHHHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTEN-IKIVFNAVKNTILHR 326 (334)
Q Consensus 299 i~~~~tsA~d~~n-I~~vf~~v~~~I~~~ 326 (334)
+.+++|||+++.+ |+++|..+....+.+
T Consensus 150 ~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred CEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 4789999999885 999999999987764
No 59
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.70 E-value=1.2e-16 Score=140.53 Aligned_cols=141 Identities=24% Similarity=0.385 Sum_probs=103.4
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||.|.....+.+.+..+.+||++|+..+++.|.+|+.+++++|+|+|+++. .++.++..++.++++....
T Consensus 49 ~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~----------~s~~~~~~~~~~i~~~~~~ 118 (190)
T cd00879 49 PTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADP----------ERFQESKEELDSLLSDEEL 118 (190)
T ss_pred CccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHcCccc
Confidence 455556667777889999999999999999999999999999999999987 7788888999999876666
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+... + ....+.+++-.+.-... +..++.....+.+.++.|||++++||.++|+
T Consensus 119 ~~~pvivv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 119 ANVPFLILGNKIDLPGA-V--SEEELRQALGLYGTTTG-----------KGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred cCCCEEEEEeCCCCCCC-c--CHHHHHHHhCccccccc-----------ccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 78999999999998642 3 33333333211100000 0000111112456789999999999999999
Q ss_pred HHHHH
Q psy3651 318 AVKNT 322 (334)
Q Consensus 318 ~v~~~ 322 (334)
|+...
T Consensus 185 ~l~~~ 189 (190)
T cd00879 185 WLSQY 189 (190)
T ss_pred HHHhh
Confidence 99764
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.70 E-value=9.9e-17 Score=135.97 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=98.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|...|.||..+... ..+.+ ....+.+||++|++.++..|..|+++++++++|+|+++.
T Consensus 24 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~-------- 85 (162)
T cd04138 24 NHFVDEYDPTIEDSYR----------KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR-------- 85 (162)
T ss_pred CCCcCCcCCcchheEE----------EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH--------
Confidence 4566778888765421 11222 235688999999999999999999999999999999987
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
..+.+...++..+.......+.|++|++||+|+....+ ... .+..+.. .
T Consensus 86 --~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~--~~~-----------------~~~~~~~----------~ 134 (162)
T cd04138 86 --KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV--SSR-----------------QGQDLAK----------S 134 (162)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee--cHH-----------------HHHHHHH----------H
Confidence 56667667777777654456789999999999865322 111 1111110 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+.+++|||+++.||.++|+++.+.+
T Consensus 135 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 135 YGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 235688999999999999999998654
No 61
>KOG0080|consensus
Probab=99.69 E-value=1.5e-16 Score=134.28 Aligned_cols=146 Identities=17% Similarity=0.183 Sum_probs=106.7
Q ss_pred hHHHHHhhhCCCCCCCCCCCcccccceeeeecceeE--EEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEe
Q psy3651 129 NWDRISRRVNSPLFQDYIPSNKDILHARKATKGITE--FTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS 204 (334)
Q Consensus 129 ~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~--~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~d 204 (334)
-+-|+.. ..|.|.. ..|+|++. ..+.++ ..++.||||+||+++|.+.++||+++.+||.|+|
T Consensus 27 LllrFv~-------~~fd~~~-------~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYD 92 (209)
T KOG0080|consen 27 LLLRFVS-------NTFDDLH-------PTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYD 92 (209)
T ss_pred HHHHHHh-------cccCccC-------CceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEE
Confidence 3556777 6666632 34688874 344444 4789999999999999999999999999999999
Q ss_pred CCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651 205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL 284 (334)
Q Consensus 205 ls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi 284 (334)
++..|.. -.++.+++..+..+.+ .++-.+||+||+|...++. .+-++..+|.
T Consensus 93 VT~Rdtf-------~kLd~W~~Eld~Ystn---~diikmlVgNKiDkes~R~------------------V~reEG~kfA 144 (209)
T KOG0080|consen 93 VTSRDTF-------VKLDIWLKELDLYSTN---PDIIKMLVGNKIDKESERV------------------VDREEGLKFA 144 (209)
T ss_pred ccchhhH-------HhHHHHHHHHHhhcCC---ccHhHhhhcccccchhccc------------------ccHHHHHHHH
Confidence 9998544 3455555555555544 5678899999999765443 1112222222
Q ss_pred HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+++++-++++||++.+||+.+|+.+...|++.
T Consensus 145 ----------r~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 145 ----------RKHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred ----------HhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 23567899999999999999999999988863
No 62
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.69 E-value=1.7e-16 Score=139.74 Aligned_cols=142 Identities=21% Similarity=0.274 Sum_probs=98.3
Q ss_pred CCCCCCCCCCcccccceeeeecceeE--EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITE--FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE 214 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~--~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~e 214 (334)
+.|.++|.||. |.+. ..+.+++ +.+++||++||+.++..|..++++++++|+|+|+++.
T Consensus 23 ~~f~~~~~~T~-----------g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~------ 85 (182)
T cd04128 23 GEFDEDYIQTL-----------GVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK------ 85 (182)
T ss_pred CCCCCCCCCcc-----------ceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH------
Confidence 55666777765 3322 2333333 7789999999999999999999999999999999997
Q ss_pred ccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD 294 (334)
Q Consensus 215 d~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~ 294 (334)
.++.+...|++.+.... ....| +|++||+||..+ + ....-.. ..+.+.+| ..
T Consensus 86 ----~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~-~--~~~~~~~----------~~~~~~~~--------a~- 137 (182)
T cd04128 86 ----STLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFAD-L--PPEEQEE----------ITKQARKY--------AK- 137 (182)
T ss_pred ----HHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhcccc-c--cchhhhh----------hHHHHHHH--------HH-
Confidence 67777777888776542 23456 688999998642 1 0000000 00111111 11
Q ss_pred CCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 295 EKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 295 ~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
..++.+++|||+++.||+++|+++.+.+++.
T Consensus 138 -~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 138 -AMKAPLIFCSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred -HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 1236689999999999999999999988763
No 63
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=4.6e-16 Score=137.37 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=101.8
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+... . ...+....+.+++||++||+.++..|..+|.+++++|+|+|+++.
T Consensus 23 ~~~~~~~~~t~~~~~~---~-----~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~---------- 84 (189)
T cd04134 23 GYFPQVYEPTVFENYV---H-----DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP---------- 84 (189)
T ss_pred CCCCCccCCcceeeeE---E-----EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCH----------
Confidence 5566678887644321 0 111122347889999999999999999999999999999999997
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
+++.... .|+..+... ..+.|++|++||+||..++- ....+.. ........+.+.++.. . .+
T Consensus 85 ~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~--------~-~~ 147 (189)
T cd04134 85 DSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARN--ERDDLQR----YGKHTISYEEGLAVAK--------R-IN 147 (189)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChh--hHHHHhh----ccCCCCCHHHHHHHHH--------H-cC
Confidence 6666554 355555543 35789999999999976532 1111111 0011112222222211 1 13
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
.+.+++|||+++.||+++|.++.+.++...
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 367899999999999999999999888543
No 64
>KOG0074|consensus
Probab=99.69 E-value=2.9e-17 Score=135.88 Aligned_cols=131 Identities=19% Similarity=0.301 Sum_probs=108.3
Q ss_pred eeeecceeEEEEEeeC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 156 RKATKGITEFTIVISN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
-.||-|++...+...+ +++.+||+|||++-|..|..||+++|++|||+|.+|. .+++|.-+.+-++...
T Consensus 45 ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~----------krfeE~~~el~ELlee 114 (185)
T KOG0074|consen 45 LTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDE----------KRFEEISEELVELLEE 114 (185)
T ss_pred ccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCch----------HhHHHHHHHHHHHhhh
Confidence 3689999999999977 9999999999999999999999999999999998887 7888888888888888
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
...+..|+.++.||+|+..+. +.+.+.. + +++.-...|.+++..+||..++++..
T Consensus 115 eKl~~vpvlIfankQdlltaa---~~eeia~---------------------k-lnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 115 EKLAEVPVLIFANKQDLLTAA---KVEEIAL---------------------K-LNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred hhhhccceeehhhhhHHHhhc---chHHHHH---------------------h-cchhhhhhceEEeeeCccccccCccC
Confidence 888899999999999987652 2222211 1 22332334778899999999999999
Q ss_pred HHHHHHH
Q psy3651 315 VFNAVKN 321 (334)
Q Consensus 315 vf~~v~~ 321 (334)
-.+||..
T Consensus 170 g~~wv~s 176 (185)
T KOG0074|consen 170 GSDWVQS 176 (185)
T ss_pred cchhhhc
Confidence 9888865
No 65
>PTZ00369 Ras-like protein; Provisional
Probab=99.69 E-value=5.7e-16 Score=136.69 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=101.8
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..+.... + ..+....+.+++||++|++.++..|..|+++++++|+|+|+++.
T Consensus 28 ~~~~~~~~~t~~~~~~~---~-----~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~---------- 89 (189)
T PTZ00369 28 NHFIDEYDPTIEDSYRK---Q-----CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSR---------- 89 (189)
T ss_pred CCCCcCcCCchhhEEEE---E-----EEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCH----------
Confidence 45556777876543211 1 11222346788999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++.+...|++.+.+.....++|++|++||+|+..++. +. .+.+..+.. ...
T Consensus 90 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~------i~------------~~~~~~~~~----------~~~ 141 (189)
T PTZ00369 90 SSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQ------VS------------TGEGQELAK----------SFG 141 (189)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc------cC------------HHHHHHHHH----------HhC
Confidence 66777777777776654446889999999999854321 10 111111111 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+.+++|||+++.||.++|.++.+.+.+.
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 5689999999999999999999888754
No 66
>KOG0095|consensus
Probab=99.68 E-value=8.3e-17 Score=134.27 Aligned_cols=131 Identities=22% Similarity=0.244 Sum_probs=101.4
Q ss_pred eeecceeE--EEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 157 KATKGITE--FTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 157 ~~T~Gi~~--~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
..|+|++. .+++++ .++++|||++||+++|+...+||+.++++|+|+|+|-. ++...+.|++...++..
T Consensus 37 gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscq-------psfdclpewlreie~ya 109 (213)
T KOG0095|consen 37 GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ-------PSFDCLPEWLREIEQYA 109 (213)
T ss_pred CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccC-------cchhhhHHHHHHHHHHh
Confidence 56888874 345554 48999999999999999999999999999999999975 44477888888888877
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
|++ +--|||+||.|+-.++- -...+.+ .|.. ...+|+.+|||++..||
T Consensus 110 n~k----vlkilvgnk~d~~drre--vp~qige---------------------efs~-----~qdmyfletsakea~nv 157 (213)
T KOG0095|consen 110 NNK----VLKILVGNKIDLADRRE--VPQQIGE---------------------EFSE-----AQDMYFLETSAKEADNV 157 (213)
T ss_pred hcc----eEEEeeccccchhhhhh--hhHHHHH---------------------HHHH-----hhhhhhhhhcccchhhH
Confidence 754 45699999999877642 2222222 1111 14578999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILHR 326 (334)
Q Consensus 313 ~~vf~~v~~~I~~~ 326 (334)
+.+|..+.-.++..
T Consensus 158 e~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 158 EKLFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877654
No 67
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=5.9e-16 Score=133.81 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=89.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+.+.+.+||++||+.+...|.++|.+++++|+|+|+++. .++.....|+..+.+.. .++|++|++||+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~~piiiv~nK~ 114 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSR----------VTYKNVPNWHRDLVRVC--GNIPIVLCGNKV 114 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC--CCCcEEEEEEch
Confidence 457899999999999999999999999999999999987 67777767777776543 389999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+..+.+ .. .+. .+. ..+.+.+++|||+++.||+++|+++.+.+++
T Consensus 115 Dl~~~~~--~~------------------~~~-----~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 115 DIKDRKV--KA------------------KQI-----TFH-----RKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred hcccccC--CH------------------HHH-----HHH-----HHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 9864322 10 000 111 1245778999999999999999999998875
No 68
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.67 E-value=8.5e-16 Score=132.13 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=88.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.++..|..+++++++++||+|+++. .++.+...|++.+... ...+.|++|++||+|
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D 117 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKTY-SWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCCEEEEEECcc
Confidence 47799999999999999999999999999999999986 6777777777776543 235789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++. . ..+.+.++.. ..++.+++|||+++.||.++|+++.+.+..
T Consensus 118 l~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 118 MEDERV--V----------------SSERGRQLAD----------QLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred cCcccc--c----------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 965432 0 1111111111 123568999999999999999999887653
No 69
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.67 E-value=4.4e-16 Score=132.57 Aligned_cols=130 Identities=25% Similarity=0.422 Sum_probs=98.1
Q ss_pred eeecceeEEEEEe-eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 157 KATKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 157 ~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
.||+|+....+.. ++..+.+||++|++.++..|..++.+++++|||+|+++. .++.+...++.++.+.+
T Consensus 28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~----------~~~~~~~~~~~~~~~~~ 97 (160)
T cd04156 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE----------ARLDESQKELKHILKNE 97 (160)
T ss_pred cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHhch
Confidence 3566655544544 357899999999999999999999999999999999997 67888888999988876
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~~ 314 (334)
...+.|++|++||+|+... . ....+...+ .+.. ...+.+++++|||++++||.+
T Consensus 98 ~~~~~piilv~nK~Dl~~~-~--~~~~i~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 98 HIKGVPVVLLANKQDLPGA-L--TAEEITRRF----------------------KLKKYCSDRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred hhcCCCEEEEEECcccccC-c--CHHHHHHHc----------------------CCcccCCCCcEEEEecccccCCChHH
Confidence 6678999999999998542 1 111222110 1100 112456788999999999999
Q ss_pred HHHHHHH
Q psy3651 315 VFNAVKN 321 (334)
Q Consensus 315 vf~~v~~ 321 (334)
+|+++..
T Consensus 153 ~~~~i~~ 159 (160)
T cd04156 153 AFRKLAS 159 (160)
T ss_pred HHHHHhc
Confidence 9998864
No 70
>KOG0086|consensus
Probab=99.67 E-value=1.1e-16 Score=134.01 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=96.8
Q ss_pred eeecceeEE--EEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 157 KATKGITEF--TIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 157 ~~T~Gi~~~--~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
.-|+|+... -+.+ +.++++||||+||+++|+....||+++.+.++|+|+++. .++.+--.|+..+-
T Consensus 39 sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr----------dsfnaLtnWL~DaR 108 (214)
T KOG0086|consen 39 SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------DSFNALTNWLTDAR 108 (214)
T ss_pred cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccch----------hhHHHHHHHHHHHH
Confidence 457777643 2233 458999999999999999999999999999999999998 34444444444432
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. -..+++.++|++||.||-.++- +.+ .+|..| .+.+.+-+++|||.+|+||
T Consensus 109 ~-lAs~nIvviL~GnKkDL~~~R~----Vtf--------------lEAs~F----------aqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 109 T-LASPNIVVILCGNKKDLDPERE----VTF--------------LEASRF----------AQENELMFLETSALTGENV 159 (214)
T ss_pred h-hCCCcEEEEEeCChhhcChhhh----hhH--------------HHHHhh----------hcccceeeeeecccccccH
Confidence 2 2346788999999999977642 111 122111 2235678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILHR 326 (334)
Q Consensus 313 ~~vf~~v~~~I~~~ 326 (334)
++.|-.+..+|+.+
T Consensus 160 EEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 160 EEAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999865
No 71
>KOG0091|consensus
Probab=99.67 E-value=1.7e-16 Score=134.27 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=103.3
Q ss_pred eeecceeEE--EEEee---CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 157 KATKGITEF--TIVIS---NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 157 ~~T~Gi~~~--~~~~~---~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
-||+|++.. -++++ .+++++|||+||+++|+...+||+|.-+++.|+|+++. .+++....|.++.
T Consensus 38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr----------~sfehv~~w~~ea 107 (213)
T KOG0091|consen 38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR----------ESFEHVENWVKEA 107 (213)
T ss_pred CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch----------hhHHHHHHHHHHH
Confidence 578888732 23332 38999999999999999999999999999999999998 7777777777776
Q ss_pred HhhcC-CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 232 INNVI-FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 232 ~~~~~-~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
.-+-. ..++-+.||+.|+||-.++- .+.++|.+|- ...++.+.+|||+++.
T Consensus 108 ~m~~q~P~k~VFlLVGhKsDL~SqRq------------------Vt~EEaEklA----------a~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 108 AMATQGPDKVVFLLVGHKSDLQSQRQ------------------VTAEEAEKLA----------ASHGMAFVETSAKNGC 159 (213)
T ss_pred HHhcCCCCeeEEEEeccccchhhhcc------------------ccHHHHHHHH----------HhcCceEEEecccCCC
Confidence 44322 34567889999999977642 2334443221 2367889999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy3651 311 NIKIVFNAVKNTILHRN 327 (334)
Q Consensus 311 nI~~vf~~v~~~I~~~~ 327 (334)
||++.|..+.+.|...-
T Consensus 160 NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIFQAI 176 (213)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 72
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.66 E-value=1.4e-15 Score=130.54 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=89.6
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+++ +.+++||++|++.++..|..|+.+++++++|+|+++. +++.+...|++.+.+. ...+.|++
T Consensus 41 ~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~sf~~~~~~~~~~~~~-~~~~~~ii 109 (161)
T cd04117 41 TIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE----------RSYQHIMKWVSDVDEY-APEGVQKI 109 (161)
T ss_pred EEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCeEE
Confidence 344443 6789999999999999999999999999999999997 7788888888777654 23578999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+++||.|+.+++- . ..+.+..+.+ ...+.+++|||+++.||+++|.++.+.
T Consensus 110 lvgnK~Dl~~~~~---v---------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 110 LIGNKADEEQKRQ---V---------------GDEQGNKLAK----------EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEECcccccccC---C---------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999865431 1 0112221211 122567999999999999999999764
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=1.6e-15 Score=129.55 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=101.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..|..... ..+..+.+.+.+||++||+.++..|..++.+++++|+|+|+++.
T Consensus 23 ~~~~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---------- 84 (164)
T smart00173 23 GHFVDDYDPTIEDSYRKQ--------IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR---------- 84 (164)
T ss_pred CcCCcccCCchhhhEEEE--------EEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCH----------
Confidence 455677888876543211 11222346788999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
..+.+...++..+.+.....+.|+++++||+|+..++. . ..+.+..+.. ...
T Consensus 85 ~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~--~----------------~~~~~~~~~~----------~~~ 136 (164)
T smart00173 85 QSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV--V----------------STEEGKELAR----------QWG 136 (164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce--E----------------cHHHHHHHHH----------HcC
Confidence 67777777777776655455789999999999865421 0 1111211221 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+.++++||+++.||.++|+++.+.+.
T Consensus 137 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999988664
No 74
>KOG0081|consensus
Probab=99.66 E-value=3.3e-16 Score=131.93 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=107.1
Q ss_pred eeeccee--EEEEEee-----------CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHH
Q psy3651 157 KATKGIT--EFTIVIS-----------NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223 (334)
Q Consensus 157 ~~T~Gi~--~~~~~~~-----------~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~e 223 (334)
+.|+||+ +..+.++ .+.+++|||+||+++|++...+|+++-+.+.++|+++. .++-+
T Consensus 39 IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e----------qSFLn 108 (219)
T KOG0081|consen 39 ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE----------QSFLN 108 (219)
T ss_pred EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch----------HHHHH
Confidence 5577877 3344432 26899999999999999999999999999999999997 88899
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE
Q psy3651 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF 303 (334)
Q Consensus 224 sl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~ 303 (334)
..+|+.++-.+.+..+.-|+|++||+||..++. .. .+.| .++. .+..+++++
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~--Vs----------------~~qa--------~~La--~kyglPYfE 160 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV--VS----------------EDQA--------AALA--DKYGLPYFE 160 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhh--hh----------------HHHH--------HHHH--HHhCCCeee
Confidence 999999998888888889999999999988765 11 1111 1111 124688999
Q ss_pred EeeecCchHHHHHHHHHHHHHHH
Q psy3651 304 TTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 304 tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|||-++.||++..+-+.+.|+++
T Consensus 161 TSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999988875
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=1e-15 Score=141.38 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=102.9
Q ss_pred CCCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcc
Q psy3651 138 NSPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215 (334)
Q Consensus 138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed 215 (334)
.+.|.+.|.||..|... ..+.++ .+.++|||++|++.++.+|..++.+++++|+|+|+++.
T Consensus 22 ~~~f~~~y~pTi~d~~~----------k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~------- 84 (247)
T cd04143 22 GGRFEEQYTPTIEDFHR----------KLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR------- 84 (247)
T ss_pred cCCCCCCCCCChhHhEE----------EEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH-------
Confidence 36677789998876422 122233 36788999999999999999999999999999999997
Q ss_pred cccccHHHHHHHHHHHHhhcC--------CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHH
Q psy3651 216 RRTNRLHESRNIFDTIINNVI--------FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNY 287 (334)
Q Consensus 216 ~~~nrl~esl~lf~~i~~~~~--------~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~ 287 (334)
.++++...|++++....+ ..+.|+||++||+|+..++- .. .+++.+++.
T Consensus 85 ---~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----v~--------------~~ei~~~~~-- 141 (247)
T cd04143 85 ---ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----VQ--------------RDEVEQLVG-- 141 (247)
T ss_pred ---HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----cC--------------HHHHHHHHH--
Confidence 788888888888876533 35789999999999865321 00 111111111
Q ss_pred HHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 288 FKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 288 F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
. ...+.+++|||+++.||+++|+++....
T Consensus 142 ------~-~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 142 ------G-DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ------h-cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 0 1346789999999999999999998754
No 76
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=1.9e-15 Score=130.23 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=88.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.+...|..++++++++|+|+|+++. .++.+...|+..+.... ..+.|++|++||.|
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D 119 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------KSFENIRNWMRNIEEHA-SEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence 36789999999999999999999999999999999986 56666667777665532 35789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+.+++- .. .+.+..+.. ...+.++++||+.+.||.++|.++.+.+++
T Consensus 120 l~~~~~----~~--------------~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 120 MEEKRV----VS--------------KEEGEALAD----------EYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred cccccC----CC--------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 975421 11 111111111 123568999999999999999999998875
No 77
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.66 E-value=1.6e-15 Score=131.01 Aligned_cols=152 Identities=15% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..+.... ++. +....+.+++||++||+.++..|..++++++++|+|+|+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~---------- 82 (174)
T smart00174 21 NAFPEDYVPTVFENYSA---DVE-----VDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP---------- 82 (174)
T ss_pred CCCCCCCCCcEEeeeeE---EEE-----ECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCH----------
Confidence 55667788876543211 111 112335689999999999999999999999999999999986
Q ss_pred ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++++... |+..+... ..++|++|++||+|+..+.- ...++.. ....+-+.+.+..+.+.. .
T Consensus 83 ~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------~ 145 (174)
T smart00174 83 ASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKS--TLRELSK----QKQEPVTYEQGEALAKRI---------G 145 (174)
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChh--hhhhhhc----ccCCCccHHHHHHHHHHc---------C
Confidence 66766654 55555443 35799999999999976422 1111211 111222333333222211 2
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
...++++||+++.||.++|+.+.+.+++
T Consensus 146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 146 AVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 2368899999999999999999987753
No 78
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=5.2e-16 Score=138.30 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=83.1
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN-IFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK 248 (334)
..+++++|||+||+. +....||++++++|+|+|+++. .++++... |...+... ..++|++|++||
T Consensus 64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~----------~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 129 (195)
T cd01873 64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASP----------NSLRNVKTMWYPEIRHF--CPRVPVILVGCK 129 (195)
T ss_pred EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCCh----------hHHHHHHHHHHHHHHHh--CCCCCEEEEEEc
Confidence 357899999999974 3455689999999999999997 67777664 54554332 257899999999
Q ss_pred CCcchhhhcc---ccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 249 TDLLAEKLRT---SKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 249 ~Dl~~eki~~---~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+||....... ...++..- --....-..+++.++.++ .++.+++|||+++.||+++|+.+.+.
T Consensus 130 ~DL~~~~~~~~~~~~~~~~~~--~~~~~~V~~~e~~~~a~~----------~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 130 LDLRYADLDEVNRARRPLARP--IKNADILPPETGRAVAKE----------LGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred hhccccccchhhhcccccccc--cccCCccCHHHHHHHHHH----------hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9985421100 00000000 000112234444433322 34678999999999999999988753
No 79
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.66 E-value=1.4e-15 Score=129.63 Aligned_cols=139 Identities=20% Similarity=0.168 Sum_probs=99.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..+...... .+....+.+++||++|++.++..|..++++++++|+|+|+++.
T Consensus 25 ~~~~~~~~~t~~~~~~~~~--------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~---------- 86 (164)
T cd04145 25 SYFVTDYDPTIEDSYTKQC--------EIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDR---------- 86 (164)
T ss_pred CCCCcccCCCccceEEEEE--------EECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------
Confidence 3455778887654321111 1222346788999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++.+...|+..+.+.....+.|++|++||+|+..++. + ..+.+.++.. ..+
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~------~------------~~~~~~~~~~----------~~~ 138 (164)
T cd04145 87 GSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK------V------------SREEGQELAR----------KLK 138 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce------e------------cHHHHHHHHH----------HcC
Confidence 67777777888877654446789999999999865421 0 1111111111 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+.++++||+++.||+++|+++.+.+
T Consensus 139 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 139 IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999987654
No 80
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=7.3e-16 Score=131.39 Aligned_cols=117 Identities=13% Similarity=0.197 Sum_probs=87.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC----CCCCcEEEE
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI----FRNVSFILF 245 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~----~~~~piiL~ 245 (334)
..+.+++||++|++.++..|..++++++++|+|+|+++. +++.+...|+..+..... ..+.|++++
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR----------QSFEALDSWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence 347889999999999999999999999999999999997 566666666666654321 256899999
Q ss_pred EeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 246 LNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 246 lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+||+|+..++. . +.+.+..+.. ..++.+++|||+++.||.++|+++.+.++
T Consensus 117 ~nK~Dl~~~~~---~---------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 117 ANKIDLTKHRA---V---------------SEDEGRLWAE----------SKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EEchhcccccc---c---------------CHHHHHHHHH----------HcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999864321 0 1111111111 12366899999999999999999998876
No 81
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=8.8e-16 Score=138.43 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=89.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL~lNK 248 (334)
.+.+.+||++||+.++..|..|+++++++|+|+|+++. +++.....|+..+.+... ..+.|++|++||
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~----------~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNS----------QSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 46889999999999999999999999999999999997 667666666666654321 245789999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
.|+..++. . ..+.+..+.. ..++.++++||++|+||.++|+++.+.+....
T Consensus 119 ~DL~~~~~---v---------------~~~~~~~~~~----------~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~~ 169 (215)
T cd04109 119 TDLEHNRT---V---------------KDDKHARFAQ----------ANGMESCLVSAKTGDRVNLLFQQLAAELLGVD 169 (215)
T ss_pred cccccccc---c---------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99965321 0 0111111111 12356889999999999999999999888653
No 82
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.65 E-value=2e-15 Score=129.88 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=86.3
Q ss_pred EEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651 167 IVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL 244 (334)
Q Consensus 167 ~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL 244 (334)
+.+++ +.+.+||++||+. ..|+++++++|+|+|+++. .+++++..|++.+.+.....++|++|
T Consensus 40 i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~----------~sf~~~~~~~~~i~~~~~~~~~piil 104 (158)
T cd04103 40 VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENE----------ASFQTVYNLYHQLSSYRNISEIPLIL 104 (158)
T ss_pred EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 44444 6789999999974 3578899999999999998 88999889999988776567899999
Q ss_pred EEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 245 FLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 245 ~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
++||.|+.... ..++. .+.+.++.++ .+.+.+++|||+++.||+++|..+.+.
T Consensus 105 vgnK~Dl~~~~----~~~v~------------~~~~~~~~~~---------~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 105 VGTQDAISESN----PRVID------------DARARQLCAD---------MKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EeeHHHhhhcC----CcccC------------HHHHHHHHHH---------hCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 99999985321 11111 1222222211 134778999999999999999988753
No 83
>KOG0394|consensus
Probab=99.65 E-value=7.5e-16 Score=132.84 Aligned_cols=123 Identities=14% Similarity=0.164 Sum_probs=90.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh---cCCCCCcEEEEE
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN---VIFRNVSFILFL 246 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~---~~~~~~piiL~l 246 (334)
+.+.++||||+||++++++-..+|+++|+++.|+|+.+. .+++.--.|-++.+.. .....-|+||+|
T Consensus 56 ~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~----------~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG 125 (210)
T KOG0394|consen 56 RSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP----------KSFENLENWRKEFLIQASPQDPETFPFVILG 125 (210)
T ss_pred eEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh----------hhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence 448899999999999999999999999999999999997 3333322333333332 223557999999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
||+|+...+- ..+ +.+.|+.+-.. ++++++|+|||++..||...|..+....+..
T Consensus 126 NKiD~~~~~~--r~V--------------S~~~Aq~WC~s---------~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 126 NKIDVDGGKS--RQV--------------SEKKAQTWCKS---------KGNIPYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred ccccCCCCcc--cee--------------eHHHHHHHHHh---------cCCceeEEecccccccHHHHHHHHHHHHHhc
Confidence 9999976421 111 22334434433 2679999999999999999999999988865
Q ss_pred h
Q psy3651 327 N 327 (334)
Q Consensus 327 ~ 327 (334)
.
T Consensus 181 E 181 (210)
T KOG0394|consen 181 E 181 (210)
T ss_pred c
Confidence 4
No 84
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.65 E-value=2.7e-15 Score=133.62 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=90.9
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+.+||++||+.++..|..|+++++++|+|+|+++. .++.+...|+..+.+. ....|++|++||+|+
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~----------~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl 122 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG----------ESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECccc
Confidence 6789999999999999999999999999999999997 6777787888877654 357899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
...+. . +.+.+..+.. ..++.+++|||+++.||.++|+++.+.+++..
T Consensus 123 ~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 123 PERKV----V--------------ETEDAYKFAG----------QMGISLFETSAKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred ccccc----c--------------CHHHHHHHHH----------HcCCEEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 65321 0 0111111111 12367899999999999999999999988653
No 85
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.64 E-value=1.6e-15 Score=131.76 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=98.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||...-.. ...+.+. .+.+++||++||+.++..|..+|++++++|+|+|+++.
T Consensus 23 ~~f~~~~~~t~~~~~~---------~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~-------- 85 (170)
T cd04108 23 DVFDKNYKATIGVDFE---------MERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV-------- 85 (170)
T ss_pred CCCCCCCCCceeeEEE---------EEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH--------
Confidence 5566778887642211 1223332 36789999999999999999999999999999999986
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
..+.....|+..+.+.....+.|++||+||.|+..+. ..... .+.+..+.. .
T Consensus 86 --~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~~------------~~~~~~~~~----------~ 137 (170)
T cd04108 86 --ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYALM------------EQDAIKLAA----------E 137 (170)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----ccccc------------HHHHHHHHH----------H
Confidence 5666777777777665444567899999999984431 10110 111111111 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
.+..+++|||+++.||.++|+.+...+.
T Consensus 138 ~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 138 MQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2346789999999999999999988764
No 86
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=5.1e-15 Score=133.32 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=92.4
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+++||++||+.++..|..|+++++++|+|+|+++. +++.+...|+..+.........|++|++||.|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNR----------ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 6789999999999999999999999999999999997 778888888888876544456789999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
...+. . ..+.+..+.+ ..++.+++|||+++.||.++|+++.+.+.++
T Consensus 122 ~~~~~--v----------------~~~~~~~~~~----------~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 122 ESQRQ--V----------------TREEAEKLAK----------DLGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ccccc--c----------------CHHHHHHHHH----------HhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 65321 0 1111211111 1337789999999999999999999988765
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.64 E-value=3.8e-15 Score=128.43 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=100.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+... +++ .+...++.+++||++|++.++..|..++++++++|+|+|+++.
T Consensus 24 ~~~~~~~~~t~~~~~~---~~~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~---------- 85 (168)
T cd04177 24 NVFIESYDPTIEDSYR---KQV-----EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE---------- 85 (168)
T ss_pred CCCCcccCCcchheEE---EEE-----EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH----------
Confidence 5566777776543321 111 1112346889999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
..++....+++.+.......++|+++++||.|+...+. . ..+.+.++ .+. .+.
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~--~----------------~~~~~~~~-~~~--------~~~ 138 (168)
T cd04177 86 ASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ--V----------------SREDGVSL-SQQ--------WGN 138 (168)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCc--c----------------CHHHHHHH-HHH--------cCC
Confidence 67777777777776644456799999999999865431 0 01111111 111 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+.+++|||+.+.||.++|+++.+.++-
T Consensus 139 ~~~~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 139 VPFYETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 668899999999999999999987653
No 88
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=1.3e-15 Score=131.05 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=95.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..+..+. ......+...+.+||++||+.++..|..++.+++++|+|+|+++.
T Consensus 24 ~~f~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~---------- 85 (165)
T cd04140 24 GTFRESYIPTIEDTYRQ--------VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK---------- 85 (165)
T ss_pred CCCCCCcCCcchheEEE--------EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH----------
Confidence 55667788876543211 112222457789999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 219 NRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+...+++.+.+.. ...+.|++|++||+|+...+- +. .+.+..+.. .
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------v~------------~~~~~~~~~----------~ 137 (165)
T cd04140 86 QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE------VS------------SNEGAACAT----------E 137 (165)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe------ec------------HHHHHHHHH----------H
Confidence 56666666665554322 235789999999999855211 10 111111111 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
..+.+++|||+++.||+++|+++.+
T Consensus 138 ~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 138 WNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred hCCcEEEeecCCCCCHHHHHHHHHh
Confidence 2356899999999999999999875
No 89
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.63 E-value=1.8e-15 Score=128.66 Aligned_cols=131 Identities=23% Similarity=0.373 Sum_probs=104.0
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..+|+|+....+.+++..+.+||++|++.++..|..++.+++++++|+|+++. .++.++..++..++...
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~ 96 (158)
T cd00878 27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR----------ERIEEAKEELHKLLNEE 96 (158)
T ss_pred CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCc
Confidence 35677888778888889999999999999999999999999999999999997 68999999999998876
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
...+.|+++++||+|+.... ....+.+ . .+......+.+.++++||+++.|+.++
T Consensus 97 ~~~~~piiiv~nK~D~~~~~---~~~~~~~---------------------~-~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 97 ELKGVPLLIFANKQDLPGAL---SVSELIE---------------------K-LGLEKILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred ccCCCcEEEEeeccCCcccc---CHHHHHH---------------------h-hChhhccCCcEEEEEeeCCCCCCHHHH
Confidence 56789999999999986531 1111111 1 111111235678999999999999999
Q ss_pred HHHHHH
Q psy3651 316 FNAVKN 321 (334)
Q Consensus 316 f~~v~~ 321 (334)
|+++.+
T Consensus 152 ~~~l~~ 157 (158)
T cd00878 152 LDWLLQ 157 (158)
T ss_pred HHHHhh
Confidence 998864
No 90
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.63 E-value=2.4e-15 Score=126.33 Aligned_cols=129 Identities=19% Similarity=0.328 Sum_probs=97.6
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|++...+..+++.+.+||++|++.+++.|..++.+++++++|+|+++. ..+.....++..+......
T Consensus 30 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 99 (159)
T cd04159 30 PTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR----------TALEAAKNELHDLLEKPSL 99 (159)
T ss_pred CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHcChhh
Confidence 456666666666778899999999999999999999999999999999987 5667777778887776556
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|+++++||+|+..+. ....+... ..+.....+.+.++.+||+++.||.++|+
T Consensus 100 ~~~p~iiv~nK~D~~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 100 EGIPLLVLGNKNDLPGAL---SVDELIEQ----------------------MNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred cCCCEEEEEeCccccCCc---CHHHHHHH----------------------hCcccccCCceEEEEEEeccCCChHHHHH
Confidence 788999999999986431 11111110 11111223457789999999999999999
Q ss_pred HHHH
Q psy3651 318 AVKN 321 (334)
Q Consensus 318 ~v~~ 321 (334)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9864
No 91
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.63 E-value=4.6e-15 Score=127.27 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=89.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+.... ..+.|+++++||+|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~D 118 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLQEIDRYA-SENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEEEEEEChh
Confidence 36789999999999999999999999999999999997 67777777777765432 35689999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++. .+ .+.+..+.. ...+.++++||+++.||.++|.++.+.+.+
T Consensus 119 l~~~~~----~~--------------~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 119 LTDKRV----VD--------------YSEAQEFAD----------ELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred cccccC----CC--------------HHHHHHHHH----------HcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 865421 11 112221111 124578999999999999999999988753
No 92
>KOG0083|consensus
Probab=99.63 E-value=3.4e-16 Score=128.39 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=103.9
Q ss_pred eeeecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 156 RKATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 156 ~~~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
.+.|+||+.. -++++ .+++++||++||+++|+....||+++++++.++|+++. .+++....|+.+|
T Consensus 27 fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiank----------asfdn~~~wlsei 96 (192)
T KOG0083|consen 27 FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANK----------ASFDNCQAWLSEI 96 (192)
T ss_pred eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccc----------hhHHHHHHHHHHH
Confidence 3567888743 33443 48899999999999999999999999999999999998 7888888888888
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
-... -..+.+.|++||+|+..++. ...+ + . ..+.. ...+++.+|||++|-|
T Consensus 97 ~ey~-k~~v~l~llgnk~d~a~er~--v~~d--d-----------g-----------~kla~--~y~ipfmetsaktg~n 147 (192)
T KOG0083|consen 97 HEYA-KEAVALMLLGNKCDLAHERA--VKRD--D-----------G-----------EKLAE--AYGIPFMETSAKTGFN 147 (192)
T ss_pred HHHH-HhhHhHhhhccccccchhhc--cccc--h-----------H-----------HHHHH--HHCCCceecccccccc
Confidence 6542 24467899999999977654 1111 0 0 11111 2468899999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy3651 312 IKIVFNAVKNTILHRNLR 329 (334)
Q Consensus 312 I~~vf~~v~~~I~~~~l~ 329 (334)
|...|-.+.+.+.+..++
T Consensus 148 vd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKLKMG 165 (192)
T ss_pred HhHHHHHHHHHHHHhccC
Confidence 999999999998876553
No 93
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=1.6e-15 Score=132.87 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=89.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN-IFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+++||++||+.++..|..++++++++|||+|+++. +++++... |+..+... ..+.|++|++||.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 115 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP----------TSLDNVEDKWFPEVNHF--CPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEeCh
Confidence 36789999999999999999999999999999999997 67777654 44444332 3578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
|+..+.- ....+ ..+.+.++... .++ .+++|||+++.||.++|..+.+.++....
T Consensus 116 Dl~~~~~--~~~~v------------~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 116 DLRKDKN--LDRKV------------TPAQAESVAKK----------QGAFAYLECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred hhhhCcc--ccCCc------------CHHHHHHHHHH----------cCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9865421 11011 11222222211 123 68999999999999999999999987643
No 94
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.62 E-value=7.8e-15 Score=126.68 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=98.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+...... .+.-..+.+++||++|+..++..|..++.+++++|+|+|+++.
T Consensus 23 ~~~~~~~~~t~~~~~~~~~--------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~---------- 84 (174)
T cd04135 23 DAFPEEYVPTVFDHYAVSV--------TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP---------- 84 (174)
T ss_pred CCCCCCCCCceeeeeEEEE--------EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCH----------
Confidence 5566778887655432211 1111235678999999999999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++++....|...+... ..+.|++|++||+|+..+.. ....+.. +.....+.+.+..+.++. ..
T Consensus 85 ~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------~~ 148 (174)
T cd04135 85 ASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPK--TLARLND----MKEKPVTVEQGQKLAKEI---------GA 148 (174)
T ss_pred HHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChh--hHHHHhh----ccCCCCCHHHHHHHHHHc---------CC
Confidence 55655543333333322 46789999999999865422 1111211 122223333443332211 22
Q ss_pred eEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+++|||+++.||+++|+.+.+.+
T Consensus 149 ~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 149 HCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CEEEEecCCcCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876
No 95
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.62 E-value=7.5e-15 Score=127.30 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=96.4
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..|..... + .+.-..+.+++||++||+.++..|..++++++++|||+|+++.
T Consensus 23 ~~~~~~~~~t~~~~~~~~---~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~---------- 84 (173)
T cd04130 23 NGYPTEYVPTAFDNFSVV---V-----LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNP---------- 84 (173)
T ss_pred CCCCCCCCCceeeeeeEE---E-----EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCH----------
Confidence 566678888865543221 1 1111236788999999999999999999999999999999997
Q ss_pred ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++.+... |+..+... ..+.|++|++||.|+..+.- .+... ..+.......+.+..+.++. +
T Consensus 85 ~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~-----~~~~~-~~~~~~~v~~~~~~~~a~~~---------~ 147 (173)
T cd04130 85 SSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVN-----VLIQL-ARYGEKPVSQSRAKALAEKI---------G 147 (173)
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChh-----HHHHH-hhcCCCCcCHHHHHHHHHHh---------C
Confidence 66766653 55555432 35689999999999854310 01110 11111222334444333211 2
Q ss_pred CeEEEEEeeecCchHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
...+++|||+++.||+++|+.+.
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 23688999999999999998764
No 96
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=5.5e-15 Score=127.28 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=84.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEE
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFL 246 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~l 246 (334)
+.+.+++||++||+.++..|..++++++++|+|+|+++. .++.....|...+.... ...+.|++|++
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS----------QSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 347789999999999999999999999999999999997 55555555555555432 23568999999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
||.|+....+ . .+++.++..+ .....+++|||+++.||.++|.++.+.
T Consensus 122 nK~Dl~~~~~--~-----------------~~~~~~~~~~---------~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 122 NKNDIPERQV--S-----------------TEEAQAWCRE---------NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECcccccccc--C-----------------HHHHHHHHHH---------CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 9999863322 1 1122222211 122468899999999999999998764
No 97
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.62 E-value=5.4e-15 Score=126.83 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
..+.+++||++||+.++..|..|+++++++|+|+|+++. ..+.+...|+..+.+. ..+.|++|++||+
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~ 114 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK----------ITYKNLSKWYEELREY--RPEIPCIVVANKI 114 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCcEEEEEECc
Confidence 457889999999999999999999999999999999986 4555555666666443 2568999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..+ . . +....+ .. ...+.++.+||+++.|+.++|+.+.+.++++
T Consensus 115 Dl~~~-~--~------------------~~~~~~-----~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 115 DLDPS-V--T------------------QKKFNF-----AE-----KHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred cCchh-H--H------------------HHHHHH-----HH-----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 98432 1 0 001111 10 1235688999999999999999999888764
No 98
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=1.3e-14 Score=127.64 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=89.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.... ..+.|++|++||.|
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~D 116 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ----------ESFENLKFWINEINRYA-RENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEECCC
Confidence 46789999999999999999999999999999999987 56666666666665432 24589999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+.+.+. . +.+.+..+.. ...+.++++||+++.||.++|.++.+.++++
T Consensus 117 l~~~~~--v----------------~~~~~~~~~~----------~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 117 LVNNKV--V----------------DSNIAKSFCD----------SLNIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred Cccccc--C----------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 875432 0 1112211111 1245689999999999999999999988764
No 99
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.61 E-value=1.2e-14 Score=123.93 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=90.7
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
..+.+++||++|++.+...+..++++++++|+|+|+++. +++.....|+..+..... .++|++|++||.
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~----------~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~ 114 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE----------ESFENLKKWLEEIQKYKP-EDIPIIVVGNKS 114 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH----------HHHHTHHHHHHHHHHHST-TTSEEEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc-ccccceeeeccc
Confidence 347799999999999999999999999999999999997 777777777777665543 568999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
|+..++. .+ .+++.++.+ ..++.++++||+++.||.++|..+.+.|+
T Consensus 115 D~~~~~~----v~--------------~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 115 DLSDERE----VS--------------VEEAQEFAK----------ELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TGGGGSS----SC--------------HHHHHHHHH----------HTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccccc----ch--------------hhHHHHHHH----------HhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9876321 11 122222221 12378999999999999999999998875
No 100
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.60 E-value=8.5e-15 Score=126.60 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=87.2
Q ss_pred CcceeeeecCCccccc-ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQR-RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r-~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+++||++|++.++ ..|.+++++++++|+|+|+++. .++.....|+..+.......++|++|++||+
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNM----------ASFHSLPSWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3788999999999887 5799999999999999999987 6677777777777665445679999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec---CchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD---TENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d---~~nI~~vf~~v~~~I 323 (334)
|+...+. .. .+.+..+. . ...+.+++|||++ +.+|.++|..+.+.+
T Consensus 120 Dl~~~~~--~~----------------~~~~~~~~--------~--~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 120 DLREQIQ--VP----------------TDLAQRFA--------D--AHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cchhhcC--CC----------------HHHHHHHH--------H--HcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 9865431 11 11111111 1 1236789999999 899999999988755
No 101
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.4e-14 Score=126.51 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=90.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.++|||++||+.++..|..++.+++++|+|+|+++. .++.+...|+..+... ...+.|++|++||.|
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~D 117 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK----------ASFDNIRAWLTEIKEY-AQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCcEEEEEEccc
Confidence 36789999999999999999999999999999999997 6677777777766553 234789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
+..++. . ..+.+..+. + ...+.++++||+++.||.++|.++.+.+.....
