Query psy3651
Match_columns 334
No_of_seqs 339 out of 2205
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:10:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 100.0 1.4E-75 4.6E-80 557.7 19.7 303 13-334 25-327 (327)
2 4fid_A G protein alpha subunit 100.0 5.6E-72 1.9E-76 534.8 15.8 296 14-334 24-336 (340)
3 1cip_A Protein (guanine nucleo 100.0 1.2E-68 4E-73 515.8 19.3 302 14-334 51-353 (353)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 8.4E-68 2.9E-72 511.4 18.8 302 14-334 52-361 (362)
5 1azs_C GS-alpha; complex (lyas 100.0 3.6E-67 1.2E-71 511.7 20.9 305 14-333 59-393 (402)
6 2xtz_A Guanine nucleotide-bind 100.0 3E-64 1E-68 485.1 15.3 303 14-334 28-354 (354)
7 4dkx_A RAS-related protein RAB 99.8 2E-19 6.8E-24 161.4 13.7 143 130-325 30-176 (216)
8 1r8s_A ADP-ribosylation factor 99.8 2.3E-18 7.8E-23 144.7 12.9 134 157-325 29-162 (164)
9 1upt_A ARL1, ADP-ribosylation 99.8 6.4E-18 2.2E-22 142.7 15.6 134 157-325 36-169 (171)
10 1fzq_A ADP-ribosylation factor 99.8 1.9E-18 6.5E-23 149.2 11.3 135 156-325 44-178 (181)
11 2x77_A ADP-ribosylation factor 99.8 8.2E-18 2.8E-22 145.3 14.1 137 157-328 51-187 (189)
12 2h17_A ADP-ribosylation factor 99.7 1.5E-17 5E-22 143.1 13.9 132 156-322 49-180 (181)
13 4bas_A ADP-ribosylation factor 99.7 1E-17 3.5E-22 145.3 13.0 136 158-328 49-192 (199)
14 1moz_A ARL1, ADP-ribosylation 99.7 1.5E-17 5.2E-22 142.4 13.8 137 156-327 46-182 (183)
15 1ksh_A ARF-like protein 2; sma 99.7 1.1E-17 3.7E-22 144.0 12.4 135 157-326 47-181 (186)
16 1zj6_A ADP-ribosylation factor 99.7 2.1E-17 7.2E-22 142.7 13.4 133 157-324 45-177 (187)
17 2b6h_A ADP-ribosylation factor 99.7 1.3E-17 4.5E-22 145.4 11.7 133 157-324 58-190 (192)
18 1f6b_A SAR1; gtpases, N-termin 99.7 1.2E-17 4.2E-22 146.4 11.4 142 158-322 55-196 (198)
19 1m2o_B GTP-binding protein SAR 99.7 3.2E-17 1.1E-21 142.7 13.6 138 157-322 52-189 (190)
20 1zd9_A ADP-ribosylation factor 99.7 2.6E-17 8.8E-22 142.6 11.9 133 158-325 53-185 (188)
21 3t1o_A Gliding protein MGLA; G 99.7 6.4E-18 2.2E-22 145.9 7.9 153 140-328 37-195 (198)
22 2h57_A ADP-ribosylation factor 99.7 4.7E-17 1.6E-21 140.8 13.4 133 157-324 52-186 (190)
23 3t5g_A GTP-binding protein RHE 99.7 5.1E-16 1.7E-20 132.7 14.3 141 139-327 29-171 (181)
24 1c1y_A RAS-related protein RAP 99.7 4.4E-16 1.5E-20 130.7 13.4 139 139-324 26-166 (167)
25 3oes_A GTPase rhebl1; small GT 99.7 7.2E-16 2.5E-20 134.8 15.0 120 170-327 70-189 (201)
26 2hup_A RAS-related protein RAB 99.7 5.9E-16 2E-20 135.8 14.3 131 158-327 60-195 (201)
27 3tw8_B RAS-related protein RAB 99.7 1.6E-15 5.4E-20 128.9 16.5 127 164-330 48-176 (181)
28 3kkq_A RAS-related protein M-R 99.7 8.4E-16 2.9E-20 131.6 14.4 117 171-325 65-182 (183)
29 3lvq_E ARF-GAP with SH3 domain 99.7 4.8E-16 1.7E-20 155.0 14.9 135 157-326 351-485 (497)
30 2fu5_C RAS-related protein RAB 99.7 7.1E-16 2.4E-20 132.1 13.7 134 157-329 38-175 (183)
31 1u8z_A RAS-related protein RAL 99.7 5.4E-16 1.8E-20 129.8 12.6 117 171-325 51-167 (168)
32 2a9k_A RAS-related protein RAL 99.7 6.7E-16 2.3E-20 131.9 13.3 120 171-328 65-184 (187)