T Consensus 118 l~~~~~---~---------------~~~~~~~l~-~---------~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 118 MSGERV---V---------------KREDGERLA-K---------EYGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred chhccc---c---------------CHHHHHHHH-H---------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 865321 0 011111111 1 123568999999999999999999999887653
No 102
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.59 E-value=2.3e-14 Score=127.92 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=97.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccc----ccc----ccccccCCCeEEEEEeCCCc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQ----RRK----WFQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~----r~k----w~~~f~~v~~iIfv~dls~~ 208 (334)
+.|.+.|.||..+-... ..+.+++ +.+++|||+|++.+ ..- ...++++++++|+|+|+++.
T Consensus 23 ~~f~~~~~pt~~~~~~~---------~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~ 93 (198)
T cd04142 23 QEFPEEYIPTEHRRLYR---------PAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSP 93 (198)
T ss_pred CCCCcccCCccccccce---------eEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCH
Confidence 56667788876422111 1222333 67889999997642 122 33457899999999999997
Q ss_pred cchhhcccccccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHH
Q psy3651 209 DQTLVEDRRTNRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLN 286 (334)
Q Consensus 209 d~~l~ed~~~nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~ 286 (334)
.+++....|++.+.+.. ...++|++|++||+|+..++. .. .+.+..+..
T Consensus 94 ----------~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~--~~----------------~~~~~~~~~- 144 (198)
T cd04142 94 ----------DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF--AP----------------RHVLSVLVR- 144 (198)
T ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccc--cc----------------HHHHHHHHH-
Confidence 77888888888887764 246789999999999966432 11 111111111
Q ss_pred HHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 287 YFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 287 ~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+...+.+++|||++|.||+++|+.+.+.++.+
T Consensus 145 --------~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 145 --------KSWKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred --------HhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 11346789999999999999999999888754
No 103
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.59 E-value=9.2e-15 Score=126.16 Aligned_cols=116 Identities=17% Similarity=0.212 Sum_probs=90.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..+..++++++++|||+|+++. +++.....|+.++.... .+++|++|++||.|
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~D 120 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLTSWLEDARQHS-NSNMTIMLIGNKCD 120 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence 46899999999999999999999999999999999986 67777777887776543 36789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++- . +.+.+..+.. ...+.++++||+++.||.++|.++.+.+++
T Consensus 121 l~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 121 LESRRE----V--------------SYEEGEAFAK----------EHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred cccccC----C--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 864321 0 1112221221 124678999999999999999999988764
No 104
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=2e-14 Score=123.31 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=87.8
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+++ ..+.+||++||+.++..|..++++++++|+|+|+++. .++.+...|+..+.... ..++|++
T Consensus 44 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~i 112 (165)
T cd01864 44 TLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRR----------SSFESVPHWIEEVEKYG-ASNVVLL 112 (165)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEE
Confidence 344444 6789999999999999999999999999999999997 66666667777765532 3578999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+|+||+|+...+. . ..+.+..+.+ . .+...++++||+++.|++++|+++.+.
T Consensus 113 vv~nK~Dl~~~~~----~--------------~~~~~~~~~~--------~-~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 113 LIGNKCDLEEQRE----V--------------LFEEACTLAE--------K-NGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEECcccccccc----c--------------CHHHHHHHHH--------H-cCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999865421 0 1111211111 1 123467899999999999999998764
No 105
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=3.5e-14 Score=127.67 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=90.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.++..|..++.+++++|+|+|+++. .++.....|+..+.... ..+.|+++++||+|
T Consensus 54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~----------~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~D 122 (210)
T PLN03108 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHA-NANMTIMLIGNKCD 122 (210)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 36789999999999999999999999999999999997 66766667777665432 35789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+..++. . ..+.+.++.. ...+.++++||+++.||.++|.++.+.++++
T Consensus 123 l~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 123 LAHRRA----V--------------STEEGEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CccccC----C--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 865431 1 1112222221 1346789999999999999999999998865
No 106
>KOG0395|consensus
Probab=99.58 E-value=1.8e-14 Score=128.54 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=113.5
Q ss_pred hCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 137 VNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 137 ~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.+.|.++|.||.+|..+.... + .-....+.|+|++||+.+..+-..|..+++|.+.|+|+++.
T Consensus 24 ~~~~f~~~y~ptied~y~k~~~-v-------~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~-------- 87 (196)
T KOG0395|consen 24 LTGRFVEDYDPTIEDSYRKELT-V-------DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR-------- 87 (196)
T ss_pred cccccccccCCCccccceEEEE-E-------CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH--------
Confidence 3467889999999986443222 1 12345677999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.+|++...+++.|...+....+|++|++||+||...|. ++. +++..+ +..
T Consensus 88 --~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----V~~--------------eeg~~l----------a~~ 137 (196)
T KOG0395|consen 88 --SSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ----VSE--------------EEGKAL----------ARS 137 (196)
T ss_pred --HHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc----cCH--------------HHHHHH----------HHh
Confidence 99999999999998878888899999999999988643 111 222111 112
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
..+.+++|||+...||.++|..+...+-.
T Consensus 138 ~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 138 WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 45668999999999999999999998876
No 107
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.58 E-value=3e-14 Score=122.24 Aligned_cols=140 Identities=15% Similarity=0.222 Sum_probs=94.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCccc-ccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRS-QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~-~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~ 217 (334)
+.|.+.|.||..+.... ...+..+.+.+++||++|+.. ....+..++++++++|+|+|+++.
T Consensus 22 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~--------- 84 (165)
T cd04146 22 KRFIGEYDPNLESLYSR--------QVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR--------- 84 (165)
T ss_pred CccccccCCChHHhceE--------EEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH---------
Confidence 45557788876433211 112222346789999999996 356688899999999999999997
Q ss_pred cccHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 218 TNRLHESRNIFDTIINNVI-FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 218 ~nrl~esl~lf~~i~~~~~-~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.+++....|+..+..... ..++|++|++||+|+..++. + ..+.+..+.+ .
T Consensus 85 -~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------v------------~~~~~~~~~~----------~ 135 (165)
T cd04146 85 -SSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQ------V------------STEEGEKLAS----------E 135 (165)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc------c------------CHHHHHHHHH----------H
Confidence 666666666665554332 45789999999999854321 0 1111211111 1
Q ss_pred CCeEEEEEeeecC-chHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDT-ENIKIVFNAVKNTIL 324 (334)
Q Consensus 297 ~~i~~~~tsA~d~-~nI~~vf~~v~~~I~ 324 (334)
.+..++++||+++ .||.++|.++.+.+.
T Consensus 136 ~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 136 LGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred cCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 2356889999999 599999999988654
No 108
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.58 E-value=1.1e-14 Score=125.69 Aligned_cols=130 Identities=22% Similarity=0.337 Sum_probs=99.5
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||.|++...+...+..+.+||++|++..+..|..++++++++++|+|.++. .++.+...++..+.....
T Consensus 43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~----------~~~~~~~~~~~~~~~~~~ 112 (173)
T cd04155 43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK----------KRLEEAGAELVELLEEEK 112 (173)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhChh
Confidence 3567777677777889999999999999999999999999999999999986 677777778877776655
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|+++++||+|+.... ....+.+ . .++.....+.+++..+||++++|++++|
T Consensus 113 ~~~~p~ivv~nK~D~~~~~---~~~~i~~---------------------~-l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 113 LAGVPVLVFANKQDLATAA---PAEEIAE---------------------A-LNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred hcCCCEEEEEECCCCccCC---CHHHHHH---------------------H-cCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 5679999999999985431 1111111 1 1222222355677899999999999999
Q ss_pred HHHHH
Q psy3651 317 NAVKN 321 (334)
Q Consensus 317 ~~v~~ 321 (334)
+|+.+
T Consensus 168 ~~l~~ 172 (173)
T cd04155 168 NWVCK 172 (173)
T ss_pred HHHhc
Confidence 99865
No 109
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.57 E-value=3.3e-14 Score=121.66 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=86.0
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+++||++|++..+..|..++++++++|+|+|+++. +++.+...|+..+.... ..+.|++|++||.|+
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl 120 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKK----------QTFENVERWLKELRDHA-DSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence 6789999999999999999999999999999999986 66777677777765542 346899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
...+. . ..+....+.. ..++.++++||+++.||+++|+++.+.|
T Consensus 121 ~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 121 RHLRA--V----------------PTEEAKAFAE----------KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ccccc--C----------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 65421 1 0111111111 1246789999999999999999998765
No 110
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.57 E-value=1.7e-14 Score=122.87 Aligned_cols=113 Identities=12% Similarity=0.187 Sum_probs=88.2
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.+...|..++++++++|+|+|+++. .+++....|+..+.......+.|+++++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D 117 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRR----------DTFTNLETWLNELETYSTNNDIVKMLVGNKID 117 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence 46789999999999999999999999999999999987 67777777777776665557899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+....+ .. +.+..+.. ...+.++++||+++.|+.++|+++.+.
T Consensus 118 ~~~~~~--~~-----------------~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 118 KENREV--TR-----------------EEGLKFAR----------KHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccccc--CH-----------------HHHHHHHH----------HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 874322 11 11111111 134678999999999999999988764
No 111
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=1.8e-14 Score=125.01 Aligned_cols=136 Identities=10% Similarity=0.085 Sum_probs=93.0
Q ss_pred CCCC-CCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcc
Q psy3651 139 SPLF-QDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215 (334)
Q Consensus 139 ~~f~-~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed 215 (334)
+.|. .+|.||..+-.. ...+.+++ ..+.+||+||++.++..|..||++++++|||+|+++.
T Consensus 27 ~~f~~~~~~~T~~~~~~---------~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~------- 90 (169)
T cd01892 27 RSFSLNAYSPTIKPRYA---------VNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDP------- 90 (169)
T ss_pred CCCCcccCCCccCcceE---------EEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCH-------
Confidence 5565 677777643221 11222333 6788999999999999999999999999999999986
Q ss_pred cccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 216 ~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.++.....+++.+.. ..++|+++++||+|+..++- .. .. .+.++ .++
T Consensus 91 ---~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~---~~-~~--------------~~~~~-~~~-------- 137 (169)
T cd01892 91 ---KSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQ---RY-EV--------------QPDEF-CRK-------- 137 (169)
T ss_pred ---HHHHHHHHHHHHhcc---CCCCeEEEEEEccccccccc---cc-cc--------------CHHHH-HHH--------
Confidence 566666666665422 24789999999999865421 10 00 00111 111
Q ss_pred CCCe-EEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 296 KKPL-FHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 296 ~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
.++ .++++||+++.|+.++|+.+.+.++
T Consensus 138 -~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 138 -LGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred -cCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 111 2478999999999999999998775
No 112
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.57 E-value=4.7e-14 Score=120.24 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=89.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.++++.+||++|++.++..|..++++++++|||+|+++. .++..+..++..+..... .+.|+++++||+
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~ 116 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSE----------ESFEKAKSWVKELQRNAS-PNIIIALVGNKA 116 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence 457899999999999999999999999999999999987 677788888887766533 678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+...+- .+ .+.+..+... ..+.++++||+++.|+.++|+++.+.|
T Consensus 117 D~~~~~~----~~--------------~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 117 DLESKRQ----VS--------------TEEAQEYADE----------NGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cccccCc----CC--------------HHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9864321 11 1111111111 236789999999999999999998875
No 113
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=2.6e-14 Score=125.98 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=88.8
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+.+||++|++.++..|..+|++++++|+|+|+++. .++.+...|.+.+.+. ..+.|++|++||.|+
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDS----------SSFERAKFWVKELQNL--EEHCKIYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhc--CCCCCEEEEEEcccc
Confidence 6678999999999999999999999999999999997 6676666666666553 247899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
....- ....+ ..+.+.+|.. ...+.++++||+++.||.++|+++.+.+.+...
T Consensus 118 ~~~~~--~~~~v------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 118 IEQDR--SLRQV------------DFHDVQDFAD----------EIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred ccccc--ccCcc------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 54210 00000 1112222211 123567899999999999999999999887543
No 114
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.56 E-value=3.3e-14 Score=121.18 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=86.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+++||++||+.++..|.+++++++++|+|+|+++. .++.....|+..+... ...++|++|++||.|
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 116 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNR----------TSFEALPTWLSDARAL-ASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCeEEEEEEchh
Confidence 36789999999999999999999999999999999997 5666666666655432 236789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+..++. .+.+.+..+.. ...+.++++||+++.||.++|+++.+.+
T Consensus 117 ~~~~~~------------------~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 117 LADQRE------------------VTFLEASRFAQ----------ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred cchhcc------------------CCHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 865321 01122221221 1236799999999999999999998753
No 115
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=2e-14 Score=129.83 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=89.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++||+.++..|..++++++++|+|+|+++. ..+.....|+..+... ...+.|++|++||+|
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D 128 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVQRWLRELRDH-ADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-CCCCCeEEEEEEChh
Confidence 37899999999999999999999999999999999987 5666666666665543 235789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+...+- . ..+.+..+. . ...+.+++|||+++.||.++|+++...|.+.
T Consensus 129 l~~~~~----~--------------~~~~~~~l~--------~--~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 129 LNHLRS----V--------------AEEDGQALA--------E--KEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred cccccC----C--------------CHHHHHHHH--------H--HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 854321 0 011111111 1 1347799999999999999999999988764
No 116
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.56 E-value=4.4e-14 Score=120.24 Aligned_cols=111 Identities=13% Similarity=0.208 Sum_probs=82.5
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+++++||++||+.++..|..|+++++++++|+|+++. .++.....|...+.. ...+.|++|++||.|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D 117 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDR----------ESFEAIESWKEKVEA--ECGDIPMVLVQTKID 117 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence 47899999999999999999999999999999999997 555555555555433 235789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+..+.. . ..+.+..+.. ..+++++++||+++.|+.++|+++..
T Consensus 118 l~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 118 LLDQAV----I--------------TNEEAEALAK----------RLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cccccC----C--------------CHHHHHHHHH----------HcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 865421 0 0111111111 12356889999999999999999875
No 117
>KOG0088|consensus
Probab=99.56 E-value=9.3e-15 Score=123.17 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=92.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.||||+||+++..+-+.||++.+++|+|+|++|. .+|+....|..++-.-. -..+.+++|+||+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr----------dSFqKVKnWV~Elr~ml-Gnei~l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR----------DSFQKVKNWVLELRTML-GNEIELLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch----------HHHHHHHHHHHHHHHHh-CCeeEEEEecCcc
Confidence 346789999999999999999999999999999999998 67777777777765532 2457899999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
||.+++- +. .++|..|.+. -...+.+|||+++.+|.++|..+...+++..
T Consensus 129 DLEeeR~----Vt--------------~qeAe~YAes----------vGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 129 DLEEERQ----VT--------------RQEAEAYAES----------VGALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred cHHHhhh----hh--------------HHHHHHHHHh----------hchhheecccccccCHHHHHHHHHHHHHHHh
Confidence 9988753 11 1223223221 2344789999999999999999998888654
No 118
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.56 E-value=1e-13 Score=119.08 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=88.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEe
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLN 247 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lN 247 (334)
.+.+++||++|++.+...|..++++++++|+|+|+++. .++.+...|+..+...- ...++|+++++|
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP----------KSFESLDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 36788999999999999999999999999999999986 55666656666554432 134789999999
Q ss_pred CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+|+..++. . ..+....+... ...+.++++||+++.|+.++|+++.+.++++
T Consensus 118 K~Dl~~~~~--~----------------~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 118 KIDLEEKRQ--V----------------STKKAQQWCQS---------NGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred Ccccccccc--c----------------CHHHHHHHHHH---------cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999974221 0 01111111111 1236789999999999999999999988876
No 119
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.56 E-value=8.2e-14 Score=120.39 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=94.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+.... ...+.-+.+.+.+||++||+.++..|..++.+++++++|+|+++.
T Consensus 24 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~---------- 85 (175)
T cd01870 24 DQFPEVYVPTVFENYVA--------DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP---------- 85 (175)
T ss_pred CCCCCCCCCccccceEE--------EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH----------
Confidence 45666788876543211 111222346789999999999999999999999999999999986
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++......|...+.. ...+.|++|++||.|+..+.. ....+.. ........+.+.++..+ .+.
T Consensus 86 ~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~--~~~~i~~----~~~~~v~~~~~~~~~~~---------~~~ 149 (175)
T cd01870 86 DSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEH--TRRELAK----MKQEPVKPEEGRDMANK---------IGA 149 (175)
T ss_pred HHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChh--hhhhhhh----ccCCCccHHHHHHHHHH---------cCC
Confidence 4555544433333332 235789999999999865321 1111111 00111112222212111 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
..+++|||+++.||+++|+++.+.
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHH
Confidence 468899999999999999998864
No 120
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.56 E-value=2.1e-14 Score=121.62 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=84.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|+..++..|..++.+++++|+|+|+++. +++.+...+++.+..... .+.|+++++||+|
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D 116 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDA----------DSFQKVKKWIKELKQMRG-NNISLVIVGNKID 116 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CCCeEEEEEECcc
Confidence 46789999999999999999999999999999999997 566666666666654322 3789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+...+- .. .+...++.. ...+.++++||+++.|+.++|+++.+.+
T Consensus 117 ~~~~~~----~~--------------~~~~~~~~~----------~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 117 LERQRV----VS--------------KSEAEEYAK----------SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cccccC----CC--------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 874321 00 011111111 1235678999999999999999998765
No 121
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.55 E-value=3e-14 Score=121.73 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=84.5
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|.+++++++++|||+|+++. .++.+...|++.+.... .+.|++|++||.|
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~D 118 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNK----------ASFENCSRWVNKVRTAS--KHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence 37789999999999999999999999999999999986 56666666666665532 5689999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+..+.- +. ...+..+. ....+.++.+||+++.||.++|+++.+.+
T Consensus 119 l~~~~~------~~------------~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 119 LADKAE------VT------------DAQAQAFA----------QANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cccccC------CC------------HHHHHHHH----------HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 854321 10 00111110 01235688999999999999999998765
No 122
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.54 E-value=4.7e-14 Score=119.89 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.++|.||..|..... ..+..+.+.+.+||++||..+...|..++++++++++|+|+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---------- 84 (164)
T cd04139 23 DEFVEDYEPTKADSYRKK--------VVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDM---------- 84 (164)
T ss_pred CCCccccCCcchhhEEEE--------EEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCH----------
Confidence 455567888765543211 11222447789999999999999999999999999999999986
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++.....++..+.......+.|+++++||+|+..++. .+. +....+.. ...
T Consensus 85 ~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----~~~--------------~~~~~~~~----------~~~ 136 (164)
T cd04139 85 ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----VSS--------------EEAANLAR----------QWG 136 (164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccc----cCH--------------HHHHHHHH----------HhC
Confidence 56777777777777654456799999999999866321 011 11111111 123
Q ss_pred eEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+.++++||+++.|+.++|+++.+.+.+
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999887653
No 123
>KOG0097|consensus
Probab=99.53 E-value=2.2e-14 Score=118.80 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=96.8
Q ss_pred eecceeEE--EEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 158 ATKGITEF--TIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 158 ~T~Gi~~~--~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
-|+|+... -+++ ..++++|||++||+++|....+||+++.+.+.|+|++... +.|.+..++.--.++
T Consensus 42 htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs-------tynhlsswl~dar~l-- 112 (215)
T KOG0097|consen 42 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------TYNHLSSWLTDARNL-- 112 (215)
T ss_pred cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh-------hhhhHHHHHhhhhcc--
Confidence 35666522 2333 4589999999999999999999999999999999999862 225554444433333
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
..+++.|+|++||.||..++- ..+++|+.|.. ...+.+.++||++|+||+
T Consensus 113 --tnpnt~i~lignkadle~qrd------------------v~yeeak~fae----------engl~fle~saktg~nve 162 (215)
T KOG0097|consen 113 --TNPNTVIFLIGNKADLESQRD------------------VTYEEAKEFAE----------ENGLMFLEASAKTGQNVE 162 (215)
T ss_pred --CCCceEEEEecchhhhhhccc------------------CcHHHHHHHHh----------hcCeEEEEecccccCcHH
Confidence 336789999999999977642 23555554433 246778999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILHR 326 (334)
Q Consensus 314 ~vf~~v~~~I~~~ 326 (334)
+.|-...+.|.++
T Consensus 163 dafle~akkiyqn 175 (215)
T KOG0097|consen 163 DAFLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988875
No 124
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=1.1e-13 Score=123.09 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=99.6
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
++|.+.|.||..+. ....+.+++ +++++||++|+..++..|..++.+++++|||+|+++.
T Consensus 22 ~~~~~~~~~t~~~~----------~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~-------- 83 (198)
T cd04147 22 DTFEPKYRRTVEEM----------HRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDP-------- 83 (198)
T ss_pred CCCCccCCCchhhh----------eeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCH--------
Confidence 44556677765432 112233333 6789999999999999999999999999999999986
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
..+.+...++..+.......++|++|++||+|+...+ .. +. .+.+. +++ .. .
T Consensus 84 --~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---~~--v~------------~~~~~----~~~-~~----~ 135 (198)
T cd04147 84 --ESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE---RQ--VP------------AKDAL----STV-EL----D 135 (198)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc---cc--cc------------HHHHH----HHH-Hh----h
Confidence 6777787888888776555679999999999986521 11 10 01111 110 00 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
..+.++++||+++.||.++|+++.+.+.
T Consensus 136 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 2345788999999999999999998765
No 125
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.53 E-value=1.7e-13 Score=116.50 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=88.2
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+.+||++|+..+...|..++++++++|+|+|+++. .++++...|+..+..... .+.|+++++||+|+
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~ 117 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNR----------ESFENLKNWLKELREYAD-PNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence 6789999999999999999999999999999999987 677777776666655432 57899999999997
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
..... . +.+.+.++.. ...+.++++||+++.|+.++|+++.+.+.+
T Consensus 118 ~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 118 EDQRQ----V--------------SREEAEAFAE----------EHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred ccccC----C--------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 54211 0 1122222221 123568999999999999999999988764
No 126
>PLN03118 Rab family protein; Provisional
Probab=99.53 E-value=1.6e-13 Score=123.23 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=88.2
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++||+.++..|..++++++++|+|+|+++. .++.+...+|...+.. ....+.|++|++||+
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~----------~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR----------ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 36789999999999999999999999999999999997 5666666666555542 223567999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. +. .+.+..+.. ...+.++++||+++.||+++|+++.+.+...
T Consensus 131 Dl~~~~~------i~------------~~~~~~~~~----------~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 131 DRESERD------VS------------REEGMALAK----------EHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred cccccCc------cC------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9865421 10 111111111 1346689999999999999999999988754
No 127
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.53 E-value=5.6e-14 Score=119.49 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=86.4
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+++||++|+..++..|..++++++++|+|+|+++. +++.+...++..+.... ..+.|++|++||.|+
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR----------QSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhc
Confidence 6789999999999999999999999999999999997 77888888888776543 237899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
...+. .... .+..+.. ...+.++++||+++.|++++|+++.+.
T Consensus 118 ~~~~~----~~~~--------------~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 118 SDKRQ----VSTE--------------EGEKKAK----------ELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cccCc----cCHH--------------HHHHHHH----------HhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 54321 1111 1111111 123678999999999999999999874
No 128
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.49 E-value=2.1e-13 Score=118.65 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=94.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+++||++|++.++..|..++.+++++|+|+|+++. ..+++...++..+.+.....+.|++|++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR----------KSFEVVKVIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence 35678999999999999999999999999999999997 78888999999998876556789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
+...+. .+. +....+. + ....+++.+||+++.|+.++|.++.+.+.+...
T Consensus 118 l~~~~~----~~~--------------~~~~~~~-~---------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 118 LHTQRQ----VST--------------EEGKELA-E---------SWGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred hhhcCc----cCH--------------HHHHHHH-H---------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 854321 000 0111011 0 123568899999999999999999998876644
No 129
>KOG0393|consensus
Probab=99.48 E-value=3.4e-13 Score=119.24 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651 138 NSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217 (334)
Q Consensus 138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~ 217 (334)
.+.|..+|+||.-|-..+. +-+. +-+.+.+.+|||+||+.+.+.|+..|.++|.+|.|+++++.
T Consensus 26 ~~~fp~~yvPTVFdnys~~---v~V~----dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p--------- 89 (198)
T KOG0393|consen 26 TNAFPEEYVPTVFDNYSAN---VTVD----DGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSP--------- 89 (198)
T ss_pred cCcCcccccCeEEccceEE---EEec----CCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCCh---------
Confidence 3578899999987653332 1111 12346789999999999999999999999999999999998
Q ss_pred cccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 218 TNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 218 ~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++++.. +|+-++..+ .+++|+||+|+|.||-...- ....+... ...+...+.+. .+.+. -
T Consensus 90 -~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~--~~~~l~~~----~~~~Vt~~~g~--------~lA~~-i 151 (198)
T KOG0393|consen 90 -ESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPS--TLEKLQRQ----GLEPVTYEQGL--------ELAKE-I 151 (198)
T ss_pred -hhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHH--HHHHHHhc----cCCcccHHHHH--------HHHHH-h
Confidence 7787754 455555443 38899999999999974321 11112111 11122233321 11111 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
....++++||+...|++++|+......+.
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 33668999999999999999988887765
No 130
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.48 E-value=8.7e-13 Score=113.10 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=95.0
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.+...|.||..+...... .+....+.+++||++||..+...+..+++.++++++|+|+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---------- 84 (171)
T cd00157 23 GKFPTEYVPTVFDNYSATV--------TVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSP---------- 84 (171)
T ss_pred CCCCCCCCCceeeeeEEEE--------EECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCH----------
Confidence 4455677887654322211 1112346789999999998888888889999999999999986
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~ 298 (334)
.++.+....|...+... ..+.|+++++||+|+....- ....+ .+....-..+.+.++... ...
T Consensus 85 ~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~-----~~~~~~v~~~~~~~~~~~---------~~~ 147 (171)
T cd00157 85 SSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDEN--TLKKL-----EKGKEPITPEEGEKLAKE---------IGA 147 (171)
T ss_pred HHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchh--hhhhc-----ccCCCccCHHHHHHHHHH---------hCC
Confidence 56666665444443332 24799999999999876432 11111 011111112222222111 122
Q ss_pred eEEEEEeeecCchHHHHHHHHHH
Q psy3651 299 LFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 299 i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
..++++||+++.|+.++|+++.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 37899999999999999998875
No 131
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.48 E-value=2.7e-13 Score=123.01 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=84.4
Q ss_pred eCcceeeeecCCccccccccccccc-CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFD-SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~-~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
....+.+||++||+ ......|+. +++++|+|+|+++. .++.....++..+.+.....+.|+|||+||
T Consensus 48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~----------~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDR----------SSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 45778999999998 223345666 99999999999997 667777777777766544568999999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+|+..++. ... +.+..+. ....+.+++|||+++.||.++|+++.+.+..
T Consensus 116 ~Dl~~~~~----v~~--------------~~~~~~a----------~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 116 SDLARSRE----VSV--------------QEGRACA----------VVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred hhccccce----ecH--------------HHHHHHH----------HHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 99865321 111 1111111 0123568899999999999999999998863
No 132
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=5.2e-13 Score=114.58 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=83.6
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+.+ +.+.+||++|++.++..|..++..++++|+|+|+++. .++.....|+..+... .-.+.|++
T Consensus 48 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~~~i 116 (169)
T cd04114 48 TVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE----------ESFRCLPEWLREIEQY-ANNKVITI 116 (169)
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCCCeEE
Confidence 344444 6788999999999999999999999999999999986 4454444444443221 22468999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+++||+|+...+- -... +.+.|... ....++++||+++.|++++|+++.+.+
T Consensus 117 ~v~NK~D~~~~~~--i~~~---------------------~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 117 LVGNKIDLAERRE--VSQQ---------------------RAEEFSDA-----QDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEEECcccccccc--cCHH---------------------HHHHHHHH-----cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999864321 0001 11112211 235688999999999999999998765
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=5.9e-13 Score=112.47 Aligned_cols=136 Identities=19% Similarity=0.197 Sum_probs=98.9
Q ss_pred CCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651 140 PLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217 (334)
Q Consensus 140 ~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~ 217 (334)
.+...|.||..+.. ...+... ...+++||++|+......|..++++++++|+|+|+++.
T Consensus 23 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~--------- 83 (160)
T cd00876 23 TFVEEYDPTIEDSY----------RKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR--------- 83 (160)
T ss_pred CCCcCcCCChhHeE----------EEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH---------
Confidence 35567777765321 1122232 46789999999999999999999999999999999997
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 218 ~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
..+.+...++..+.+.......|+++++||+|+...+- . +.+.+..+..+ .
T Consensus 84 -~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~--------------~~~~~~~~~~~----------~ 134 (160)
T cd00876 84 -ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ----V--------------SKEEGKALAKE----------W 134 (160)
T ss_pred -HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce----e--------------cHHHHHHHHHH----------c
Confidence 67778888888887764446799999999999876321 0 11222222221 1
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+++.+||+++.||+++|+++.+.|
T Consensus 135 ~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 135 GCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 25688999999999999999998753
No 134
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=7.9e-13 Score=118.96 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=88.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+++.+.+||++|++.++..|..|+.+++++|+|+|+++. .++.+...|+..+... ..+.|+++++||+
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~ 123 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR----------ITYKNVPNWHRDIVRV--CENIPIVLVGNKV 123 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 458899999999999999999999999999999999987 6666666777666543 3678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+....+ ... . ..+ .. ...+.++++||+++.|++++|.++...++.+
T Consensus 124 Dl~~~~~--~~~-----------------~-~~~-----~~-----~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 124 DVKDRQV--KAR-----------------Q-ITF-----HR-----KKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred cCccccC--CHH-----------------H-HHH-----HH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 9854322 110 0 001 11 1346788999999999999999999988753
No 135
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.44 E-value=5.9e-13 Score=114.62 Aligned_cols=121 Identities=20% Similarity=0.207 Sum_probs=85.4
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.++++.+||++|+..++..|..++.+++++++|+|+++. .++.+....|...+.... .+.|++|++||+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~ 113 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP----------STLERIRTKWLPLIRRLG-VKVPIILVGNKS 113 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence 457899999999999889999999999999999999986 566655443433333222 478999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+...+. .. .+. .....+.++|.. ...+++|||+++.|++++|..+.+.+++
T Consensus 114 Dl~~~~~--~~-~~~--------------~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 114 DLRDGSS--QA-GLE--------------EEMLPIMNEFRE-------IETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred hcccccc--hh-HHH--------------HHHHHHHHHHhc-------ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 9966432 10 011 111122222211 1257899999999999999999888764
No 136
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.44 E-value=7.6e-13 Score=110.83 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=84.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.+||++|++.++..|..++.+++++|+|+|+++. ..+.+...++..+.... ..+.|+++++||+
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 115 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNR----------ESFENLDKWLKELKEYA-PENIPIILVGNKI 115 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCcEEEEEEcc
Confidence 357889999999999999999999999999999999986 56666667676666542 2568999999999
Q ss_pred Ccchhh-hccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 250 DLLAEK-LRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 250 Dl~~ek-i~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
|+...+ . . .+.+.++.. ...+.++++||+++.+|.++|+++.
T Consensus 116 D~~~~~~~--~-----------------~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 116 DLEDQRQV--S-----------------TEEAQQFAK----------ENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccccccc--c-----------------HHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHh
Confidence 986221 1 1 111111111 1346789999999999999999875
No 137
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.42 E-value=2.9e-12 Score=112.78 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=86.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN-IFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++||+.++..+..++++++++|+|+|+++. ..+.+... |...+.+. ..++|++|++||.
T Consensus 48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~----------~s~~~~~~~~~~~i~~~--~~~~piilvgnK~ 115 (187)
T cd04129 48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTP----------DSLENVRTKWIEEVRRY--CPNVPVILVGLKK 115 (187)
T ss_pred EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEeeCh
Confidence 35688999999998888887888999999999999986 55666554 44444332 3569999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 329 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~ 329 (334)
|+..+.. ... ..- .....+.+.+..+.+ . -....+++|||+++.||+++|+++.+.++...-+
T Consensus 116 Dl~~~~~--~~~---~~~---~~~~~~~~~~~~~~~-~--------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 116 DLRQDAV--AKE---EYR---TQRFVPIQQGKRVAK-E--------IGAKKYMECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred hhhhCcc--ccc---ccc---cCCcCCHHHHHHHHH-H--------hCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 9854322 110 000 000011222221111 1 1224689999999999999999999887754433
No 138
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.37 E-value=2.1e-12 Score=115.82 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=63.2
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---------------
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV--------------- 235 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~--------------- 235 (334)
.+.+++||++||+.++..|..||++++++|+|+|+++. .+++....|+.++.+..
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~----------~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~ 122 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR----------KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDS 122 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh----------HHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 36789999999999999999999999999999999998 67777777777776531
Q ss_pred ---CCCCCcEEEEEeCCCcchhh
Q psy3651 236 ---IFRNVSFILFLNKTDLLAEK 255 (334)
Q Consensus 236 ---~~~~~piiL~lNK~Dl~~ek 255 (334)
...++|++|++||.|+..++
T Consensus 123 ~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 123 EQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccCCCCceEEEEEECccchhhc
Confidence 12468999999999997764
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.37 E-value=5.4e-12 Score=107.11 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=81.1
Q ss_pred ecceeEEEEEee-CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 159 TKGITEFTIVIS-NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 159 T~Gi~~~~~~~~-~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
|+++....+.+. +..+++|||+||+.++..+..++.+++++|+|+|+++- ...++...+..+ .. .
T Consensus 37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~-----------~~~~~~~~~~~~-~~--~ 102 (164)
T cd04171 37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG-----------IMPQTREHLEIL-EL--L 102 (164)
T ss_pred eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC-----------ccHhHHHHHHHH-HH--h
Confidence 444444455555 78999999999999887778889999999999999862 223333332221 11 1
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
...|++|++||+|+..+.- +. ...+.+.+.+... ......++.+||+++.|++++|+
T Consensus 103 ~~~~~ilv~NK~Dl~~~~~------~~--------------~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 103 GIKRGLVVLTKADLVDEDW------LE--------------LVEEEIRELLAGT---FLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred CCCcEEEEEECccccCHHH------HH--------------HHHHHHHHHHHhc---CcCCCcEEEEeCCCCcCHHHHHH
Confidence 2248999999999865410 00 0001112222111 01346789999999999999998
Q ss_pred HHHH
Q psy3651 318 AVKN 321 (334)
Q Consensus 318 ~v~~ 321 (334)
.+..
T Consensus 160 ~l~~ 163 (164)
T cd04171 160 YLDE 163 (164)
T ss_pred HHhh
Confidence 8753
No 140
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.36 E-value=2.5e-12 Score=111.49 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=77.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+++.+++|||+|++.++..|..++++++++|+|+|+++.. . .+.+..+..... .+.|+++++||+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~----------~-~~~~~~~~~~~~----~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV----------E-AQTLANFYLALE----NNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc----------c-HhhHHHHHHHHH----cCCCEEEEEECC
Confidence 4577899999999999999999999999999999998741 1 122333333332 467999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+..... . .. .+-+.+. .++ ....++.+||+++.||+++|+++.+.+
T Consensus 130 Dl~~~~~---~-~~-----------------~~~~~~~-~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 130 DLPSADP---E-RV-----------------KQQIEDV-LGL-----DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCCcCCH---H-HH-----------------HHHHHHH-hCC-----CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 9854211 0 00 0011111 111 112478999999999999999998754
No 141
>KOG0077|consensus
Probab=99.34 E-value=3.5e-13 Score=114.58 Aligned_cols=138 Identities=22% Similarity=0.366 Sum_probs=105.7
Q ss_pred ceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651 161 GITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV 240 (334)
Q Consensus 161 Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~ 240 (334)
..+...+.+.+++++.+|.||+..-|+.|..||-.|++|+|.||..+. .|+.||...++.+++.....+.
T Consensus 53 HPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~----------er~~es~~eld~ll~~e~la~v 122 (193)
T KOG0077|consen 53 HPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQ----------ERFAESKKELDALLSDESLATV 122 (193)
T ss_pred CCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhH----------HHhHHHHHHHHHHHhHHHHhcC
Confidence 334456778899999999999999999999999999999999999998 9999999999999999989999
Q ss_pred cEEEEEeCCCcchhhhccccchhhhhCC--CCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651 241 SFILFLNKTDLLAEKLRTSKTSIAEHFP--EFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318 (334)
Q Consensus 241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp--~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~ 318 (334)
|+++.+||+|.... + ...++.-.+- .+.|.... .++.....+++..+.+|...+.+--+.|.|
T Consensus 123 p~lilgnKId~p~a-~--se~~l~~~l~l~~~t~~~~~------------v~~~~~~~rp~evfmcsi~~~~gy~e~fkw 187 (193)
T KOG0077|consen 123 PFLILGNKIDIPYA-A--SEDELRFHLGLSNFTTGKGK------------VNLTDSNVRPLEVFMCSIVRKMGYGEGFKW 187 (193)
T ss_pred cceeecccccCCCc-c--cHHHHHHHHHHHHHhccccc------------ccccCCCCCeEEEEEEEEEccCccceeeee
Confidence 99999999998765 2 2222322110 11111000 011112237788999999999998899988
Q ss_pred HHHHH
Q psy3651 319 VKNTI 323 (334)
Q Consensus 319 v~~~I 323 (334)
+...|
T Consensus 188 l~qyi 192 (193)
T KOG0077|consen 188 LSQYI 192 (193)
T ss_pred hhhhc
Confidence 87654
No 142
>PLN00023 GTP-binding protein; Provisional
Probab=99.33 E-value=4e-12 Score=120.79 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=61.5
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC-----------CCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI-----------FRN 239 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~-----------~~~ 239 (334)
.+.++|||++||+.++..|..||++++++|+|+|+++. ..+.....|++.+..... ..+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr----------~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ 151 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR----------RTKTSLQKWASEVAATGTFSAPLGSGGPGGLP 151 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 36799999999999999999999999999999999997 566666677777765421 235
Q ss_pred CcEEEEEeCCCcchh
Q psy3651 240 VSFILFLNKTDLLAE 254 (334)
Q Consensus 240 ~piiL~lNK~Dl~~e 254 (334)
+|++||+||+||..+
T Consensus 152 ipIILVGNK~DL~~~ 166 (334)
T PLN00023 152 VPYIVIGNKADIAPK 166 (334)
T ss_pred CcEEEEEECcccccc
Confidence 899999999999653
No 143
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.33 E-value=9.7e-12 Score=106.51 Aligned_cols=126 Identities=23% Similarity=0.187 Sum_probs=82.8
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccc----------cccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQ----------CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~----------~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
+|.++....+..++.++++|||+|+.. +..|.. ....++++|+|+|.++... .++.+...+
T Consensus 33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------~~~~~~~~~ 103 (168)
T cd01897 33 TTKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEEQLSL 103 (168)
T ss_pred cccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------cchHHHHHH
Confidence 355566666666778999999999852 222211 1123689999999998521 134555566
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee
Q psy3651 228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV 307 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~ 307 (334)
+..+... +.+.|++|++||+|+....- .... +.+. ....+.+++|||+
T Consensus 104 ~~~l~~~--~~~~pvilv~NK~Dl~~~~~---~~~~----------------------~~~~-----~~~~~~~~~~Sa~ 151 (168)
T cd01897 104 FEEIKPL--FKNKPVIVVLNKIDLLTFED---LSEI----------------------EEEE-----ELEGEEVLKISTL 151 (168)
T ss_pred HHHHHhh--cCcCCeEEEEEccccCchhh---HHHH----------------------HHhh-----hhccCceEEEEec
Confidence 6666432 35789999999999865321 0001 1111 1134668999999
Q ss_pred cCchHHHHHHHHHHHHH
Q psy3651 308 DTENIKIVFNAVKNTIL 324 (334)
Q Consensus 308 d~~nI~~vf~~v~~~I~ 324 (334)
++.|++++|+++.+.++
T Consensus 152 ~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 152 TEEGVDEVKNKACELLL 168 (168)
T ss_pred ccCCHHHHHHHHHHHhC
Confidence 99999999999988763
No 144
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=111.09 Aligned_cols=133 Identities=22% Similarity=0.235 Sum_probs=93.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+++.+|||+||+.++..|..|+.+++++++|+|.++. .++.+....|.+.+......+.|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~----------~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLR----------ESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccc----------hhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 56799999999999999999999999999999999997 77888877777666554335789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee--cCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV--DTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~--d~~nI~~vf~~v~~~I~~~ 326 (334)
++.+.. ....+...+. .... +................ ++.+||+ .+.+|..+|..+...+.+.
T Consensus 123 l~~~~~--~~~~~~~~~~----~~~~------~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 123 LFDEQS--SSEEILNQLN----REVV------LLVLAPKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred cccchh--HHHHHHhhhh----cCcc------hhhhHhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 988753 2222221110 0000 11111011111111223 7899999 9999999999999888653
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.29 E-value=5.5e-11 Score=101.59 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=78.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+|||+|+..++..|..++..++++++|+|.++.+ ..+....+..+.. .+.|+++++||+|
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~D 113 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKID 113 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEcee
Confidence 688999999999999999999999999999999999852 1222223322222 4679999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhc-cCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVK-RDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~-~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+..+.. ..+.. -+. .+.... ......+.++.+||+++.||.++|+++.+.
T Consensus 114 l~~~~~----~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 114 KPNANP----ERVKN-----------------ELS-ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred cccccH----HHHHH-----------------HHH-HhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 864311 01110 000 101000 011234678999999999999999998764
No 146
>KOG4252|consensus
Probab=99.29 E-value=2.5e-12 Score=110.68 Aligned_cols=144 Identities=14% Similarity=0.223 Sum_probs=110.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCcccccceeeeeccee--EE--EEEeeCcceeeeecCCcccccccccccccCCCeEEEEEe
Q psy3651 129 NWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT--EF--TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS 204 (334)
Q Consensus 129 ~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~--~~--~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~d 204 (334)
-+.|+|. |.|..+|.- |+|++ +. .+...++.+.+||+|||+.+......||+++.+.++|++
T Consensus 36 miqryCk---gifTkdykk-----------tIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFS 101 (246)
T KOG4252|consen 36 MIQRYCK---GIFTKDYKK-----------TIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFS 101 (246)
T ss_pred HHHHHhc---ccccccccc-----------ccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEe
Confidence 4677776 777788876 45555 22 233356889999999999999999999999999999999
Q ss_pred CCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651 205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL 284 (334)
Q Consensus 205 ls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi 284 (334)
-+|. .+++..+.|++.+.+. ...+|.+++-||+||.+... -. .+++.
T Consensus 102 TTDr----------~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~--~~----------------~~evE--- 148 (246)
T KOG4252|consen 102 TTDR----------YSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQ--MD----------------KGEVE--- 148 (246)
T ss_pred cccH----------HHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhh--cc----------------hHHHH---
Confidence 9998 8899999999998775 47899999999999987632 11 11111
Q ss_pred HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
.+.+. ....++.||++..-||..+|..+.+...+.
T Consensus 149 -----~lak~--l~~RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 149 -----GLAKK--LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred -----HHHHH--hhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 11111 223467899999999999999999877764
No 147
>KOG1673|consensus
Probab=99.24 E-value=4.4e-11 Score=100.85 Aligned_cols=136 Identities=19% Similarity=0.240 Sum_probs=97.4
Q ss_pred eeeeecceeE--EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 155 ARKATKGITE--FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 155 ~~~~T~Gi~~--~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
.+..|.|++. .++.+++ +.+.+||+||||+++.+.+--..++-+|+|++||+.. ..+.....|+.+
T Consensus 48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r----------~TLnSi~~WY~Q 117 (205)
T KOG1673|consen 48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR----------STLNSIKEWYRQ 117 (205)
T ss_pred HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch----------HHHHHHHHHHHH
Confidence 4567888884 4555555 7889999999999999988888999999999999998 677777788887
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
.... -..+--||+++|.|+|-. + +. ++.. .-...|+.|-+- -+...+++||....
T Consensus 118 Ar~~--NktAiPilvGTKyD~fi~-l--p~-e~Q~---------~I~~qar~YAk~----------mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 118 ARGL--NKTAIPILVGTKYDLFID-L--PP-ELQE---------TISRQARKYAKV----------MNASLFFCSTSHSI 172 (205)
T ss_pred Hhcc--CCccceEEeccchHhhhc-C--CH-HHHH---------HHHHHHHHHHHH----------hCCcEEEeeccccc
Confidence 6542 233344789999998864 2 11 1111 011223333322 23457899999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTILH 325 (334)
Q Consensus 311 nI~~vf~~v~~~I~~ 325 (334)
||+.+|.-+...++.
T Consensus 173 Nv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFN 187 (205)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999988876653
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.24 E-value=5.8e-11 Score=105.11 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=81.3
Q ss_pred EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
...+..++.++.+||++|++.++..|..++++++++|+|+|+++. .......++..+.. .+.|++
T Consensus 57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~----~~~p~i 121 (194)
T cd01891 57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALE----LGLKPI 121 (194)
T ss_pred eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cCCCEE
Confidence 445666788999999999999999999999999999999999873 12223333444332 367999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHH------H
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIV------F 316 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~v------f 316 (334)
|++||+|+..+.. ...+ + -+.+.+..+... ....+.++++||++|.|+.+. .
T Consensus 122 iv~NK~Dl~~~~~---~~~~--------------~----~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~ 180 (194)
T cd01891 122 VVINKIDRPDARP---EEVV--------------D----EVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDL 180 (194)
T ss_pred EEEECCCCCCCCH---HHHH--------------H----HHHHHHHHhCCccccCccCEEEeehhccccccccccchhhH
Confidence 9999999865322 0001 1 111122222111 123567899999999887432 4
Q ss_pred HHHHHHHH
Q psy3651 317 NAVKNTIL 324 (334)
Q Consensus 317 ~~v~~~I~ 324 (334)
.++.+.|.
T Consensus 181 ~~l~~~~~ 188 (194)
T cd01891 181 EPLFDTII 188 (194)
T ss_pred HHHHHHHH
Confidence 44555444
No 149
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.20 E-value=1.9e-10 Score=99.91 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=84.7
Q ss_pred EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
...+...+..+.+||++|+...+..|..++.+++++++|+|.++.. ......++..... .+.|++
T Consensus 54 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~~----~~~~i~ 118 (189)
T cd00881 54 VATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-----------QPQTREHLRIARE----GGLPII 118 (189)
T ss_pred eEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-----------cHHHHHHHHHHHH----CCCCeE
Confidence 3444556788999999999999999999999999999999988742 1222233333322 568999
Q ss_pred EEEeCCCcchh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc--------CCCCCeEEEEEeeecCchHHH
Q psy3651 244 LFLNKTDLLAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR--------DEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 244 L~lNK~Dl~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~--------~~~~~i~~~~tsA~d~~nI~~ 314 (334)
+++||+|+..+ .+ +...+.+++.+..... .......++++||+++.|+.+
T Consensus 119 iv~nK~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 119 VAINKIDRVGEEDL---------------------EEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred EEEECCCCcchhcH---------------------HHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 99999998652 11 0111122222222110 012457789999999999999
Q ss_pred HHHHHHHHH
Q psy3651 315 VFNAVKNTI 323 (334)
Q Consensus 315 vf~~v~~~I 323 (334)
+|+++.+.+
T Consensus 178 l~~~l~~~l 186 (189)
T cd00881 178 LLEAIVEHL 186 (189)
T ss_pred HHHHHHhhC
Confidence 999988764
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.16 E-value=1.6e-10 Score=94.65 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=82.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+||++|+......|..++.+++++|+|+|+++. ..+.....++..........+.|+++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR----------ESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 67899999999999999999999999999999999996 45555555533444444557799999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
+....- ..... .... . .....++++.+||+++.++.++++++.
T Consensus 114 ~~~~~~---~~~~~-------------------~~~~-~----~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 114 LPEERV---VSEEE-------------------LAEQ-L----AKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccccc---hHHHH-------------------HHHH-H----HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 865421 11000 0000 0 112356789999999999999999875
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.14 E-value=2.7e-10 Score=96.16 Aligned_cols=118 Identities=16% Similarity=0.074 Sum_probs=79.6
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccc------ccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRR------KWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|.......+.+.+..+.+|||+|+..+.. .+..++. +++++|+|+|.++. .. ...++..
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~---~~~~~~~ 96 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL----------ER---NLYLTLQ 96 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc----------hh---HHHHHHH
Confidence 34444555666778899999999987664 3677775 99999999999875 22 1233434
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.. .+.|+++++||+|+..... +.. ... -+.+. .++.++.+||.++.
T Consensus 97 ~~~----~~~~~iiv~NK~Dl~~~~~------~~~-------------~~~-~~~~~---------~~~~~~~iSa~~~~ 143 (158)
T cd01879 97 LLE----LGLPVVVALNMIDEAEKRG------IKI-------------DLD-KLSEL---------LGVPVVPTSARKGE 143 (158)
T ss_pred HHH----cCCCEEEEEehhhhccccc------chh-------------hHH-HHHHh---------hCCCeEEEEccCCC
Confidence 433 3589999999999854321 100 000 00111 12468899999999
Q ss_pred hHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNT 322 (334)
Q Consensus 311 nI~~vf~~v~~~ 322 (334)
|+..+|+++.+.
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 152
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.14 E-value=1.7e-10 Score=98.89 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=73.1
Q ss_pred EEeeCc-ceeeeecCCcc----cccccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCC
Q psy3651 167 IVISNI-PFLFVDVGGQR----SQRRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIF 237 (334)
Q Consensus 167 ~~~~~~-~~~i~DvgGq~----~~r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~ 237 (334)
+..++. .+.+|||+|+. ..+..+..++ ++++++|+|+|+++.+ +.+.....+.+.+... +..
T Consensus 42 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---------~~~~~~~~~~~~l~~~~~~~ 112 (170)
T cd01898 42 VRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD---------DPVEDYKTIRNELELYNPEL 112 (170)
T ss_pred EEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC---------CHHHHHHHHHHHHHHhCccc
Confidence 344554 89999999974 2223344444 4699999999999851 1222222333333222 123
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|+++++||+|+..... ... .+... .. ......++.+||+++.|++++|+
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~------~~~-----------------~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEE------LFE-----------------LLKEL-LK----ELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred cccccEEEEEchhcCCchh------hHH-----------------HHHHH-Hh----hCCCCCEEEEecCCCCCHHHHHH
Confidence 5789999999999855321 111 11111 11 01245688999999999999999
Q ss_pred HHHHH
Q psy3651 318 AVKNT 322 (334)
Q Consensus 318 ~v~~~ 322 (334)
++.+.
T Consensus 165 ~i~~~ 169 (170)
T cd01898 165 KLAEL 169 (170)
T ss_pred HHHhh
Confidence 98764
No 153
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.14 E-value=2.6e-10 Score=109.84 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=84.0
Q ss_pred eeeecceeEEEEEe-eCcceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 156 RKATKGITEFTIVI-SNIPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
+.|++| .+.+ ++.++.+||++|... ....|..+++.++++|+|+|+++. ..+++...|
T Consensus 193 ~~p~~G----~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~----------~s~e~~~~~ 258 (335)
T PRK12299 193 LHPNLG----VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAV----------DPVEDYKTI 258 (335)
T ss_pred eCceEE----EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCC----------CCHHHHHHH
Confidence 344454 3444 457899999999842 233555667789999999999986 334444444
Q ss_pred HHHHHhh-cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651 228 FDTIINN-VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA 306 (334)
Q Consensus 228 f~~i~~~-~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA 306 (334)
.+++... +.+.+.|++|++||+|+..+.. .. . +....+ .. ...+.++.|||
T Consensus 259 ~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~--~~---~-------------~~~~~~-----~~-----~~~~~i~~iSA 310 (335)
T PRK12299 259 RNELEKYSPELADKPRILVLNKIDLLDEEE--ER---E-------------KRAALE-----LA-----ALGGPVFLISA 310 (335)
T ss_pred HHHHHHhhhhcccCCeEEEEECcccCCchh--HH---H-------------HHHHHH-----HH-----hcCCCEEEEEc
Confidence 4444332 3345789999999999864321 00 0 001101 10 12356889999
Q ss_pred ecCchHHHHHHHHHHHHHHH
Q psy3651 307 VDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 307 ~d~~nI~~vf~~v~~~I~~~ 326 (334)
++++||+++|+++.+.+.+.
T Consensus 311 ktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 311 VTGEGLDELLRALWELLEEA 330 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.12 E-value=6.5e-10 Score=92.26 Aligned_cols=118 Identities=25% Similarity=0.167 Sum_probs=80.0
Q ss_pred EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCC
Q psy3651 164 EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNV 240 (334)
Q Consensus 164 ~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~ 240 (334)
...+..++ ..+.+||++|+..++..|..++..+.++++++|++..- ..+.+.. .+...+... ...+.
T Consensus 40 ~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v---------~~~~~~~~~~~~~~~~~-~~~~~ 109 (161)
T TIGR00231 40 TTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILV---------LDVEEILEKQTKEIIHH-AESNV 109 (161)
T ss_pred EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeee---------hhhhhHhHHHHHHHHHh-cccCC
Confidence 33355566 78899999999999999999999999999999998751 2333333 222233222 22278
Q ss_pred cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
|+++++||+|+....+ . . .....+.. .....++.+||+++.|+.++|+++.
T Consensus 110 p~ivv~nK~D~~~~~~--~-~---------------------~~~~~~~~-----~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 110 PIILVGNKIDLRDAKL--K-T---------------------HVAFLFAK-----LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred cEEEEEEcccCCcchh--h-H---------------------HHHHHHhh-----ccCCceEEeecCCCCCHHHHHHHhh
Confidence 9999999999855322 0 0 01111111 1223489999999999999999874
No 155
>KOG0096|consensus
Probab=99.12 E-value=1.7e-10 Score=100.23 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=103.7
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEe---eC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI---SN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE 214 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~---~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~e 214 (334)
+.|...|.| |+|+..+...+ .+ ++|..||++||+..-.+-.-||-...+.|+++|++.+
T Consensus 33 geFe~~y~a-----------t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr------ 95 (216)
T KOG0096|consen 33 GEFEKTYPA-----------TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSR------ 95 (216)
T ss_pred ccceecccC-----------cceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeeh------
Confidence 445566666 56766554433 33 8999999999999999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD 294 (334)
Q Consensus 215 d~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~ 294 (334)
.....+-.|.++.+.. ..|+||++.+||.|+...++ +..++.- .
T Consensus 96 ----~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~~--k~k~v~~----------------------------~ 139 (216)
T KOG0096|consen 96 ----FTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARKV--KAKPVSF----------------------------H 139 (216)
T ss_pred ----hhhhcchHHHHHHHHH--hcCCCeeeeccceecccccc--cccccee----------------------------e
Confidence 6677777777777664 36799999999999977654 3333321 1
Q ss_pred CCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 295 EKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 295 ~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
..+++.+++.||+...|.+.-|.|+...+.
T Consensus 140 rkknl~y~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 140 RKKNLQYYEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred ecccceeEEeecccccccccchHHHhhhhc
Confidence 236789999999999999999999988665
No 156
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.09 E-value=1.4e-09 Score=97.49 Aligned_cols=76 Identities=22% Similarity=0.433 Sum_probs=63.2
Q ss_pred eCcceeeeecCCcccccccccccccCC-CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEEEE
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSV-TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFL 246 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v-~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL~l 246 (334)
++..+.+||++|+...|..|..+++++ +++|||+|.++.. +.+.++..++..++.... ..++|++|++
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~---------~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ---------KNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch---------hHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 367899999999999999999999998 9999999999961 467777777777665432 2578999999
Q ss_pred eCCCcchh
Q psy3651 247 NKTDLLAE 254 (334)
Q Consensus 247 NK~Dl~~e 254 (334)
||+|++.+
T Consensus 117 NK~Dl~~a 124 (203)
T cd04105 117 NKQDLFTA 124 (203)
T ss_pred cchhhccc
Confidence 99999764
No 157
>PRK04213 GTP-binding protein; Provisional
Probab=99.09 E-value=1.1e-09 Score=97.07 Aligned_cols=124 Identities=11% Similarity=0.172 Sum_probs=73.2
Q ss_pred ceeeeecCC-----------ccccccccccccc----CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 173 PFLFVDVGG-----------QRSQRRKWFQCFD----SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 173 ~~~i~DvgG-----------q~~~r~kw~~~f~----~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
.+.+|||+| |+..|..|.+|+. .++++++|+|.+++.+....-.....+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 689999999 7788888888875 357889999987652211000000112222333333322
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf 316 (334)
.++|++|++||+|+..++- .... -+.+. .++... ......++.|||+++ ||.++|
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~----~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~SA~~g-gi~~l~ 184 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRD----EVLD------------------EIAER-LGLYPPWRQWQDIIAPISAKKG-GIEELK 184 (201)
T ss_pred cCCCeEEEEECccccCcHH----HHHH------------------HHHHH-hcCCccccccCCcEEEEecccC-CHHHHH
Confidence 4689999999999864320 0000 11111 111000 001124789999999 999999
Q ss_pred HHHHHHHH
Q psy3651 317 NAVKNTIL 324 (334)
Q Consensus 317 ~~v~~~I~ 324 (334)
+++.+.+.
T Consensus 185 ~~l~~~~~ 192 (201)
T PRK04213 185 EAIRKRLH 192 (201)
T ss_pred HHHHHhhc
Confidence 99988754
No 158
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.08 E-value=6.4e-10 Score=96.47 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=94.3
Q ss_pred eeeecceeEEEEEeeC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 156 RKATKGITEFTIVISN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
|..|++++.....+.+ ..+.++++.||++++.+|..+++++.++|+++|.+.. ..+ ++..+.+-+-..
T Consensus 51 r~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~----------~~~-~a~~ii~f~~~~ 119 (187)
T COG2229 51 RPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP----------ITF-HAEEIIDFLTSR 119 (187)
T ss_pred cceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC----------cch-HHHHHHHHHhhc
Confidence 4578888888888866 9999999999999999999999999999999999986 444 444444333221
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
..+|++++.||+||+... ..+.+.+++ .+ ....++.+.++|+++++..+
T Consensus 120 ---~~ip~vVa~NK~DL~~a~---ppe~i~e~l----------------------~~---~~~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 120 ---NPIPVVVAINKQDLFDAL---PPEKIREAL----------------------KL---ELLSVPVIEIDATEGEGARD 168 (187)
T ss_pred ---cCCCEEEEeeccccCCCC---CHHHHHHHH----------------------Hh---ccCCCceeeeecccchhHHH
Confidence 118999999999999863 344444431 11 11467789999999999999
Q ss_pred HHHHHHHH
Q psy3651 315 VFNAVKNT 322 (334)
Q Consensus 315 vf~~v~~~ 322 (334)
.++.+...
T Consensus 169 ~L~~ll~~ 176 (187)
T COG2229 169 QLDVLLLK 176 (187)
T ss_pred HHHHHHhh
Confidence 88766543
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.07 E-value=1.5e-09 Score=95.90 Aligned_cols=117 Identities=20% Similarity=0.149 Sum_probs=72.6
Q ss_pred CcceeeeecCCcccccccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLN 247 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lN 247 (334)
+..+.+||++|+... +..++ ..++++++|+|.++..+. ...+.+. +... .+.|+++++|
T Consensus 67 ~~~~~i~DtpG~~~~---~~~~~~~~~~~d~vi~VvD~~~~~~~--------~~~~~~~----~~~~---~~~~~iiv~N 128 (192)
T cd01889 67 NLQITLVDCPGHASL---IRTIIGGAQIIDLMLLVVDATKGIQT--------QTAECLV----IGEI---LCKKLIVVLN 128 (192)
T ss_pred CceEEEEECCCcHHH---HHHHHHHHhhCCEEEEEEECCCCccH--------HHHHHHH----HHHH---cCCCEEEEEE
Confidence 688999999999643 44444 467899999999874110 0111111 1111 2569999999
Q ss_pred CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
|+|+..... ... ..+...+.+...+.... ...+.++.+||++++|+.++++++.+.|.
T Consensus 129 K~Dl~~~~~------~~~----------~~~~~~~~l~~~~~~~~---~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 129 KIDLIPEEE------RER----------KIEKMKKKLQKTLEKTR---FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcccCCHHH------HHH----------HHHHHHHHHHHHHHhcC---cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 999864211 000 01122223333322211 13567899999999999999999998775
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.07 E-value=8.4e-10 Score=94.80 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=78.2
Q ss_pred eEEEEEee-CcceeeeecCCcc----cccccc---cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 163 TEFTIVIS-NIPFLFVDVGGQR----SQRRKW---FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 163 ~~~~~~~~-~~~~~i~DvgGq~----~~r~kw---~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
....+.++ +..+.+||++|+. ..+..| ..++.+++++++|+|.++.+.. ...+.+.+...+..++...
T Consensus 34 ~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~ 109 (176)
T cd01881 34 NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLY 109 (176)
T ss_pred cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHh
Confidence 33345566 8899999999973 233333 3456789999999999986200 0001333333344444332
Q ss_pred cC------CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651 235 VI------FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD 308 (334)
Q Consensus 235 ~~------~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d 308 (334)
.. ..+.|+++++||+|+..... +... +. ... .......++.+||++
T Consensus 110 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------~~~~-----------------~~---~~~--~~~~~~~~~~~Sa~~ 161 (176)
T cd01881 110 DLETILGLLTAKPVIYVLNKIDLDDAEE------LEEE-----------------LV---REL--ALEEGAEVVPISAKT 161 (176)
T ss_pred hhhhHHHHHhhCCeEEEEEchhcCchhH------HHHH-----------------HH---HHH--hcCCCCCEEEEehhh
Confidence 21 24689999999999864321 1110 00 000 112345689999999
Q ss_pred CchHHHHHHHHHHH
Q psy3651 309 TENIKIVFNAVKNT 322 (334)
Q Consensus 309 ~~nI~~vf~~v~~~ 322 (334)
+.|+.++++++...
T Consensus 162 ~~gl~~l~~~l~~~ 175 (176)
T cd01881 162 EEGLDELIRAIYEL 175 (176)
T ss_pred hcCHHHHHHHHHhh
Confidence 99999999988654
No 161
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.06 E-value=1.1e-09 Score=97.55 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=75.0
Q ss_pred ecceeEEEEEeeC-cceeeeecCCcccc---------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 159 TKGITEFTIVISN-IPFLFVDVGGQRSQ---------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 159 T~Gi~~~~~~~~~-~~~~i~DvgGq~~~---------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
|.......+.+.+ ..+.+||++|+... +..| ..+.+++++++|+|+++. ..... ...+
T Consensus 75 t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~----------~~~~~-~~~~ 142 (204)
T cd01878 75 TLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDP----------DYEEQ-IETV 142 (204)
T ss_pred eccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCC----------ChhhH-HHHH
Confidence 3333334444444 38999999998432 2222 236789999999999986 22222 2222
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD 308 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d 308 (334)
...+..-...+.|+++|+||+|+..+.. . .. . . ......++++||++
T Consensus 143 ~~~l~~~~~~~~~viiV~NK~Dl~~~~~--~----~~---------------------~-~-----~~~~~~~~~~Sa~~ 189 (204)
T cd01878 143 EKVLKELGAEDIPMILVLNKIDLLDDEE--L----EE---------------------R-L-----EAGRPDAVFISAKT 189 (204)
T ss_pred HHHHHHcCcCCCCEEEEEEccccCChHH--H----HH---------------------H-h-----hcCCCceEEEEcCC
Confidence 2333322335689999999999865432 0 00 0 0 11234588999999
Q ss_pred CchHHHHHHHHHHH
Q psy3651 309 TENIKIVFNAVKNT 322 (334)
Q Consensus 309 ~~nI~~vf~~v~~~ 322 (334)
+.|+.++|+++.+.
T Consensus 190 ~~gi~~l~~~L~~~ 203 (204)
T cd01878 190 GEGLDELLEAIEEL 203 (204)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 162
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.05 E-value=3.1e-09 Score=93.70 Aligned_cols=131 Identities=11% Similarity=0.164 Sum_probs=91.1
Q ss_pred eeecceeEEEEE--eeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 157 KATKGITEFTIV--ISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 157 ~~T~Gi~~~~~~--~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.-|+......+. ..+..+.++|++|+..+.+........+|++|+|+|..+- -.......+..+..
T Consensus 53 ~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~- 120 (188)
T PF00009_consen 53 GITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILRE- 120 (188)
T ss_dssp TSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHH-
T ss_pred ccccccccccccccccccceeecccccccceeecccceecccccceeeeecccc-----------cccccccccccccc-
Confidence 344455555565 6789999999999999888888889999999999999873 33344555555443
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecCchHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~~nI~ 313 (334)
.+.|+++++||+|+...++ . ...+-+...|.+...... ..++++++||..|.|+.
T Consensus 121 ---~~~p~ivvlNK~D~~~~~~--~-------------------~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~ 176 (188)
T PF00009_consen 121 ---LGIPIIVVLNKMDLIEKEL--E-------------------EIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGID 176 (188)
T ss_dssp ---TT-SEEEEEETCTSSHHHH--H-------------------HHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHH
T ss_pred ---cccceEEeeeeccchhhhH--H-------------------HHHHHHHHHhccccccCccccceEEEEecCCCCCHH
Confidence 5678999999999985543 1 111122222222111222 35889999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 314 IVFNAVKNTI 323 (334)
Q Consensus 314 ~vf~~v~~~I 323 (334)
.+++.+.+.+
T Consensus 177 ~Ll~~l~~~~ 186 (188)
T PF00009_consen 177 ELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9998887654
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.03 E-value=2.3e-09 Score=106.23 Aligned_cols=123 Identities=13% Similarity=0.234 Sum_probs=82.1
Q ss_pred EEEEEeeCcceeeeecCCcccccccc-----------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKW-----------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw-----------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+..++..+.+|||+|++..++.+ ..+++.+|++|+|+|.++. -......++..+.
T Consensus 212 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-----------~~~~~~~~~~~~~ 280 (429)
T TIGR03594 212 DIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-----------ITEQDLRIAGLIL 280 (429)
T ss_pred eEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-----------ccHHHHHHHHHHH
Confidence 34455677889999999998766554 3467899999999999874 1222334454444
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|+++++||+|+..... . + +...+.+...+.. -..+.++++||++|.||
T Consensus 281 ~----~~~~iiiv~NK~Dl~~~~~--~---~--------------~~~~~~~~~~~~~-----~~~~~vi~~SA~~g~~v 332 (429)
T TIGR03594 281 E----AGKALVIVVNKWDLVKDEK--T---R--------------EEFKKELRRKLPF-----LDFAPIVFISALTGQGV 332 (429)
T ss_pred H----cCCcEEEEEECcccCCCHH--H---H--------------HHHHHHHHHhccc-----CCCCceEEEeCCCCCCH
Confidence 3 4689999999999862111 0 1 1111122222111 13467899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILH 325 (334)
Q Consensus 313 ~~vf~~v~~~I~~ 325 (334)
.++|+++.+....
T Consensus 333 ~~l~~~i~~~~~~ 345 (429)
T TIGR03594 333 DKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886654
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.00 E-value=2.2e-09 Score=110.75 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=76.7
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+.+|||+|+..++..|..++++++++|+|+|.++-. . .+....|..... .+.|+++|+||+|+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~----------~-~qt~~~~~~~~~----~~ipiIiViNKiDl 134 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI----------E-AQTLANVYLALE----NDLEIIPVINKIDL 134 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC----------C-HhHHHHHHHHHH----cCCCEEEEEECcCC
Confidence 78999999999999999999999999999999999841 1 122333333332 35799999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
..... . ...+-+.+. .++ ....++.+||+++.||.++|+++.+.+.
T Consensus 135 ~~~~~---~------------------~~~~el~~~-lg~-----~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 135 PSADP---E------------------RVKKEIEEV-IGL-----DASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CccCH---H------------------HHHHHHHHH-hCC-----CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 54211 0 000011111 111 1124688999999999999999987653
No 165
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.00 E-value=1.6e-09 Score=104.07 Aligned_cols=128 Identities=18% Similarity=0.233 Sum_probs=79.9
Q ss_pred eeeecceeEEEEEeeC-cceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 156 RKATKGITEFTIVISN-IPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
+.|++|+. .+.+ ..+.+||++|+.. .+..|..+++.++++|||+|+++.+. .+.+++...+
T Consensus 192 ~~p~ig~v----~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l 260 (329)
T TIGR02729 192 LVPNLGVV----RVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEII 260 (329)
T ss_pred cCCEEEEE----EeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHH
Confidence 45566643 4444 7899999999853 22345555678999999999998521 0222222233
Q ss_pred HHHHHhh-cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651 228 FDTIINN-VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA 306 (334)
Q Consensus 228 f~~i~~~-~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA 306 (334)
.+++... +.+.+.|++|++||+|+..+.. +.+ ..+.+.+. ..+.++.+||
T Consensus 261 ~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~------~~~--------------~~~~l~~~---------~~~~vi~iSA 311 (329)
T TIGR02729 261 RNELKKYSPELAEKPRIVVLNKIDLLDEEE------LAE--------------LLKELKKA---------LGKPVFPISA 311 (329)
T ss_pred HHHHHHhhhhhccCCEEEEEeCccCCChHH------HHH--------------HHHHHHHH---------cCCcEEEEEc
Confidence 3333221 3346789999999999865421 111 00111111 1245789999
Q ss_pred ecCchHHHHHHHHHHHH
Q psy3651 307 VDTENIKIVFNAVKNTI 323 (334)
Q Consensus 307 ~d~~nI~~vf~~v~~~I 323 (334)
+++++|+++++++.+.+
T Consensus 312 ktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 312 LTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcCHHHHHHHHHHHh
Confidence 99999999999998753
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.99 E-value=2.9e-09 Score=89.44 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=74.3
Q ss_pred EEEEEeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
.......+..+.+||++|+...+. .|..++++++++|+|+|.++..+ . ....+++. +..
T Consensus 37 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---------~--~~~~~~~~-~~~- 103 (157)
T cd01894 37 YGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT---------P--ADEEIAKY-LRK- 103 (157)
T ss_pred eEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC---------c--cHHHHHHH-HHh-
Confidence 334455678899999999988654 44567889999999999876411 1 11122222 221
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
.+.|+++++||+|+..... . . ..+..+. .-.++++||+++.|+.++
T Consensus 104 --~~~piiiv~nK~D~~~~~~--~----~---------------------~~~~~~~-----~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 104 --SKKPVILVVNKVDNIKEED--E----A---------------------AEFYSLG-----FGEPIPISAEHGRGIGDL 149 (157)
T ss_pred --cCCCEEEEEECcccCChHH--H----H---------------------HHHHhcC-----CCCeEEEecccCCCHHHH
Confidence 2489999999999865422 1 0 0011111 113679999999999999
Q ss_pred HHHHHHH
Q psy3651 316 FNAVKNT 322 (334)
Q Consensus 316 f~~v~~~ 322 (334)
|+++.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.98 E-value=2.3e-09 Score=95.84 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=75.3
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.+.+.|.....+++++|+|+|+++... .....+.+..+ .. ....|++|++||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~-------~~~t~~~l~~~---~~---~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP-------QPQTSEHLAAL---EI---MGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC-------CcchHHHHHHH---HH---cCCCcEEEEEEchhc
Confidence 678899999999988888888899999999999987310 01122233222 11 122479999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+. .+. ...+.+++.+.... ...+.++.+||++++||.++|+++.+.+
T Consensus 150 ~~~~------~~~--------------~~~~~i~~~~~~~~---~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 150 VKEE------QAL--------------ENYEQIKKFVKGTI---AENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred cCHH------HHH--------------HHHHHHHHHHhccc---cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6421 000 11112222222110 1245689999999999999999987644
No 168
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.97 E-value=2.4e-09 Score=103.81 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=75.7
Q ss_pred ecceeEEEEEe-eCcceeeeecCCccc---------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 159 TKGITEFTIVI-SNIPFLFVDVGGQRS---------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 159 T~Gi~~~~~~~-~~~~~~i~DvgGq~~---------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
|.......+.+ ++..+.+|||+|..+ +++.| ..+.++|++|+|+|.++. ... +.+..+
T Consensus 223 T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~----------~~~-~~~~~~ 290 (351)
T TIGR03156 223 TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDP----------DRE-EQIEAV 290 (351)
T ss_pred ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCC----------chH-HHHHHH
Confidence 44444555666 568999999999832 33322 247899999999999986 222 222223
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD 308 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d 308 (334)
..++..-...+.|+++|+||+|+....- +... . . ....++.+||++
T Consensus 291 ~~~L~~l~~~~~piIlV~NK~Dl~~~~~------v~~~----------------------~----~--~~~~~i~iSAkt 336 (351)
T TIGR03156 291 EKVLEELGAEDIPQLLVYNKIDLLDEPR------IERL----------------------E----E--GYPEAVFVSAKT 336 (351)
T ss_pred HHHHHHhccCCCCEEEEEEeecCCChHh------HHHH----------------------H----h--CCCCEEEEEccC
Confidence 3333322234689999999999854210 1000 0 0 112368899999
Q ss_pred CchHHHHHHHHHHH
Q psy3651 309 TENIKIVFNAVKNT 322 (334)
Q Consensus 309 ~~nI~~vf~~v~~~ 322 (334)
+.||+++++++.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988764
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.97 E-value=9.2e-09 Score=105.83 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=80.3
Q ss_pred EEEEEeeCc-ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 164 EFTIVISNI-PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 164 ~~~~~~~~~-~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
...+.+.+. .+.+|||+|++.+...|..++..+|++|+|+|.++- .+.++...+.... ..++|+
T Consensus 126 ~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg-----------v~~qT~e~i~~~~----~~~vPi 190 (587)
T TIGR00487 126 AYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG-----------VMPQTIEAISHAK----AANVPI 190 (587)
T ss_pred EEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC-----------CCHhHHHHHHHHH----HcCCCE
Confidence 344555444 899999999999999999999999999999998863 3334444333222 246899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
++++||+|+..... +.+...+... ++.. .-.....++.+||++|+||.++|+++..
T Consensus 191 IVviNKiDl~~~~~---------------------e~v~~~L~~~--g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 191 IVAINKIDKPEANP---------------------DRVKQELSEY--GLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEEECcccccCCH---------------------HHHHHHHHHh--hhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 99999999854211 1111111110 0000 0012356889999999999999998864
No 170
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.96 E-value=1.7e-09 Score=97.92 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=82.9
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.|..|.......+..++.++.+||++|++.+.+.|......++++|+|+|.++-+. +. ......+....+... .
T Consensus 60 ~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~~-~~~~~~~~~~~~~~~-~- 133 (219)
T cd01883 60 ERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---EA-GFEKGGQTREHALLA-R- 133 (219)
T ss_pred hCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---cc-ccccccchHHHHHHH-H-
Confidence 34556666677888899999999999999888888888889999999999998410 00 001111222222221 1
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.....|+++++||+|+..... .... .+...+-+...+..+. ...+.+.++.+||++|.||.
T Consensus 134 -~~~~~~iiivvNK~Dl~~~~~--~~~~--------------~~~i~~~l~~~l~~~~-~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 134 -TLGVKQLIVAVNKMDDVTVNW--SEER--------------YDEIKKELSPFLKKVG-YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred -HcCCCeEEEEEEccccccccc--cHHH--------------HHHHHHHHHHHHHHcC-CCcCCceEEEeecCcCCCCC
Confidence 123368999999999873200 0000 1112222332222221 11246889999999999986
No 171
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.95 E-value=4.3e-09 Score=111.04 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=82.5
Q ss_pred EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
...+.+.+..+.||||+|+..+...|..++..+|++|+|+|.++ ..+.++...+.... ..++|+|
T Consensus 329 a~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiI 393 (787)
T PRK05306 329 AYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPII 393 (787)
T ss_pred EEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEE
Confidence 34566667889999999999999999999999999999999987 23344444443322 2568999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
|++||+|+.......-...+..+ .++.. .....+.++.+||++|.||.++|+++..
T Consensus 394 VviNKiDl~~a~~e~V~~eL~~~---------------~~~~e-------~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 394 VAINKIDKPGANPDRVKQELSEY---------------GLVPE-------EWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEECccccccCHHHHHHHHHHh---------------cccHH-------HhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 99999998542110000111110 00000 0013467899999999999999998875
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.94 E-value=9.5e-09 Score=103.47 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=78.3
Q ss_pred EEEEEeeCcceeeeecCCcccccc--cc---------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRR--KW---------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~--kw---------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+.+++..+.+|||+|++...+ .+ ..++++++++|+|+|.++. .. .+.+.++..+.
T Consensus 251 ~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~----------~s-~~~~~~~~~~~ 319 (472)
T PRK03003 251 DSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEP----------IS-EQDQRVLSMVI 319 (472)
T ss_pred eEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CC-HHHHHHHHHHH
Confidence 345566778889999999854211 11 2356799999999999985 22 22334555554
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|+||++||+|+..+.. ...+. .-+.+. +.. .....+++|||+++.||
T Consensus 320 ~----~~~piIiV~NK~Dl~~~~~---~~~~~-----------------~~i~~~---l~~--~~~~~~~~~SAk~g~gv 370 (472)
T PRK03003 320 E----AGRALVLAFNKWDLVDEDR---RYYLE-----------------REIDRE---LAQ--VPWAPRVNISAKTGRAV 370 (472)
T ss_pred H----cCCCEEEEEECcccCChhH---HHHHH-----------------HHHHHh---ccc--CCCCCEEEEECCCCCCH
Confidence 3 4689999999999864211 00000 011111 110 12245789999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILHR 326 (334)
Q Consensus 313 ~~vf~~v~~~I~~~ 326 (334)
.++|..+.+.+-+.
T Consensus 371 ~~lf~~i~~~~~~~ 384 (472)
T PRK03003 371 DKLVPALETALESW 384 (472)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876543
No 173
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.94 E-value=1.9e-09 Score=89.99 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=62.3
Q ss_pred eeeecCCccc-----ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 175 LFVDVGGQRS-----QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 175 ~i~DvgGq~~-----~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+||++|+.. ++... ..+++++++|+|+|+++..+. .. ..+ .... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d~~~~~s~----------~~-~~~-~~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALI-VTAADADVIALVQSATDPESR----------FP-PGF-ASIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEecCCCCCcC----------CC-hhH-HHhc------cCCeEEEEEee
Confidence 6899999842 22222 247899999999999987432 11 112 1111 23999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
|+..... . .+.+.++++.. ....++++||+++.|++++|+++.
T Consensus 99 Dl~~~~~--~-----------------~~~~~~~~~~~---------~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 99 DLAEADV--D-----------------IERAKELLETA---------GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ccCCccc--C-----------------HHHHHHHHHHc---------CCCcEEEEecCCCCCHHHHHHHHh
Confidence 9864211 1 11122222211 112578999999999999999874
No 174
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.94 E-value=1.4e-08 Score=93.25 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=97.3
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.|..|+......+..++.++.+|||+|+..+...|..+++.++++|+|+|.++- .......+++.+..
T Consensus 46 ~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-----------~~~~~~~~~~~~~~ 114 (237)
T cd04168 46 RQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-----------VQAQTRILWRLLRK 114 (237)
T ss_pred hhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 3455566666777888899999999999999999999999999999999999873 12233444544332
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhh---------CCCCCCC-------Cc-cHHHHH---HHHHHHHHhhcc
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEH---------FPEFEGD-------PQ-DMQAVQ---TFLLNYFKAVKR 293 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~---------Fp~y~g~-------~~-~~~~~~---~fi~~~F~~l~~ 293 (334)
.+.|+++|+||+|+......+.-..+.+. .|.+... +. -.+.+. +-+.++|.+-..
T Consensus 115 ----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~ 190 (237)
T cd04168 115 ----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGP 190 (237)
T ss_pred ----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCC
Confidence 36899999999998742210011122222 2322110 00 011111 223333332110
Q ss_pred --------------CCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 294 --------------DEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 294 --------------~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
...+-++++..||..+.||+.+++.+.+.
T Consensus 191 ~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 191 IEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 11345678889999999999999988764
No 175
>KOG3883|consensus
Probab=98.92 E-value=5.8e-09 Score=87.95 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=98.5
Q ss_pred CCCCCCcccccceeeeec-ceeEEEEEeeCcceeeeecCCcccc-cccccccccCCCeEEEEEeCCCccchhhccccccc
Q psy3651 143 QDYIPSNKDILHARKATK-GITEFTIVISNIPFLFVDVGGQRSQ-RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNR 220 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~-Gi~~~~~~~~~~~~~i~DvgGq~~~-r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nr 220 (334)
.+|.||.+|+..+...|- |.- -.++++||+|-... ..+-.|||+-+|+.++|+|..++ .+
T Consensus 38 ~e~~pTiEDiY~~svet~rgar--------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~----------eS 99 (198)
T KOG3883|consen 38 TELHPTIEDIYVASVETDRGAR--------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDP----------ES 99 (198)
T ss_pred CccccchhhheeEeeecCCChh--------heEEEeecccccCchhhhhHhHhccCceEEEEecCCCH----------HH
Confidence 579999999976655442 222 35889999998877 67888999999999999999998 44
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeE
Q psy3651 221 LHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLF 300 (334)
Q Consensus 221 l~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~ 300 (334)
|+..-.+-..|-.+..-+.+||++++||.|+.+.+- ...++.+ .+ ++...+.
T Consensus 100 f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~--vd~d~A~----------------~W----------a~rEkvk 151 (198)
T KOG3883|consen 100 FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE--VDMDVAQ----------------IW----------AKREKVK 151 (198)
T ss_pred HHHHHHHHHHHhhccccccccEEEEechhhcccchh--cCHHHHH----------------HH----------Hhhhhee
Confidence 444333334444456667899999999999865432 2222222 11 1234578
Q ss_pred EEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 301 HHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 301 ~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
.++++|+|...+-+-|..+...+.+
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhccC
Confidence 8999999999999999988876654
No 176
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.91 E-value=6.5e-09 Score=107.14 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=94.8
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.|..|+......+.+++.++.+|||+|+..+...|..+++.+|++|+|+|.++ ..+.....+|..+..
T Consensus 46 rerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~ 114 (594)
T TIGR01394 46 RERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE 114 (594)
T ss_pred HhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH
Confidence 345556666667788899999999999999999999999999999999999987 234555666666654
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCc--
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTE-- 310 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~-- 310 (334)
.+.|+|+|+||+|+..++. . .+.+-+.+.|..+... ....+++.++||+++.
T Consensus 115 ----~~ip~IVviNKiD~~~a~~--~-------------------~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~ 169 (594)
T TIGR01394 115 ----LGLKPIVVINKIDRPSARP--D-------------------EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS 169 (594)
T ss_pred ----CCCCEEEEEECCCCCCcCH--H-------------------HHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence 4579999999999865432 1 1111222222222211 1234678899999985
Q ss_pred --------hHHHHHHHHHHHH
Q psy3651 311 --------NIKIVFNAVKNTI 323 (334)
Q Consensus 311 --------nI~~vf~~v~~~I 323 (334)
++..+|+.+.+.+
T Consensus 170 ~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 170 LDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ccCcccccCHHHHHHHHHHhC
Confidence 7888888877755
No 177
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.91 E-value=4.7e-09 Score=108.38 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=77.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
++.+++|||+|+..+...|..+++.++++|+|+|.++-.+ .+....|..... .+.|+++|+||+|
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-----------~qt~~~~~~~~~----~~lpiIvViNKiD 137 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLALE----NDLEIIPVLNKID 137 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CCCCEEEEEECCC
Confidence 5789999999999999999999999999999999998421 122223333322 3679999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+..+.. . ...+-+.+. .++ ....++.+||+++.||.++++++.+.+.
T Consensus 138 l~~a~~--~-------------------~v~~ei~~~-lg~-----~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 138 LPAADP--E-------------------RVKQEIEDV-IGI-----DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcccH--H-------------------HHHHHHHHH-hCC-----CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 854321 0 000011111 111 1123789999999999999999987664
No 178
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.90 E-value=5.3e-09 Score=105.28 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred EEEEEeeCcceeeeecCCccc--------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 164 EFTIVISNIPFLFVDVGGQRS--------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~--------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
...+...+..+.+|||||+.. .+..|..++.++++||||+|.++... .... .++. .+..
T Consensus 78 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s--------~~~~---~i~~-~l~~- 144 (472)
T PRK03003 78 SYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT--------ATDE---AVAR-VLRR- 144 (472)
T ss_pred EEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC--------HHHH---HHHH-HHHH-
Confidence 344556778899999999873 34456778999999999999998511 1111 2222 2221
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
.+.|++||+||+|+..... ...+ +..+ ... ..++|||++|.||.++
T Consensus 145 --~~~piilV~NK~Dl~~~~~-----~~~~----------------------~~~~----g~~-~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 145 --SGKPVILAANKVDDERGEA-----DAAA----------------------LWSL----GLG-EPHPVSALHGRGVGDL 190 (472)
T ss_pred --cCCCEEEEEECccCCccch-----hhHH----------------------HHhc----CCC-CeEEEEcCCCCCcHHH
Confidence 4689999999999853211 0011 0111 111 1368999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 316 FNAVKNTILH 325 (334)
Q Consensus 316 f~~v~~~I~~ 325 (334)
|+++.+.+.+
T Consensus 191 ~~~i~~~l~~ 200 (472)
T PRK03003 191 LDAVLAALPE 200 (472)
T ss_pred HHHHHhhccc
Confidence 9999987754
No 179
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.90 E-value=1.9e-08 Score=91.98 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=88.5
Q ss_pred CCCCCCcccccceeeeecceeEEEEEe-eCcceeeeecCCcccccc-----cccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVI-SNIPFLFVDVGGQRSQRR-----KWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~-----kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
.+|.|.+. .--.+|+.+....+.+ +.+.+++||.|||..+-. .....|++|.++|||+|+.+.
T Consensus 21 ~~~~p~dT---~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~-------- 89 (232)
T PF04670_consen 21 HKYSPRDT---LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD-------- 89 (232)
T ss_dssp S---GGGG---GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S--------
T ss_pred cCCCchhc---cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc--------
Confidence 78888653 2235788888777764 568999999999986543 356789999999999999953
Q ss_pred ccccHHHHHHHHHHHHhh--cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651 217 RTNRLHESRNIFDTIINN--VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD 294 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~--~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~ 294 (334)
...+++..|...+.. ...+++.+.+|.+|+|+..+.- +. ++...+.++..+....
T Consensus 90 ---~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~--r~------------------~~~~~~~~~i~~~~~~ 146 (232)
T PF04670_consen 90 ---DYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE--RE------------------EIFRDIQQRIRDELED 146 (232)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH--HH------------------HHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH--HH------------------HHHHHHHHHHHHHhhh
Confidence 345556666555443 2347889999999999875422 11 1112222222222111
Q ss_pred CC-CCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 295 EK-KPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 295 ~~-~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
.. ..+.+|.||.-| ..+.++|..|...++.
T Consensus 147 ~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 147 LGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred ccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 11 258899999999 5888888888776653
No 180
>PRK10218 GTP-binding protein; Provisional
Probab=98.90 E-value=1.4e-08 Score=104.85 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=88.3
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
-|+......+..++.++.+||++|+..+...|..+++.++++|+|+|.++- .......++.....
T Consensus 54 iTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-----------~~~qt~~~l~~a~~---- 118 (607)
T PRK10218 54 ITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-----------PMPQTRFVTKKAFA---- 118 (607)
T ss_pred eEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-----------ccHHHHHHHHHHHH----
Confidence 344444556677889999999999999999999999999999999999873 23344444444433
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCc------
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTE------ 310 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~------ 310 (334)
.+.|+++|+||+|+..... . .+.+-+...|..+... ....++++.+||.+|.
T Consensus 119 ~gip~IVviNKiD~~~a~~---~------------------~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~ 177 (607)
T PRK10218 119 YGLKPIVVINKVDRPGARP---D------------------WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE 177 (607)
T ss_pred cCCCEEEEEECcCCCCCch---h------------------HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcc
Confidence 4678999999999865432 1 1111222233222211 1245778999999997
Q ss_pred ----hHHHHHHHHHHHH
Q psy3651 311 ----NIKIVFNAVKNTI 323 (334)
Q Consensus 311 ----nI~~vf~~v~~~I 323 (334)
++..+|+.+.+.+
T Consensus 178 ~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 178 DMAEDMTPLYQAIVDHV 194 (607)
T ss_pred ccccchHHHHHHHHHhC
Confidence 4777777666544
No 181
>PRK15494 era GTPase Era; Provisional
Probab=98.89 E-value=1.5e-08 Score=97.83 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=73.3
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccc-cccc-------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQ-RRKW-------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~-r~kw-------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|.+.....+..++..+.+|||+|+... ...- ..++.++|++|||+|.++. ..... ..++..
T Consensus 87 Tr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s---------~~~~~--~~il~~ 155 (339)
T PRK15494 87 TRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS---------FDDIT--HNILDK 155 (339)
T ss_pred ccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC---------CCHHH--HHHHHH
Confidence 334444455667888999999999532 2111 1246899999999997652 01111 123333
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.. .+.|.+|++||+|+..+.+ .++ .+++... .....++.+||+++.
T Consensus 156 l~~----~~~p~IlViNKiDl~~~~~----~~~-----------------~~~l~~~--------~~~~~i~~iSAktg~ 202 (339)
T PRK15494 156 LRS----LNIVPIFLLNKIDIESKYL----NDI-----------------KAFLTEN--------HPDSLLFPISALSGK 202 (339)
T ss_pred HHh----cCCCEEEEEEhhcCccccH----HHH-----------------HHHHHhc--------CCCcEEEEEeccCcc
Confidence 322 2457788999999853211 111 1121111 112458899999999
Q ss_pred hHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTI 323 (334)
Q Consensus 311 nI~~vf~~v~~~I 323 (334)
|++++|+++.+.+
T Consensus 203 gv~eL~~~L~~~l 215 (339)
T PRK15494 203 NIDGLLEYITSKA 215 (339)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999987643
No 182
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.89 E-value=4.7e-08 Score=83.08 Aligned_cols=120 Identities=13% Similarity=0.276 Sum_probs=75.1
Q ss_pred EEEEEeeCcceeeeecCCcccccc-----------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRR-----------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~-----------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+..++..+.+||++|+..... ....++.+++++|+|+|.++.. . .+...+...+.