33 3q3j_B RHO-related GTP-binding 99.7 1E-15 3.5E-20 135.8 14.8 152 139-326 50-204 (214)
34 2bov_A RAla, RAS-related prote 99.7 1.4E-15 4.7E-20 132.5 15.3 118 172-327 62-179 (206)
35 3bc1_A RAS-related protein RAB 99.7 1.3E-15 4.3E-20 130.8 14.8 120 171-328 69-188 (195)
36 2a5j_A RAS-related protein RAB 99.7 2.2E-15 7.4E-20 130.6 16.4 124 166-328 62-187 (191)
37 2fn4_A P23, RAS-related protei 99.7 1.1E-15 3.6E-20 130.0 13.9 118 172-327 57-174 (181)
38 2g6b_A RAS-related protein RAB 99.7 1E-15 3.6E-20 130.3 13.8 132 158-328 42-177 (180)
39 3r7w_B Gtpase2, GTP-binding pr 99.7 6.7E-17 2.3E-21 153.2 6.9 137 156-325 31-174 (331)
40 2gf9_A RAS-related protein RAB 99.7 3.3E-15 1.1E-19 129.1 16.8 118 170-326 69-186 (189)
41 2atx_A Small GTP binding prote 99.7 2.6E-15 9.1E-20 130.0 15.9 148 140-324 42-192 (194)
42 3o47_A ADP-ribosylation factor 99.7 4.8E-16 1.6E-20 147.7 12.1 134 157-325 194-327 (329)
43 2atv_A RERG, RAS-like estrogen 99.7 1.1E-15 3.6E-20 133.1 13.4 118 171-327 75-193 (196)
44 2q3h_A RAS homolog gene family 99.7 1.6E-15 5.6E-20 132.1 14.5 151 141-328 45-198 (201)
45 3c5c_A RAS-like protein 12; GD 99.7 1.2E-15 4E-20 132.3 13.4 140 139-325 44-186 (187)
46 1x3s_A RAS-related protein RAB 99.7 4.2E-16 1.4E-20 134.5 10.5 118 170-326 62-179 (195)
47 2hxs_A RAB-26, RAS-related pro 99.6 5.3E-16 1.8E-20 131.9 10.8 133 158-328 37-176 (178)
48 1ky3_A GTP-binding protein YPT 99.6 2.6E-15 8.9E-20 127.6 14.9 122 171-328 57-181 (182)
49 4dsu_A GTPase KRAS, isoform 2B 99.6 5.5E-16 1.9E-20 132.9 10.5 118 171-327 51-168 (189)
50 1kao_A RAP2A; GTP-binding prot 99.6 1.6E-15 5.6E-20 126.7 13.0 117 171-325 50-166 (167)
51 3reg_A RHO-like small GTPase; 99.6 6.3E-16 2.2E-20 134.1 10.7 120 171-327 70-190 (194)
52 1z0f_A RAB14, member RAS oncog 99.6 1.8E-15 6.1E-20 128.3 13.1 117 170-325 62-178 (179)
53 3tkl_A RAS-related protein RAB 99.6 4.2E-15 1.4E-19 128.4 15.6 124 165-327 56-181 (196)
54 2oil_A CATX-8, RAS-related pro 99.6 4.1E-15 1.4E-19 128.7 15.3 120 170-328 72-191 (193)
55 2j0v_A RAC-like GTP-binding pr 99.6 1.3E-15 4.5E-20 134.0 12.3 147 139-326 32-181 (212)
56 2bme_A RAB4A, RAS-related prot 99.6 4E-15 1.4E-19 127.5 14.9 123 166-327 51-175 (186)
57 2bcg_Y Protein YP2, GTP-bindin 99.6 5E-15 1.7E-19 129.6 15.6 117 171-326 56-172 (206)
58 3q72_A GTP-binding protein RAD 99.6 3.5E-15 1.2E-19 125.3 13.6 119 170-326 47-165 (166)
59 1r2q_A RAS-related protein RAB 99.6 3.1E-15 1E-19 125.6 13.2 115 170-323 53-167 (170)
60 3dz8_A RAS-related protein RAB 99.6 1.9E-15 6.5E-20 130.9 12.1 118 170-326 70-187 (191)
61 1zbd_A Rabphilin-3A; G protein 99.6 4.2E-15 1.4E-19 129.7 14.1 117 171-326 56-172 (203)
62 3cpj_B GTP-binding protein YPT 99.6 3.5E-15 1.2E-19 132.8 13.9 130 158-326 44-177 (223)
63 1m7b_A RND3/RHOE small GTP-bin 99.6 4.6E-15 1.6E-19 127.7 14.2 150 139-325 30-183 (184)
64 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.9E-15 6.4E-20 128.3 11.5 131 157-325 37-174 (177)
65 2iwr_A Centaurin gamma 1; ANK 99.6 8.7E-15 3E-19 124.6 15.6 119 171-329 53-173 (178)
66 2f7s_A C25KG, RAS-related prot 99.6 1.8E-15 6.3E-20 133.5 11.7 118 171-326 83-200 (217)