T Consensus 42 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~-~~~~~~~~~~~ 110 (174)
T cd01895 42 DVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI----------T-EQDLRIAGLIL 110 (174)
T ss_pred eeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc----------c-hhHHHHHHHHH
Confidence 344555677889999999864311 1123567999999999998751 1 22233333333
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|+++++||+|+....- .. .+.+.+.+.+.+.. .....++.+||+++.|+
T Consensus 111 ~----~~~~~iiv~nK~Dl~~~~~----~~--------------~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 111 E----EGKALVIVVNKWDLVEKDS----KT--------------MKEFKKEIRRKLPF-----LDYAPIVFISALTGQGV 163 (174)
T ss_pred h----cCCCEEEEEeccccCCccH----HH--------------HHHHHHHHHhhccc-----ccCCceEEEeccCCCCH
Confidence 2 3579999999999865421 01 11112222222110 12356899999999999
Q ss_pred HHHHHHHHH
Q psy3651 313 KIVFNAVKN 321 (334)
Q Consensus 313 ~~vf~~v~~ 321 (334)
.++++++..
T Consensus 164 ~~~~~~l~~ 172 (174)
T cd01895 164 DKLFDAIDE 172 (174)
T ss_pred HHHHHHHHH
Confidence 999998875
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.88 E-value=1.7e-08 Score=103.99 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+.+....+...+..+.+||++|++.+.+.+..++.++|++|+|+|.++- .+.++.+.+. ++.. .
T Consensus 37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-----------~~~qT~ehl~-il~~---l 101 (581)
T TIGR00475 37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-----------VMTQTGEHLA-VLDL---L 101 (581)
T ss_pred eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CcHHHHHHHH-HHHH---c
Confidence 44444556677778999999999999999999999999999999999873 2222222222 2221 3
Q ss_pred CCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 239 NVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 239 ~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
++| +++++||+|+..+.. +.. ..+.+.+++.. ... ...+.++.+||++++||.+++.
T Consensus 102 gi~~iIVVlNK~Dlv~~~~------~~~----------~~~ei~~~l~~----~~~--~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEE------IKR----------TEMFMKQILNS----YIF--LKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred CCCeEEEEEECCCCCCHHH------HHH----------HHHHHHHHHHH----hCC--CCCCcEEEEeCCCCCCchhHHH
Confidence 566 999999999864321 000 00111112211 110 1246789999999999999999
Q ss_pred HHHHHHH
Q psy3651 318 AVKNTIL 324 (334)
Q Consensus 318 ~v~~~I~ 324 (334)
++.+.+-
T Consensus 160 ~L~~l~~ 166 (581)
T TIGR00475 160 ELKNLLE 166 (581)
T ss_pred HHHHHHH
Confidence 8876553
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.88 E-value=8.4e-09 Score=108.07 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=78.2
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+|||+|++.+.+.|..++..+|++|+|+|.++- ...++...+..+. ..+.|+||++||+|
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD 358 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID 358 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence 48899999999999999999999999999999998873 2223333333332 24689999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+..... ..+.. .+... ..+.......+.++.+||++|.||.++|+++...
T Consensus 359 l~~~~~----e~v~~-----------------eL~~~-~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 359 KANANT----ERIKQ-----------------QLAKY-NLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ccccCH----HHHHH-----------------HHHHh-ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 865321 11111 01000 0000001134678999999999999999988764
No 185
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.88 E-value=1.7e-08 Score=100.68 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=77.3
Q ss_pred eeEEEEEeeCcceeeeecCCcccccccc--------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 162 ITEFTIVISNIPFLFVDVGGQRSQRRKW--------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgGq~~~r~kw--------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.+..+.+++..+++|||+|++.....+ ..++++++++|+|+|.++. ....+. ++..+..
T Consensus 241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~----------~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP----------LTKDDF--LIIDLNK 308 (442)
T ss_pred EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CChhHH--HHHHHhh
Confidence 3355667788889999999998654433 3578999999999999985 222222 4444322
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.+.|+++|+||+|+.... ...+ . +.....++.+||++ .||.
T Consensus 309 ----~~~piIlV~NK~Dl~~~~-------~~~~----------------------~-----~~~~~~~~~vSak~-~gI~ 349 (442)
T TIGR00450 309 ----SKKPFILVLNKIDLKINS-------LEFF----------------------V-----SSKVLNSSNLSAKQ-LKIK 349 (442)
T ss_pred ----CCCCEEEEEECccCCCcc-------hhhh----------------------h-----hhcCCceEEEEEec-CCHH
Confidence 467999999999984321 1110 0 01123467899997 6999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILHR 326 (334)
Q Consensus 314 ~vf~~v~~~I~~~ 326 (334)
++|+.+.+.+.+.
T Consensus 350 ~~~~~L~~~i~~~ 362 (442)
T TIGR00450 350 ALVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877653
No 186
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.86 E-value=4e-09 Score=85.34 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=57.7
Q ss_pred cceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc-CCC
Q psy3651 160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV-IFR 238 (334)
Q Consensus 160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~-~~~ 238 (334)
++............+.+||++|+......|...+.+++++|+|+|+++. ..+.+...++..+.+.. ...
T Consensus 38 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~----------~s~~~~~~~~~~l~~~~~~~~ 107 (119)
T PF08477_consen 38 IGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDP----------ESLEYLSQLLKWLKNIRKRDK 107 (119)
T ss_dssp EEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGH----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCCh----------HHHHHHHHHHHHHHHHHccCC
Confidence 3333333333444599999999998888888889999999999999997 55666544433333221 246
Q ss_pred CCcEEEEEeCCC
Q psy3651 239 NVSFILFLNKTD 250 (334)
Q Consensus 239 ~~piiL~lNK~D 250 (334)
++|++|++||.|
T Consensus 108 ~~piilv~nK~D 119 (119)
T PF08477_consen 108 NIPIILVGNKSD 119 (119)
T ss_dssp CSEEEEEEE-TC
T ss_pred CCCEEEEEeccC
Confidence 699999999998
No 187
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.86 E-value=1.2e-08 Score=102.08 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=79.8
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|..+....+.+++.++.+|||+|++.... .-..++.+++++|+|+|.++. .... ...++..
T Consensus 250 T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~----------~s~~-~~~~l~~ 318 (449)
T PRK05291 250 TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP----------LTEE-DDEILEE 318 (449)
T ss_pred ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC----------CChh-HHHHHHh
Confidence 33444566777888999999999975332 123468899999999999986 2222 2333333
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
..+.|+++|+||+|+..+.- . . . .....++.+||+++.
T Consensus 319 ------~~~~piiiV~NK~DL~~~~~---~-~--~------------------------------~~~~~~i~iSAktg~ 356 (449)
T PRK05291 319 ------LKDKPVIVVLNKADLTGEID---L-E--E------------------------------ENGKPVIRISAKTGE 356 (449)
T ss_pred ------cCCCCcEEEEEhhhccccch---h-h--h------------------------------ccCCceEEEEeeCCC
Confidence 35689999999999854321 0 0 0 112347889999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTILH 325 (334)
Q Consensus 311 nI~~vf~~v~~~I~~ 325 (334)
||+++++++.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987753
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.84 E-value=1.2e-08 Score=105.28 Aligned_cols=118 Identities=17% Similarity=0.111 Sum_probs=80.4
Q ss_pred cceeEEEEEeeCcceeeeecCCccccccc------ccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 160 KGITEFTIVISNIPFLFVDVGGQRSQRRK------WFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~k------w~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
+......+++++.++++||++|+.+.... +..|+ ++++++++|+|.++. .+ .+.+..++
T Consensus 29 v~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l----------er---~l~l~~ql 95 (591)
T TIGR00437 29 VEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL----------ER---NLYLTLQL 95 (591)
T ss_pred EEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc----------hh---hHHHHHHH
Confidence 33444566677888999999999987654 45554 379999999999885 22 23444444
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
.. .+.|+++++||+|+.+++- ...+.. -+.+ ..++.++.|||++++|
T Consensus 96 ~~----~~~PiIIVlNK~Dl~~~~~--i~~d~~------------------~L~~---------~lg~pvv~tSA~tg~G 142 (591)
T TIGR00437 96 LE----LGIPMILALNLVDEAEKKG--IRIDEE------------------KLEE---------RLGVPVVPTSATEGRG 142 (591)
T ss_pred Hh----cCCCEEEEEehhHHHHhCC--ChhhHH------------------HHHH---------HcCCCEEEEECCCCCC
Confidence 43 3689999999999865421 010000 0111 1235689999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTI 323 (334)
Q Consensus 312 I~~vf~~v~~~I 323 (334)
++++|+++.+..
T Consensus 143 i~eL~~~i~~~~ 154 (591)
T TIGR00437 143 IERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 189
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.83 E-value=1.2e-08 Score=102.61 Aligned_cols=135 Identities=12% Similarity=0.119 Sum_probs=82.0
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccc----c---ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQ----R---RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~----r---~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
|+..+...+.+++..|.+|||+|.... + ..+..+++.++++|+|+|+++.+.. .+....+......+...
T Consensus 193 Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 193 TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAY 269 (500)
T ss_pred cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHh
Confidence 444455556677889999999996421 1 1233456789999999999874100 00011222222222222
Q ss_pred Hhh-------cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEE
Q psy3651 232 INN-------VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFT 304 (334)
Q Consensus 232 ~~~-------~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~t 304 (334)
... ..+.+.|+||++||+|+...+- +.+ .+...+. ...+.++.+
T Consensus 270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------l~e-----------------~l~~~l~------~~g~~Vf~I 320 (500)
T PRK12296 270 APALDGDLGLGDLAERPRLVVLNKIDVPDARE------LAE-----------------FVRPELE------ARGWPVFEV 320 (500)
T ss_pred hhcccccchhhhhcCCCEEEEEECccchhhHH------HHH-----------------HHHHHHH------HcCCeEEEE
Confidence 211 0245789999999999865321 111 1111111 124678999
Q ss_pred eeecCchHHHHHHHHHHHHHH
Q psy3651 305 TAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 305 sA~d~~nI~~vf~~v~~~I~~ 325 (334)
||++++|+++++.++.+.+-.
T Consensus 321 SA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 321 SAASREGLRELSFALAELVEE 341 (500)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 190
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.83 E-value=3.5e-08 Score=82.69 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=73.7
Q ss_pred EEEEeeCcceeeeecCCccccccc--------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 165 FTIVISNIPFLFVDVGGQRSQRRK--------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 165 ~~~~~~~~~~~i~DvgGq~~~r~k--------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..+...+.++.+||++|....... -..++..++++++|+|+++. ....+. ..+..
T Consensus 42 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~-~~~~~------ 104 (157)
T cd04164 42 ESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG----------LDEEDL-EILEL------ 104 (157)
T ss_pred EEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CCHHHH-HHHHh------
Confidence 345556778999999998654321 12456799999999999985 222222 22222
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|+++++||+|+..... . . .......++.+||+++.|+.+++
T Consensus 105 ~~~~~vi~v~nK~D~~~~~~--~-----~----------------------------~~~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 105 PADKPIIVVLNKSDLLPDSE--L-----L----------------------------SLLAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred hcCCCEEEEEEchhcCCccc--c-----c----------------------------cccCCCceEEEECCCCCCHHHHH
Confidence 35689999999999866432 1 0 01234568899999999999999
Q ss_pred HHHHHHH
Q psy3651 317 NAVKNTI 323 (334)
Q Consensus 317 ~~v~~~I 323 (334)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (157)
T cd04164 150 EALLELA 156 (157)
T ss_pred HHHHHhh
Confidence 9988753
No 191
>PRK11058 GTPase HflX; Provisional
Probab=98.82 E-value=2.6e-08 Score=98.90 Aligned_cols=120 Identities=19% Similarity=0.314 Sum_probs=75.2
Q ss_pred eEEEEEeeCc-ceeeeecCCcccc--cccc------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 163 TEFTIVISNI-PFLFVDVGGQRSQ--RRKW------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 163 ~~~~~~~~~~-~~~i~DvgGq~~~--r~kw------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
....+.+.+. .+.+|||+|..+. ...| ...+.+++++|+|+|.|+. ...+.+..+..++.
T Consensus 235 ~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~-----------~~~e~l~~v~~iL~ 303 (426)
T PRK11058 235 TLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADV-----------RVQENIEAVNTVLE 303 (426)
T ss_pred ceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCc-----------cHHHHHHHHHHHHH
Confidence 3345555553 7889999998442 2233 3346899999999999985 22333333333333
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.-...+.|+++++||+|+..... . .+.. .. . ... .++.+||++|.||.
T Consensus 304 el~~~~~pvIiV~NKiDL~~~~~--~--~~~~-----------------------~~---~-~~~-~~v~ISAktG~GId 351 (426)
T PRK11058 304 EIDAHEIPTLLVMNKIDMLDDFE--P--RIDR-----------------------DE---E-NKP-IRVWLSAQTGAGIP 351 (426)
T ss_pred HhccCCCCEEEEEEcccCCCchh--H--HHHH-----------------------Hh---c-CCC-ceEEEeCCCCCCHH
Confidence 22224689999999999854211 0 0000 00 0 111 14679999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILH 325 (334)
Q Consensus 314 ~vf~~v~~~I~~ 325 (334)
++++++.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988753
No 192
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.80 E-value=3e-08 Score=101.96 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=77.4
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
.+.+|||+||+.++..|..+++.++++|+|+|+++-.+ ....+++.++. . .+.|++|++||+|+.
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~--------~qt~e~i~~l~---~----~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK--------PQTQEALNILR---M----YKTPFVVAANKIDRI 134 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC--------HhHHHHHHHHH---H----cCCCEEEEEECCCcc
Confidence 48899999999999999999999999999999987310 11123333322 1 368999999999986
Q ss_pred hhhhccccchhhhhCCCCCCCCc----cHHHHHHHHHHHHHhh--c-------cCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQ----DMQAVQTFLLNYFKAV--K-------RDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~----~~~~~~~fi~~~F~~l--~-------~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
...-.....++.+. +.-.+. +.+.....+...+... . ..-...+.+..+||++|+|+.++..++
T Consensus 135 ~~~~~~~~~~f~e~---sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l 211 (590)
T TIGR00491 135 PGWRSHEGRPFMES---FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTML 211 (590)
T ss_pred chhhhccCchHHHH---HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHH
Confidence 42110011111110 000000 0000001111111111 0 011245789999999999999999988
Q ss_pred HHH
Q psy3651 320 KNT 322 (334)
Q Consensus 320 ~~~ 322 (334)
...
T Consensus 212 ~~l 214 (590)
T TIGR00491 212 AGL 214 (590)
T ss_pred HHH
Confidence 653
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.79 E-value=1.8e-08 Score=100.20 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=78.2
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+.+....+..++..+.+||++|++.+.+....++.+++++|+|+|.++-+.. ......+.+ .++..
T Consensus 69 rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~----~~~~~- 138 (426)
T TIGR00483 69 RGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHA----FLART- 138 (426)
T ss_pred cCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHH----HHHHH-
Confidence 34455555667777889999999999988766566667899999999999985210 001111111 11211
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
....|++|++||+|+... ....+.. ..+++.++++ ... .....+.++.+||+++.||.+.
T Consensus 139 -~~~~~iIVviNK~Dl~~~----~~~~~~~----------~~~ei~~~~~----~~g-~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 139 -LGINQLIVAINKMDSVNY----DEEEFEA----------IKKEVSNLIK----KVG-YNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred -cCCCeEEEEEEChhccCc----cHHHHHH----------HHHHHHHHHH----HcC-CCcccceEEEeecccccccccc
Confidence 233589999999998531 0101110 0111122221 111 1123578899999999999874
Q ss_pred H
Q psy3651 316 F 316 (334)
Q Consensus 316 f 316 (334)
+
T Consensus 199 ~ 199 (426)
T TIGR00483 199 S 199 (426)
T ss_pred c
Confidence 4
No 194
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=4.4e-08 Score=97.03 Aligned_cols=121 Identities=14% Similarity=0.202 Sum_probs=75.6
Q ss_pred EEEee-CcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh-hcC
Q psy3651 166 TIVIS-NIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN-NVI 236 (334)
Q Consensus 166 ~~~~~-~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~-~~~ 236 (334)
.+.+. +..+.+||++|..... ..|..+.+.++++|+|+|+++.+. .+.+.+...+.+++.. ++.
T Consensus 199 ~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~-------~dp~e~~~~i~~EL~~y~~~ 271 (424)
T PRK12297 199 VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG-------RDPIEDYEKINKELKLYNPR 271 (424)
T ss_pred EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc-------CChHHHHHHHHHHHhhhchh
Confidence 34445 6889999999975311 223344567999999999987521 0222332333333332 233
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
+.+.|++|++||+||.... ..+.. + .+. + ...++.+||++++|+++++
T Consensus 272 L~~kP~IVV~NK~DL~~~~-----e~l~~-----------------l-~~~---l------~~~i~~iSA~tgeGI~eL~ 319 (424)
T PRK12297 272 LLERPQIVVANKMDLPEAE-----ENLEE-----------------F-KEK---L------GPKVFPISALTGQGLDELL 319 (424)
T ss_pred ccCCcEEEEEeCCCCcCCH-----HHHHH-----------------H-HHH---h------CCcEEEEeCCCCCCHHHHH
Confidence 4578999999999973211 01111 1 111 1 1457899999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
+++.+.+.+
T Consensus 320 ~~L~~~l~~ 328 (424)
T PRK12297 320 YAVAELLEE 328 (424)
T ss_pred HHHHHHHHh
Confidence 999887654
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.79 E-value=6.1e-08 Score=80.28 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=77.4
Q ss_pred eEEEEEee-CcceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 163 TEFTIVIS-NIPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 163 ~~~~~~~~-~~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
....+... +..+.+||++|+..... .+..++.++++++||+|.++.. ...... ++....
T Consensus 35 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~----------~~~~~~-~~~~~~-- 101 (163)
T cd00880 35 VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA----------DEEEEK-LLELLR-- 101 (163)
T ss_pred eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC----------CHHHHH-HHHHHH--
Confidence 33344443 67899999999887653 3445789999999999999962 222221 222222
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
..+.|+++++||.|+....- +.. .+. .............++.+||.++.|+.+
T Consensus 102 --~~~~~~ivv~nK~D~~~~~~------~~~-----------------~~~--~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 102 --ERGKPVLLVLNKIDLLPEEE------EEE-----------------LLE--LRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred --hcCCeEEEEEEccccCChhh------HHH-----------------HHH--HHHhhcccccCCceEEEeeeccCCHHH
Confidence 25789999999999865311 111 000 000111112456789999999999999
Q ss_pred HHHHHHHH
Q psy3651 315 VFNAVKNT 322 (334)
Q Consensus 315 vf~~v~~~ 322 (334)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99988764
No 196
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.77 E-value=3.3e-08 Score=85.00 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=69.0
Q ss_pred eeecCCcccccccccc----cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 176 FVDVGGQRSQRRKWFQ----CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 176 i~DvgGq~~~r~kw~~----~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+||++|+...+..|.. .+.+++++|+|+|.++.++. +.. ++..+ ..+.|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~---------~~~---~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR---------LPA---GLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc---------cCH---HHHhc-----cCCCCeEEEEEcccc
Confidence 7999999655555543 36899999999999986322 111 11111 135799999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
..... +.+.+++.+. .-..++++|||++++||.++|+.+.+.+.+.
T Consensus 104 ~~~~~---------------------~~~~~~~~~~--------~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 104 PDADV---------------------AATRKLLLET--------GFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred CcccH---------------------HHHHHHHHHc--------CCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 43211 1111122211 1124689999999999999999998876543
No 197
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.73 E-value=1.7e-07 Score=93.21 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=79.7
Q ss_pred EEEEeeCcceeeeecCCcccccccc-----------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 165 FTIVISNIPFLFVDVGGQRSQRRKW-----------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 165 ~~~~~~~~~~~i~DvgGq~~~r~kw-----------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
..+..++..+.+|||+|.+...+.+ ..+++.+|++|+|+|.++. -......++..+..
T Consensus 214 ~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~-----------~~~~~~~i~~~~~~ 282 (435)
T PRK00093 214 TPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG-----------ITEQDLRIAGLALE 282 (435)
T ss_pred EEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 3445577889999999987654432 2356789999999999874 12223344444433
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.+.|+++++||+|+..+.. . +...+.+...+.. ...++++++||+++.||.
T Consensus 283 ----~~~~~ivv~NK~Dl~~~~~---~-----------------~~~~~~~~~~l~~-----~~~~~i~~~SA~~~~gv~ 333 (435)
T PRK00093 283 ----AGRALVIVVNKWDLVDEKT---M-----------------EEFKKELRRRLPF-----LDYAPIVFISALTGQGVD 333 (435)
T ss_pred ----cCCcEEEEEECccCCCHHH---H-----------------HHHHHHHHHhccc-----ccCCCEEEEeCCCCCCHH
Confidence 4579999999999864321 0 1111223322211 134678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILH 325 (334)
Q Consensus 314 ~vf~~v~~~I~~ 325 (334)
++|+.+.+....
T Consensus 334 ~l~~~i~~~~~~ 345 (435)
T PRK00093 334 KLLEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHHHH
Confidence 999998875543
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.72 E-value=6.1e-08 Score=96.36 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=72.7
Q ss_pred EEEEEeeCcceeeeecCCccc--------ccccccccccCCCeEEEEEeCCCccchhhcccccccHH-HHHHHHHHHHhh
Q psy3651 164 EFTIVISNIPFLFVDVGGQRS--------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH-ESRNIFDTIINN 234 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~--------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~-esl~lf~~i~~~ 234 (334)
...+.+.+..+.+|||+|+.. .+..+..++.++|++|||+|.++.. .... +...++..
T Consensus 41 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~---------~~~~~~~~~~l~~---- 107 (435)
T PRK00093 41 YGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL---------TPADEEIAKILRK---- 107 (435)
T ss_pred EEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHHHHHHHHHH----
Confidence 445566778999999999987 3444567789999999999998731 1111 11222221
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~ 313 (334)
.+.|++|++||+|+.... ..+.+ + ..+ .+ .++.+||+++.||.
T Consensus 108 ---~~~piilv~NK~D~~~~~-----~~~~~-----------------~-----~~l------g~~~~~~iSa~~g~gv~ 151 (435)
T PRK00093 108 ---SNKPVILVVNKVDGPDEE-----ADAYE-----------------F-----YSL------GLGEPYPISAEHGRGIG 151 (435)
T ss_pred ---cCCcEEEEEECccCccch-----hhHHH-----------------H-----Hhc------CCCCCEEEEeeCCCCHH
Confidence 268999999999964311 01111 1 111 11 25789999999999
Q ss_pred HHHHHHHH
Q psy3651 314 IVFNAVKN 321 (334)
Q Consensus 314 ~vf~~v~~ 321 (334)
++|+++..
T Consensus 152 ~l~~~I~~ 159 (435)
T PRK00093 152 DLLDAILE 159 (435)
T ss_pred HHHHHHHh
Confidence 99998876
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.72 E-value=1e-07 Score=100.51 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=79.4
Q ss_pred EEEEEeeCcceeeeecCCccc-ccccc----------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRS-QRRKW----------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~-~r~kw----------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+.+++..+.+|||+|++. .+..| ..+++.++++|+|+|.++. .. .+.+.++..+.
T Consensus 490 ~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~----------~s-~~~~~i~~~~~ 558 (712)
T PRK09518 490 DEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQP----------IS-EQDLKVMSMAV 558 (712)
T ss_pred eeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCC----------CC-HHHHHHHHHHH
Confidence 345566788899999999763 23333 2346789999999999985 22 22344555554
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|++||+||+|+..+.. ...+. +.+...|.. ......+++||+++.||
T Consensus 559 ~----~~~piIiV~NK~DL~~~~~---~~~~~-----------------~~~~~~l~~-----~~~~~ii~iSAktg~gv 609 (712)
T PRK09518 559 D----AGRALVLVFNKWDLMDEFR---RQRLE-----------------RLWKTEFDR-----VTWARRVNLSAKTGWHT 609 (712)
T ss_pred H----cCCCEEEEEEchhcCChhH---HHHHH-----------------HHHHHhccC-----CCCCCEEEEECCCCCCH
Confidence 3 4689999999999864311 00111 111111111 12245688999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILH 325 (334)
Q Consensus 313 ~~vf~~v~~~I~~ 325 (334)
.++|+.+.+...+
T Consensus 610 ~~L~~~i~~~~~~ 622 (712)
T PRK09518 610 NRLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887765
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.72 E-value=5.9e-08 Score=87.11 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=58.0
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+.-|+......+..++.++.+|||+|++.+...+...+..++++|+|+|.++- ...+....+. ++..
T Consensus 61 rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~-----------~~~~~~~~~~-~~~~- 127 (208)
T cd04166 61 QGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG-----------VLEQTRRHSY-ILSL- 127 (208)
T ss_pred CCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC-----------ccHhHHHHHH-HHHH-
Confidence 44455555667777889999999999988777778888999999999999873 1112222222 1221
Q ss_pred CCCCCcEEEEEeCCCcch
Q psy3651 236 IFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~ 253 (334)
....++|+++||+|+..
T Consensus 128 -~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 128 -LGIRHVVVAVNKMDLVD 144 (208)
T ss_pred -cCCCcEEEEEEchhccc
Confidence 12245888999999853
No 201
>PRK13351 elongation factor G; Reviewed
Probab=98.72 E-value=7.5e-08 Score=101.26 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
.+|.|.+ +.+..|++.....+..++..+.+|||+|+..+...|..+++.++++|+|+|.++-. . .
T Consensus 48 ~d~~~~e----~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~----------~-~ 112 (687)
T PRK13351 48 TDWMPQE----QERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV----------Q-P 112 (687)
T ss_pred CCCCHHH----HhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC----------C-H
Confidence 4555533 45677888777888888999999999999999999999999999999999998852 1 2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
+....|..+.. .+.|+++|+||+|+...
T Consensus 113 ~~~~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 113 QTETVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 23445544433 36899999999998864
No 202
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.70 E-value=1e-07 Score=89.10 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=69.9
Q ss_pred eCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 170 SNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
++..+.+|||+|+...+. .+..+++++|+++||+|.++. .... ..+++.+ .. .+.|
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~----------~~~~--~~i~~~l-~~---~~~p 109 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW----------NGDG--EFVLTKL-QN---LKRP 109 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CchH--HHHHHHH-Hh---cCCC
Confidence 456789999999865422 234567899999999999885 2222 1222222 22 3579
Q ss_pred EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 242 FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 242 iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+++++||+|+..... +... +. .+.... . ...++.+||+++.|++++++++.+
T Consensus 110 ~ilV~NK~Dl~~~~~------~~~~-----------------~~-~~~~~~---~-~~~v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 110 VVLTRNKLDNKFKDK------LLPL-----------------ID-KYAILE---D-FKDIVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred EEEEEECeeCCCHHH------HHHH-----------------HH-HHHhhc---C-CCceEEEecCCCCCHHHHHHHHHH
Confidence 999999999853211 1110 00 011110 1 115789999999999999999877
Q ss_pred HH
Q psy3651 322 TI 323 (334)
Q Consensus 322 ~I 323 (334)
.+
T Consensus 162 ~l 163 (270)
T TIGR00436 162 HL 163 (270)
T ss_pred hC
Confidence 54
No 203
>KOG4423|consensus
Probab=98.69 E-value=2.1e-08 Score=87.21 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=86.1
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH---hhcCCCCCcEEEEEeC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII---NNVIFRNVSFILFLNK 248 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~---~~~~~~~~piiL~lNK 248 (334)
+++++||++||+++..+..-||+.+++...|+|+|.. -.++-...|-+.+. +-|.-...|+++..||
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s----------~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRS----------LTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccc----------ccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 6889999999999999999999999999999999986 34444444444443 3345556789999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
||....-+ ... . .+|.+..+. +.-...++|||+...||.++-+.+++.|+.+.
T Consensus 145 Cd~e~~a~--~~~--~---------------------~~~d~f~ke-ngf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 145 CDQEKSAK--NEA--T---------------------RQFDNFKKE-NGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred hccChHhh--hhh--H---------------------HHHHHHHhc-cCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 99754322 110 0 111121111 12234789999999999999999999988654
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.68 E-value=9.5e-08 Score=94.94 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=78.5
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.+..|+.+....++.++.++.+|||+|++.+.+.......+++++|+|+|.++.... .....+.+.+ +.
T Consensus 66 r~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~------~~~~~~~~~~----~~ 135 (425)
T PRK12317 66 RERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV------MPQTREHVFL----AR 135 (425)
T ss_pred hhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC------CcchHHHHHH----HH
Confidence 3455677777778888899999999999977655444556789999999999862000 0111222222 11
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
. ....|+++++||+|+.... ...+ +...+-+.+.+....- ....+.++.+||+++.||.
T Consensus 136 ~--~~~~~iivviNK~Dl~~~~----~~~~--------------~~~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~ 194 (425)
T PRK12317 136 T--LGINQLIVAINKMDAVNYD----EKRY--------------EEVKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVV 194 (425)
T ss_pred H--cCCCeEEEEEEcccccccc----HHHH--------------HHHHHHHHHHHHhhCC-CcCcceEEEeecccCCCcc
Confidence 1 1224799999999986411 0000 1111122222211111 1134678999999999998
Q ss_pred HHH
Q psy3651 314 IVF 316 (334)
Q Consensus 314 ~vf 316 (334)
+.+
T Consensus 195 ~~~ 197 (425)
T PRK12317 195 KKS 197 (425)
T ss_pred ccc
Confidence 744
No 205
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.66 E-value=1.3e-07 Score=96.31 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=63.5
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.|..|+......+.+++.++.+|||+|+..+......+++.++++|+|+|.++- -......+|+.. .
T Consensus 62 ~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~~~-~- 128 (526)
T PRK00741 62 QRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-----------VEPQTRKLMEVC-R- 128 (526)
T ss_pred hhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-----------CCHHHHHHHHHH-H-
Confidence 344555555677888899999999999998888777789999999999999873 112233444332 2
Q ss_pred cCCCCCcEEEEEeCCCcch
Q psy3651 235 VIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~ 253 (334)
..++|+++|+||+|+..
T Consensus 129 --~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 129 --LRDTPIFTFINKLDRDG 145 (526)
T ss_pred --hcCCCEEEEEECCcccc
Confidence 25789999999999865
No 206
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.64 E-value=5.1e-07 Score=84.52 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=69.2
Q ss_pred CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
-+|.|-+ +.|.-|+......+..++.++.+|||+|+..+..-|..+++.++++|+|+|.++-- ..
T Consensus 39 ~D~~~~E----~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~ 103 (270)
T cd01886 39 MDFMEQE----RERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EP 103 (270)
T ss_pred cCCCccc----cCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CH
Confidence 4555543 34555666667788889999999999999999889999999999999999998741 12
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
....+++.+.. .+.|+++|+||+|+..
T Consensus 104 ~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 104 QTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 23344444432 4579999999999864
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.63 E-value=1.3e-07 Score=99.71 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=72.3
Q ss_pred EeeCcceeeeecCCccc--------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651 168 VISNIPFLFVDVGGQRS--------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN 239 (334)
Q Consensus 168 ~~~~~~~~i~DvgGq~~--------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~ 239 (334)
...+..+.+|||||+.. .+..+..+++++|++|||+|.++.- ....+ .+.+.+ .. .+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~---------~~~d~--~i~~~L-r~---~~ 383 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL---------TSTDE--RIVRML-RR---AG 383 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHH--HHHHHH-Hh---cC
Confidence 44567899999999874 2344556789999999999997620 11111 222222 21 56
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
.|++|++||+|+..... ... .|..+. -. ..+++||+++.||.++|+++
T Consensus 384 ~pvIlV~NK~D~~~~~~-----~~~----------------------~~~~lg---~~--~~~~iSA~~g~GI~eLl~~i 431 (712)
T PRK09518 384 KPVVLAVNKIDDQASEY-----DAA----------------------EFWKLG---LG--EPYPISAMHGRGVGDLLDEA 431 (712)
T ss_pred CCEEEEEECcccccchh-----hHH----------------------HHHHcC---CC--CeEEEECCCCCCchHHHHHH
Confidence 89999999999753210 011 111111 01 13689999999999999999
Q ss_pred HHHHHH
Q psy3651 320 KNTILH 325 (334)
Q Consensus 320 ~~~I~~ 325 (334)
.+.+..
T Consensus 432 ~~~l~~ 437 (712)
T PRK09518 432 LDSLKV 437 (712)
T ss_pred HHhccc
Confidence 987754
No 208
>KOG0090|consensus
Probab=98.63 E-value=2.6e-07 Score=82.20 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=91.8
Q ss_pred cceeEEEEEeeCcceeeeecCCccccccccccccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH-Hhhc
Q psy3651 160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI-INNV 235 (334)
Q Consensus 160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i-~~~~ 235 (334)
+--++..+..++-..+++|++|+.+-|.+-..||. .+.+||||||...++ ....+.-+.+-.+ .++.
T Consensus 70 iepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~ 140 (238)
T KOG0090|consen 70 IEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSR 140 (238)
T ss_pred eccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhc
Confidence 33455667777778999999999999999999998 799999999999984 3345555554444 4443
Q ss_pred -CCCCCcEEEEEeCCCcchhhhccccchhhhhC-------------------CCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 236 -IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHF-------------------PEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 236 -~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~F-------------------p~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.-..+|++|.+||+|++.+|- ..-+++.. .++..+....+...+| +|.++ .
T Consensus 141 ~~~~~~~vLIaCNKqDl~tAkt---~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF---~fs~l---~ 211 (238)
T KOG0090|consen 141 VKKNKPPVLIACNKQDLFTAKT---AEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDF---KFSHL---E 211 (238)
T ss_pred cccCCCCEEEEecchhhhhcCc---HHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccc---chhhc---c
Confidence 345679999999999987542 11111110 0111111111111110 11111 1
Q ss_pred CCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 296 KKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
...+.+-++|++++ +|.+.-+|+.+.
T Consensus 212 ~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 212 DQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cceeEEeecccCcC-ChHHHHHHHHHh
Confidence 24577888999988 899999998764
No 209
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.63 E-value=1.5e-07 Score=93.25 Aligned_cols=114 Identities=21% Similarity=0.168 Sum_probs=75.4
Q ss_pred EEEEEeeCcceeeeecCCc--------ccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 164 EFTIVISNIPFLFVDVGGQ--------RSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq--------~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
...+..++..+.+|||+|. +..+..+..+++++++||||+|.++. -......+.+. +..
T Consensus 39 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~-----------~~~~d~~i~~~-l~~- 105 (429)
T TIGR03594 39 YGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG-----------LTPEDEEIAKW-LRK- 105 (429)
T ss_pred EEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-----------CCHHHHHHHHH-HHH-
Confidence 3455567788999999996 33445567788999999999998873 11111222222 221
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
.+.|+++++||+|+..... . ..+ |..+. --.++.+||+.+.|+.++
T Consensus 106 --~~~piilVvNK~D~~~~~~--~---~~~----------------------~~~lg-----~~~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 106 --SGKPVILVANKIDGKKEDA--V---AAE----------------------FYSLG-----FGEPIPISAEHGRGIGDL 151 (429)
T ss_pred --hCCCEEEEEECccCCcccc--c---HHH----------------------HHhcC-----CCCeEEEeCCcCCChHHH
Confidence 3579999999999865321 0 000 11111 114789999999999999
Q ss_pred HHHHHHHHH
Q psy3651 316 FNAVKNTIL 324 (334)
Q Consensus 316 f~~v~~~I~ 324 (334)
++++.+.+-
T Consensus 152 l~~i~~~l~ 160 (429)
T TIGR03594 152 LDAILELLP 160 (429)
T ss_pred HHHHHHhcC
Confidence 999887663
No 210
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.58 E-value=8.7e-07 Score=77.79 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=66.0
Q ss_pred CcceeeeecCCcc----------cccccccccccC---CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 171 NIPFLFVDVGGQR----------SQRRKWFQCFDS---VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 171 ~~~~~i~DvgGq~----------~~r~kw~~~f~~---v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
+..+.+||++|.. ..+.....++.. ++++++|+|.+.... ... ..+. ..+..
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~---------~~~--~~i~-~~l~~--- 133 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK---------ELD--LQMI-EWLKE--- 133 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC---------HHH--HHHH-HHHHH---
Confidence 4789999999953 222333455554 467889998776311 111 1111 12221
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|+++++||+|+....- . +...+.+...+.. ....++.|||+++.|++++|+
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~------~--------------~~~~~~i~~~l~~------~~~~~~~~Sa~~~~gi~~l~~ 187 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGE------R--------------KKQLKKVRKALKF------GDDEVILFSSLKKQGIDELRA 187 (196)
T ss_pred cCCcEEEEEECcccCCHHH------H--------------HHHHHHHHHHHHh------cCCceEEEEcCCCCCHHHHHH
Confidence 3578999999999865311 0 0011112222111 134577999999999999999
Q ss_pred HHHHHH
Q psy3651 318 AVKNTI 323 (334)
Q Consensus 318 ~v~~~I 323 (334)
.+.+.+
T Consensus 188 ~i~~~~ 193 (196)
T PRK00454 188 AIAKWL 193 (196)
T ss_pred HHHHHh
Confidence 887654
No 211
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.54 E-value=8.1e-07 Score=82.81 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=64.7
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.+..|+......+..++..+.+||++|+..+...|..++..++++|+|+|.++.. .......|+.+..
T Consensus 47 ~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~-----------~~~~~~~~~~~~~- 114 (268)
T cd04170 47 KRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGV-----------EVGTEKLWEFADE- 114 (268)
T ss_pred hhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC-----------CHHHHHHHHHHHH-
Confidence 3455666666777788899999999999888888999999999999999999852 1233344444322
Q ss_pred cCCCCCcEEEEEeCCCcchh
Q psy3651 235 VIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~e 254 (334)
.+.|+++|+||+|+...
T Consensus 115 ---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 115 ---AGIPRIIFINKMDRERA 131 (268)
T ss_pred ---cCCCEEEEEECCccCCC
Confidence 46799999999998753
No 212
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.54 E-value=6.7e-07 Score=87.94 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=80.2
Q ss_pred eeeecceeEEEEEeeC-cceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 156 RKATKGITEFTIVISN-IPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
+.|..|+ +...+ ..+.++|++|...-. .....+++.+++++||+|++..|.. ..+.+...+
T Consensus 194 ~~p~~Gi----v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~-------d~~e~~~~l 262 (390)
T PRK12298 194 LVPNLGV----VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS-------DPVENARII 262 (390)
T ss_pred cCcEEEE----EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc-------ChHHHHHHH
Confidence 4455554 33443 569999999986422 1223357899999999999854210 233443444
Q ss_pred HHHHHh-hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651 228 FDTIIN-NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA 306 (334)
Q Consensus 228 f~~i~~-~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA 306 (334)
.+++.. .+.+.+.|++|++||+|+..+.. +.+ .+.. +... . .....++.+||
T Consensus 263 ~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e------l~~-----------------~l~~-l~~~--~-~~~~~Vi~ISA 315 (390)
T PRK12298 263 INELEKYSPKLAEKPRWLVFNKIDLLDEEE------AEE-----------------RAKA-IVEA--L-GWEGPVYLISA 315 (390)
T ss_pred HHHHHhhhhhhcCCCEEEEEeCCccCChHH------HHH-----------------HHHH-HHHH--h-CCCCCEEEEEC
Confidence 444443 23345789999999999864321 111 1111 0110 0 11124688999
Q ss_pred ecCchHHHHHHHHHHHHHH
Q psy3651 307 VDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 307 ~d~~nI~~vf~~v~~~I~~ 325 (334)
+++.+|.+++++|.+.+..
T Consensus 316 ~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCCcCHHHHHHHHHHHhhh
Confidence 9999999999999887654
No 213
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.53 E-value=1e-06 Score=80.17 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=54.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+|||+|+..+......+++.++++|+|+|.++- ...+...++..... .+.|++|++||+|
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g-----------~~~~t~~~l~~~~~----~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG-----------VCVQTETVLRQALK----ERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC-----------CCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence 67899999999999988888899999999999999873 23344555555443 3579999999999
Q ss_pred cch
Q psy3651 251 LLA 253 (334)
Q Consensus 251 l~~ 253 (334)
+..
T Consensus 137 ~~~ 139 (222)
T cd01885 137 RLI 139 (222)
T ss_pred cch
Confidence 863
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.53 E-value=2.5e-07 Score=91.49 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+||++|++.+.+.|......+|++|+|+|.++-. ......+.+.++ .. ....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l----~~--~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMAL----EI--IGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHH----HH--cCCCeEEEEEEccc
Confidence 467899999999999999998889999999999999731 002223333332 11 22347999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+....- ....+ +...+++... ....+.++.+||+++.|+..+++++...+
T Consensus 146 l~~~~~--~~~~~--------------~~i~~~l~~~-------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 146 LVSKEK--ALENY--------------EEIKEFVKGT-------VAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred cCCHHH--HHHHH--------------HHHHhhhhhc-------ccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 864311 00000 1111111111 01346789999999999999999988754
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.51 E-value=7.8e-07 Score=81.47 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=37.6
Q ss_pred cceeEEEEEeeCcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCcc
Q psy3651 160 KGITEFTIVISNIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYD 209 (334)
Q Consensus 160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d 209 (334)
.......+.+++..+++||++|+.... +.+..++++++++++|+|+++.+
T Consensus 35 ~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 35 LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence 334445566788999999999985432 23456899999999999998764
No 216
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.51 E-value=1.3e-06 Score=77.82 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=77.3
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.|..|+......++.++..+.+.||+|...+.+-.......+|++|+|+|.+.- -.......+..+..
T Consensus 48 ~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~- 115 (195)
T cd01884 48 ARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG-----------PMPQTREHLLLARQ- 115 (195)
T ss_pred hcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH-
Confidence 344455555556666788899999999987655555667789999999998762 12223333443332
Q ss_pred cCCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 235 VIFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.+.| +|+++||+|+..+. . . .+...+.+++.+..+... ...++++++||.+|.|+.
T Consensus 116 ---~~~~~iIvviNK~D~~~~~---~---~-------------~~~~~~~i~~~l~~~g~~-~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 116 ---VGVPYIVVFLNKADMVDDE---E---L-------------LELVEMEVRELLSKYGFD-GDNTPIVRGSALKALEGD 172 (195)
T ss_pred ---cCCCcEEEEEeCCCCCCcH---H---H-------------HHHHHHHHHHHHHHhccc-ccCCeEEEeeCccccCCC
Confidence 2355 88999999985321 0 0 111222344433333221 245889999999999864
No 217
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.50 E-value=1.1e-06 Score=73.80 Aligned_cols=113 Identities=21% Similarity=0.279 Sum_probs=70.8
Q ss_pred EeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651 168 VISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN 239 (334)
Q Consensus 168 ~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~ 239 (334)
...+..+.+||++|...... .+.+++.+++++++|+|.++... ... ..+...+.. .+
T Consensus 47 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--------~~~---~~~~~~~~~----~~ 111 (168)
T cd04163 47 TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--------EGD---EFILELLKK----SK 111 (168)
T ss_pred EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--------chH---HHHHHHHHH----hC
Confidence 33457899999999865432 33456789999999999998510 111 122222222 25
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
.|+++++||+|+....- .+.+ .+ ..+.. ......++.+||+++.+++++++++
T Consensus 112 ~~~iiv~nK~Dl~~~~~-----~~~~-----------------~~-~~~~~----~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 112 TPVILVLNKIDLVKDKE-----DLLP-----------------LL-EKLKE----LGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred CCEEEEEEchhccccHH-----HHHH-----------------HH-HHHHh----ccCCCceEEEEeccCCChHHHHHHH
Confidence 79999999999863210 0111 11 11111 1123457899999999999999998
Q ss_pred HHH
Q psy3651 320 KNT 322 (334)
Q Consensus 320 ~~~ 322 (334)
.+.
T Consensus 165 ~~~ 167 (168)
T cd04163 165 VKY 167 (168)
T ss_pred Hhh
Confidence 764
No 218
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.49 E-value=2.7e-07 Score=86.28 Aligned_cols=85 Identities=15% Similarity=0.287 Sum_probs=63.7
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.|..|+......+..++.++.+|||+|+..+...+..+++.++++|+|+|.++-- ......+++.. .
T Consensus 53 ~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-----------~~~~~~i~~~~-~ 120 (267)
T cd04169 53 KQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-----------EPQTRKLFEVC-R 120 (267)
T ss_pred HhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-----------cHHHHHHHHHH-H
Confidence 34555666677788889999999999999988877777899999999999998731 11222334332 2
Q ss_pred hcCCCCCcEEEEEeCCCcch
Q psy3651 234 NVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~ 253 (334)
..+.|+++|+||+|+..
T Consensus 121 ---~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 121 ---LRGIPIITFINKLDREG 137 (267)
T ss_pred ---hcCCCEEEEEECCccCC
Confidence 14689999999999854
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.49 E-value=1.3e-06 Score=90.23 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=48.8
Q ss_pred eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
+.+|||+|++.++..|...+..++++|+|+|.++- ...++...+..+.. .+.|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-----------~~~qt~e~i~~~~~----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-----------FQPQTIEAINILKR----RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-----------CCHhHHHHHHHHHH----cCCCEEEEEECcCCc
Confidence 78999999999999999999999999999999872 11222222222211 468999999999985
No 220
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.49 E-value=1.2e-06 Score=90.94 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=79.8
Q ss_pred eeecceeEEEEEe-eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 157 KATKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 157 ~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..|+.+....+.. ++..+.+|||+|++.+-+.-...+.++|++++|+|..+- .+....+.+. ++..
T Consensus 35 GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg-----------~~~qT~ehl~-il~~- 101 (614)
T PRK10512 35 GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG-----------VMAQTREHLA-ILQL- 101 (614)
T ss_pred CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC-----------CcHHHHHHHH-HHHH-
Confidence 4444443334433 356789999999998866666778899999999998862 2333333332 2222
Q ss_pred CCCCCc-EEEEEeCCCcchh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 236 IFRNVS-FILFLNKTDLLAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 236 ~~~~~p-iiL~lNK~Dl~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.+.| ++|++||+|+..+ ++ . ...+-+.+.+.... -....++.+||+++.||.
T Consensus 102 --lgi~~iIVVlNKiDlv~~~~~--~-------------------~v~~ei~~~l~~~~---~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 102 --TGNPMLTVALTKADRVDEARI--A-------------------EVRRQVKAVLREYG---FAEAKLFVTAATEGRGID 155 (614)
T ss_pred --cCCCeEEEEEECCccCCHHHH--H-------------------HHHHHHHHHHHhcC---CCCCcEEEEeCCCCCCCH
Confidence 2344 6899999998642 22 0 01111222211111 123568899999999999
Q ss_pred HHHHHHHHHH
Q psy3651 314 IVFNAVKNTI 323 (334)
Q Consensus 314 ~vf~~v~~~I 323 (334)
.+++.+.+..
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 221
>PRK12740 elongation factor G; Reviewed
Probab=98.48 E-value=9.1e-07 Score=92.85 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=68.4
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.|..|++.....+.+++..+.+|||+|+..+...|..++..+|++|+|+|.++.. ......++..+..
T Consensus 42 ~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-----------~~~~~~~~~~~~~ 110 (668)
T PRK12740 42 RERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-----------EPQTETVWRQAEK 110 (668)
T ss_pred HhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-----------CHHHHHHHHHHHH
Confidence 34677888888889999999999999999988888899999999999999998741 2233445544433
Q ss_pred hcCCCCCcEEEEEeCCCcchh
Q psy3651 234 NVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~e 254 (334)
.+.|+++|+||+|+...
T Consensus 111 ----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 111 ----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred ----cCCCEEEEEECCCCCCC
Confidence 36799999999998754
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.47 E-value=1.6e-06 Score=77.99 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=51.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|+..+...+..++..++++|+|+|.++.. . .+...++..... .+.|+++++||+|
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~----------~-~~~~~~~~~~~~----~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV----------T-SNTERLIRHAIL----EGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC----------C-HHHHHHHHHHHH----cCCCEEEEEECcc
Confidence 478999999999999888999999999999999998752 1 122333333322 3489999999999
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 85
No 223
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.45 E-value=1.8e-06 Score=88.03 Aligned_cols=83 Identities=13% Similarity=0.240 Sum_probs=60.3
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
|.-|+......+..++..+.+|||+|+..+..-...++..++++|+|+|.++- -......+++ ++..
T Consensus 64 rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~- 130 (527)
T TIGR00503 64 RGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL- 130 (527)
T ss_pred cCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh-
Confidence 44445455667888899999999999988776556678999999999998873 1112233443 3332
Q ss_pred CCCCCcEEEEEeCCCcch
Q psy3651 236 IFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~ 253 (334)
.+.|+++|+||+|+..
T Consensus 131 --~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 131 --RDTPIFTFMNKLDRDI 146 (527)
T ss_pred --cCCCEEEEEECccccC
Confidence 5689999999999853
No 224
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.44 E-value=3.5e-07 Score=78.66 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=77.2
Q ss_pred ecceeEEEEEeeCcceeeeecCCccc------ccccccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRS------QRRKWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~------~r~kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|+-.....+.+++..+.++|++|--+ +.+.+..+. +..|+||.|+|.+. ++.++.+..+
T Consensus 34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~q 100 (156)
T PF02421_consen 34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTLQ 100 (156)
T ss_dssp SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHHH
T ss_pred CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHHH
Confidence 44455667777889999999999644 234455565 68999999999876 4566777777
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.. .+.|+++++||+|+.+++= -..+... +.+. -+++++.+||++++
T Consensus 101 l~e----~g~P~vvvlN~~D~a~~~g--~~id~~~------------------Ls~~---------Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 101 LLE----LGIPVVVVLNKMDEAERKG--IEIDAEK------------------LSER---------LGVPVIPVSARTGE 147 (156)
T ss_dssp HHH----TTSSEEEEEETHHHHHHTT--EEE-HHH------------------HHHH---------HTS-EEEEBTTTTB
T ss_pred HHH----cCCCEEEEEeCHHHHHHcC--CEECHHH------------------HHHH---------hCCCEEEEEeCCCc
Confidence 765 4689999999999877531 1111111 1111 24679999999999
Q ss_pred hHHHHHHHH
Q psy3651 311 NIKIVFNAV 319 (334)
Q Consensus 311 nI~~vf~~v 319 (334)
|++++++.|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999998764
No 225
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=5.7e-07 Score=83.05 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=63.2
Q ss_pred ccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccch
Q psy3651 183 RSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTS 262 (334)
Q Consensus 183 ~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~ 262 (334)
++++.+...+++++++++.|+|+++.+ .++.....|+. .+.. .++|++|++||+||..++. ...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~---------~s~~~l~r~l~-~~~~---~~i~~vIV~NK~DL~~~~~--~~~- 87 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPE---------LSLNQLDRFLV-VAEA---QNIEPIIVLNKIDLLDDED--MEK- 87 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCC---------CCHHHHHHHHH-HHHH---CCCCEEEEEECcccCCCHH--HHH-
Confidence 345566667999999999999999862 12222222222 2222 5789999999999854321 000
Q ss_pred hhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 263 IAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 263 l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+ .+ +.|. ..++.+++|||++++||+++|+.+.+
T Consensus 88 --~-----------------~~-~~~~------~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 88 --E-----------------QL-DIYR------NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred --H-----------------HH-HHHH------HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 0 11 1221 13466889999999999999988764
No 226
>KOG0462|consensus
Probab=98.43 E-value=2.7e-06 Score=84.91 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=95.1
Q ss_pred ceeeeecceeEEEEEeeC---cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 154 HARKATKGITEFTIVISN---IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~---~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|-|.-|+-.....+.+++ ..++++||.|+-.|+.=-.+-+.-|+++|+|||.+. .-..+.+..|.-
T Consensus 104 RERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-----------GvqAQT~anf~l 172 (650)
T KOG0462|consen 104 RERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-----------GVQAQTVANFYL 172 (650)
T ss_pred hhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-----------CchHHHHHHHHH
Confidence 445555555556666666 899999999999998877778889999999999998 556666666655
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
..+ .+..+|.|+||+|+..+.. +.+..-+.+.|.- -.-.+..+||+.|.
T Consensus 173 Afe----~~L~iIpVlNKIDlp~adp---------------------e~V~~q~~~lF~~------~~~~~i~vSAK~G~ 221 (650)
T KOG0462|consen 173 AFE----AGLAIIPVLNKIDLPSADP---------------------ERVENQLFELFDI------PPAEVIYVSAKTGL 221 (650)
T ss_pred HHH----cCCeEEEeeeccCCCCCCH---------------------HHHHHHHHHHhcC------CccceEEEEeccCc
Confidence 555 4678999999999987644 2222233344322 11257889999999
Q ss_pred hHHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTIL 324 (334)
Q Consensus 311 nI~~vf~~v~~~I~ 324 (334)
|+.+++++|.+.|-
T Consensus 222 ~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 222 NVEELLEAIIRRVP 235 (650)
T ss_pred cHHHHHHHHHhhCC
Confidence 99999999888664
No 227
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.41 E-value=2.2e-06 Score=90.29 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=65.1
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.+.-|+-.....+..++..+.+|||+|+..+...|...++.+|++|+|+|.++- ...+...++..+..
T Consensus 58 ~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~- 125 (689)
T TIGR00484 58 ERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG-----------VQPQSETVWRQANR- 125 (689)
T ss_pred hcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC-----------CChhHHHHHHHHHH-
Confidence 345566666778888999999999999998888899999999999999998873 11223344444332
Q ss_pred cCCCCCcEEEEEeCCCcchh
Q psy3651 235 VIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~e 254 (334)
.+.|++|++||+|+...
T Consensus 126 ---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 126 ---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ---cCCCEEEEEECCCCCCC
Confidence 35799999999998753
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.36 E-value=1.3e-06 Score=86.49 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=69.2
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.+.+....-..+++++|+|+|+++-.. .....+.+.+++ . ....|+++++||+|+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~-------~~~t~~~l~~l~---~---~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP-------QPQTKEHLMALD---I---IGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------ChhHHHHHHHHH---H---cCCCcEEEEEEeecc
Confidence 578999999998765543333345799999999996310 011222222221 1 122479999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..+.- .... .+....++.. .....+.++.+||+++.|+..+++++.+.+
T Consensus 152 ~~~~~------~~~~----------~~~i~~~l~~-------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 152 VSKER------ALEN----------YEQIKEFVKG-------TVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred ccchh------HHHH----------HHHHHHHhcc-------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 64311 0000 0111111110 011346789999999999999999988755
No 229
>PRK00089 era GTPase Era; Reviewed
Probab=98.36 E-value=5.1e-06 Score=78.29 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=70.7
Q ss_pred eCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 170 SNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
++..+.+|||+|....+. .+...+.++|+++||+|.++.- . +....+-..+.. .+.|
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~---------~---~~~~~i~~~l~~---~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI---------G---PGDEFILEKLKK---VKTP 115 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC---------C---hhHHHHHHHHhh---cCCC
Confidence 457899999999865432 2334678999999999998820 1 111122222221 3579
Q ss_pred EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 242 FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 242 iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+++++||+|+...+- . +.. .+ +.+... .....++.+||+++.|+.++++++.+
T Consensus 116 vilVlNKiDl~~~~~--~---l~~-----------------~~-~~l~~~----~~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 116 VILVLNKIDLVKDKE--E---LLP-----------------LL-EELSEL----MDFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred EEEEEECCcCCCCHH--H---HHH-----------------HH-HHHHhh----CCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 999999999863211 0 110 00 111111 12345789999999999999999887
Q ss_pred HHH
Q psy3651 322 TIL 324 (334)
Q Consensus 322 ~I~ 324 (334)
.+.
T Consensus 169 ~l~ 171 (292)
T PRK00089 169 YLP 171 (292)
T ss_pred hCC
Confidence 653
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.30 E-value=8.4e-06 Score=74.25 Aligned_cols=134 Identities=10% Similarity=0.132 Sum_probs=75.1
Q ss_pred EEEeeCcceeeeecCCccccccccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~~~~~i~DvgGq~~~r~kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+..++..+.+.|++|++.+.+--..... .+|++++|+|...- -......++..+.. .+.|++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g-----------~~~~d~~~l~~l~~----~~ip~i 142 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG-----------IIGMTKEHLGLALA----LNIPVF 142 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----cCCCEE
Confidence 34556788999999999877554444443 58999999998763 22333444444433 457899
Q ss_pred EEEeCCCcchh-hhccccchhhhhCC--CCCCCCc---cHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 244 LFLNKTDLLAE-KLRTSKTSIAEHFP--EFEGDPQ---DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 244 L~lNK~Dl~~e-ki~~~~~~l~~~Fp--~y~g~~~---~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
+++||+|+..+ ++.+....+.+.+. .+...|. +.+++.... .+. .....++++.+||.+|+|++++..
T Consensus 143 vvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~----~~~--~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 143 VVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAA----SNF--SSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred EEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehh----hcC--CccccCcEEEeeCCCccCHHHHHH
Confidence 99999998543 12001112222211 0000000 000000000 000 112345889999999999999877
Q ss_pred HHH
Q psy3651 318 AVK 320 (334)
Q Consensus 318 ~v~ 320 (334)
.+.
T Consensus 217 ~L~ 219 (224)
T cd04165 217 FLN 219 (224)
T ss_pred HHH
Confidence 653
No 231
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.30 E-value=8e-06 Score=88.67 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=74.7
Q ss_pred eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+.+|||+|++.+.......+..++++|+|+|+++-- .....+++.+. .. .+.|+++++||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--------~~qT~e~I~~l---k~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--------KPQTIEAINIL---RQ----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC--------CHhHHHHHHHH---HH----cCCCEEEEEECCCCcc
Confidence 899999999999887777888999999999998620 01222333322 22 3579999999999853
Q ss_pred -hhhccccchhhhhCCCCCCCCccHHHHHHHHHH-------HHHhhc---------cCCCCCeEEEEEeeecCchHHHHH
Q psy3651 254 -EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLN-------YFKAVK---------RDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 254 -eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~-------~F~~l~---------~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
.++. ...++..-+ . ...+.+.+-+.+ .+.+.. ..-.+.+.+..+||++|+||.++.
T Consensus 593 ~~~~~-~~~~~~~~~---~---~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll 665 (1049)
T PRK14845 593 GWNIS-EDEPFLLNF---N---EQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELL 665 (1049)
T ss_pred ccccc-cchhhhhhh---h---hhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHH
Confidence 2210 111221100 0 000111111111 111110 011256788999999999999999
Q ss_pred HHHHH
Q psy3651 317 NAVKN 321 (334)
Q Consensus 317 ~~v~~ 321 (334)
.++..
T Consensus 666 ~~l~~ 670 (1049)
T PRK14845 666 MMVAG 670 (1049)
T ss_pred HHHHH
Confidence 87754
No 232
>PRK12736 elongation factor Tu; Reviewed
Probab=98.29 E-value=7e-06 Score=80.94 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=53.9
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..|+......+..++..+.++|++|++.+.+.-..-...+|++|+|+|.++- ......+.+..+..
T Consensus 60 g~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g-----------~~~~t~~~~~~~~~--- 125 (394)
T PRK12736 60 GITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-----------PMPQTREHILLARQ--- 125 (394)
T ss_pred CccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-----------CchhHHHHHHHHHH---
Confidence 3344444445555677899999999987665555555678999999998762 22333444443332
Q ss_pred CCCCc-EEEEEeCCCcc
Q psy3651 237 FRNVS-FILFLNKTDLL 252 (334)
Q Consensus 237 ~~~~p-iiL~lNK~Dl~ 252 (334)
.+.| +|+++||+|+.
T Consensus 126 -~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 126 -VGVPYLVVFLNKVDLV 141 (394)
T ss_pred -cCCCEEEEEEEecCCc
Confidence 2466 78999999986
No 233
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.27 E-value=9.2e-07 Score=77.82 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=55.7
Q ss_pred eCcceeeeecCCccccccccccc---ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEE
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQC---FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFIL 244 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~---f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL 244 (334)
.+..++++|++|+.+.|..-... ..++.+||||+|.+... ..+.+.-+.+-.++..+. ...+|++|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~---------~~~~~~Ae~Ly~iL~~~~~~~~~~piLI 117 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ---------KELRDVAEYLYDILSDTEVQKNKPPILI 117 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch---------hhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence 45789999999999999865554 77999999999998641 346666666666666544 35679999
Q ss_pred EEeCCCcchhh
Q psy3651 245 FLNKTDLLAEK 255 (334)
Q Consensus 245 ~lNK~Dl~~ek 255 (334)
++||+|++..+
T Consensus 118 acNK~Dl~~A~ 128 (181)
T PF09439_consen 118 ACNKQDLFTAK 128 (181)
T ss_dssp EEE-TTSTT--
T ss_pred EEeCccccccC
Confidence 99999998864
No 234
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.25 E-value=1.5e-06 Score=75.73 Aligned_cols=102 Identities=14% Similarity=0.267 Sum_probs=59.4
Q ss_pred ceeeeecCCccc------cccccc----cccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651 173 PFLFVDVGGQRS------QRRKWF----QCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN 239 (334)
Q Consensus 173 ~~~i~DvgGq~~------~r~kw~----~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~ 239 (334)
.+.+||++|... ++..|. .|++ .++++|+|+|.+.. -......++.. +.. .+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~-----------~~~~~~~~~~~-~~~---~~ 129 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP-----------LKELDLEMLEW-LRE---RG 129 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC-----------CCHHHHHHHHH-HHH---cC
Confidence 799999999642 233443 4554 46899999998763 11111222322 221 36
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.|+++++||+|+..+.- . +...+.+++.+... .....++.+||++++||+
T Consensus 130 ~pviiv~nK~D~~~~~~------~--------------~~~~~~i~~~l~~~----~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSE------L--------------NKQLKKIKKALKKD----ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCEEEEEECcccCCHHH------H--------------HHHHHHHHHHHhhc----cCCCceEEEECCCCCCCC
Confidence 79999999999864310 0 11112233332221 123468999999999873
No 235
>PRK12739 elongation factor G; Reviewed
Probab=98.24 E-value=7.9e-06 Score=86.14 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=69.1
Q ss_pred CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
-||.|.+ +.|.-|+-.....+..++..+.++||+|+..+..-|....+.+|++|+|+|.++- -..
T Consensus 48 ~D~~~~E----~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-----------~~~ 112 (691)
T PRK12739 48 MDWMEQE----QERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-----------VEP 112 (691)
T ss_pred cCCChhH----hhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-----------CCH
Confidence 3455543 3345566666777888999999999999998888899999999999999998763 122
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
....++..+.. .+.|+|+++||+|+..+
T Consensus 113 qt~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 113 QSETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 33345554433 45799999999999753
No 236
>PRK13768 GTPase; Provisional
Probab=98.22 E-value=4.3e-06 Score=77.53 Aligned_cols=132 Identities=18% Similarity=0.222 Sum_probs=73.1
Q ss_pred ceeeeecCCccc---ccccccccccC-----CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651 173 PFLFVDVGGQRS---QRRKWFQCFDS-----VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL 244 (334)
Q Consensus 173 ~~~i~DvgGq~~---~r~kw~~~f~~-----v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL 244 (334)
.+.+||++|+.. ++..|..+++. .++++||+|.+...+. ..+.. ..++...+.. ..+.|+++
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~-------~d~~~-~~~l~~~~~~--~~~~~~i~ 167 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP-------SDFVS-LLLLALSVQL--RLGLPQIP 167 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH-------HHHHH-HHHHHHHHHH--HcCCCEEE
Confidence 567999999876 46677665543 8899999999764110 11111 1222222211 14689999
Q ss_pred EEeCCCcchhhhccccchhhhhCCC-------C--CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 245 FLNKTDLLAEKLRTSKTSIAEHFPE-------F--EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 245 ~lNK~Dl~~eki~~~~~~l~~~Fp~-------y--~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
++||+|+..+. ....+..++.+ + .+++. .....-+.+.+.+. .....++.+||+++++++++
T Consensus 168 v~nK~D~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~~~~~~i~~~----~~~~~vi~iSa~~~~gl~~L 238 (253)
T PRK13768 168 VLNKADLLSEE---ELERILKWLEDPEYLLEELKLEKGLQ--GLLSLELLRALEET----GLPVRVIPVSAKTGEGFDEL 238 (253)
T ss_pred EEEhHhhcCch---hHHHHHHHHhCHHHHHHHHhcccchH--HHHHHHHHHHHHHH----CCCCcEEEEECCCCcCHHHH
Confidence 99999986542 11122222211 0 01110 11111111112221 12245788999999999999
Q ss_pred HHHHHHHH
Q psy3651 316 FNAVKNTI 323 (334)
Q Consensus 316 f~~v~~~I 323 (334)
.+++.+.+
T Consensus 239 ~~~I~~~l 246 (253)
T PRK13768 239 YAAIQEVF 246 (253)
T ss_pred HHHHHHHc
Confidence 99987754
No 237
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.22 E-value=5.3e-06 Score=88.12 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=75.9
Q ss_pred eEEEEEeeCcceeeeecCCccccccc----------ccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 163 TEFTIVISNIPFLFVDVGGQRSQRRK----------WFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 163 ~~~~~~~~~~~~~i~DvgGq~~~r~k----------w~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
.+..+..++.++++||++|+.+.... +..++ +.+|++|+|+|.++. .+ .+.++.+
T Consensus 41 k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l----------er---~l~l~~q 107 (772)
T PRK09554 41 KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ER---NLYLTLQ 107 (772)
T ss_pred EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc----------hh---hHHHHHH
Confidence 34456667889999999999875431 33343 489999999999885 22 2344555
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.+ .+.|+++++||+|+.+++- ....+. -+.++ .++++..+||.+++
T Consensus 108 l~e----~giPvIvVlNK~Dl~~~~~--i~id~~------------------~L~~~---------LG~pVvpiSA~~g~ 154 (772)
T PRK09554 108 LLE----LGIPCIVALNMLDIAEKQN--IRIDID------------------ALSAR---------LGCPVIPLVSTRGR 154 (772)
T ss_pred HHH----cCCCEEEEEEchhhhhccC--cHHHHH------------------HHHHH---------hCCCEEEEEeecCC
Confidence 543 3689999999999864321 111111 11111 23568899999999
Q ss_pred hHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNT 322 (334)
Q Consensus 311 nI~~vf~~v~~~ 322 (334)
|++++.+.+.+.
T Consensus 155 GIdeL~~~I~~~ 166 (772)
T PRK09554 155 GIEALKLAIDRH 166 (772)
T ss_pred CHHHHHHHHHHh
Confidence 999998888664
No 238
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.20 E-value=2.9e-06 Score=74.77 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=62.5
Q ss_pred ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhh
Q psy3651 185 QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIA 264 (334)
Q Consensus 185 ~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~ 264 (334)
++..|..+++++++||+|+|+++.+.. ..+.+ .. ...+.|+++++||+|+..+.. ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~---------~~~~l------~~--~~~~~~~ilV~NK~Dl~~~~~--~~~--- 81 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS---------LIPRL------RL--FGGNNPVILVGNKIDLLPKDK--NLV--- 81 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc---------cchhH------HH--hcCCCcEEEEEEchhcCCCCC--CHH---
Confidence 578899999999999999999986321 11111 11 124679999999999864321 111
Q ss_pred hhCCCCCCCCccHHHHHHHHHH-HHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 265 EHFPEFEGDPQDMQAVQTFLLN-YFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 265 ~~Fp~y~g~~~~~~~~~~fi~~-~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
....+... .+.... -....++.+||+++.|++++++++.+.+
T Consensus 82 --------------~~~~~~~~~~~~~~~---~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 82 --------------RIKNWLRAKAAAGLG---LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --------------HHHHHHHHHHHhhcC---CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 11112200 001100 0112478899999999999999998754
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.16 E-value=1.8e-05 Score=78.01 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=52.7
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
|..|+......+..++..+.+||++|++.+.+.-..-...+|++|+|+|..+- -.....+.+..+..
T Consensus 59 rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g-----------~~~qt~e~l~~~~~-- 125 (394)
T TIGR00485 59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG-----------PMPQTREHILLARQ-- 125 (394)
T ss_pred cCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH--
Confidence 33444444445555677899999999987654433334567999999998872 22333344443332
Q ss_pred CCCCCc-EEEEEeCCCcch
Q psy3651 236 IFRNVS-FILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~p-iiL~lNK~Dl~~ 253 (334)
.+.| +|+++||+|+..
T Consensus 126 --~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 126 --VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred --cCCCEEEEEEEecccCC
Confidence 2456 457899999864
No 240
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.14 E-value=1.3e-05 Score=67.49 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=65.0
Q ss_pred ceeeeecCCcc----------ccccccccccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651 173 PFLFVDVGGQR----------SQRRKWFQCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN 239 (334)
Q Consensus 173 ~~~i~DvgGq~----------~~r~kw~~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~ 239 (334)
.+.+||++|-. ..+..+..|+. +++++++++|.....+ ....+...++.. .+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~l~~-------~~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT--------EIDLEMLDWLEE-------LG 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC--------HhHHHHHHHHHH-------cC
Confidence 88999999943 23344455554 4678999999876411 111122222222 24
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
.|+++++||+|+....- ..... . -+... +.. ......++.+||+++.++.++++++
T Consensus 111 ~~vi~v~nK~D~~~~~~---~~~~~-------------~----~~~~~---l~~-~~~~~~~~~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 111 IPFLVVLTKADKLKKSE---LAKAL-------------K----EIKKE---LKL-FEIDPPIILFSSLKGQGIDELRALI 166 (170)
T ss_pred CCEEEEEEchhcCChHH---HHHHH-------------H----HHHHH---HHh-ccCCCceEEEecCCCCCHHHHHHHH
Confidence 79999999999854211 00000 0 01111 110 1233557899999999999999998
Q ss_pred HHH
Q psy3651 320 KNT 322 (334)
Q Consensus 320 ~~~ 322 (334)
.+.
T Consensus 167 ~~~ 169 (170)
T cd01876 167 EKW 169 (170)
T ss_pred HHh
Confidence 764
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.10 E-value=1.4e-05 Score=79.95 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=81.6
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc--ccccHHHHHHHHHHH
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR--RTNRLHESRNIFDTI 231 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~--~~nrl~esl~lf~~i 231 (334)
+.|.-|+.+....|+.++..+.+.|++|++.+.+.-......+|++|+|+|.++= ..|.. ......+.+.+
T Consensus 67 r~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G---~~e~g~~~~~qT~eh~~~---- 139 (447)
T PLN00043 67 RERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG---GFEAGISKDGQTREHALL---- 139 (447)
T ss_pred HhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC---ceecccCCCchHHHHHHH----
Confidence 3455566666677777889999999999999988888889999999999999861 00100 00122222222
Q ss_pred HhhcCCCCC-cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 232 INNVIFRNV-SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 232 ~~~~~~~~~-piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.. .++ ++|+++||+|+..... .... ++++.+-+...+....-. ...+.+..+||.+|+
T Consensus 140 ~~~---~gi~~iIV~vNKmD~~~~~~--~~~~--------------~~~i~~ei~~~l~~~g~~-~~~~~~ipiSa~~G~ 199 (447)
T PLN00043 140 AFT---LGVKQMICCCNKMDATTPKY--SKAR--------------YDEIVKEVSSYLKKVGYN-PDKIPFVPISGFEGD 199 (447)
T ss_pred HHH---cCCCcEEEEEEcccCCchhh--hHHH--------------HHHHHHHHHHHHHHcCCC-cccceEEEEeccccc
Confidence 221 345 5899999999752111 1111 112222233322222211 134778999999999
Q ss_pred hHHH
Q psy3651 311 NIKI 314 (334)
Q Consensus 311 nI~~ 314 (334)
||.+
T Consensus 200 ni~~ 203 (447)
T PLN00043 200 NMIE 203 (447)
T ss_pred cccc
Confidence 9853
No 242
>PRK12735 elongation factor Tu; Reviewed
Probab=98.09 E-value=2.8e-05 Score=76.68 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=52.9
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+......+..++..+.++||+|++.+.+--..-..++|++++|+|..+- -.....+.+..+..
T Consensus 59 rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g-----------~~~qt~e~l~~~~~-- 125 (396)
T PRK12735 59 RGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ-- 125 (396)
T ss_pred cCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CchhHHHHHHHHHH--
Confidence 34444444445555677899999999986654444445688999999998862 11222233333222
Q ss_pred CCCCCcEE-EEEeCCCcch
Q psy3651 236 IFRNVSFI-LFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~pii-L~lNK~Dl~~ 253 (334)
.+.|.+ +++||+|+..
T Consensus 126 --~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 126 --VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --cCCCeEEEEEEecCCcc
Confidence 346754 6899999863
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.07 E-value=1.1e-05 Score=79.90 Aligned_cols=124 Identities=13% Similarity=0.105 Sum_probs=73.6
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.|.-|+......+..++.++.++|++|++.+-+.-..-...+|++|+|+|.++--+ ....+.+.+...
T Consensus 63 ~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--------~qt~~~~~~~~~---- 130 (406)
T TIGR02034 63 EQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--------EQTRRHSYIASL---- 130 (406)
T ss_pred cCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------cccHHHHHHHHH----
Confidence 34455555566677778899999999998875544455678999999999876310 111222222111
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~ 313 (334)
....++++++||+|+.... ...+ +-+.+.+..+... .-..+.++.+||.+|.|+.
T Consensus 131 --~~~~~iivviNK~D~~~~~----~~~~------------------~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 131 --LGIRHVVLAVNKMDLVDYD----EEVF------------------ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred --cCCCcEEEEEEecccccch----HHHH------------------HHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 1234689999999985421 0001 0111121111111 1134668899999999987
Q ss_pred H
Q psy3651 314 I 314 (334)
Q Consensus 314 ~ 314 (334)
+
T Consensus 187 ~ 187 (406)
T TIGR02034 187 S 187 (406)
T ss_pred c
Confidence 5
No 244
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=0.00011 Score=72.32 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=82.1
Q ss_pred EEEEEeeCcceeeeecCCccccccccc--ccc---------cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKWF--QCF---------DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~--~~f---------~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...++.++.++.++||+|-|+-.+.-. .+| +.++.+++|+|.++- -.++-+.+-.-+.
T Consensus 218 ~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~-----------~~~qD~~ia~~i~ 286 (444)
T COG1160 218 DIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG-----------ISEQDLRIAGLIE 286 (444)
T ss_pred eeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC-----------chHHHHHHHHHHH
Confidence 445666789999999999987544332 222 357999999999984 2333344444444
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.++++++||.|+.++. .. ..+...+-|..+|.-+ .-...+++||+++.++
T Consensus 287 ~----~g~~~vIvvNKWDl~~~~----~~--------------~~~~~k~~i~~~l~~l-----~~a~i~~iSA~~~~~i 339 (444)
T COG1160 287 E----AGRGIVIVVNKWDLVEED----EA--------------TMEEFKKKLRRKLPFL-----DFAPIVFISALTGQGL 339 (444)
T ss_pred H----cCCCeEEEEEccccCCch----hh--------------HHHHHHHHHHHHhccc-----cCCeEEEEEecCCCCh
Confidence 3 567999999999987641 00 1111222333333222 2346899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILH 325 (334)
Q Consensus 313 ~~vf~~v~~~I~~ 325 (334)
..+|+++.+..-.
T Consensus 340 ~~l~~~i~~~~~~ 352 (444)
T COG1160 340 DKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876544
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.01 E-value=2.7e-05 Score=78.05 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=80.4
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc--cccHHHHHHHHHHHH
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR--TNRLHESRNIFDTII 232 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~--~nrl~esl~lf~~i~ 232 (334)
.|.-|+.+....++.++..+.++|++|++.+-+-.......+|++|+|+|.++= ..|-.- .....+.+.+.
T Consensus 68 ~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G---~~e~~~~~~~qT~eh~~~~---- 140 (446)
T PTZ00141 68 ERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG---EFEAGISKDGQTREHALLA---- 140 (446)
T ss_pred hcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC---ceecccCCCccHHHHHHHH----
Confidence 345555556667777889999999999999887777778899999999998862 000000 01223333222
Q ss_pred hhcCCCCC-cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 233 NNVIFRNV-SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 233 ~~~~~~~~-piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
.. .++ ++|++.||+|.....- .. ...+.+.+-|...+..+.-. ...+.+..+||.+|.|
T Consensus 141 ~~---~gi~~iiv~vNKmD~~~~~~--~~--------------~~~~~i~~~i~~~l~~~g~~-~~~~~~ipiSa~~g~n 200 (446)
T PTZ00141 141 FT---LGVKQMIVCINKMDDKTVNY--SQ--------------ERYDEIKKEVSAYLKKVGYN-PEKVPFIPISGWQGDN 200 (446)
T ss_pred HH---cCCCeEEEEEEccccccchh--hH--------------HHHHHHHHHHHHHHHhcCCC-cccceEEEeecccCCC
Confidence 21 344 4789999999532100 00 01122223333333332211 2358899999999999
Q ss_pred HHH
Q psy3651 312 IKI 314 (334)
Q Consensus 312 I~~ 314 (334)
+.+
T Consensus 201 i~~ 203 (446)
T PTZ00141 201 MIE 203 (446)
T ss_pred ccc
Confidence 853
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.00 E-value=2.2e-05 Score=79.19 Aligned_cols=128 Identities=11% Similarity=0.126 Sum_probs=74.5
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.|.-|+-.....+..++..+.++||+|++.+.+....-...+|++|+|+|..+--+ ....+.+.+...
T Consensus 89 r~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~--------~qt~~~~~l~~~--- 157 (474)
T PRK05124 89 REQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL--------DQTRRHSFIATL--- 157 (474)
T ss_pred hhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc--------ccchHHHHHHHH---
Confidence 344555555556677778899999999998775544545689999999999876300 111122222111
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
....|+||++||+|+.... ...+ +...+.+......+.. .....++.+||+++.||.
T Consensus 158 ---lg~~~iIvvvNKiD~~~~~----~~~~--------------~~i~~~l~~~~~~~~~--~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 158 ---LGIKHLVVAVNKMDLVDYS----EEVF--------------ERIREDYLTFAEQLPG--NLDIRFVPLSALEGDNVV 214 (474)
T ss_pred ---hCCCceEEEEEeeccccch----hHHH--------------HHHHHHHHHHHHhcCC--CCCceEEEEEeecCCCcc
Confidence 1224789999999985321 0001 1111112111111110 124678999999999997
Q ss_pred HH
Q psy3651 314 IV 315 (334)
Q Consensus 314 ~v 315 (334)
..
T Consensus 215 ~~ 216 (474)
T PRK05124 215 SQ 216 (474)
T ss_pred cc
Confidence 53
No 247
>CHL00071 tufA elongation factor Tu
Probab=97.99 E-value=5.9e-05 Score=74.76 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=57.1
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+......++.++..+.+.|++|++.+-+....-...+|++++|+|..+- -.......+..+..
T Consensus 59 rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g-----------~~~qt~~~~~~~~~-- 125 (409)
T CHL00071 59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTKEHILLAKQ-- 125 (409)
T ss_pred CCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH--
Confidence 34455444556666778899999999887655555566789999999998762 22344444444332
Q ss_pred CCCCCc-EEEEEeCCCcch
Q psy3651 236 IFRNVS-FILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~p-iiL~lNK~Dl~~ 253 (334)
.+.| +|+++||+|+..
T Consensus 126 --~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 126 --VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred --cCCCEEEEEEEccCCCC
Confidence 3467 789999999864
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=5.2e-05 Score=75.85 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=82.1
Q ss_pred EEEEEe---eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651 164 EFTIVI---SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV 240 (334)
Q Consensus 164 ~~~~~~---~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~ 240 (334)
-+.+.. +...+.+.||+|++.|-.+...=.+=+|.+|+|+|..| -.+.+.++-....-+ .++
T Consensus 44 A~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD-----------Gv~pQTiEAI~hak~----a~v 108 (509)
T COG0532 44 AYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD-----------GVMPQTIEAINHAKA----AGV 108 (509)
T ss_pred eEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC-----------CcchhHHHHHHHHHH----CCC
Confidence 344444 34689999999999998888877777899999999998 444444444333322 689
Q ss_pred cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
||+++.||+|.......+-...+.++ ++... -.+...+..+||++|+||.+++..+
T Consensus 109 P~iVAiNKiDk~~~np~~v~~el~~~-----------------------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 109 PIVVAINKIDKPEANPDKVKQELQEY-----------------------GLVPEEWGGDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred CEEEEEecccCCCCCHHHHHHHHHHc-----------------------CCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence 99999999997643220001112221 11111 1245778899999999999999877
Q ss_pred HHHH
Q psy3651 320 KNTI 323 (334)
Q Consensus 320 ~~~I 323 (334)
.-.-
T Consensus 166 ll~a 169 (509)
T COG0532 166 LLLA 169 (509)
T ss_pred HHHH
Confidence 6543
No 249
>KOG3886|consensus
Probab=97.94 E-value=6e-06 Score=74.54 Aligned_cols=100 Identities=19% Similarity=0.349 Sum_probs=66.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEe-eCcceeeeecCCcccc-----cccccccccCCCeEEEEEeCCCccchh
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI-SNIPFLFVDVGGQRSQ-----RRKWFQCFDSVTSILFLVSSSEYDQTL 212 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~-----r~kw~~~f~~v~~iIfv~dls~~d~~l 212 (334)
+.++.+|+.-+ . ++-.+|+.+....+.+ +++.+.+||.|||+.+ +..-.+-|++++++|||+|++.
T Consensus 22 siiF~ny~a~D--~-~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves----- 93 (295)
T KOG3886|consen 22 SIIFANYIARD--T-RRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES----- 93 (295)
T ss_pred hhhhhhhhhhh--h-hccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----
Confidence 44445554422 1 2223455555555544 5689999999999964 3344678999999999999998
Q ss_pred hcccccccHHHHHHHHHH----HHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 213 VEDRRTNRLHESRNIFDT----IINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 213 ~ed~~~nrl~esl~lf~~----i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
+.++.-+..|+. ++++ .+...++.++.|+||..+
T Consensus 94 ------~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 94 ------REMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred ------hhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhccc
Confidence 444444444444 4443 356779999999998654
No 250
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.93 E-value=1.7e-05 Score=67.59 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=59.3
Q ss_pred cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhh
Q psy3651 186 RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAE 265 (334)
Q Consensus 186 r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~ 265 (334)
|+.+.|..+++|.+|+|+|.++... .. . ..+.. ... ..+.|+++++||+|+..+.. ...
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~--------~~-~--~~l~~-~~~---~~~~p~iiv~NK~Dl~~~~~------~~~ 61 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPEL--------TR-S--RKLER-YVL---ELGKKLLIVLNKADLVPKEV------LEK 61 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcc--------cC-C--HHHHH-HHH---hCCCcEEEEEEhHHhCCHHH------HHH
Confidence 5677888999999999999977421 11 0 11111 121 13579999999999853211 001
Q ss_pred hCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 266 HFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 266 ~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+. .+.. .....++.+||+++.|++++++.+.+.+-
T Consensus 62 -----------------~~--~~~~-----~~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 62 -----------------WK--SIKE-----SEGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred -----------------HH--HHHH-----hCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 00 0110 11234789999999999999998887653
No 251
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.92 E-value=6.8e-05 Score=74.05 Aligned_cols=120 Identities=20% Similarity=0.239 Sum_probs=81.5
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD 229 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~ 229 (334)
.|.-+-+..+.++|+.+++.||+|-|.... +-..-.+.+|.|+||+|.+.. --.+-..+++
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~ 319 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE 319 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence 355677889999999999999999996321 112345789999999999984 1112223333
Q ss_pred HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651 230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT 309 (334)
Q Consensus 230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~ 309 (334)
....+.|+++|.||.||..+.. ...+ + . ......+.+||+++
T Consensus 320 -----~~~~~~~~i~v~NK~DL~~~~~---~~~~-~----------------------------~-~~~~~~i~iSa~t~ 361 (454)
T COG0486 320 -----LLPKKKPIIVVLNKADLVSKIE---LESE-K----------------------------L-ANGDAIISISAKTG 361 (454)
T ss_pred -----hcccCCCEEEEEechhcccccc---cchh-h----------------------------c-cCCCceEEEEecCc
Confidence 1236689999999999976521 1111 1 0 11235788999999
Q ss_pred chHHHHHHHHHHHHHHH
Q psy3651 310 ENIKIVFNAVKNTILHR 326 (334)
Q Consensus 310 ~nI~~vf~~v~~~I~~~ 326 (334)
+|+..+-+.+.......
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99998888877765543
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=97.88 E-value=8.7e-05 Score=74.94 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=56.8
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+......++.++.++.++|++|++.+-+--..-...+|++|+|+|..+- ......+.+..+..
T Consensus 128 rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G-----------~~~qt~e~~~~~~~-- 194 (478)
T PLN03126 128 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-----------PMPQTKEHILLAKQ-- 194 (478)
T ss_pred CCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH--
Confidence 33344334455666788999999999998765555556788999999998862 23344444443322
Q ss_pred CCCCCc-EEEEEeCCCcch
Q psy3651 236 IFRNVS-FILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~p-iiL~lNK~Dl~~ 253 (334)
.+.| +++++||+|+..
T Consensus 195 --~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 195 --VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred --cCCCeEEEEEecccccC
Confidence 3566 888999999854
No 253
>PRK00049 elongation factor Tu; Reviewed
Probab=97.87 E-value=0.00015 Score=71.63 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=54.6
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
|..|+......+..++..+.+.|++|++.+.+--..-...+|++++|+|..+- -.......+..+..
T Consensus 59 rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g-----------~~~qt~~~~~~~~~-- 125 (396)
T PRK00049 59 RGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ-- 125 (396)
T ss_pred cCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CchHHHHHHHHHHH--
Confidence 44455554555555678899999999986654444456789999999998762 12233344433332
Q ss_pred CCCCCcEE-EEEeCCCcch
Q psy3651 236 IFRNVSFI-LFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~pii-L~lNK~Dl~~ 253 (334)
.+.|++ +++||+|+..
T Consensus 126 --~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 126 --VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --cCCCEEEEEEeecCCcc
Confidence 346865 6899999863
No 254
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.86 E-value=5.4e-05 Score=73.81 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=66.5
Q ss_pred cccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccc
Q psy3651 182 QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKT 261 (334)
Q Consensus 182 q~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~ 261 (334)
++.+++.-..+++++++|++|+|+.+++.. +. ..+.+.+ .+.|++|++||+||..+.. .
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---------~~---~~l~~~~-----~~~piilV~NK~DLl~k~~--~-- 108 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS---------LI---PELKRFV-----GGNPVLLVGNKIDLLPKSV--N-- 108 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC---------cc---HHHHHHh-----CCCCEEEEEEchhhCCCCC--C--
Confidence 456777778888999999999999887321 11 1111222 3579999999999865322 1
Q ss_pred hhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 262 SIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 262 ~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
.+.+.+++++.+....- ....++.+||+++.|++++|+.+.+.
T Consensus 109 ---------------~~~~~~~l~~~~k~~g~---~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 109 ---------------LSKIKEWMKKRAKELGL---KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ---------------HHHHHHHHHHHHHHcCC---CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 22333455544332211 11237889999999999999988653
No 255
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.84 E-value=0.00016 Score=68.52 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=64.0
Q ss_pred eecceeEEEEEeeCcceeeeecCCccc----cc-----ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRS----QR-----RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~----~r-----~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
.|.|++..+|..+..++|++||.|--. +| .-....=.=.++|+|++|.|+. +.-.+++...||
T Consensus 201 TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~--------cgy~lE~Q~~L~ 272 (346)
T COG1084 201 TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET--------CGYSLEEQISLL 272 (346)
T ss_pred cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc--------cCCCHHHHHHHH
Confidence 366788888888889999999999642 22 1111111235789999999986 346889999999
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
+++... |. .|+++|+||+|+.
T Consensus 273 ~eIk~~--f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 273 EEIKEL--FK-APIVVVINKIDIA 293 (346)
T ss_pred HHHHHh--cC-CCeEEEEeccccc
Confidence 999764 55 8999999999987
No 256
>PLN03127 Elongation factor Tu; Provisional
Probab=97.84 E-value=0.00021 Score=71.62 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=56.1
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.+..|+......++.++..+.+.|++|++.+-+.-..-...+|++++|+|..+- -..+..+.+..+..
T Consensus 106 ~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g-----------~~~qt~e~l~~~~~ 174 (447)
T PLN03127 106 KARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-----------PMPQTKEHILLARQ 174 (447)
T ss_pred hhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC-----------CchhHHHHHHHHHH
Confidence 3455566666666766778899999999986544333334579999999997752 12233333333322
Q ss_pred hcCCCCCc-EEEEEeCCCcch
Q psy3651 234 NVIFRNVS-FILFLNKTDLLA 253 (334)
Q Consensus 234 ~~~~~~~p-iiL~lNK~Dl~~ 253 (334)
.+.| +|+++||+|+..
T Consensus 175 ----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 175 ----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred ----cCCCeEEEEEEeeccCC
Confidence 3467 578999999864
No 257
>PRK09866 hypothetical protein; Provisional
Probab=97.82 E-value=0.00031 Score=72.34 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=70.4
Q ss_pred cceeeeecCCcccc-cc----cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 172 IPFLFVDVGGQRSQ-RR----KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 172 ~~~~i~DvgGq~~~-r~----kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
..+.+.||+|-..- .+ .-.....++|+|+||+|.... ....+ ..+.+.+-. .-.+.|+++++
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~----------~s~~D-eeIlk~Lkk--~~K~~PVILVV 296 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL----------KSISD-EEVREAILA--VGQSVPLYVLV 296 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC----------CChhH-HHHHHHHHh--cCCCCCEEEEE
Confidence 67889999998652 22 233467899999999998763 11111 122222322 11236999999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
||+|+..+ .. .+.+.+..++...+.... ...-.++.+||+.|.|+..+.+.|..
T Consensus 297 NKIDl~dr----ee--------------ddkE~Lle~V~~~L~q~~---i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 297 NKFDQQDR----NS--------------DDADQVRALISGTLMKGC---ITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EcccCCCc----cc--------------chHHHHHHHHHHHHHhcC---CCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 99997432 10 112333445543322211 11234788999999999999887765
No 258
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.81 E-value=7e-05 Score=53.15 Aligned_cols=45 Identities=33% Similarity=0.531 Sum_probs=33.4
Q ss_pred CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 196 VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 196 v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.++|+|++|+|+. ...++++-+.+|+++.. .|.+.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~--------CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQ--------CGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-T--------TSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCC--------CCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 5789999999996 34689999999999976 588999999999998
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.81 E-value=5e-05 Score=79.34 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=54.9
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
|..|+-.....+..++.++.++||+|++.+-+.-..-...+|++|+|+|.++-- .....+.+.+...
T Consensus 88 rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~----- 154 (632)
T PRK05506 88 QGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASL----- 154 (632)
T ss_pred CCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHH-----
Confidence 444554555667778889999999999876554445567899999999987530 0111222222211
Q ss_pred CCCCCcEEEEEeCCCcch
Q psy3651 236 IFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~ 253 (334)
....+++|++||+|+..
T Consensus 155 -~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 155 -LGIRHVVLAVNKMDLVD 171 (632)
T ss_pred -hCCCeEEEEEEeccccc
Confidence 12357899999999863
No 260
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=0.00012 Score=72.43 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=83.2
Q ss_pred ceeeeecceeEEEEEee-----CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 154 HARKATKGITEFTIVIS-----NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~-----~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
|-|.-|+-....++.++ .+.++++||.|+-.|.---..-+..|.++|+|||.|.= --...+.-+
T Consensus 53 RERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG-----------veAQTlAN~ 121 (603)
T COG0481 53 RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-----------VEAQTLANV 121 (603)
T ss_pred hhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc-----------hHHHHHHHH
Confidence 44445555554444442 37899999999998876556667789999999999973 222333333
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD 308 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d 308 (334)
-..+. .+.-||-|+||+||...-. +.+..-|.+- .++.. -....+||++
T Consensus 122 YlAle----~~LeIiPViNKIDLP~Adp---------------------ervk~eIe~~-iGid~-----~dav~~SAKt 170 (603)
T COG0481 122 YLALE----NNLEIIPVLNKIDLPAADP---------------------ERVKQEIEDI-IGIDA-----SDAVLVSAKT 170 (603)
T ss_pred HHHHH----cCcEEEEeeecccCCCCCH---------------------HHHHHHHHHH-hCCCc-----chheeEeccc
Confidence 23333 3467899999999987533 1111112211 22221 2357899999
Q ss_pred CchHHHHHHHHHHHHH
Q psy3651 309 TENIKIVFNAVKNTIL 324 (334)
Q Consensus 309 ~~nI~~vf~~v~~~I~ 324 (334)
|.||.++++.|.+.|-
T Consensus 171 G~gI~~iLe~Iv~~iP 186 (603)
T COG0481 171 GIGIEDVLEAIVEKIP 186 (603)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 9999999999887653
No 261
>PRK00007 elongation factor G; Reviewed
Probab=97.75 E-value=0.00023 Score=75.22 Aligned_cols=84 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
|.-|+-.....+..++..+.+.||+|+..+-.--..-.+.+|++|+|+|.++- -..+...++..+..
T Consensus 59 rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g-----------~~~qt~~~~~~~~~-- 125 (693)
T PRK00007 59 RGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG-----------VEPQSETVWRQADK-- 125 (693)
T ss_pred CCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC-----------cchhhHHHHHHHHH--
Confidence 44455455667778899999999999876544344456789999999997752 23344566666554
Q ss_pred CCCCCcEEEEEeCCCcchh
Q psy3651 236 IFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~e 254 (334)
.+.|+|++.||+|+..+
T Consensus 126 --~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 126 --YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred --cCCCEEEEEECCCCCCC
Confidence 45789999999998753
No 262
>KOG1144|consensus
Probab=97.73 E-value=0.00019 Score=74.03 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=84.3
Q ss_pred eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+.++||.|+++|-.+....-+.|+.+|.|+|+--= --....||+.++.. +++|||+.+||+|.+-
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~-------rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRM-------RKTPFIVALNKIDRLY 606 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHh-------cCCCeEEeehhhhhhc
Confidence 67899999999998888877889999999999752 11455677777754 7899999999999643
Q ss_pred h--hhccccchhhhhCCCCCCCCccHHHHHH-------HHHHHHHh--hc-------cCCCCCeEEEEEeeecCchHHHH
Q psy3651 254 E--KLRTSKTSIAEHFPEFEGDPQDMQAVQT-------FLLNYFKA--VK-------RDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 254 e--ki~~~~~~l~~~Fp~y~g~~~~~~~~~~-------fi~~~F~~--l~-------~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
. .. +..++.+.+..= ..+++. -|...|.. |+ ....+-+....|||..|+||-.+
T Consensus 607 gwk~~--p~~~i~~~lkkQ------~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdL 678 (1064)
T KOG1144|consen 607 GWKSC--PNAPIVEALKKQ------KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDL 678 (1064)
T ss_pred ccccC--CCchHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHH
Confidence 1 11 233343322110 111222 22223322 11 11124466778999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 316 FNAVKNTILH 325 (334)
Q Consensus 316 f~~v~~~I~~ 325 (334)
+-++...-..
T Consensus 679 l~llv~ltQk 688 (1064)
T KOG1144|consen 679 LLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHH
Confidence 9888765443
No 263
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.71 E-value=0.00021 Score=71.75 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=71.4
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.++|++|++.+-+-...-...+|++++|+|..+-. ......+.+.+.+. +.-.++|+++||+|+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~~qT~ehl~i~~~------lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQPQTSEHLAAVEI------MKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cchhhHHHHHHHHH------cCCCcEEEEEecccc
Confidence 45789999999887665555667899999999998620 00112233322211 122478999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
....- +.+. .++..+++... . .....++.+||+++.||..+++.+.+.+
T Consensus 184 v~~~~------~~~~----------~~ei~~~l~~~----~---~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 184 VKEAQ------AQDQ----------YEEIRNFVKGT----I---ADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred cCHHH------HHHH----------HHHHHHHHHhh----c---cCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 64211 1110 11112222211 1 1356789999999999999888887644
No 264
>PRK00098 GTPase RsgA; Reviewed
Probab=97.68 E-value=0.00011 Score=69.68 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=53.8
Q ss_pred ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCC
Q psy3651 193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG 272 (334)
Q Consensus 193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g 272 (334)
..++|.+++|+|+++.+ .....+..|-..+.. .++|++|++||+||...+. . ...
T Consensus 78 aaniD~vllV~d~~~p~----------~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~---~~~------- 132 (298)
T PRK00098 78 AANVDQAVLVFAAKEPD----------FSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE--E---ARE------- 132 (298)
T ss_pred eecCCEEEEEEECCCCC----------CCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH--H---HHH-------
Confidence 48999999999998752 112222222222222 5689999999999853211 0 000
Q ss_pred CCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 273 DPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 273 ~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
....+. ...+.++.+||+++.|++++++.+..
T Consensus 133 -----------~~~~~~------~~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 133 -----------LLALYR------AIGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred -----------HHHHHH------HCCCeEEEEeCCCCccHHHHHhhccC
Confidence 011111 12356889999999999999987753
No 265
>KOG1145|consensus
Probab=97.63 E-value=0.00022 Score=71.62 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=79.5
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+|.++.|.||.|+..|..+...=-.-+|.|++||+..| .-+...++.....- ..+.|+++.+||+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD-----------GVmpQT~EaIkhAk----~A~VpiVvAinKi 263 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD-----------GVMPQTLEAIKHAK----SANVPIVVAINKI 263 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC-----------CccHhHHHHHHHHH----hcCCCEEEEEecc
Confidence 57899999999999998888776677899999999887 44555444443332 3789999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
|..+..+.+...+|..+ | ..+. .-...+.+..+||+.|+|+..+-+++.-
T Consensus 264 Dkp~a~pekv~~eL~~~-----g----------------i~~E-~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 264 DKPGANPEKVKRELLSQ-----G----------------IVVE-DLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCCCCCHHHHHHHHHHc-----C----------------ccHH-HcCCceeEEEeecccCCChHHHHHHHHH
Confidence 98765441111122211 0 0000 1124688899999999999988777654
No 266
>KOG1490|consensus
Probab=97.62 E-value=0.00015 Score=72.09 Aligned_cols=122 Identities=17% Similarity=0.248 Sum_probs=81.9
Q ss_pred eCcceeeeecCCccc---ccccccccc------cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651 170 SNIPFLFVDVGGQRS---QRRKWFQCF------DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV 240 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~---~r~kw~~~f------~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~ 240 (334)
+-..|++.||+|--. +.+..+..- .=-.+|+|+.|+|+- ...+..+.+++|++|- |.|.|.
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~--------CGySva~QvkLfhsIK--pLFaNK 282 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM--------CGYSVAAQVKLYHSIK--PLFANK 282 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh--------hCCCHHHHHHHHHHhH--HHhcCC
Confidence 336789999988542 222222111 112689999999985 4478999999999994 679999
Q ss_pred cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
|+||++||+|+.. .+++.+- .++..+.+. ...++.+..||..+.+||-.|=...+
T Consensus 283 ~~IlvlNK~D~m~------~edL~~~----------~~~ll~~~~---------~~~~v~v~~tS~~~eegVm~Vrt~AC 337 (620)
T KOG1490|consen 283 VTILVLNKIDAMR------PEDLDQK----------NQELLQTII---------DDGNVKVVQTSCVQEEGVMDVRTTAC 337 (620)
T ss_pred ceEEEeecccccC------ccccCHH----------HHHHHHHHH---------hccCceEEEecccchhceeeHHHHHH
Confidence 9999999999853 2222210 011111111 12457889999999999998888888
Q ss_pred HHHHHH
Q psy3651 321 NTILHR 326 (334)
Q Consensus 321 ~~I~~~ 326 (334)
+.++..
T Consensus 338 e~LLa~ 343 (620)
T KOG1490|consen 338 EALLAA 343 (620)
T ss_pred HHHHHH
Confidence 777754
No 267
>COG1159 Era GTPase [General function prediction only]
Probab=97.59 E-value=0.00057 Score=64.12 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=71.2
Q ss_pred EeeCcceeeeecCCcccccccccc--------cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651 168 VISNIPFLFVDVGGQRSQRRKWFQ--------CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN 239 (334)
Q Consensus 168 ~~~~~~~~i~DvgGq~~~r~kw~~--------~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~ 239 (334)
+.++..+-+.||+|-...+.+--. -+.+||.|+||+|..+. ...-++ ...+.+.+ .+
T Consensus 50 t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~---------~~~~d~--~il~~lk~----~~ 114 (298)
T COG1159 50 TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG---------WGPGDE--FILEQLKK----TK 114 (298)
T ss_pred EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc---------CCccHH--HHHHHHhh----cC
Confidence 345788899999998776554332 35789999999999983 022111 12222222 46
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
+|++|++||+|....+. .-.++.+ +.... -.-...+.+||+.+.|+..+.+.+
T Consensus 115 ~pvil~iNKID~~~~~~--~l~~~~~-----------------~~~~~--------~~f~~ivpiSA~~g~n~~~L~~~i 167 (298)
T COG1159 115 TPVILVVNKIDKVKPKT--VLLKLIA-----------------FLKKL--------LPFKEIVPISALKGDNVDTLLEII 167 (298)
T ss_pred CCeEEEEEccccCCcHH--HHHHHHH-----------------HHHhh--------CCcceEEEeeccccCCHHHHHHHH
Confidence 79999999999766532 1111111 11111 011257899999999999988777
Q ss_pred HHH
Q psy3651 320 KNT 322 (334)
Q Consensus 320 ~~~ 322 (334)
...
T Consensus 168 ~~~ 170 (298)
T COG1159 168 KEY 170 (298)
T ss_pred HHh
Confidence 654
No 268
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.56 E-value=0.00068 Score=67.02 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=94.2
Q ss_pred cccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 151 Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|+-+-|.-|+=...+.+.+++.++.|.||.|+..|----.....=||+|+.+||.++ ..|.+..-..+.
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkK 115 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKK 115 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHH
Confidence 443445555555567788899999999999999876655666778999999999998 566666666666
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecC
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDT 309 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~ 309 (334)
.+. .+.+-|++.||+|....+. +.+.+-....|.++..... -.+++.+.||..|
T Consensus 116 Al~----~gL~PIVVvNKiDrp~Arp---------------------~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G 170 (603)
T COG1217 116 ALA----LGLKPIVVINKIDRPDARP---------------------DEVVDEVFDLFVELGATDEQLDFPIVYASARNG 170 (603)
T ss_pred HHH----cCCCcEEEEeCCCCCCCCH---------------------HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc
Confidence 655 3456678899999877653 2333344566777765433 5678888888765
Q ss_pred c----------hHHHHHHHHHHH
Q psy3651 310 E----------NIKIVFNAVKNT 322 (334)
Q Consensus 310 ~----------nI~~vf~~v~~~ 322 (334)
. ++.-+|+.|.+.
T Consensus 171 ~a~~~~~~~~~~m~pLfe~I~~h 193 (603)
T COG1217 171 TASLDPEDEADDMAPLFETILDH 193 (603)
T ss_pred eeccCccccccchhHHHHHHHHh
Confidence 3 455555555443
No 269
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.54 E-value=0.00045 Score=68.17 Aligned_cols=112 Identities=19% Similarity=0.138 Sum_probs=71.8
Q ss_pred EEEEeeCcceeeeecCCccccc---------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 165 FTIVISNIPFLFVDVGGQRSQR---------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 165 ~~~~~~~~~~~i~DvgGq~~~r---------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
....+.+..|.++||||-.... .+-..-.+.||+||||+|.-.= -..+-..+.+-+.
T Consensus 44 ~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G-----------it~~D~~ia~~Lr--- 109 (444)
T COG1160 44 GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG-----------ITPADEEIAKILR--- 109 (444)
T ss_pred ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CCHHHHHHHHHHH---
Confidence 3455677889999999988422 2233456789999999998761 1111112222222
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
-.+.|++|+.||+|-..... ...++ -++.- -.++.+||..|.|+.++
T Consensus 110 -~~~kpviLvvNK~D~~~~e~-----~~~ef----------------------yslG~-----g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 110 -RSKKPVILVVNKIDNLKAEE-----LAYEF----------------------YSLGF-----GEPVPISAEHGRGIGDL 156 (444)
T ss_pred -hcCCCEEEEEEcccCchhhh-----hHHHH----------------------HhcCC-----CCceEeehhhccCHHHH
Confidence 14589999999999753211 11221 11111 12678999999999999
Q ss_pred HHHHHHHH
Q psy3651 316 FNAVKNTI 323 (334)
Q Consensus 316 f~~v~~~I 323 (334)
.++|...+
T Consensus 157 ld~v~~~l 164 (444)
T COG1160 157 LDAVLELL 164 (444)
T ss_pred HHHHHhhc
Confidence 99988765
No 270
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.53 E-value=0.00037 Score=59.46 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=52.8
Q ss_pred ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCC
Q psy3651 193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG 272 (334)
Q Consensus 193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g 272 (334)
.+++|.|++|+|.++... ..-. .+...+.. ...+.|+++++||+|+..+. .+..
T Consensus 6 l~~aD~il~VvD~~~p~~--------~~~~----~i~~~l~~-~~~~~p~ilVlNKiDl~~~~------~~~~------- 59 (157)
T cd01858 6 IDSSDVVIQVLDARDPMG--------TRCK----HVEEYLKK-EKPHKHLIFVLNKCDLVPTW------VTAR------- 59 (157)
T ss_pred hhhCCEEEEEEECCCCcc--------ccCH----HHHHHHHh-ccCCCCEEEEEEchhcCCHH------HHHH-------
Confidence 578999999999988511 1111 12222221 12357999999999985431 1111
Q ss_pred CCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 273 DPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 273 ~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
++.. |.. ......+.+||+.+.|+..+.+.+.+.
T Consensus 60 ----------~~~~-~~~-----~~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 60 ----------WVKI-LSK-----EYPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ----------HHHH-Hhc-----CCcEEEEEeeccccccHHHHHHHHHHH
Confidence 1111 111 122335779999999999998888764
No 271
>PRK12289 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00029 Score=68.47 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=55.6
Q ss_pred ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651 191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF 270 (334)
Q Consensus 191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y 270 (334)
....++|.|++|+|+.+.+- ....+...+. .+ . ..++|++|++||+||..+.- +..
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~------~~~~LdR~L~---~a-~---~~~ip~ILVlNK~DLv~~~~------~~~----- 140 (352)
T PRK12289 85 PPVANADQILLVFALAEPPL------DPWQLSRFLV---KA-E---STGLEIVLCLNKADLVSPTE------QQQ----- 140 (352)
T ss_pred hhhhcCCEEEEEEECCCCCC------CHHHHHHHHH---HH-H---HCCCCEEEEEEchhcCChHH------HHH-----
Confidence 35789999999999987520 0012222222 11 1 25689999999999854210 111
Q ss_pred CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+ .+.|.. ..+.++++||+++.|+.++++.+.+
T Consensus 141 ------------~-~~~~~~------~g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 141 ------------W-QDRLQQ------WGYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred ------------H-HHHHHh------cCCeEEEEEcCCCCCHHHHhhhhcc
Confidence 1 112211 2356789999999999999988875
No 272
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00023 Score=69.43 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=86.5
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
|.|-.|+-+....|+.....+.|+|+.|+|.+-+..+.-.+.+|+.|+|+|.++-. ...--.......|.+-+-..
T Consensus 67 RerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~t--- 142 (428)
T COG5256 67 RERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLART--- 142 (428)
T ss_pred HhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHh---
Confidence 45667787888888888899999999999999988888899999999999998741 00000011233344333322
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
+.-..+|++.||+|+..- ....+ +++.+-+......+.. ..+.+.+..+||..|.|+.
T Consensus 143 ---lGi~~lIVavNKMD~v~w----de~rf--------------~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 143 ---LGIKQLIVAVNKMDLVSW----DEERF--------------EEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLT 200 (428)
T ss_pred ---cCCceEEEEEEccccccc----CHHHH--------------HHHHHHHHHHHHHcCC-CccCCeEEecccccCCccc
Confidence 233478999999998641 11111 2222222221111221 2246889999999999986
Q ss_pred H
Q psy3651 314 I 314 (334)
Q Consensus 314 ~ 314 (334)
+
T Consensus 201 ~ 201 (428)
T COG5256 201 K 201 (428)
T ss_pred c
Confidence 5
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.46 E-value=0.00014 Score=76.99 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=53.8
Q ss_pred EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
++.++..+.+|||+|+..+...-...++.+|++|+|+|..+- ...+...++....+ .+.|+++|+
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g-----------~~~~t~~~~~~~~~----~~~p~ivvi 145 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG-----------VMPQTETVLRQALK----ENVKPVLFI 145 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC-----------CCccHHHHHHHHHH----cCCCEEEEE
Confidence 445678899999999998877777789999999999998762 12233444544333 356888999
Q ss_pred eCCCcch
Q psy3651 247 NKTDLLA 253 (334)
Q Consensus 247 NK~Dl~~ 253 (334)
||+|...
T Consensus 146 NKiD~~~ 152 (720)
T TIGR00490 146 NKVDRLI 152 (720)
T ss_pred EChhccc
Confidence 9999864
No 274
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.43 E-value=0.00074 Score=64.75 Aligned_cols=37 Identities=19% Similarity=0.455 Sum_probs=28.4
Q ss_pred CcceeeeecCCc----ccccc---cccccccCCCeEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQ----RSQRR---KWFQCFDSVTSILFLVSSSE 207 (334)
Q Consensus 171 ~~~~~i~DvgGq----~~~r~---kw~~~f~~v~~iIfv~dls~ 207 (334)
.+.+++|||+|+ ...+. +....+++||++++|+|+++
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 367999999998 33333 33345899999999999985
No 275
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.39 E-value=0.00074 Score=63.44 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=52.6
Q ss_pred eeecceeEEEEEe--eC--cceeeeecCC--------------------------ccccccccccccc--CCCeEEEEEe
Q psy3651 157 KATKGITEFTIVI--SN--IPFLFVDVGG--------------------------QRSQRRKWFQCFD--SVTSILFLVS 204 (334)
Q Consensus 157 ~~T~Gi~~~~~~~--~~--~~~~i~DvgG--------------------------q~~~r~kw~~~f~--~v~~iIfv~d 204 (334)
.+|+++......+ ++ +++.+|||+| ++..+..+...+. .+++++|+++
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 4566665444333 34 6799999999 3333344435555 4788999998
Q ss_pred CCCccchhhcccccccHHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 205 SSEYDQTLVEDRRTNRLHES-RNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 205 ls~~d~~l~ed~~~nrl~es-l~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
.+.. .+... +++++.+.. .+|+++|+||+|++.
T Consensus 124 ~~~~-----------~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~ 157 (276)
T cd01850 124 PTGH-----------GLKPLDIEFMKRLSK-----RVNIIPVIAKADTLT 157 (276)
T ss_pred CCCC-----------CCCHHHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence 7763 22222 666666643 479999999999855
No 276
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.38 E-value=0.0024 Score=56.70 Aligned_cols=126 Identities=9% Similarity=0.013 Sum_probs=66.1
Q ss_pred cceeeeecCCccccccccccc-----ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQC-----FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~-----f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
..+.+||+.|.......-..| +.+++.+|+|.+ .++.+.-..+-..+.. .+.|+++|+
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--------------~~~~~~d~~~~~~l~~---~~~~~ilV~ 114 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--------------TRFSSNDVKLAKAIQC---MGKKFYFVR 114 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--------------CCCCHHHHHHHHHHHH---hCCCEEEEE
Confidence 478999999986432222223 677898888743 2233333333333332 257999999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeee--cCchHHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAV--DTENIKIVFNAVKNTI 323 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~--d~~nI~~vf~~v~~~I 323 (334)
||+|+....- .....+ ....+...+-+++...+...... ..-.++.+||. .+.++..+.+.+...+
T Consensus 115 nK~D~~~~~~--~~~~~~---------~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 115 TKVDRDLSNE--QRSKPR---------SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred ecccchhhhh--hccccc---------cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 9999843110 000000 00112223333333333222111 22357889998 4578777777777666
Q ss_pred HH
Q psy3651 324 LH 325 (334)
Q Consensus 324 ~~ 325 (334)
-.
T Consensus 184 ~~ 185 (197)
T cd04104 184 PA 185 (197)
T ss_pred hH
Confidence 53
No 277
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.27 E-value=0.00084 Score=63.40 Aligned_cols=88 Identities=16% Similarity=0.051 Sum_probs=54.9
Q ss_pred ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651 191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF 270 (334)
Q Consensus 191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y 270 (334)
....++|.+++|+|+.+.. .+...++.. +..+.. .++|++|++||+||..+.- . ..
T Consensus 74 ~i~anvD~vllV~d~~~p~------~s~~~ldr~---L~~~~~----~~ip~iIVlNK~DL~~~~~---~---~~----- 129 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPF------FNPRLLDRY---LVAAEA----AGIEPVIVLTKADLLDDEE---E---EL----- 129 (287)
T ss_pred eEEEeCCEEEEEEEcCCCC------CCHHHHHHH---HHHHHH----cCCCEEEEEEHHHCCChHH---H---HH-----
Confidence 4578999999999998751 011222222 222221 4689999999999854310 0 00
Q ss_pred CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
....+. ...+.++.+||+++.|+++++..+..
T Consensus 130 -------------~~~~~~------~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 130 -------------ELVEAL------ALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -------------HHHHHH------hCCCeEEEEECCCCccHHHHHhhhcc
Confidence 000111 12356789999999999999888764
No 278
>KOG1489|consensus
Probab=97.23 E-value=0.0036 Score=59.33 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=74.6
Q ss_pred eeeecceeEEEEEeeCc-ceeeeecCCccc----ccc---cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 156 RKATKGITEFTIVISNI-PFLFVDVGGQRS----QRR---KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~-~~~i~DvgGq~~----~r~---kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
-.|++|. +.+++. .+.+-|+.|--. -|- +.....+-++.++||+|+|.... .+-++.-..+
T Consensus 231 L~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL 299 (366)
T KOG1489|consen 231 LRPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLL 299 (366)
T ss_pred eccccce----eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHH
Confidence 3566773 223332 388999987543 222 23344567999999999999721 1233333333
Q ss_pred HHHHHh-hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651 228 FDTIIN-NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA 306 (334)
Q Consensus 228 f~~i~~-~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA 306 (334)
+.++-. ...+.+.|.++|+||+|+.+.. . +++.+....+. +-.++.+||
T Consensus 300 ~~ELe~yek~L~~rp~liVaNKiD~~eae----~---------------------~~l~~L~~~lq-----~~~V~pvsA 349 (366)
T KOG1489|consen 300 IEELELYEKGLADRPALIVANKIDLPEAE----K---------------------NLLSSLAKRLQ-----NPHVVPVSA 349 (366)
T ss_pred HHHHHHHhhhhccCceEEEEeccCchhHH----H---------------------HHHHHHHHHcC-----CCcEEEeee
Confidence 333321 1345677999999999995431 1 12222222221 125789999
Q ss_pred ecCchHHHHHHHHHH
Q psy3651 307 VDTENIKIVFNAVKN 321 (334)
Q Consensus 307 ~d~~nI~~vf~~v~~ 321 (334)
+.++++..+.+.+..
T Consensus 350 ~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 350 KSGEGLEELLNGLRE 364 (366)
T ss_pred ccccchHHHHHHHhh
Confidence 999999998877654
No 279
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.18 E-value=0.00032 Score=64.55 Aligned_cols=132 Identities=18% Similarity=0.180 Sum_probs=63.1
Q ss_pred ceeeeecCCcccccccccccc--------cCCCeEEEEEeCCCccchhhcccccccHHHH-HHHHHHHHhhcCCCCCcEE
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCF--------DSVTSILFLVSSSEYDQTLVEDRRTNRLHES-RNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f--------~~v~~iIfv~dls~~d~~l~ed~~~nrl~es-l~lf~~i~~~~~~~~~pii 243 (334)
.+-++|++||-..-..|...- ...-+++|++|.+-.... ..+-.+ +.-+...++ -+.|.|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~-------~~f~s~~L~s~s~~~~----~~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDP-------SKFVSSLLLSLSIMLR----LELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSH-------HHHHHHHHHHHHHHHH----HTSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccCh-------hhHHHHHHHHHHHHhh----CCCCEE
Confidence 467999999998766665544 466799999998865210 222222 222222232 468999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHH----HHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAV----QTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~----~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
.++||+|+..+.. ...-+++.+. ...... ..-+.+....+-........++..|+.+++++.+++..|
T Consensus 161 nvlsK~Dl~~~~~----~~~l~~~~d~----~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 161 NVLSKIDLLSKYL----EFILEWFEDP----DSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp EEE--GGGS-HHH----HHHHHHHHSH----HHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred EeeeccCcccchh----HHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 9999999987432 1122222111 001110 011111111221111222378999999999999999888
Q ss_pred HHHH
Q psy3651 320 KNTI 323 (334)
Q Consensus 320 ~~~I 323 (334)
-+.+
T Consensus 233 d~a~ 236 (238)
T PF03029_consen 233 DKAN 236 (238)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 280
>KOG1707|consensus
Probab=97.07 E-value=0.0011 Score=67.03 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=76.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccH-HHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL-HESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl-~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+...+.|++.....|-.-.+=.+.+++|..|++.++.. +..++ ..++-++++.... ..++||||++||.
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~-------T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES-------TVDRISTKWLPLIRQLFGD--YHETPVILVGNKS 125 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH-------HhhhhhhhhhhhhhcccCC--CccCCEEEEeecc
Confidence 344668899855554544467789999999999998851 11222 2234444443321 3679999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+-.... . ..+....=|-..|.++.. ++.|||+.-.|+.++|....+.|+.
T Consensus 126 d~~~~~~--~----------------s~e~~~~pim~~f~EiEt-------ciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 126 DNGDNEN--N----------------SDEVNTLPIMIAFAEIET-------CIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred CCccccc--c----------------chhHHHHHHHHHhHHHHH-------HHhhhhhhhhhhHhhhhhhhheeec
Confidence 9865422 1 111112233444444433 5789999999999999888877764
No 281
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.06 E-value=0.0045 Score=54.71 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=78.9
Q ss_pred ecceeEEEEEeeCcceeeeecCCccccc-----------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQR-----------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-----------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
|.........+++..+.++||+|-.... +.+..+..++++||||+++..+. ..-.+.++.
T Consensus 36 T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t---------~~d~~~l~~ 106 (196)
T cd01852 36 TKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFT---------EEEEQAVET 106 (196)
T ss_pred ccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcC---------HHHHHHHHH
Confidence 4445555666688899999999965421 11223457899999999987742 233455666
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE-E--
Q psy3651 228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF-T-- 304 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~-t-- 304 (334)
+.+++..... .++++++|+.|.... ..+.++.. ....+++..-. .. ...+..+- .
T Consensus 107 l~~~fg~~~~--~~~ivv~T~~d~l~~------~~~~~~~~----------~~~~~l~~l~~---~c-~~r~~~f~~~~~ 164 (196)
T cd01852 107 LQELFGEKVL--DHTIVLFTRGDDLEG------GTLEDYLE----------NSCEALKRLLE---KC-GGRYVAFNNKAK 164 (196)
T ss_pred HHHHhChHhH--hcEEEEEECccccCC------CcHHHHHH----------hccHHHHHHHH---Hh-CCeEEEEeCCCC
Confidence 6666543222 378899999995432 23444321 01112222111 11 11221221 2
Q ss_pred eeecCchHHHHHHHHHHHHHH
Q psy3651 305 TAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 305 sA~d~~nI~~vf~~v~~~I~~ 325 (334)
++.++.++.++++.|.+++..
T Consensus 165 ~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 165 GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred cchhHHHHHHHHHHHHHHHHh
Confidence 267788999999999888765
No 282
>COG2262 HflX GTPases [General function prediction only]
Probab=97.05 E-value=0.0076 Score=58.92 Aligned_cols=122 Identities=21% Similarity=0.282 Sum_probs=77.5
Q ss_pred cceeEEEEEee-CcceeeeecCCcccccccccc-cc-------cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 160 KGITEFTIVIS-NIPFLFVDVGGQRSQRRKWFQ-CF-------DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 160 ~Gi~~~~~~~~-~~~~~i~DvgGq~~~r~kw~~-~f-------~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
.......+.+. +..+-+-||-|=-+.-.-|.- -| ..+|.++.|+|.|+.+- ...++.+...+.+
T Consensus 227 LdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~-------~~~~~~v~~vL~e 299 (411)
T COG2262 227 LDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEI-------LEKLEAVEDVLAE 299 (411)
T ss_pred ccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhH-------HHHHHHHHHHHHH
Confidence 33334455555 578889999886554444431 23 26899999999999621 1344444444444
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+ .....|+|+++||+|+..... .+.. +... .+ ...++||+++.
T Consensus 300 l----~~~~~p~i~v~NKiD~~~~~~-----~~~~-------------------------~~~~--~~-~~v~iSA~~~~ 342 (411)
T COG2262 300 I----GADEIPIILVLNKIDLLEDEE-----ILAE-------------------------LERG--SP-NPVFISAKTGE 342 (411)
T ss_pred c----CCCCCCEEEEEecccccCchh-----hhhh-------------------------hhhc--CC-CeEEEEeccCc
Confidence 4 345689999999999754311 0100 0001 11 36889999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTILH 325 (334)
Q Consensus 311 nI~~vf~~v~~~I~~ 325 (334)
|++.+.+.+.+.+..
T Consensus 343 gl~~L~~~i~~~l~~ 357 (411)
T COG2262 343 GLDLLRERIIELLSG 357 (411)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999888887763
No 283
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.97 E-value=0.0093 Score=57.11 Aligned_cols=133 Identities=16% Similarity=0.227 Sum_probs=83.3
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
-.|.+|+... ..+..|.|=|+.|--.-. -....+.+-+..+++|+|++..|.. +-.++...+.
T Consensus 194 L~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~-------dp~~~~~~i~ 263 (369)
T COG0536 194 LVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGR-------DPIEDYQTIR 263 (369)
T ss_pred ccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCC-------CHHHHHHHHH
Confidence 4678887654 345678899998764311 1233445678999999999987421 2344444444
Q ss_pred HHHHhh-cCCCCCcEEEEEeCCCcch--hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEe
Q psy3651 229 DTIINN-VIFRNVSFILFLNKTDLLA--EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTT 305 (334)
Q Consensus 229 ~~i~~~-~~~~~~piiL~lNK~Dl~~--eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~ts 305 (334)
.++-.. +.+.+.|.+|++||+|+.. +.+ ..+. +++.+. ......++ +|
T Consensus 264 ~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~----~~~~-----------------~~l~~~-------~~~~~~~~-IS 314 (369)
T COG0536 264 NELEKYSPKLAEKPRIVVLNKIDLPLDEEEL----EELK-----------------KALAEA-------LGWEVFYL-IS 314 (369)
T ss_pred HHHHHhhHHhccCceEEEEeccCCCcCHHHH----HHHH-----------------HHHHHh-------cCCCccee-ee
Confidence 444333 5678889999999999533 221 1111 122211 11122222 99
Q ss_pred eecCchHHHHHHHHHHHHHHHh
Q psy3651 306 AVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 306 A~d~~nI~~vf~~v~~~I~~~~ 327 (334)
|.++++++.+...+.+.+-+..
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999998877654
No 284
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.0043 Score=64.08 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=81.3
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccc------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRR------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|+--.+..+..++..+++.|..|--+... .-.+|. .++|.||-|+|.++. +.++.+.-+
T Consensus 37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL-------------eRnLyltlQ 103 (653)
T COG0370 37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL-------------ERNLYLTLQ 103 (653)
T ss_pred eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH-------------HHHHHHHHH
Confidence 44444667778889999999999877432 334454 367999999999985 344555555
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.. -+.|+++++|+.|..+++ ...+.. ..+.+ .-++++..|+|+.|.
T Consensus 104 LlE----~g~p~ilaLNm~D~A~~~----Gi~ID~-----------------------~~L~~--~LGvPVv~tvA~~g~ 150 (653)
T COG0370 104 LLE----LGIPMILALNMIDEAKKR----GIRIDI-----------------------EKLSK--LLGVPVVPTVAKRGE 150 (653)
T ss_pred HHH----cCCCeEEEeccHhhHHhc----CCcccH-----------------------HHHHH--HhCCCEEEEEeecCC
Confidence 554 467899999999987652 222211 11111 246789999999999
Q ss_pred hHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKN 321 (334)
Q Consensus 311 nI~~vf~~v~~ 321 (334)
|++++.+.+.+
T Consensus 151 G~~~l~~~i~~ 161 (653)
T COG0370 151 GLEELKRAIIE 161 (653)
T ss_pred CHHHHHHHHHH
Confidence 99998887765
No 285
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.95 E-value=0.0034 Score=53.37 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCccchhhcccccccHHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCc
Q psy3651 197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD-TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275 (334)
Q Consensus 197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~-~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~ 275 (334)
|.+|+|+|.++... .. .. ++. ..+. ..+.|+++++||+|+..+.. +..
T Consensus 1 Dvvl~VvD~~~p~~--------~~-~~---~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~------~~~---------- 49 (155)
T cd01849 1 DVILEVLDARDPLG--------TR-SP---DIERVLIK---EKGKKLILVLNKADLVPKEV------LRK---------- 49 (155)
T ss_pred CEEEEEEeccCCcc--------cc-CH---HHHHHHHh---cCCCCEEEEEechhcCCHHH------HHH----------
Confidence 57999999987511 11 11 111 2222 24689999999999854310 111
Q ss_pred cHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 276 ~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
++ ..|... ....++.+||+++.++..+.+.+.+..
T Consensus 50 -------~~-~~~~~~-----~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 50 -------WL-AYLRHS-----YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred -------HH-HHHHhh-----CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 111111 123468899999999999998887653
No 286
>PTZ00416 elongation factor 2; Provisional
Probab=96.94 E-value=0.0012 Score=71.19 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=52.4
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+.||+|+..+-.--....+.+|++|+|+|.++- -......+|+.+.. .+.|+|+|+||+|
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g-----------~~~~t~~~~~~~~~----~~~p~iv~iNK~D 155 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG-----------VCVQTETVLRQALQ----ERIRPVLFINKVD 155 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC-----------cCccHHHHHHHHHH----cCCCEEEEEEChh
Confidence 56799999999988766666678899999999998872 23334456666655 3579999999999
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
No 287
>PRK12288 GTPase RsgA; Reviewed
Probab=96.91 E-value=0.0039 Score=60.55 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=53.4
Q ss_pred cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCC
Q psy3651 194 DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGD 273 (334)
Q Consensus 194 ~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~ 273 (334)
.|+|.++.|++++.. .+...++..+... . ..++|++|++||+||.... ....+..
T Consensus 119 ANvD~vlIV~s~~p~-------~s~~~Ldr~L~~a----~---~~~i~~VIVlNK~DL~~~~---~~~~~~~-------- 173 (347)
T PRK12288 119 ANIDQIVIVSAVLPE-------LSLNIIDRYLVAC----E---TLGIEPLIVLNKIDLLDDE---GRAFVNE-------- 173 (347)
T ss_pred EEccEEEEEEeCCCC-------CCHHHHHHHHHHH----H---hcCCCEEEEEECccCCCcH---HHHHHHH--------
Confidence 579999999997643 1113333333222 2 2568999999999996431 0000111
Q ss_pred CccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 274 PQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 274 ~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
++ +.|.. ..+.++.+||+++.|+.++++.+..
T Consensus 174 ---------~~-~~y~~------~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 174 ---------QL-DIYRN------IGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred ---------HH-HHHHh------CCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 11 11111 2356889999999999999998865
No 288
>PRK13796 GTPase YqeH; Provisional
Probab=96.77 E-value=0.0059 Score=59.69 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=52.6
Q ss_pred CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCcc
Q psy3651 197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQD 276 (334)
Q Consensus 197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~ 276 (334)
..|++|+|+.++.. ++.. .+.... .+.|++|++||+||..... .
T Consensus 71 ~lIv~VVD~~D~~~---------s~~~---~L~~~~-----~~kpviLViNK~DLl~~~~--~----------------- 114 (365)
T PRK13796 71 ALVVNVVDIFDFNG---------SWIP---GLHRFV-----GNNPVLLVGNKADLLPKSV--K----------------- 114 (365)
T ss_pred cEEEEEEECccCCC---------chhH---HHHHHh-----CCCCEEEEEEchhhCCCcc--C-----------------
Confidence 48999999998731 2211 222222 3578999999999964321 1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 277 MQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 277 ~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
.+.+.+++...+....- ....++.+||+++.|++++++.+.+.
T Consensus 115 ~~~i~~~l~~~~k~~g~---~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 115 KNKVKNWLRQEAKELGL---RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHHHHHHHhcCC---CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 11222344433222110 11247899999999999999998653
No 289
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.75 E-value=0.005 Score=52.17 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=63.9
Q ss_pred eeecCCcccccccccccc----cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 176 FVDVGGQRSQRRKWFQCF----DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 176 i~DvgGq~~~r~kw~~~f----~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
++||.|---+.+.+.+.. .+|+.|++|.|.++..... .-. |.. .| +.|+|=|.||+|+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~---------pP~---fa~-----~f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF---------PPG---FAS-----MF-NKPVIGVITKIDL 101 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC---------Cch---hhc-----cc-CCCEEEEEECccC
Confidence 589999887776655443 4899999999999863211 110 111 12 4699999999999
Q ss_pred c--hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 252 L--AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 252 ~--~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
. .+.+ +.|.++++. +.-+. ++.+||.+++||+++.+++.
T Consensus 102 ~~~~~~i---------------------~~a~~~L~~-------aG~~~--if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 102 PSDDANI---------------------ERAKKWLKN-------AGVKE--IFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ccchhhH---------------------HHHHHHHHH-------cCCCC--eEEEECCCCcCHHHHHHHHh
Confidence 8 3322 222222222 11233 48999999999999988775
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.74 E-value=0.002 Score=69.62 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=53.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.++||.|+..+-.--....+.+|++|+|+|.++- -......+|+.+.. .+.|+++|+||+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G-----------v~~~t~~~~~~~~~----~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC-----------CcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence 57789999999998877667778899999999998872 33344556766654 5689999999999
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 291
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.67 E-value=0.0078 Score=48.28 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=45.2
Q ss_pred EEEEEeeCcceeeeecCCcccccc---------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRR---------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~---------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
...+.+.+..+.++|++|-..... ......+.++++|||+|.++. .-....++++.+ +
T Consensus 39 ~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~-----------~~~~~~~~~~~l-~- 105 (116)
T PF01926_consen 39 YGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP-----------ITEDDKNILREL-K- 105 (116)
T ss_dssp EEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH-----------SHHHHHHHHHHH-H-
T ss_pred eeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC-----------CCHHHHHHHHHH-h-
Confidence 345566788889999999754211 122334789999999996652 112233444444 2
Q ss_pred cCCCCCcEEEEEeC
Q psy3651 235 VIFRNVSFILFLNK 248 (334)
Q Consensus 235 ~~~~~~piiL~lNK 248 (334)
.+.|+++++||
T Consensus 106 ---~~~~~i~v~NK 116 (116)
T PF01926_consen 106 ---NKKPIILVLNK 116 (116)
T ss_dssp ---TTSEEEEEEES
T ss_pred ---cCCCEEEEEcC
Confidence 66899999998
No 292
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.61 E-value=0.0033 Score=52.61 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=30.4
Q ss_pred ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
.+++|++++|+|..+... ..-.+- ...+... ..+.|+++++||+|+..
T Consensus 9 i~~aD~vl~ViD~~~p~~--------~~~~~l----~~~l~~~-~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 9 VERSDIVVQIVDARNPLL--------FRPPDL----ERYVKEV-DPRKKNILLLNKADLLT 56 (141)
T ss_pred HhhCCEEEEEEEccCCcc--------cCCHHH----HHHHHhc-cCCCcEEEEEechhcCC
Confidence 468999999999877521 111111 1222211 25689999999999854
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.60 E-value=0.0023 Score=68.14 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=52.1
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
++..+.++||+|+..+...-....+.+|++|+|+|..+- .......++..+... +.|.|+|+||+
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g-----------~~~~t~~~~~~~~~~----~~~~iv~iNK~ 149 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG-----------VMPQTETVLRQALRE----RVKPVLFINKV 149 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC-----------CCccHHHHHHHHHHc----CCCeEEEEECc
Confidence 367889999999998766666778899999999998762 223445556554432 45789999999
Q ss_pred Ccchh
Q psy3651 250 DLLAE 254 (334)
Q Consensus 250 Dl~~e 254 (334)
|+...
T Consensus 150 D~~~~ 154 (731)
T PRK07560 150 DRLIK 154 (731)
T ss_pred hhhcc
Confidence 98643
No 294
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.55 E-value=0.0029 Score=54.77 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=52.7
Q ss_pred ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651 191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF 270 (334)
Q Consensus 191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y 270 (334)
....++|.|++|+|.++.... .-.+ +.+. ..+.|+++++||+|+..+.. +..
T Consensus 15 ~~i~~aD~il~v~D~~~~~~~--------~~~~---i~~~------~~~k~~ilVlNK~Dl~~~~~------~~~----- 66 (171)
T cd01856 15 EKLKLVDLVIEVRDARIPLSS--------RNPL---LEKI------LGNKPRIIVLNKADLADPKK------TKK----- 66 (171)
T ss_pred HHHhhCCEEEEEeeccCccCc--------CChh---hHhH------hcCCCEEEEEehhhcCChHH------HHH-----
Confidence 346789999999999865211 1011 1111 23468999999999853311 101
Q ss_pred CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
++ +.+.. ....++.+||+++.|++++.+.+...+
T Consensus 67 ------------~~-~~~~~------~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 67 ------------WL-KYFES------KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ------------HH-HHHHh------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11 01111 113467899999999999998888765
No 295
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.54 E-value=0.0053 Score=54.84 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.6
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
...+++|||++|+||+++|+++.+..
T Consensus 170 ~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 170 EKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35688999999999999999998654
No 296
>KOG1191|consensus
Probab=96.35 E-value=0.024 Score=56.66 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=78.4
Q ss_pred cceeEEEEEeeCcceeeeecCCcccccccccc---------cccCCCeEEEEEeC--CCccchhhcccccccHHHHHHHH
Q psy3651 160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQ---------CFDSVTSILFLVSS--SEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~---------~f~~v~~iIfv~dl--s~~d~~l~ed~~~nrl~esl~lf 228 (334)
....+..|+++|+++.+.||+|-|.++..-.. -...+|.|++|+|. ++..+ -.......
T Consensus 304 RDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s----------d~~i~~~l 373 (531)
T KOG1191|consen 304 RDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES----------DLKIARIL 373 (531)
T ss_pred hhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc----------chHHHHHH
Confidence 33457889999999999999999984433221 23568999999999 44311 11111111
Q ss_pred HHHH-----hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE
Q psy3651 229 DTII-----NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF 303 (334)
Q Consensus 229 ~~i~-----~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~ 303 (334)
+..- ..+.....+++++.||.|+... + |++++.+.. |+.. .....+..+.
T Consensus 374 ~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~-~-----------~~~~~~~~~------~~~~-------~~~~~~~i~~ 428 (531)
T KOG1191|consen 374 ETEGVGLVVIVNKMEKQRIILVANKSDLVSK-I-----------PEMTKIPVV------YPSA-------EGRSVFPIVV 428 (531)
T ss_pred HHhccceEEEeccccccceEEEechhhccCc-c-----------ccccCCcee------cccc-------ccCcccceEE
Confidence 1111 1112245799999999998553 2 112221110 0000 0011244555
Q ss_pred -EeeecCchHHHHHHHHHHHHHHH
Q psy3651 304 -TTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 304 -tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+|++++++++.+...+.++....
T Consensus 429 ~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred EeeechhhhHHHHHHHHHHHHHHh
Confidence 99999999999998888877654
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.35 E-value=0.022 Score=50.90 Aligned_cols=25 Identities=4% Similarity=-0.065 Sum_probs=22.0
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
...++.+||+++.||+++|+++.+.
T Consensus 181 ~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 181 EAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999764
No 298
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.32 E-value=0.012 Score=55.20 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=53.6
Q ss_pred ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651 191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF 270 (334)
Q Consensus 191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y 270 (334)
...+.+|.||+|+|..+... .+- . .+...+ .+.|+++|+||+|+..+.. ...+
T Consensus 17 ~~l~~aDvVl~V~Dar~p~~--------~~~-~---~i~~~l-----~~kp~IiVlNK~DL~~~~~------~~~~---- 69 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARIPLS--------SRN-P---MIDEIR-----GNKPRLIVLNKADLADPAV------TKQW---- 69 (276)
T ss_pred HHHhhCCEEEEEEeCCCCCC--------CCC-h---hHHHHH-----CCCCEEEEEEccccCCHHH------HHHH----
Confidence 34678999999999876411 110 1 112222 2579999999999853210 1110
Q ss_pred CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
.+++ .. ....++.+||+++.+++.+.+.+.+.+-.
T Consensus 70 ----------~~~~----~~------~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 70 ----------LKYF----EE------KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ----------HHHH----HH------cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0111 11 12346889999999999998888776543
No 299
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.026 Score=54.40 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=77.7
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+.+.-..|.-...+|-+-||+|++.+-|....=-+.|+++|.++|.-. .-++.+.. ...|.. .+.
T Consensus 73 TIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTrR-Hs~I~s--LLG 138 (431)
T COG2895 73 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTRR-HSFIAS--LLG 138 (431)
T ss_pred eEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhHH-HHHHHH--HhC
Confidence 4445555666678999999999999887776666677899999999843 22222221 111222 122
Q ss_pred CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecCchHH
Q psy3651 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIK 313 (334)
Q Consensus 239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~~nI~ 313 (334)
=..++|..||+||..-. ++..+=|+..|..+...-. +...+..+||..|.||-
T Consensus 139 IrhvvvAVNKmDLvdy~----------------------e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 139 IRHVVVAVNKMDLVDYS----------------------EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CcEEEEEEeeecccccC----------------------HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 24689999999985531 1222345566666544322 55678899999999985
No 300
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.0093 Score=62.79 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=71.8
Q ss_pred CCCCCCcccccceeeeecceeEEEEEeeC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccH
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVISN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl 221 (334)
-||.|.+ +.|.-|+.....++.+++ ..++++||.|+-.|-.--..-.+-+|++|.|+|..+ --.
T Consensus 50 ~D~~e~E----qeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~ 114 (697)
T COG0480 50 MDWMEQE----QERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVE 114 (697)
T ss_pred CCCcHHH----HhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------Cee
Confidence 4566654 346666666677788885 999999999998876655556677899999999988 566
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 222 ~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
..+-..|++... .+.|.++|.||+|...
T Consensus 115 ~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 115 PQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred ecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 677778888766 5789999999999755
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.97 E-value=0.066 Score=51.67 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=65.4
Q ss_pred eeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 169 ISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 169 ~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
..+..+.|.||+|-+... .....-+|.+++|.+...- ..++... ..++. ..-++++||
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~g----------d~iq~~k---~gi~E------~aDIiVVNK 203 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAG----------DELQGIK---KGIME------LADLIVINK 203 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCch----------HHHHHHH---hhhhh------hhheEEeeh
Confidence 357889999999988322 2246679999999763322 1222211 11222 123899999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
.|+....- . +.....+...+.-+... .....+++.+||+++.||.++++.+.+..
T Consensus 204 aDl~~~~~------a--------------~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 204 ADGDNKTA------A--------------RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred hcccchhH------H--------------HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99865311 0 01111222222111111 11224688999999999999999998754
No 302
>KOG1532|consensus
Probab=95.96 E-value=0.014 Score=54.48 Aligned_cols=137 Identities=17% Similarity=0.287 Sum_probs=71.2
Q ss_pred cceeeeecCCcccccccccc-------cc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQ-------CF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~-------~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
..+-++||.||-. ---|.. -+ ..-+.|+||+|...... ...+-..+-.-.+|+- -.+.|+
T Consensus 116 ~~~~liDTPGQIE-~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~-------p~tFMSNMlYAcSily---ktklp~ 184 (366)
T KOG1532|consen 116 FDYVLIDTPGQIE-AFTWSASGSIITETLASSFPTVVVYVVDTPRSTS-------PTTFMSNMLYACSILY---KTKLPF 184 (366)
T ss_pred cCEEEEcCCCceE-EEEecCCccchHhhHhhcCCeEEEEEecCCcCCC-------chhHHHHHHHHHHHHH---hccCCe
Confidence 3455778888753 223432 12 13478999999876421 1223333333334432 356799
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHH-HHHHHHHHHHhhc--cC-CCCCeEEEEEeeecCchHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQA-VQTFLLNYFKAVK--RD-EKKPLFHHFTTAVDTENIKIVFNA 318 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~-~~~fi~~~F~~l~--~~-~~~~i~~~~tsA~d~~nI~~vf~~ 318 (334)
|+++||+|+..... ..+|..||..-....++ -..|+...-..+. -. --+++...-+||.+|.|..+.|..
T Consensus 185 ivvfNK~Dv~d~~f------a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~a 258 (366)
T KOG1532|consen 185 IVVFNKTDVSDSEF------ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTA 258 (366)
T ss_pred EEEEecccccccHH------HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHH
Confidence 99999999865433 22232222110000000 0012221111110 00 013456778999999999999999
Q ss_pred HHHHHHH
Q psy3651 319 VKNTILH 325 (334)
Q Consensus 319 v~~~I~~ 325 (334)
|...+-.
T Consensus 259 v~~~vdE 265 (366)
T KOG1532|consen 259 VDESVDE 265 (366)
T ss_pred HHHHHHH
Confidence 9876654
No 303
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.016 Score=57.16 Aligned_cols=75 Identities=13% Similarity=0.317 Sum_probs=60.5
Q ss_pred eEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 163 TEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 163 ~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
+..+|++.+..+++.||.|++.+..-.-.-+--||++|.|+|.+. .--...++||+ +|. ++++||
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLfe-Vcr---lR~iPI 136 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLFE-VCR---LRDIPI 136 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHHH-HHh---hcCCce
Confidence 367889999999999999999877655555668999999999987 34456677775 454 478999
Q ss_pred EEEEeCCCcc
Q psy3651 243 ILFLNKTDLL 252 (334)
Q Consensus 243 iL~lNK~Dl~ 252 (334)
+=|.||.|..
T Consensus 137 ~TFiNKlDR~ 146 (528)
T COG4108 137 FTFINKLDRE 146 (528)
T ss_pred EEEeeccccc
Confidence 9999999964
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.94 E-value=0.048 Score=53.95 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=26.4
Q ss_pred cceeeeecCCcc----cccc---cccccccCCCeEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQR----SQRR---KWFQCFDSVTSILFLVSSSE 207 (334)
Q Consensus 172 ~~~~i~DvgGq~----~~r~---kw~~~f~~v~~iIfv~dls~ 207 (334)
..+++||++|.. ..+. +.....++++++++|+|.++
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 678999999942 2233 33334789999999999983
No 305
>KOG0458|consensus
Probab=95.67 E-value=0.03 Score=56.91 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=83.6
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
|.|.-|..+-...|+-....+.+.|..|++-|-.-.+.=-..+|+.|+|+|.+-- ..-.--...+...|-..+...+
T Consensus 237 RerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L-- 313 (603)
T KOG0458|consen 237 RERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL-- 313 (603)
T ss_pred hhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--
Confidence 4445555555677777788999999999988877666666678999999998841 1100001224555555555443
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.-..+|+..||+|+-.= ....+... ......|+++.+ .-.+..+.+..+|+..|+|+.
T Consensus 314 ----gi~qlivaiNKmD~V~W----sq~RF~eI----------k~~l~~fL~~~~----gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 314 ----GISQLIVAINKMDLVSW----SQDRFEEI----------KNKLSSFLKESC----GFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred ----CcceEEEEeecccccCc----cHHHHHHH----------HHHHHHHHHHhc----CcccCCcceEecccccCCccc
Confidence 34679999999998541 11111110 111222443331 122356789999999999985
Q ss_pred HH
Q psy3651 314 IV 315 (334)
Q Consensus 314 ~v 315 (334)
..
T Consensus 372 k~ 373 (603)
T KOG0458|consen 372 KI 373 (603)
T ss_pred cc
Confidence 43
No 306
>PRK01889 GTPase RsgA; Reviewed
Probab=95.65 E-value=0.069 Score=52.04 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=51.3
Q ss_pred cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCC
Q psy3651 192 CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE 271 (334)
Q Consensus 192 ~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~ 271 (334)
.-.|+|.+++|+++... .+..+++..+...+ -.+++.+|++||+||... . . .
T Consensus 109 iaANvD~vliV~s~~p~-------~~~~~ldr~L~~a~-------~~~i~piIVLNK~DL~~~-~--~--~--------- 160 (356)
T PRK01889 109 IAANVDTVFIVCSLNHD-------FNLRRIERYLALAW-------ESGAEPVIVLTKADLCED-A--E--E--------- 160 (356)
T ss_pred EEEeCCEEEEEEecCCC-------CChhHHHHHHHHHH-------HcCCCEEEEEEChhcCCC-H--H--H---------
Confidence 35799999999999521 11122333222221 256778999999999643 1 0 0
Q ss_pred CCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 272 GDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 272 g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
.+ +.+..+ ...+.++.+||+++.++..+..++.
T Consensus 161 -----------~~-~~~~~~----~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 161 -----------KI-AEVEAL----APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -----------HH-HHHHHh----CCCCcEEEEECCCCccHHHHHHHhh
Confidence 00 011222 1235678899999999999888775
No 307
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.62 E-value=0.034 Score=52.42 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=53.9
Q ss_pred ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651 191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF 270 (334)
Q Consensus 191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y 270 (334)
...+.+|.||+|+|..+... .+- ..+...+ .+.|+++++||+||..... +..+
T Consensus 20 ~~l~~aDvIL~VvDar~p~~--------~~~----~~l~~~~-----~~kp~iiVlNK~DL~~~~~------~~~~---- 72 (287)
T PRK09563 20 ENLKLVDVVIEVLDARIPLS--------SEN----PMIDKII-----GNKPRLLILNKSDLADPEV------TKKW---- 72 (287)
T ss_pred HHhhhCCEEEEEEECCCCCC--------CCC----hhHHHHh-----CCCCEEEEEEchhcCCHHH------HHHH----
Confidence 34678999999999876411 111 1122222 2579999999999853210 1111
Q ss_pred CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
.+|+ .. ....++.+||+++.+++.+.+.+...+-.
T Consensus 73 ----------~~~~----~~------~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 73 ----------IEYF----EE------QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ----------HHHH----HH------cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1111 11 12346789999999999999888776543
No 308
>COG0218 Predicted GTPase [General function prediction only]
Probab=95.60 E-value=0.23 Score=44.27 Aligned_cols=127 Identities=15% Similarity=0.251 Sum_probs=68.9
Q ss_pred eeccee--EEEEEeeCcceeeeecCCc------cccccccc----cccc---CCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 158 ATKGIT--EFTIVISNIPFLFVDVGGQ------RSQRRKWF----QCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 158 ~T~Gi~--~~~~~~~~~~~~i~DvgGq------~~~r~kw~----~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
.|-|.+ ...|.+.+. +.+.|+.|= ...+.+|. +|++ +..+++.++|+-..-.-. | .
T Consensus 55 ktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~--D------~ 125 (200)
T COG0218 55 KTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDL--D------R 125 (200)
T ss_pred CCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHH--H------H
Confidence 444544 223444332 889999873 33456675 4554 467888888887651110 0 1
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEE
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHH 302 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~ 302 (334)
+.++++.+ .+.|+++++||+|.... ....+ ....+++. +.........+.
T Consensus 126 em~~~l~~-------~~i~~~vv~tK~DKi~~------~~~~k--------------~l~~v~~~---l~~~~~~~~~~~ 175 (200)
T COG0218 126 EMIEFLLE-------LGIPVIVVLTKADKLKK------SERNK--------------QLNKVAEE---LKKPPPDDQWVV 175 (200)
T ss_pred HHHHHHHH-------cCCCeEEEEEccccCCh------hHHHH--------------HHHHHHHH---hcCCCCccceEE
Confidence 33333322 56899999999995432 11110 01122222 111112121277
Q ss_pred EEeeecCchHHHHHHHHHHHH
Q psy3651 303 FTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 303 ~tsA~d~~nI~~vf~~v~~~I 323 (334)
.+|+..+.|++++-..|...+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 788888899888877766554
No 309
>KOG1423|consensus
Probab=95.57 E-value=0.077 Score=50.33 Aligned_cols=134 Identities=17% Similarity=0.246 Sum_probs=76.6
Q ss_pred EeeCcceeeeecCCccccccccc------------ccccCCCeEEEEEeCCCccchhhcccccccHH-HHHHHHHHHHhh
Q psy3651 168 VISNIPFLFVDVGGQRSQRRKWF------------QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH-ESRNIFDTIINN 234 (334)
Q Consensus 168 ~~~~~~~~i~DvgGq~~~r~kw~------------~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~-esl~lf~~i~~~ 234 (334)
+-+...+-++||.|--+...... +-...+|.|+.|+|.++-- +.++ ..+...+.
T Consensus 116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr---------~~l~p~vl~~l~~---- 182 (379)
T KOG1423|consen 116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR---------TPLHPRVLHMLEE---- 182 (379)
T ss_pred ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc---------CccChHHHHHHHH----
Confidence 33567889999999765332221 1235789999999999731 1111 11222222
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC---CC-CCe----EEEEEee
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD---EK-KPL----FHHFTTA 306 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~---~~-~~i----~~~~tsA 306 (334)
..+.|-+|++||.|...+|. .--++.+.+.+ |. .....-=+.++|...... +. -++ .+|++||
T Consensus 183 --ys~ips~lvmnkid~~k~k~--~Ll~l~~~Lt~--g~---l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa 253 (379)
T KOG1423|consen 183 --YSKIPSILVMNKIDKLKQKR--LLLNLKDLLTN--GE---LAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA 253 (379)
T ss_pred --HhcCCceeeccchhcchhhh--HHhhhHHhccc--cc---cchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence 24578899999999887764 33334333211 11 111122334444433211 01 112 3788999
Q ss_pred ecCchHHHHHHHHHHHH
Q psy3651 307 VDTENIKIVFNAVKNTI 323 (334)
Q Consensus 307 ~d~~nI~~vf~~v~~~I 323 (334)
+.|+||+++=+++..+.
T Consensus 254 L~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 254 LYGEGIKDLKQYLMSQA 270 (379)
T ss_pred ccccCHHHHHHHHHhcC
Confidence 99999999988887643
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.52 E-value=0.13 Score=48.79 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=61.5
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+-|.||.|-.. ........+|.++++.....- .+.......+ .+.|.++++||+
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~-------------~el~~~~~~l------~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG-------------DDLQGIKAGL------MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc-------------HHHHHHHHHH------hhhccEEEEEcc
Confidence 468889999988542 122345667787777432221 1111111222 346779999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+.... ....+.. .+......+... ......++.+||++++|+.++++++.+..
T Consensus 183 Dl~~~~---~~~~~~~-----------------~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 183 DGEGAT---NVTIARL-----------------MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred cccchh---HHHHHHH-----------------HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 986531 0000000 000000111111 11223478999999999999999998863
No 311
>KOG0705|consensus
Probab=95.45 E-value=0.037 Score=55.98 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=80.0
Q ss_pred EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
+..+..-+.+.|.||.. -..|-.-++++|||+.+-+. +.++....++..+.....-...|+++++
T Consensus 72 v~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~----------~s~q~v~~l~~~l~~~r~r~~i~l~lvg 136 (749)
T KOG0705|consen 72 VDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDE----------QSFQAVQALAHEMSSYRNISDLPLILVG 136 (749)
T ss_pred eeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccc----------cCHHHHHHHHhhcccccccccchHHhhc
Confidence 33456788899999833 23456789999999999997 7777777777777666555667888887
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
.+-=+ ..+. ..+.. ...+. ++. ...+.+.+++|||+.|.|+..+|+.+...++..
T Consensus 137 tqd~i-S~~~--~rv~~-------------da~~r------~l~---~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 137 TQDHI-SAKR--PRVIT-------------DDRAR------QLS---AQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred Ccchh-hccc--ccccc-------------hHHHH------HHH---HhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 76433 2222 11111 11111 111 123567789999999999999999998876643
No 312
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.1 Score=51.66 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=82.9
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.|..|+-+....+...+..+.+.|+.|.+.+-+--..-..+.+.+++|++..+= -....-|.+...+.
T Consensus 33 KRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdl---- 100 (447)
T COG3276 33 KRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDL---- 100 (447)
T ss_pred hcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHh----
Confidence 355566666777777788999999999987654444445578999999998652 01233344443332
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
+.....++++||+|+..+.. -.. .+++--..+. -....++.+||+.+++|.+
T Consensus 101 --lgi~~giivltk~D~~d~~r--~e~---------------------~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~ 152 (447)
T COG3276 101 --LGIKNGIIVLTKADRVDEAR--IEQ---------------------KIKQILADLS---LANAKIFKTSAKTGRGIEE 152 (447)
T ss_pred --cCCCceEEEEeccccccHHH--HHH---------------------HHHHHHhhcc---cccccccccccccCCCHHH
Confidence 34456799999999875421 010 1111101111 1234568899999999999
Q ss_pred HHHHHHHHH
Q psy3651 315 VFNAVKNTI 323 (334)
Q Consensus 315 vf~~v~~~I 323 (334)
+=+.+.+..
T Consensus 153 Lk~~l~~L~ 161 (447)
T COG3276 153 LKNELIDLL 161 (447)
T ss_pred HHHHHHHhh
Confidence 988888876
No 313
>KOG3887|consensus
Probab=94.85 E-value=0.6 Score=43.08 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=74.6
Q ss_pred cceeeeecCCccccccc---ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh--cCCCCCcEEEEE
Q psy3651 172 IPFLFVDVGGQRSQRRK---WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN--VIFRNVSFILFL 246 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~k---w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~--~~~~~~piiL~l 246 (334)
+.+++||.+||-.+-.- ....|+++-|.|||+|.-+ ...+++.-+...+.. ..-+++.+=+|.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi 142 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI 142 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence 57899999999875332 2345899999999999876 345566555554443 234567888999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
.|.|-+.+-. +...-.+ -.+.+.+-+... .+ .+-.+.+|.||-.|. .|-+.|..|...++.
T Consensus 143 HKvDGLsdd~--kietqrd----------I~qr~~d~l~d~--gl---e~v~vsf~LTSIyDH-SIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 143 HKVDGLSDDF--KIETQRD----------IHQRTNDELADA--GL---EKVQVSFYLTSIYDH-SIFEAFSKVVQKLIP 203 (347)
T ss_pred EeccCCchhh--hhhhHHH----------HHHHhhHHHHhh--hh---ccceEEEEEeeecch-HHHHHHHHHHHHHhh
Confidence 9999766422 1100000 011111111111 11 124577888998886 677778777765553
No 314
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.79 E-value=0.22 Score=45.25 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=41.0
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc-EEEEEeC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS-FILFLNK 248 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p-iiL~lNK 248 (334)
++.++.++|++|.- ... ....+.++.++||+|.+.-. ......++..+.. .+.| +++++||
T Consensus 81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~-----------~~~~~~i~~~l~~----~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGF-----------EMETFEFLNILQV----HGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCC-----------CHHHHHHHHHHHH----cCCCeEEEEEec
Confidence 56788999999864 222 22347899999999987631 1112233333222 2356 5569999
Q ss_pred CCcch
Q psy3651 249 TDLLA 253 (334)
Q Consensus 249 ~Dl~~ 253 (334)
.|+..
T Consensus 143 ~D~~~ 147 (225)
T cd01882 143 LDLFK 147 (225)
T ss_pred cccCC
Confidence 99863
No 315
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=94.39 E-value=0.27 Score=47.09 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=36.4
Q ss_pred eeEEEEEeeCcceeeeecCC----ccccc---ccccccccCCCeEEEEEeCCCcc
Q psy3651 162 ITEFTIVISNIPFLFVDVGG----QRSQR---RKWFQCFDSVTSILFLVSSSEYD 209 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgG----q~~~r---~kw~~~f~~v~~iIfv~dls~~d 209 (334)
....-+.+++..+|+.|+.| +.+-| +.-...-++||.||+|+|+....
T Consensus 100 ~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 100 PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred cccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 33445677899999999984 44444 45667789999999999999654
No 316
>KOG0468|consensus
Probab=94.13 E-value=0.093 Score=54.35 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=55.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
..-+++.||.|+-.+-.-...-++-+|+++.|+|..+ .-|-..-.+.+..++ .+.|+++++||.|
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq----~~~~i~vviNKiD 260 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQ----NRLPIVVVINKVD 260 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHh----ccCcEEEEEehhH
Confidence 4778999999999988777777888999999999998 455555556666665 4579999999999
Q ss_pred cchh
Q psy3651 251 LLAE 254 (334)
Q Consensus 251 l~~e 254 (334)
.+..
T Consensus 261 RLil 264 (971)
T KOG0468|consen 261 RLIL 264 (971)
T ss_pred HHHH
Confidence 7654
No 317
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.11 E-value=0.15 Score=48.76 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=75.4
Q ss_pred cceeeeecCCcccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
..+.+.|..|++-. -....+++ |++|+|++.++... .....|-+..++= + .-..+|++-||
T Consensus 86 R~VSfVDaPGHe~L---MATMLsGAAlMDgAlLvIaANEpcP-------QPQT~EHl~AleI-i-----gik~iiIvQNK 149 (415)
T COG5257 86 RRVSFVDAPGHETL---MATMLSGAALMDGALLVIAANEPCP-------QPQTREHLMALEI-I-----GIKNIIIVQNK 149 (415)
T ss_pred EEEEEeeCCchHHH---HHHHhcchhhhcceEEEEecCCCCC-------CCchHHHHHHHhh-h-----ccceEEEEecc
Confidence 35779999999853 44556664 89999999988621 1333444433322 2 22468999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+||..+. .-++. +++.++|++... ..+.++..+||..+.||+.+++.+.+.|-
T Consensus 150 IDlV~~E-----~AlE~-----------y~qIk~FvkGt~-------Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 150 IDLVSRE-----RALEN-----------YEQIKEFVKGTV-------AENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred cceecHH-----HHHHH-----------HHHHHHHhcccc-------cCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 9996532 11222 345555555431 13456889999999999999999988774
No 318
>COG1162 Predicted GTPases [General function prediction only]
Probab=93.61 E-value=0.3 Score=46.37 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=56.0
Q ss_pred cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCC
Q psy3651 194 DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGD 273 (334)
Q Consensus 194 ~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~ 273 (334)
.+++-+|+|+++.+.+ .+.+.++..+-..+. .++.-+|++||+||..+-- ... .+
T Consensus 78 ~n~d~~iiIvs~~~P~------~~~~~ldR~Lv~ae~-------~gi~pvIvlnK~DL~~~~~--~~~--~~-------- 132 (301)
T COG1162 78 ANNDQAIIVVSLVDPD------FNTNLLDRYLVLAEA-------GGIEPVIVLNKIDLLDDEE--AAV--KE-------- 132 (301)
T ss_pred cccceEEEEEeccCCC------CCHHHHHHHHHHHHH-------cCCcEEEEEEccccCcchH--HHH--HH--------
Confidence 3477888888888863 334556655554433 5676777899999976421 000 01
Q ss_pred CccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 274 PQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 274 ~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
. +.... .-.+..+++||+++.++.++...+..
T Consensus 133 ----------~----~~~y~--~~gy~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 133 ----------L----LREYE--DIGYPVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred ----------H----HHHHH--hCCeeEEEecCcCcccHHHHHHHhcC
Confidence 0 11111 24677899999999999998887765
No 319
>KOG0464|consensus
Probab=93.55 E-value=0.019 Score=56.30 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=64.9
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
|.|.-|+.-....|+++|.++.++||.|+-.+|---..|.+-.|+++-|+|.|.= --...+..|.+.-.
T Consensus 84 rergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasag-----------ve~qtltvwrqadk 152 (753)
T KOG0464|consen 84 RERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG-----------VEAQTLTVWRQADK 152 (753)
T ss_pred HhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC-----------cccceeeeehhccc
Confidence 4455555555678889999999999999999998888999999999999999873 22344555555422
Q ss_pred hcCCCCCcEEEEEeCCCcch
Q psy3651 234 NVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~ 253 (334)
-++|-+.|+||+|...
T Consensus 153 ----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 153 ----FKIPAHCFINKMDKLA 168 (753)
T ss_pred ----cCCchhhhhhhhhhhh
Confidence 3578888999999643
No 320
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=93.52 E-value=0.38 Score=43.14 Aligned_cols=84 Identities=14% Similarity=0.282 Sum_probs=52.2
Q ss_pred ecceeEEEEEeeCcceeeeecCCccccc-------ccccc----cccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQR-------RKWFQ----CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-------~kw~~----~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
|.........+.+..+.++||+|--.-+ +.... +-.+.+++|||+.+..+. +.-...+++
T Consensus 36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t---------~~~~~~l~~ 106 (212)
T PF04548_consen 36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFT---------EEDREVLEL 106 (212)
T ss_dssp -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-S---------HHHHHHHHH
T ss_pred ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcch---------HHHHHHHHH
Confidence 4455555667788999999999843211 11222 345899999999999662 345567777
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 228 FDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+.+++...... .++|+++..|-+.
T Consensus 107 l~~~FG~~~~k--~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 107 LQEIFGEEIWK--HTIVVFTHADELE 130 (212)
T ss_dssp HHHHHCGGGGG--GEEEEEEEGGGGT
T ss_pred HHHHccHHHHh--HhhHHhhhccccc
Confidence 88877765443 5788888877544
No 321
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=92.36 E-value=0.71 Score=44.15 Aligned_cols=75 Identities=11% Similarity=0.191 Sum_probs=43.9
Q ss_pred EeeCcceeeeecCCccccccc---c---cccc---cCCCeEEEEEeCCCccchhhcccccccH-HHHHHHHHHHHhhcCC
Q psy3651 168 VISNIPFLFVDVGGQRSQRRK---W---FQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRL-HESRNIFDTIINNVIF 237 (334)
Q Consensus 168 ~~~~~~~~i~DvgGq~~~r~k---w---~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl-~esl~lf~~i~~~~~~ 237 (334)
...+.++.++||+|....... . ..+| .+.++||||..+.... . ... ...++.+.+++.....
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~-------~~~DkqlLk~Iqe~FG~~iw 153 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-V-------DTLDGQVIRAITDSFGKDIW 153 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-C-------CHHHHHHHHHHHHHhhhhhh
Confidence 347889999999998753211 1 1111 2689999997766530 0 111 2234444444432211
Q ss_pred CCCcEEEEEeCCCcc
Q psy3651 238 RNVSFILFLNKTDLL 252 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~ 252 (334)
.++||++++.|..
T Consensus 154 --~~~IVVfTh~d~~ 166 (313)
T TIGR00991 154 --RKSLVVLTHAQFS 166 (313)
T ss_pred --ccEEEEEECCccC
Confidence 3689999999964
No 322
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=92.20 E-value=0.28 Score=41.51 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=43.0
Q ss_pred CcceeeeecCCccc----ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 171 NIPFLFVDVGGQRS----QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 171 ~~~~~i~DvgGq~~----~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
...+.++|+.|-.. ....|..|...++++|||++.+.. -.-.+ ...+.+.... ....+++|+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~----------~~~~~-~~~l~~~~~~---~~~~~i~V~ 165 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD----------LTESD-MEFLKQMLDP---DKSRTIFVL 165 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST----------GGGHH-HHHHHHHHTT---TCSSEEEEE
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc----------cchHH-HHHHHHHhcC---CCCeEEEEE
Confidence 35688999998854 336688899999999999998874 11122 3333333332 333489999
Q ss_pred eCC
Q psy3651 247 NKT 249 (334)
Q Consensus 247 NK~ 249 (334)
||.
T Consensus 166 nk~ 168 (168)
T PF00350_consen 166 NKA 168 (168)
T ss_dssp E-G
T ss_pred cCC
Confidence 984
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=91.83 E-value=0.18 Score=47.61 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=56.8
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.|--|+......++..+..+-..|+.|+..+-+..+.--...|+.|+|++.+|=-. ....|-+.+-.+
T Consensus 57 k~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm--------PqTrEHiLlarq--- 125 (394)
T COG0050 57 KARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM--------PQTREHILLARQ--- 125 (394)
T ss_pred hhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC--------Ccchhhhhhhhh---
Confidence 445556655556666678899999999999876655555556799999999998311 122232222221
Q ss_pred hcCCCCC-cEEEEEeCCCcch
Q psy3651 234 NVIFRNV-SFILFLNKTDLLA 253 (334)
Q Consensus 234 ~~~~~~~-piiL~lNK~Dl~~ 253 (334)
-.. -+++|+||+|+..
T Consensus 126 ----vGvp~ivvflnK~Dmvd 142 (394)
T COG0050 126 ----VGVPYIVVFLNKVDMVD 142 (394)
T ss_pred ----cCCcEEEEEEecccccC
Confidence 234 5889999999975
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=91.27 E-value=0.81 Score=42.15 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=43.6
Q ss_pred cceeeeecCCcccc-------------cccccccccC-CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 172 IPFLFVDVGGQRSQ-------------RRKWFQCFDS-VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 172 ~~~~i~DvgGq~~~-------------r~kw~~~f~~-v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
..+.++|++|-... +.+-..|.++ .+.|++|+|...- -.-.+++.+.+.+- .
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d----------~~~~d~l~ia~~ld----~ 190 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD----------LANSDALKLAKEVD----P 190 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC----------CCchhHHHHHHHHH----H
Confidence 68999999998521 1233456774 4588899987541 11123344444432 2
Q ss_pred CCCcEEEEEeCCCcchh
Q psy3651 238 RNVSFILFLNKTDLLAE 254 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~e 254 (334)
.+.++++|+||.|...+
T Consensus 191 ~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 191 QGERTIGVITKLDLMDE 207 (240)
T ss_pred cCCcEEEEEECCCCCCc
Confidence 46799999999998653
No 325
>KOG0461|consensus
Probab=91.26 E-value=0.91 Score=43.96 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=71.9
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.++|..|+.+--+-.+---.-.|..+.|+|+..=-| ....|.+-+=+-.|. ..+++.||+|+
T Consensus 70 lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~Q--------tQtAEcLiig~~~c~-------klvvvinkid~ 134 (522)
T KOG0461|consen 70 LQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQ--------TQTAECLIIGELLCK-------KLVVVINKIDV 134 (522)
T ss_pred ceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccc--------cccchhhhhhhhhcc-------ceEEEEecccc
Confidence 667999999998754333322233477889999886422 344555554444443 36788899998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC----chHHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT----ENIKIVFNAVKNTILHR 326 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~----~nI~~vf~~v~~~I~~~ 326 (334)
..|-- ..+.+.+. ..-+++..++. .-+.+.++..+||.+| +.|.++-+.+...|.+-
T Consensus 135 lpE~q--r~ski~k~--------------~kk~~KtLe~t--~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 135 LPENQ--RASKIEKS--------------AKKVRKTLEST--GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred ccchh--hhhHHHHH--------------HHHHHHHHHhc--CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 76522 22333321 11111111111 1124577899999999 77888777777776643
No 326
>COG3596 Predicted GTPase [General function prediction only]
Probab=90.89 E-value=1.1 Score=42.12 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=82.8
Q ss_pred eCcceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 170 SNIPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
++..+.+||+.|-.. .|.+...+....|.|+.+.+..|.+- .-...++..++-.- -+.++
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-----------~~d~~f~~dVi~~~--~~~~~ 151 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-----------GTDEDFLRDVIILG--LDKRV 151 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-----------cCCHHHHHHHHHhc--cCcee
Confidence 457899999998776 55667778888999999999999643 33345566665431 23789
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+++.|..|.... ...| ++.|.. ...+.+.|+.++-..+.+.-..--++.+.++...-|++.+...+...
T Consensus 152 i~~VtQ~D~a~p--------~~~W--~~~~~~-p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 152 LFVVTQADRAEP--------GREW--DSAGHQ-PSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred EEEEehhhhhcc--------cccc--ccccCC-CCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHh
Confidence 999999995431 1111 333332 22344567777755554321111123344457788999988888776
Q ss_pred HH
Q psy3651 323 IL 324 (334)
Q Consensus 323 I~ 324 (334)
+-
T Consensus 221 lp 222 (296)
T COG3596 221 LP 222 (296)
T ss_pred Cc
Confidence 54
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=89.92 E-value=0.35 Score=45.76 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.5
Q ss_pred CeEEEEEeeecCchHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
...++.+||++++|++.+.+|+.+
T Consensus 263 ~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 263 EIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999999976
No 328
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=89.81 E-value=0.94 Score=35.78 Aligned_cols=53 Identities=8% Similarity=0.005 Sum_probs=35.4
Q ss_pred cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 188 KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 188 kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
....+++++++++.|++.++. +++... |...+... .-.+.|+++++||.|+..
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~----------~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDR----------DSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred ccccccCCCCEEEEEEEccCH----------HHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 345677889999999999886 444322 44333322 224578999999999844
No 329
>KOG0467|consensus
Probab=89.48 E-value=0.51 Score=49.75 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=53.7
Q ss_pred EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
...++..+.++|..|+-.+..--..--+=+|+.+..+|.-+ .--.....+.++. |..+...+|++
T Consensus 67 ~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvve-----------gv~~qt~~vlrq~----~~~~~~~~lvi 131 (887)
T KOG0467|consen 67 LLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVE-----------GVCSQTYAVLRQA----WIEGLKPILVI 131 (887)
T ss_pred cccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecc-----------ccchhHHHHHHHH----HHccCceEEEE
Confidence 34478899999999999887766666666889999999887 2333344445444 44566789999
Q ss_pred eCCCcchhhh
Q psy3651 247 NKTDLLAEKL 256 (334)
Q Consensus 247 NK~Dl~~eki 256 (334)
||+|.+.-++
T Consensus 132 nkidrl~~el 141 (887)
T KOG0467|consen 132 NKIDRLITEL 141 (887)
T ss_pred ehhhhHHHHH
Confidence 9999655444
No 330
>KOG0459|consensus
Probab=89.39 E-value=1 Score=44.46 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=83.4
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCC--CccchhhcccccccHHHHHHHHHHH
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSS--EYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls--~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
|-..+|+++....|+....++.+.|..|+.++-.-.+.=-..+|..+.|+++- +|. .-+|- .-.-.|-..+-
T Consensus 139 R~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefe-tgFer--GgQTREha~La--- 212 (501)
T KOG0459|consen 139 RDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE-TGFEK--GGQTREHAMLA--- 212 (501)
T ss_pred hhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhh-ccccc--ccchhHHHHHH---
Confidence 45568999999999999999999999999998877666667778888887762 221 00111 11112222222
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
....-...|++.||+|-..-.= +.....+ -.+....|++ ++..+ ......+..+|...|.+
T Consensus 213 ---kt~gv~~lVv~vNKMddPtvnW--s~eRy~E----------~~~k~~~fLr--~~g~n--~~~d~~f~p~sg~tG~~ 273 (501)
T KOG0459|consen 213 ---KTAGVKHLIVLINKMDDPTVNW--SNERYEE----------CKEKLQPFLR--KLGFN--PKPDKHFVPVSGLTGAN 273 (501)
T ss_pred ---HhhccceEEEEEEeccCCccCc--chhhHHH----------HHHHHHHHHH--Hhccc--CCCCceeeecccccccc
Confidence 2224457899999999644211 1111111 1233344555 23333 23556778899999999
Q ss_pred HHHHH
Q psy3651 312 IKIVF 316 (334)
Q Consensus 312 I~~vf 316 (334)
+++--
T Consensus 274 ~k~~~ 278 (501)
T KOG0459|consen 274 VKDRT 278 (501)
T ss_pred hhhcc
Confidence 87643
No 331
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=89.00 E-value=0.41 Score=42.60 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=21.7
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
...+++||+++|++++++++|+...
T Consensus 175 ~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 175 EAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 3568999999999999999998764
No 332
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=88.74 E-value=1.6 Score=40.42 Aligned_cols=83 Identities=10% Similarity=0.108 Sum_probs=47.5
Q ss_pred ceeEEEEEeeCcceeeeecCCccccc--ccc--------ccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 161 GITEFTIVISNIPFLFVDVGGQRSQR--RKW--------FQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 161 Gi~~~~~~~~~~~~~i~DvgGq~~~r--~kw--------~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
.........++.++.+|||+|-.... ..+ ..|.. ..++|+||..++..... ..-...++.+
T Consensus 68 ~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~-------~~d~~llk~I 140 (249)
T cd01853 68 RVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD-------YLDLPLLRAI 140 (249)
T ss_pred EEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCC-------HHHHHHHHHH
Confidence 33444455678899999999976441 111 12333 57889999877653100 1111344444
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
.+.+..... .++++++||+|..
T Consensus 141 ~e~fG~~i~--~~~ivV~T~~d~~ 162 (249)
T cd01853 141 TDSFGPSIW--RNAIVVLTHAASS 162 (249)
T ss_pred HHHhChhhH--hCEEEEEeCCccC
Confidence 444432222 3599999999964
No 333
>KOG0465|consensus
Probab=88.52 E-value=1 Score=46.57 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=57.1
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
|.-|+-.-...+..++.++.++||.|+-.+----..-.+-.|+.|.|++... .-...+...|.+...
T Consensus 88 rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-----------GVqsQt~tV~rQ~~r-- 154 (721)
T KOG0465|consen 88 RGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-----------GVESQTETVWRQMKR-- 154 (721)
T ss_pred cCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-----------ceehhhHHHHHHHHh--
Confidence 4444444456777789999999999998653222233455677777776665 334466677777765
Q ss_pred CCCCCcEEEEEeCCCcch
Q psy3651 236 IFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~ 253 (334)
.+.|.|.|.||+|...
T Consensus 155 --y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 155 --YNVPRICFINKMDRMG 170 (721)
T ss_pred --cCCCeEEEEehhhhcC
Confidence 4789999999999654
No 334
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=88.20 E-value=6.3 Score=38.92 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=43.3
Q ss_pred cceeeeecCCcccccccccc--cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQ--CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~--~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.-+.+.|++|++..-+-.+. .=..+|..++++...+=-+ .--.|-+-+. + -...|+|++.+|+
T Consensus 201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--------~~tkEHLgi~---~----a~~lPviVvvTK~ 265 (527)
T COG5258 201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--------KMTKEHLGIA---L----AMELPVIVVVTKI 265 (527)
T ss_pred cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--------hhhhHhhhhh---h----hhcCCEEEEEEec
Confidence 45789999999975443333 2257899999998877311 1112222221 1 1467999999999
Q ss_pred Ccch
Q psy3651 250 DLLA 253 (334)
Q Consensus 250 Dl~~ 253 (334)
|+..
T Consensus 266 D~~~ 269 (527)
T COG5258 266 DMVP 269 (527)
T ss_pred ccCc
Confidence 9854
No 335
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=87.45 E-value=0.69 Score=40.26 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
|+|++|+|..+.- ..+-.+-.+.+. +. ..+.|+|+++||+|+..
T Consensus 1 DvVl~VvDar~p~--------~~~~~~i~~~~~--l~---~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPL--------GCRCPQVEEAVL--QA---GGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCC--------CCCCHHHHHHHH--hc---cCCCCEEEEEehhhcCC
Confidence 6899999987741 011111111111 11 24579999999999964
No 336
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=86.84 E-value=1.5 Score=36.47 Aligned_cols=98 Identities=16% Similarity=0.321 Sum_probs=63.4
Q ss_pred eeecCCccccccccccc----ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 176 FVDVGGQRSQRRKWFQC----FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 176 i~DvgGq~~~r~kw~~~----f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
.+|+.|---+.+.|-|- ..+++.+++|-+..+.-+. |.-. | .. ....|+|=+.+|.||
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~---------f~p~---f----~~--~~~k~vIgvVTK~DL 102 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR---------FPPG---F----LD--IGVKKVIGVVTKADL 102 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc---------CCcc---c----cc--ccccceEEEEecccc
Confidence 56999988778888553 3689999999998886221 1100 0 11 123468999999999
Q ss_pred chh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 252 LAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 252 ~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
.+. .| . .++.++++ .. .-.+|.+||.|.++|+++++.+..
T Consensus 103 aed~dI-----~----------------~~~~~L~e-------aG--a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 103 AEDADI-----S----------------LVKRWLRE-------AG--AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cchHhH-----H----------------HHHHHHHH-------cC--CcceEEEeccCcccHHHHHHHHHh
Confidence 842 22 1 12222221 11 234789999999999999987754
No 337
>KOG3905|consensus
Probab=86.27 E-value=2.2 Score=41.11 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=44.1
Q ss_pred CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318 (334)
Q Consensus 239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~ 318 (334)
++|+++|.+|+|...--. +..+.+ ++-.+||....+...- ......++||++.+.||+.+...
T Consensus 222 Gi~vlVV~TK~D~~s~le--ke~eyr-------------Dehfdfiq~~lRkFCL--r~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLE--KEHEYR-------------DEHFDFIQSHLRKFCL--RYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred CCcEEEEEeccchhhHhh--hcchhh-------------HHHHHHHHHHHHHHHH--HcCceeEEeecccccchHHHHHH
Confidence 479999999999743211 121221 1222455554433321 24456899999999999999998
Q ss_pred HHHHHH
Q psy3651 319 VKNTIL 324 (334)
Q Consensus 319 v~~~I~ 324 (334)
|...+.
T Consensus 285 ivhr~y 290 (473)
T KOG3905|consen 285 IVHRSY 290 (473)
T ss_pred HHHHhc
Confidence 887665
No 338
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=83.47 E-value=1.5 Score=40.78 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=54.6
Q ss_pred CcceeeeecC--CcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVG--GQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~Dvg--Gq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
++.+-|..|- ||... ..-+-||.+++|....-=|+. .-+..- ++. ++=|+|.||
T Consensus 121 G~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~i-------Q~~KaG------imE------iaDi~vVNK 176 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEI-------QAIKAG------IME------IADIFVVNK 176 (266)
T ss_dssp T-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCC-------CTB-TT------HHH------H-SEEEEE-
T ss_pred CCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHH-------HHHhhh------hhh------hccEEEEeC
Confidence 4667777764 55432 234567888888765543321 111111 111 123789999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC--CCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE--KKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~--~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
.|+...+- ...++.. . +.+.... ....++..|||+.+.+|.++++.|.+
T Consensus 177 aD~~gA~~--~~~~l~~---------------------~-l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 177 ADRPGADR--TVRDLRS---------------------M-LHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp -SHHHHHH--HHHHHHH---------------------H-HHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred CChHHHHH--HHHHHHH---------------------H-HhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 99655432 2222221 1 3332221 23457899999999999999998876
No 339
>KOG1424|consensus
Probab=80.98 E-value=1.6 Score=44.28 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhh
Q psy3651 186 RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEK 255 (334)
Q Consensus 186 r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ek 255 (334)
|.+|.- .+-+|.||-+||.-+. .+.-+-.+...+.+. ......+|+.||.||....
T Consensus 166 RQLWRV-lErSDivvqIVDARnP-----------llfr~~dLe~Yvke~--d~~K~~~LLvNKaDLl~~~ 221 (562)
T KOG1424|consen 166 RQLWRV-LERSDIVVQIVDARNP-----------LLFRSPDLEDYVKEV--DPSKANVLLVNKADLLPPE 221 (562)
T ss_pred HHHHHH-HhhcceEEEEeecCCc-----------cccCChhHHHHHhcc--ccccceEEEEehhhcCCHH
Confidence 566763 4778999999999884 444444444444332 3446789999999998764
No 340
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=80.89 E-value=6 Score=33.90 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=43.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+...+.++|++|.-... -...+..+|.+|.++..+.. .+.....+++.+-. .+.|+.+++||.
T Consensus 91 ~~~d~viiDtpp~~~~~--~~~~l~~aD~vliv~~~~~~-----------~~~~~~~~~~~l~~----~~~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGCP--VIASLTGADAALLVTEPTPS-----------GLHDLERAVELVRH----FGIPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcHH--HHHHHHcCCEEEEEecCCcc-----------cHHHHHHHHHHHHH----cCCCEEEEEeCC
Confidence 35678899999765432 23456889999999988863 34444444433322 245788999999
Q ss_pred Ccc
Q psy3651 250 DLL 252 (334)
Q Consensus 250 Dl~ 252 (334)
|..
T Consensus 154 ~~~ 156 (179)
T cd03110 154 DLN 156 (179)
T ss_pred CCC
Confidence 964
No 341
>KOG0460|consensus
Probab=79.46 E-value=4.6 Score=39.20 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=55.5
Q ss_pred ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
++|--|+..-...++--...+--.|..|+..+-+..+.=-...|+.|+||+.+|= ......|-+.+-+++
T Consensus 99 kaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQV-- 168 (449)
T KOG0460|consen 99 KARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQV-- 168 (449)
T ss_pred hhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHc--
Confidence 3444444433333444457788889999987766555545567999999999983 123444555555443
Q ss_pred hcCCCCCcEEEEEeCCCcc
Q psy3651 234 NVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~ 252 (334)
.=..|++|.||.|+.
T Consensus 169 ----GV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 169 ----GVKHIVVFINKVDLV 183 (449)
T ss_pred ----CCceEEEEEeccccc
Confidence 223689999999987
No 342
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=77.32 E-value=5.2 Score=38.14 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.8
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
..-+.+.|||..+++|.++++.|.+..
T Consensus 227 W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 227 WRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred CCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 445688999999999999999988743
No 343
>KOG1143|consensus
Probab=75.38 E-value=21 Score=35.17 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=67.9
Q ss_pred cceeeeecCCcccccccccccccC--CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDS--VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~--v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.-+.++|.+|++++.+-.++-..+ -+...+|++...= -.....|-+-+... -+.|++++.+|+
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--------i~~tTrEHLgl~~A-------L~iPfFvlvtK~ 313 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--------ITWTTREHLGLIAA-------LNIPFFVLVTKM 313 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--------CccccHHHHHHHHH-------hCCCeEEEEEee
Confidence 457899999999998888776654 4666666665431 11233444444332 368999999999
Q ss_pred Ccchhh-hccccchhhhhC--CCCCCCC---ccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 250 DLLAEK-LRTSKTSIAEHF--PEFEGDP---QDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 250 Dl~~ek-i~~~~~~l~~~F--p~y~g~~---~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
||-... +.+...+++... |.....| .+.++|.+--.+ + ....-++++.+|...|++.+.+
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~----~--~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQE----L--CSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHH----h--ccCCceeEEEEeecCccchhHH
Confidence 997641 100122333322 1222111 112222111111 1 1124467888999999987654
No 344
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=74.37 E-value=7.1 Score=35.97 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=41.2
Q ss_pred cceeeeec-CCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 172 IPFLFVDV-GGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 172 ~~~~i~Dv-gGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
..+-+.|| +|-+-+.|... +++|.+|.|+|.|-. ++.-|.+ ..++.+.- .=.+|.+++||.|
T Consensus 134 ~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~-----------sl~taer-i~~L~~el--g~k~i~~V~NKv~ 196 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYK-----------SLRTAER-IKELAEEL--GIKRIFVVLNKVD 196 (255)
T ss_pred CcEEEEecccchhhhccccc---cCCCEEEEEeCCcHH-----------HHHHHHH-HHHHHHHh--CCceEEEEEeecc
Confidence 45668888 78876665443 699999999998872 3332222 22222221 1258999999999
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
--
T Consensus 197 e~ 198 (255)
T COG3640 197 EE 198 (255)
T ss_pred ch
Confidence 54
No 345
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=72.21 E-value=11 Score=31.13 Aligned_cols=65 Identities=11% Similarity=0.366 Sum_probs=44.7
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.++|+++.-... ....+..+|.++++++.+. ..+......++.+.+.. ...++.+++|+.+-
T Consensus 45 yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~-----------~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEP-----------TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCCh-----------hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 567899998754332 3457889999999998876 35555555555554322 34578899999974
No 346
>KOG1707|consensus
Probab=72.18 E-value=26 Score=36.37 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=34.5
Q ss_pred cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 194 DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 194 ~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
..||.+.+++|+|++ +++.-...+++.- .....+|.++++.|.|+-+.
T Consensus 494 ~~cDv~~~~YDsS~p----------~sf~~~a~v~~~~---~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 494 AACDVACLVYDSSNP----------RSFEYLAEVYNKY---FDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred ceeeeEEEecccCCc----------hHHHHHHHHHHHh---hhccCCceEEEeeccccchh
Confidence 568999999999987 4444444443332 12367899999999998665
No 347
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=71.16 E-value=15 Score=38.92 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=51.8
Q ss_pred ecceeEEEEEeeCcceeeeecCCccccc------cccc----cccc--CCCeEEEEEeCCCccchhhcccccccH---HH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQR------RKWF----QCFD--SVTSILFLVSSSEYDQTLVEDRRTNRL---HE 223 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r------~kw~----~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl---~e 223 (334)
|+.+........+..+.++||.|-.... ..+. .++. ++++||||.+++.+ .+- ..
T Consensus 153 TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~----------~~D~eD~~ 222 (763)
T TIGR00993 153 TTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQ----------TRDSNDLP 222 (763)
T ss_pred ceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCc----------cccHHHHH
Confidence 3334344445568899999999987531 1221 2333 58999999998765 221 13
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 224 sl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+++.+..++...... .+||+++..|...
T Consensus 223 aLr~Iq~lFG~~Iwk--~tIVVFThgD~lp 250 (763)
T TIGR00993 223 LLRTITDVLGPSIWF--NAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHhCHHhHc--CEEEEEeCCccCC
Confidence 555566656543332 5788999999754
No 348
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=69.28 E-value=12 Score=37.99 Aligned_cols=70 Identities=13% Similarity=0.275 Sum_probs=43.7
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
+||+||++|.|.... ++ +..... ++-.+||....+.+.- ..+...++||++...|+..++..|
T Consensus 197 ipi~VV~tksD~~~~-Le-k~~~~~-------------~e~~DfIqq~LR~~cL--~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 197 IPIVVVCTKSDKIET-LE-KETDWK-------------EEHFDFIQQYLRTFCL--KYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred cceEEEEecccHHHH-Hh-hhcccc-------------hhhHHHHHHHHHHHHH--hcCCeEEEeeccccccHHHHHHHH
Confidence 799999999997653 21 111111 1222355544333321 245668889999999999988887
Q ss_pred HHHHHHH
Q psy3651 320 KNTILHR 326 (334)
Q Consensus 320 ~~~I~~~ 326 (334)
...+...
T Consensus 260 ~h~l~~~ 266 (472)
T PF05783_consen 260 LHRLYGF 266 (472)
T ss_pred HHHhccC
Confidence 7766543
No 349
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=68.43 E-value=4.6 Score=45.59 Aligned_cols=76 Identities=14% Similarity=0.262 Sum_probs=44.7
Q ss_pred eeeeecCCcc--------ccccccccccc---------CCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhc
Q psy3651 174 FLFVDVGGQR--------SQRRKWFQCFD---------SVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNV 235 (334)
Q Consensus 174 ~~i~DvgGq~--------~~r~kw~~~f~---------~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~ 235 (334)
--++||+|.- ..+..|..+.. ..+|||.++|+++.-..-.+. ...+...+ .-++++.. .
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~--~~~~a~~lR~rl~el~~-~ 239 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAE--RKAHARAIRQRLQELRE-Q 239 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHH--HHHHHHHHHHHHHHHHH-H
Confidence 4489999933 23456877643 589999999999762111110 01111222 22233322 2
Q ss_pred CCCCCcEEEEEeCCCcc
Q psy3651 236 IFRNVSFILFLNKTDLL 252 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~ 252 (334)
.-...|+.|+++|+|+.
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 34578999999999975
No 350
>COG1161 Predicted GTPases [General function prediction only]
Probab=67.20 E-value=14 Score=35.37 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=33.9
Q ss_pred ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 185 QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 185 ~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
..+.-......++.|+-|+|.-++... .+. .++.++ .+.|.++++||.||...
T Consensus 24 ~~~~~~~~~~~~d~vvevvDar~P~~s------~~~------~l~~~v-----~~k~~i~vlNK~DL~~~ 76 (322)
T COG1161 24 AKRQLKEVLKSVDVVVEVVDARDPLGT------RNP------ELERIV-----KEKPKLLVLNKADLAPK 76 (322)
T ss_pred HHHHHHHhcccCCEEEEEEeccccccc------cCc------cHHHHH-----ccCCcEEEEehhhcCCH
Confidence 333344556789999999999997221 111 122333 33455999999999764
No 351
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=65.77 E-value=7.3 Score=38.32 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=34.9
Q ss_pred cceeeeecCCccccccccccccc-----CCCeEEEEEeCCCccchhhcccccccHHHH-HHHHHHHHhhcCCCCCcEEEE
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFD-----SVTSILFLVSSSEYDQTLVEDRRTNRLHES-RNIFDTIINNVIFRNVSFILF 245 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~-----~v~~iIfv~dls~~d~~l~ed~~~nrl~es-l~lf~~i~~~~~~~~~piiL~ 245 (334)
-++.+||+.|-..-+-....|++ .-|.+|.+.+ .|+.+. +.+...+-. .+.|+.+|
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--------------~rf~~ndv~La~~i~~----~gK~fyfV 147 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--------------ERFTENDVQLAKEIQR----MGKKFYFV 147 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--------------SS--HHHHHHHHHHHH----TT-EEEEE
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--------------CCCchhhHHHHHHHHH----cCCcEEEE
Confidence 57999999998776666666654 4576665543 445444 345555544 56899999
Q ss_pred EeCCCc
Q psy3651 246 LNKTDL 251 (334)
Q Consensus 246 lNK~Dl 251 (334)
-+|.|.
T Consensus 148 RTKvD~ 153 (376)
T PF05049_consen 148 RTKVDS 153 (376)
T ss_dssp E--HHH
T ss_pred Eecccc
Confidence 999994
No 352
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=65.19 E-value=7.8 Score=36.14 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCCeEEEEEeCCCccchhhcccccccHHH-HHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 195 SVTSILFLVSSSEYDQTLVEDRRTNRLHE-SRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 195 ~v~~iIfv~dls~~d~~l~ed~~~nrl~e-sl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
..+|||.++|+.+.-..-.+......+.. ...-++++. ...-...|+.|++||+|+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~-~~lg~~~PVYvv~Tk~D~l 82 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQ-RTLGVRLPVYVVFTKCDLL 82 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHH-HHhCCCCCeEeeeECCCcc
Confidence 47999999999875221110000011111 122223332 2344678999999999974
No 353
>KOG2423|consensus
Probab=64.27 E-value=7.8 Score=38.38 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=38.5
Q ss_pred CCcccccccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 180 GGQRSQRRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 180 gGq~~~r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
.||. .+.|...| +.+|+||=|+|.-|.- ..|-.. ++ +.+.. .-+...+|+|+||+||.-
T Consensus 197 kGQS--kRIW~ELyKViDSSDVvvqVlDARDPm--------GTrc~~-ve---~ylkk-e~phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 197 KGQS--KRIWGELYKVIDSSDVVVQVLDARDPM--------GTRCKH-VE---EYLKK-EKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred ccch--hHHHHHHHHhhcccceeEEeeeccCCc--------ccccHH-HH---HHHhh-cCCcceeEEEeecccccc
Confidence 3564 57898877 5789999999998861 122222 22 22222 235678999999999854
No 354
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=63.29 E-value=14 Score=34.65 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=24.5
Q ss_pred ceeeeecCCcccc----ccc---ccccccCCCeEEEEEeCCCc
Q psy3651 173 PFLFVDVGGQRSQ----RRK---WFQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 173 ~~~i~DvgGq~~~----r~k---w~~~f~~v~~iIfv~dls~~ 208 (334)
.++++|++|-..- +.+ .....+.+|++++|+|..+-
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~d 105 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFED 105 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcCC
Confidence 5899999995431 122 22234679999999998643
No 355
>KOG2484|consensus
Probab=58.27 E-value=14 Score=36.48 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=31.4
Q ss_pred ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
.+.+|+||.|.|.-|...+ .-..++++ +++.+ .+...|||+||.||.-
T Consensus 144 ve~sDVVleVlDARDPlgt-----R~~~vE~~------V~~~~--gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 144 VEASDVVLEVLDARDPLGT-----RCPEVEEA------VLQAH--GNKKLILVLNKIDLVP 191 (435)
T ss_pred HhhhheEEEeeeccCCCCC-----CChhHHHH------HHhcc--CCceEEEEeehhccCC
Confidence 3568999999999987331 11233333 22222 4578999999999843
No 356
>KOG0447|consensus
Probab=57.62 E-value=63 Score=33.57 Aligned_cols=118 Identities=17% Similarity=0.332 Sum_probs=67.7
Q ss_pred ecceeEEEEEeeC---cceeeeecCCccc-------------ccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 159 TKGITEFTIVISN---IPFLFVDVGGQRS-------------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 159 T~Gi~~~~~~~~~---~~~~i~DvgGq~~-------------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
|+.-.....+++| .++.+.|.+|--+ .-++-.+|.++..|||+|+-=.+-|
T Consensus 396 TVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD------------- 462 (980)
T KOG0447|consen 396 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD------------- 462 (980)
T ss_pred ccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc-------------
Confidence 3333344455554 4667888887644 2245678999999999998543332
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchh-----hhhCC----CC----CCC---CccHHHHHHHHHH
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSI-----AEHFP----EF----EGD---PQDMQAVQTFLLN 286 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l-----~~~Fp----~y----~g~---~~~~~~~~~fi~~ 286 (334)
.-......++..-...+...|+|++|.|+.++.+ .....+ .+.|| .| +|. ..+.++..+|=.+
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknl-A~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~ 541 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNV-ASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEE 541 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhcc-CCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHH
Confidence 1112223344443345667899999999987644 112222 24566 33 232 2345566667666
Q ss_pred HHHh
Q psy3651 287 YFKA 290 (334)
Q Consensus 287 ~F~~ 290 (334)
-|..
T Consensus 542 FF~n 545 (980)
T KOG0447|consen 542 FFQN 545 (980)
T ss_pred Hhhh
Confidence 6654
No 357
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=56.71 E-value=7.5 Score=27.38 Aligned_cols=14 Identities=50% Similarity=0.892 Sum_probs=11.6
Q ss_pred CCCCCCCCeeeeee
Q psy3651 2 YSNSKDGNCVETRA 15 (334)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (334)
||+...|||||+..
T Consensus 9 ~S~~~~~~CVEva~ 22 (56)
T PF04149_consen 9 YSGGGGGNCVEVAR 22 (56)
T ss_pred CCCCCCCCcEEEEe
Confidence 67778999999973
No 358
>PTZ00258 GTP-binding protein; Provisional
Probab=54.88 E-value=22 Score=35.13 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=25.6
Q ss_pred cceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~ 208 (334)
..+.++||+|-..-.. +.....++++++|+|+|..+-
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d 128 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFED 128 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 4589999999553211 223345789999999998644
No 359
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=51.80 E-value=17 Score=30.81 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 195 SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 195 ~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
.++++++++|.+.+.+.+.. + -.+.+++... . +|++||+|+
T Consensus 118 ~~d~vv~vvDa~~~~~~~~~------~---~~~~~Qi~~a------d-~ivlnk~dl 158 (158)
T cd03112 118 LLDGVITLVDAKHANQHLDQ------Q---TEAQSQIAFA------D-RILLNKTDL 158 (158)
T ss_pred eeccEEEEEEhhHhHHHhhc------c---HHHHHHHHHC------C-EEEEecccC
Confidence 57899999999887543321 1 1122333322 2 568999996
No 360
>KOG1954|consensus
Probab=51.39 E-value=19 Score=35.48 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=42.9
Q ss_pred ceeeeecCCccccccccc----------ccc-cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 173 PFLFVDVGGQRSQRRKWF----------QCF-DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~----------~~f-~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
.+.|+|+.|--+-++... ..| +.||.||.++|....| --.|-.....++-. ..-.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD----------IsdEf~~vi~aLkG----~Edk 213 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD----------ISDEFKRVIDALKG----HEDK 213 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc----------ccHHHHHHHHHhhC----Ccce
Confidence 578999999776655422 122 5689999999987762 22333333333333 3346
Q ss_pred EEEEEeCCCcch
Q psy3651 242 FILFLNKTDLLA 253 (334)
Q Consensus 242 iiL~lNK~Dl~~ 253 (334)
+-+|+||.|..+
T Consensus 214 iRVVLNKADqVd 225 (532)
T KOG1954|consen 214 IRVVLNKADQVD 225 (532)
T ss_pred eEEEeccccccC
Confidence 788999999644
No 361
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=47.85 E-value=39 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=24.8
Q ss_pred ceeeeecCCcccc----cc---cccccccCCCeEEEEEeCCC
Q psy3651 173 PFLFVDVGGQRSQ----RR---KWFQCFDSVTSILFLVSSSE 207 (334)
Q Consensus 173 ~~~i~DvgGq~~~----r~---kw~~~f~~v~~iIfv~dls~ 207 (334)
.+.+.|++|-... +. +.....+.++++|+|+|.++
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 5899999995431 11 22333578999999999974
No 362
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=47.77 E-value=38 Score=29.92 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=39.2
Q ss_pred CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH----hhcCCCCCcEEEEEeC
Q psy3651 197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII----NNVIFRNVSFILFLNK 248 (334)
Q Consensus 197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~----~~~~~~~~piiL~lNK 248 (334)
-++++++|.|++ .+.+|-..+|+.-++.....++ +.....+..++.+.+|
T Consensus 4 ea~vi~lD~S~s--M~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~ 57 (187)
T cd01452 4 EATMICIDNSEY--MRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGN 57 (187)
T ss_pred eEEEEEEECCHH--HHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCC
Confidence 478999999997 6778888899999998888765 4334456788888883
No 363
>KOG0466|consensus
Probab=47.02 E-value=23 Score=34.01 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=67.8
Q ss_pred ceeeeecCCcccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.|..|+.-. ....+.++ |+++++++-.+.. .. ....|.+...+ ++ .=..++++-||.
T Consensus 126 HVSfVDCPGHDiL---MaTMLnGaAvmDaalLlIA~NEsC---PQ----PQTsEHLaave-iM-----~LkhiiilQNKi 189 (466)
T KOG0466|consen 126 HVSFVDCPGHDIL---MATMLNGAAVMDAALLLIAGNESC---PQ----PQTSEHLAAVE-IM-----KLKHIIILQNKI 189 (466)
T ss_pred EEEeccCCchHHH---HHHHhcchHHhhhhhhhhhcCCCC---CC----CchhhHHHHHH-Hh-----hhceEEEEechh
Confidence 4668899998743 33445553 7777777766541 11 22233332222 22 224789999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
||..+.- .+++ +++..+||+.. .....+...+||--+.||..+.+.+.+.|
T Consensus 190 Dli~e~~-----A~eq-----------~e~I~kFi~~t-------~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 190 DLIKESQ-----ALEQ-----------HEQIQKFIQGT-------VAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhHHH-----HHHH-----------HHHHHHHHhcc-------ccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 9977632 1222 24444555543 11345678899999999999998887755
No 364
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=44.59 E-value=63 Score=25.27 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=39.0
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
.+-++|+++.-... -...+..++.+|.+++.+.. .+.....+.+.+..........+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~-----------s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLP-----------SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChH-----------HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 67899999866432 23457889999999987774 44444444443333221114567788885
No 365
>PHA02518 ParA-like protein; Provisional
Probab=44.50 E-value=1.3e+02 Score=25.92 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=40.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc-EEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS-FILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p-iiL~lNK~ 249 (334)
...+.|+|++|..+ .........+|.||.++..+..+- ..+.+.+.+++.+.. .....+ +.++.|+.
T Consensus 76 ~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 76 GYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDI--------WAAPDLVELIKARQE--VTDGLPKFAFIISRA 143 (211)
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhH--------HHHHHHHHHHHHHHh--hCCCCceEEEEEecc
Confidence 35678999998743 345566788999999998887421 223333344444322 122344 45667776
Q ss_pred C
Q psy3651 250 D 250 (334)
Q Consensus 250 D 250 (334)
+
T Consensus 144 ~ 144 (211)
T PHA02518 144 I 144 (211)
T ss_pred C
Confidence 5
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=44.48 E-value=48 Score=28.07 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=36.8
Q ss_pred CcceeeeecCCcccccccccc----cc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQ----CF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL 244 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~----~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL 244 (334)
+..+-+.|++|......-+.. +. ...+.+++|++.... . ++++......+. .. ..-+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~----------~---~~~~~~~~~~~~--~~--~~~v 144 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG----------Q---DAVNQAKAFNEA--LG--ITGV 144 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC----------h---HHHHHHHHHHhh--CC--CCEE
Confidence 455678999997543222221 11 248999999997542 1 222333333221 11 2567
Q ss_pred EEeCCCcch
Q psy3651 245 FLNKTDLLA 253 (334)
Q Consensus 245 ~lNK~Dl~~ 253 (334)
++||.|...
T Consensus 145 iltk~D~~~ 153 (173)
T cd03115 145 ILTKLDGDA 153 (173)
T ss_pred EEECCcCCC
Confidence 789999644
No 367
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=43.80 E-value=70 Score=26.78 Aligned_cols=64 Identities=6% Similarity=0.133 Sum_probs=40.7
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
.+-++|++|..... -...+..++.+|.+++.+.. .+.....+.+.+-. . ....+.+++|+.+-.
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-----------s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-----------SLRDADRVKGLLEA-L--GIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-----------hHHHHHHHHHHHHH-c--CCceEEEEEeCCccc
Confidence 67899998865432 23446789999999987763 44444444433322 1 223567899999854
No 368
>KOG0448|consensus
Probab=41.54 E-value=90 Score=33.18 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=43.5
Q ss_pred ceeeeecCCcc--cccccccc-cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 173 PFLFVDVGGQR--SQRRKWFQ-CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 173 ~~~i~DvgGq~--~~r~kw~~-~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.|-.|-. ++..-|+. +..++|.+|||+-.-+ .-+....+.|..+... +.-|+++-||.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn-----------tlt~sek~Ff~~vs~~----KpniFIlnnkw 271 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN-----------TLTLSEKQFFHKVSEE----KPNIFILNNKW 271 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc-----------HhHHHHHHHHHHhhcc----CCcEEEEechh
Confidence 45677777765 35566765 4579999999986554 3345556666665442 44567777888
Q ss_pred Ccchh
Q psy3651 250 DLLAE 254 (334)
Q Consensus 250 Dl~~e 254 (334)
|.-..
T Consensus 272 Dasas 276 (749)
T KOG0448|consen 272 DASAS 276 (749)
T ss_pred hhhcc
Confidence 97554
No 369
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=41.12 E-value=93 Score=31.46 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=12.1
Q ss_pred CCCcEEEEEeCCC
Q psy3651 238 RNVSFILFLNKTD 250 (334)
Q Consensus 238 ~~~piiL~lNK~D 250 (334)
.+.|+++++||+|
T Consensus 179 ~~kPfiivlN~~d 191 (492)
T TIGR02836 179 LNKPFIILLNSTH 191 (492)
T ss_pred cCCCEEEEEECcC
Confidence 5789999999999
No 370
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=40.77 E-value=58 Score=31.94 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=50.3
Q ss_pred cceeeeecCCcccccccc-cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQRSQRRKW-FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw-~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
..+.++|.+ .-..-| ..+..+++.|+.|++.|= -.+..++++++.+-..+ ....+..+++||.+
T Consensus 218 ~~~vV~Dlp---~~~~~~t~~vL~~Sd~iviv~e~sl-----------~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~ 282 (366)
T COG4963 218 FDFVVVDLP---NIWTDWTRQVLSGSDEIVIVAEPSL-----------ASLRNAKELLDELKRLR-PNDPKPILVLNRVG 282 (366)
T ss_pred CCeEEEcCC---CccchHHHHHHhcCCeEEEEecccH-----------HHHHHHHHHHHHHHHhC-CCCCCceEEeeecC
Confidence 567899999 222334 456789999999998877 58899999998887654 35568889999998
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
..
T Consensus 283 ~~ 284 (366)
T COG4963 283 VP 284 (366)
T ss_pred CC
Confidence 53
No 371
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.23 E-value=41 Score=33.75 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=39.8
Q ss_pred CcceeeeecCCccccccccccc------ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQC------FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL 244 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~------f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL 244 (334)
+..+-|+||+|.......+..- ..+.+.++||+|.+-- ..-.+..+.|.+.+ .+--+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G----------q~a~~~a~~F~~~~-------~~~g~ 244 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG----------QAAEAQAKAFKDSV-------DVGSV 244 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC----------hhHHHHHHHHHhcc-------CCcEE
Confidence 5788999999976543333221 1246789999997643 22233345554322 24567
Q ss_pred EEeCCCcc
Q psy3651 245 FLNKTDLL 252 (334)
Q Consensus 245 ~lNK~Dl~ 252 (334)
++||.|--
T Consensus 245 IlTKlD~~ 252 (429)
T TIGR01425 245 IITKLDGH 252 (429)
T ss_pred EEECccCC
Confidence 89999963
No 372
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=37.39 E-value=66 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=36.9
Q ss_pred CeEEEEEeCCCccchhhcc--cccccHHHHHHHHHHHHhh----cCCCCCcEEEEEeCC
Q psy3651 197 TSILFLVSSSEYDQTLVED--RRTNRLHESRNIFDTIINN----VIFRNVSFILFLNKT 249 (334)
Q Consensus 197 ~~iIfv~dls~~d~~l~ed--~~~nrl~esl~lf~~i~~~----~~~~~~piiL~lNK~ 249 (334)
.+++|++|+|.. ..... ....+++.++.....+++. .....+.+++++++.
T Consensus 2 e~ivf~iDvS~S--M~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~ 58 (218)
T cd01458 2 ESVVFLVDVSPS--MFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEE 58 (218)
T ss_pred cEEEEEEeCCHH--HcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccC
Confidence 579999999975 22121 1258999999999999985 333456888888873
No 373
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.65 E-value=1.6e+02 Score=26.18 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=40.1
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
.+-++|+++.-. ..-......+|.+|.++..+.. .+......+.+++.. .....++-+++|+.|--
T Consensus 116 D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~-----------s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGPS--PITRQALAAADLVLVVVNADAA-----------CYATLHQQALALFAG-SGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHH-----------HHHHHHHHHHHHhhc-ccccccceEEeeccCcc
Confidence 577999998533 2334556789999999987653 233322233334331 11234577899999853
No 374
>KOG1534|consensus
Probab=34.23 E-value=1.3e+02 Score=27.56 Aligned_cols=182 Identities=19% Similarity=0.285 Sum_probs=97.4
Q ss_pred HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651 93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI 172 (334)
Q Consensus 93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~ 172 (334)
++.-.|+.|-.-..|.+-+.-..+=.|.-+..|+++|++-+-.. .++. .-
T Consensus 49 ~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~NldwL~~~------~Gd~------------------------ed 98 (273)
T KOG1534|consen 49 PVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENLDWLEEE------IGDV------------------------ED 98 (273)
T ss_pred cccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHHHHHHhh------ccCc------------------------cC
Confidence 34445777777667777666555556777889999999987661 1111 12
Q ss_pred ceeeeecCCcccccc-------cccc----cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 173 PFLFVDVGGQRSQRR-------KWFQ----CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~-------kw~~----~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
.+-++|..||-.--. .-.| .|+ -+++|+.|.- | +.+- +.-+.-++..+...+. -.+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~--~c~Vylldsq-f---~vD~--~KfiSG~lsAlsAMi~----lE~P 166 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFN--VCVVYLLDSQ-F---LVDS--TKFISGCLSALSAMIS----LEVP 166 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCc--eeEEEEeccc-h---hhhH--HHHHHHHHHHHHHHHH----hcCc
Confidence 355788888865211 0011 121 2456665521 1 1100 0112333333334333 3578
Q ss_pred EEEEEeCCCcchhhhccccchhhhhC-CCCC---CCCccHHHHHHHHHHHHHhhccC-----CC-CCeEEEEEeeecCch
Q psy3651 242 FILFLNKTDLLAEKLRTSKTSIAEHF-PEFE---GDPQDMQAVQTFLLNYFKAVKRD-----EK-KPLFHHFTTAVDTEN 311 (334)
Q Consensus 242 iiL~lNK~Dl~~eki~~~~~~l~~~F-p~y~---g~~~~~~~~~~fi~~~F~~l~~~-----~~-~~i~~~~tsA~d~~n 311 (334)
-|=++.|+||...| ....+..++ |+=. +........ .||..+.+. .. .-+.++.....+.+.
T Consensus 167 ~INvlsKMDLlk~~---~k~~l~~Fl~~d~~~l~~~~~~~~~s-----~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 167 HINVLSKMDLLKDK---NKKELERFLNPDEYLLLEDSEINLRS-----PKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred chhhhhHHHHhhhh---hHHHHHHhcCCchhhhhccccccccc-----HHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 88899999999874 344555542 1100 000000000 133333221 12 346788888888899
Q ss_pred HHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTIL 324 (334)
Q Consensus 312 I~~vf~~v~~~I~ 324 (334)
|+.++..|-+.|.
T Consensus 239 i~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 239 INIILSYIDDAIQ 251 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877664
No 375
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.39 E-value=42 Score=37.95 Aligned_cols=75 Identities=19% Similarity=0.383 Sum_probs=43.3
Q ss_pred eeeeecCCccc--------cccccccc------c---cCCCeEEEEEeCCCccchhhcccccccHHHH--HHH-HHHHHh
Q psy3651 174 FLFVDVGGQRS--------QRRKWFQC------F---DSVTSILFLVSSSEYDQTLVEDRRTNRLHES--RNI-FDTIIN 233 (334)
Q Consensus 174 ~~i~DvgGq~~--------~r~kw~~~------f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~es--l~l-f~~i~~ 233 (334)
--++||+|... .++-|.++ + +..+|||..+|+++.-.. ....+..++ +.. ++++-.
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~----~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTA----DPAEREALARTLRARLQELRE 251 (1188)
T ss_pred eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCC----CHHHHHHHHHHHHHHHHHHHH
Confidence 34678887543 34568755 2 368999999999986211 111121222 111 233322
Q ss_pred hcCCCCCcEEEEEeCCCcch
Q psy3651 234 NVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~ 253 (334)
. .-...|+.|++||.|+..
T Consensus 252 t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 252 T-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred h-hccCCceEEEEecccccc
Confidence 1 224679999999999743
No 376
>KOG0469|consensus
Probab=33.15 E-value=48 Score=34.03 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=44.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+.-+.++|..|+-.+.+--..-++=.|+.+.|+|.-+= ---..-..+.+.++. .+.-+|+.||.|
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G-----------vCVQTETVLrQA~~E----RIkPvlv~NK~D 161 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-----------VCVQTETVLRQAIAE----RIKPVLVMNKMD 161 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc-----------eEechHHHHHHHHHh----hccceEEeehhh
Confidence 46688999999988776666667778889999998763 111222344444443 344478899999
Q ss_pred c
Q psy3651 251 L 251 (334)
Q Consensus 251 l 251 (334)
.
T Consensus 162 R 162 (842)
T KOG0469|consen 162 R 162 (842)
T ss_pred H
Confidence 4
No 377
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=31.65 E-value=43 Score=28.80 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=26.2
Q ss_pred CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 195 SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 195 ~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
..+.+|.|+|...+ ........++..-+.. . =+|++||.|+..+
T Consensus 113 ~~~~iI~vVDa~~~----------~~~~~~~~~~~~Qi~~---A---DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 113 RLDSIITVVDATNF----------DELENIPELLREQIAF---A---DVIVLNKIDLVSD 156 (178)
T ss_dssp SESEEEEEEEGTTH----------GGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred cccceeEEeccccc----------cccccchhhhhhcchh---c---CEEEEeccccCCh
Confidence 46899999999887 2222223333333322 2 2778999998665
No 378
>KOG2485|consensus
Probab=29.75 E-value=93 Score=29.98 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=13.6
Q ss_pred CCcEEEEEeCCCcchh
Q psy3651 239 NVSFILFLNKTDLLAE 254 (334)
Q Consensus 239 ~~piiL~lNK~Dl~~e 254 (334)
..|=|||+||+||..-
T Consensus 73 ~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 73 PKPRIIVLNKMDLADP 88 (335)
T ss_pred CCceEEEEecccccCc
Confidence 5688999999999774
No 379
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=28.61 E-value=79 Score=30.46 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=27.9
Q ss_pred CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 195 SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 195 ~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
..+++|-|+|.+.+-+ .+....+++..-+. +.+ +|++||.|+..
T Consensus 116 ~ld~vvtvVDa~~~~~---------~~~~~~~~~~~Qia---~AD---~ivlNK~Dlv~ 159 (323)
T COG0523 116 RLDGVVTVVDAAHFLE---------GLDAIAELAEDQLA---FAD---VIVLNKTDLVD 159 (323)
T ss_pred eeceEEEEEeHHHhhh---------hHHHHHHHHHHHHH---hCc---EEEEecccCCC
Confidence 4689999999999832 22222334433332 222 78999999976
No 380
>KOG0463|consensus
Probab=27.57 E-value=2.9e+02 Score=27.61 Aligned_cols=16 Identities=13% Similarity=-0.072 Sum_probs=12.7
Q ss_pred eeeeeeeeeccCCCcc
Q psy3651 11 VETRACVFHVRLYFSV 26 (334)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (334)
-.+|.|+++.+|.+.+
T Consensus 10 ka~~~~~~~~dg~~~~ 25 (641)
T KOG0463|consen 10 KATNLCELYADGNDDD 25 (641)
T ss_pred hcccceEEecCCCchH
Confidence 3578999999998754
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.45 E-value=95 Score=28.98 Aligned_cols=66 Identities=18% Similarity=0.376 Sum_probs=39.1
Q ss_pred eCcceeeeecCCccccccccc-------ccc-----cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWF-------QCF-----DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~-------~~f-----~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
++..+-++||+|.-.....+. ... ...+.+++|+|.+.-. +.+..+ ..|.+.++
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~-~~f~~~~~---- 218 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQA-KVFNEAVG---- 218 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHH-HHHHhhCC----
Confidence 457888999999865322221 111 2378999999997531 233333 33322221
Q ss_pred CCCcEEEEEeCCCcc
Q psy3651 238 RNVSFILFLNKTDLL 252 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~ 252 (334)
+--+++||.|--
T Consensus 219 ---~~g~IlTKlDe~ 230 (272)
T TIGR00064 219 ---LTGIILTKLDGT 230 (272)
T ss_pred ---CCEEEEEccCCC
Confidence 356889999963
No 382
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=27.24 E-value=2.6e+02 Score=24.51 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=39.4
Q ss_pred eCcceeeeecCCccccccccccc-ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc-EEEEEe
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQC-FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS-FILFLN 247 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~-f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p-iiL~lN 247 (334)
..+.+-++|+.|.-.....-.+. .+-++.+|.++..+.+ .+..+..+.+.+-.-....+.+ ..++.|
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~-----------sl~~~~~l~~~i~~~~~~~~~~~~gvv~N 183 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFM-----------ALYAANNICKGIRKYAKSGGVRLGGLICN 183 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccHH-----------HHHHHHHHHHHHHHhCcccCCcEEEEEEe
Confidence 35778899997655322221111 1368899999877664 4434333333332221112333 458999
Q ss_pred CCCc
Q psy3651 248 KTDL 251 (334)
Q Consensus 248 K~Dl 251 (334)
|.+.
T Consensus 184 ~~~~ 187 (212)
T cd02117 184 SRNT 187 (212)
T ss_pred CCCC
Confidence 9985
No 383
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=26.49 E-value=86 Score=27.80 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=28.8
Q ss_pred eEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC----CCCcEEEEEeCC
Q psy3651 198 SILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF----RNVSFILFLNKT 249 (334)
Q Consensus 198 ~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~----~~~piiL~lNK~ 249 (334)
++||++|++..=-....... ..|.++++....++....+ ..+.+++++++.
T Consensus 1 ~~vflID~s~sM~~~~~~~~-~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~ 55 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESE-SPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDE 55 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS--HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS
T ss_pred CEEEEEECCHHHCCCCCCcc-hhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCC
Confidence 68999999985111111111 2688888888777765432 335667776544
No 384
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=25.92 E-value=1.2e+02 Score=25.44 Aligned_cols=34 Identities=6% Similarity=0.137 Sum_probs=25.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSE 207 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~ 207 (334)
+..+-++|++|-. .-+...+..++-+|.|...+-
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~ 124 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGA 124 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCc
Confidence 5678899999854 234557889998888887663
No 385
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.46 E-value=1.6e+02 Score=26.67 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=44.4
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh--cCCCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN--VIFRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~--~~~~~~piiL~lNK 248 (334)
++.+.|+|++|..+. .....+..+|.||..+..+.+ .+..+...+..+... ..-.+.+..+++|.
T Consensus 83 ~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~-----------d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~ 149 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPL-----------DIDEALSTYRYVIELLLSENLAIPTAILRQR 149 (231)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHH-----------HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 466789999997753 344556788999988887775 344455554444321 12245678899998
Q ss_pred CC
Q psy3651 249 TD 250 (334)
Q Consensus 249 ~D 250 (334)
.+
T Consensus 150 ~~ 151 (231)
T PRK13849 150 VP 151 (231)
T ss_pred cc
Confidence 86
No 386
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=23.85 E-value=3.2e+02 Score=23.57 Aligned_cols=68 Identities=9% Similarity=0.162 Sum_probs=38.4
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+-|+|++.-... .--......+|.+|+|++..... .+.+..+++.++.. .-..+-+|+||.|
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~--------~~~~~~~~~~l~~~------~~~~~gvVlN~~~ 191 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIK--------KRDVQKAKEQLEQT------GSNFLGVVLNKVD 191 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCC--------HHHHHHHHHHHHhC------CCCEEEEEEeCcc
Confidence 356778898852110 00112345689999999887631 13444444444332 1124668999999
Q ss_pred cch
Q psy3651 251 LLA 253 (334)
Q Consensus 251 l~~ 253 (334)
...
T Consensus 192 ~~~ 194 (204)
T TIGR01007 192 ISV 194 (204)
T ss_pred ccc
Confidence 643
No 387
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=23.54 E-value=2.3e+02 Score=25.11 Aligned_cols=65 Identities=11% Similarity=0.200 Sum_probs=40.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc-EEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS-FILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p-iiL~lNK~ 249 (334)
+..+-|+|+++.-.. .-...+..+|.||.+++.+-. .+.+++...+ ..... +.+ +.+++|+.
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~-----------s~~~~~~~~~-~~~~~---~~~~~~vv~N~~ 170 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEIS-----------SITDALKTKI-VAEKL---GTAILGVVLNRV 170 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCc-----------hHHHHHHHHH-HHHhc---CCceEEEEEECC
Confidence 467889999986643 223345678999999987753 4455544432 22322 233 56899999
Q ss_pred Ccc
Q psy3651 250 DLL 252 (334)
Q Consensus 250 Dl~ 252 (334)
+-.
T Consensus 171 ~~~ 173 (251)
T TIGR01969 171 TRD 173 (251)
T ss_pred Cch
Confidence 853
No 388
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.07 E-value=1.2e+02 Score=25.58 Aligned_cols=67 Identities=6% Similarity=0.085 Sum_probs=43.5
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+-|+|+++.-... +...+..++.+|.+++.+.. .+.....+.+.+-.... .-..+.+++||.+.
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~-----------~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPS-----------SIEGAERLIELLKRLGK-KLKIIGVVINRVDP 160 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHH-----------HHHHHHHHHHHHHHHTH-TEEEEEEEEEEETS
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHH-----------HHHHHHHHHHHHHHhcc-ccceEEEEEeeeCC
Confidence 446789998866543 55667899999999998874 34454444444332211 11256789999986
Q ss_pred c
Q psy3651 252 L 252 (334)
Q Consensus 252 ~ 252 (334)
-
T Consensus 161 ~ 161 (195)
T PF01656_consen 161 G 161 (195)
T ss_dssp C
T ss_pred C
Confidence 4
No 389
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=22.31 E-value=2e+02 Score=21.76 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=25.4
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSE 207 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~ 207 (334)
..+-++|++|...... ...+..+|.+|.+++.+.
T Consensus 40 ~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 YDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPSP 73 (104)
T ss_pred CCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCCH
Confidence 5678999998764332 256778999999998766
No 390
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=21.62 E-value=3.6e+02 Score=24.47 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=38.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc-EEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS-FILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p-iiL~lNK~ 249 (334)
.+.+-|+|++|...... -...+..+|.+|.++..+-.+- ..+...++.++....+ .+.+ ..+|+|+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l--------~~~~~~~~~i~~~~~~---~~l~~~giV~Nr~ 182 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSI--------FAANRIAAAVREKAKT---YKVRLAGLIANRT 182 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccH--------HHHHHHHHHHHHHhhc---cCCceEEEEEeCC
Confidence 46788999977643211 1122668999999887765311 2233333334333221 3444 34789999
Q ss_pred Cc
Q psy3651 250 DL 251 (334)
Q Consensus 250 Dl 251 (334)
+.
T Consensus 183 ~~ 184 (267)
T cd02032 183 DK 184 (267)
T ss_pred CH
Confidence 84
No 391
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=20.57 E-value=1.8e+02 Score=30.34 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=38.9
Q ss_pred ccCCCeEEEEEeCCCccchhh---cccccccHHHHHHHHHHHHhhcCCC----CCcEEEEEeCC
Q psy3651 193 FDSVTSILFLVSSSEYDQTLV---EDRRTNRLHESRNIFDTIINNVIFR----NVSFILFLNKT 249 (334)
Q Consensus 193 f~~v~~iIfv~dls~~d~~l~---ed~~~nrl~esl~lf~~i~~~~~~~----~~piiL~lNK~ 249 (334)
|.+-+||||++|+|.. ... +.+....+.++++...++++...+. .+.+++++++.
T Consensus 7 ~~~keailflIDvs~s--M~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~ 68 (584)
T TIGR00578 7 YSGRDSLIFLVDASKA--MFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEK 68 (584)
T ss_pred ccceeEEEEEEECCHH--HcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccC
Confidence 3567999999999974 111 1223468999999999988876553 35788888753
No 392
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=20.42 E-value=1.1e+02 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=32.5
Q ss_pred cCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHh
Q psy3651 89 RLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 135 (334)
Q Consensus 89 ~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~ 135 (334)
..+|+.+..|+-||.|+.++.+|- |+...-++-++|+.+
T Consensus 255 n~dP~tL~ei~~lw~d~~vadLf~--------Dgm~~gvd~~kr~k~ 293 (339)
T PHA03260 255 NAEPPSLDEMKGLIADAKLKMLMC--------DGMAAMVDYYKLIKQ 293 (339)
T ss_pred CCCchHHHHHHHHhcCHHHHHHHH--------HHHHHHHHHHHHHhc
Confidence 568889999999999999999885 556666777888877
No 393
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=20.31 E-value=2.3e+02 Score=25.31 Aligned_cols=65 Identities=5% Similarity=0.147 Sum_probs=40.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+-|+|++|.-.. .+......+|.+|.++..+- ..+..+..+.+.+-+.. ..++.+++|+.+
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~-----------~s~~~~~~~~~~l~~~~---~~~~~iviN~~~ 174 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEV-----------SAVRDADRVIGLLEAKG---IEKIHLIVNRLR 174 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCc-----------HHHHHHHHHHHHHHHcC---CCceEEEEeCcC
Confidence 356789999876542 23344567899999887765 34444444444433221 236778999987
Q ss_pred c
Q psy3651 251 L 251 (334)
Q Consensus 251 l 251 (334)
-
T Consensus 175 ~ 175 (261)
T TIGR01968 175 P 175 (261)
T ss_pred c
Confidence 4
No 394
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=20.01 E-value=3.7e+02 Score=22.44 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=41.2
Q ss_pred CcceeeeecCCcccccccccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
+..+-|+|+++.-..-. .... ..++.+|+|+..+. ..+.++....+.+-+. .-..+-+++|+
T Consensus 67 ~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~~-----------~s~~~~~~~~~~l~~~---~~~~~gvv~N~ 130 (169)
T cd02037 67 ELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQE-----------VALDDVRKAIDMFKKV---NIPILGVVENM 130 (169)
T ss_pred CCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCch-----------hhHHHHHHHHHHHHhc---CCCeEEEEEcC
Confidence 45567899987643211 1233 46899999987776 4566666666665542 11244688999
Q ss_pred CCcc
Q psy3651 249 TDLL 252 (334)
Q Consensus 249 ~Dl~ 252 (334)
.+..
T Consensus 131 ~~~~ 134 (169)
T cd02037 131 SYFV 134 (169)
T ss_pred Cccc
Confidence 9853
Done!