67 2ew1_A RAS-related protein RAB 99.6 7.1E-15 2.4E-19 129.4 15.3 123 166-327 67-191 (201)
68 3con_A GTPase NRAS; structural 99.6 1.8E-15 6.1E-20 130.5 11.0 121 171-330 68-188 (190)
69 2o52_A RAS-related protein RAB 99.6 2.9E-15 1E-19 131.1 12.4 123 166-327 66-190 (200)
70 1z2a_A RAS-related protein RAB 99.6 4.5E-15 1.5E-19 124.5 13.1 115 171-325 53-167 (168)
71 3l82_B F-box only protein 4; T 99.6 1.5E-16 5.3E-21 141.1 4.2 112 178-326 108-224 (227)
72 2efe_B Small GTP-binding prote 99.6 4.8E-15 1.6E-19 126.3 13.3 116 171-325 60-175 (181)
73 1z08_A RAS-related protein RAB 99.6 3.4E-15 1.2E-19 125.7 12.2 115 172-325 55-169 (170)
74 2gco_A H9, RHO-related GTP-bin 99.6 6.2E-15 2.1E-19 129.0 14.2 129 171-325 72-200 (201)
75 1ek0_A Protein (GTP-binding pr 99.6 5.1E-15 1.7E-19 124.3 13.1 118 170-323 50-167 (170)
76 2yc2_C IFT27, small RAB-relate 99.6 1.8E-15 6.1E-20 131.8 10.6 120 171-328 72-195 (208)
77 3ihw_A Centg3; RAS, centaurin, 99.6 6.2E-15 2.1E-19 127.6 13.6 138 139-327 43-182 (184)
78 1vg8_A RAS-related protein RAB 99.6 5.4E-15 1.8E-19 129.0 13.1 118 172-327 57-177 (207)
79 3bwd_D RAC-like GTP-binding pr 99.6 3.1E-15 1E-19 127.6 11.2 149 139-324 31-180 (182)
80 1mh1_A RAC1; GTP-binding, GTPa 99.6 4.6E-15 1.6E-19 126.8 12.1 153 139-326 28-181 (186)
81 1z06_A RAS-related protein RAB 99.6 5.7E-15 2E-19 127.5 12.7 122 166-325 61-188 (189)
82 2j1l_A RHO-related GTP-binding 99.6 2.5E-15 8.5E-20 133.1 10.6 131 171-328 81-212 (214)
83 1g16_A RAS-related protein SEC 99.6 2.5E-15 8.4E-20 126.4 9.9 122 165-326 43-166 (170)
84 1gwn_A RHO-related GTP-binding 99.6 1.1E-14 3.9E-19 128.4 14.6 128 171-325 75-204 (205)
85 2lkc_A Translation initiation 99.6 7.3E-15 2.5E-19 124.8 12.4 129 164-329 47-175 (178)
86 3clv_A RAB5 protein, putative; 99.6 7.8E-15 2.7E-19 126.5 12.6 113 172-326 93-205 (208)
87 2fv8_A H6, RHO-related GTP-bin 99.6 7.8E-15 2.7E-19 128.9 12.7 130 171-327 72-202 (207)
88 2fg5_A RAB-22B, RAS-related pr 99.6 3.6E-15 1.2E-19 129.4 10.3 117 170-325 70-186 (192)
89 2y8e_A RAB-protein 6, GH09086P 99.6 1.1E-14 3.7E-19 123.4 13.1 114 172-324 63-176 (179)
90 2ce2_X GTPase HRAS; signaling 99.6 2.9E-15 9.8E-20 124.9 9.3 116 171-325 50-165 (166)
91 4gzl_A RAS-related C3 botulinu 99.6 5.4E-15 1.8E-19 130.0 11.5 148 139-323 53-203 (204)
92 3q85_A GTP-binding protein REM 99.6 8.9E-15 3.1E-19 123.2 12.4 118 171-326 50-168 (169)
93 3cph_A RAS-related protein SEC 99.6 5.5E-15 1.9E-19 129.5 11.1 122 165-326 60-183 (213)
94 1z0j_A RAB-22, RAS-related pro 99.6 2.6E-14 9E-19 120.1 14.4 115 171-324 54-168 (170)
95 2nzj_A GTP-binding protein REM 99.6 1.5E-14 5.1E-19 122.3 12.9 120 171-328 51-172 (175)
96 2il1_A RAB12; G-protein, GDP, 99.6 5.6E-15 1.9E-19 128.3 10.0 118 171-326 74-191 (192)
97 3cbq_A GTP-binding protein REM 99.6 9.9E-15 3.4E-19 127.6 11.1 118 171-326 71-189 (195)
98 2g3y_A GTP-binding protein GEM 99.6 2.5E-14 8.4E-19 127.5 13.6 117 172-326 87-204 (211)
99 3gj0_A GTP-binding nuclear pro 99.6 7.8E-15 2.7E-19 130.1 10.2 115 170-326 62-176 (221)
100 2fh5_B SR-beta, signal recogni 99.6 3E-14 1E-18 125.4 12.9 83 163-254 42-130 (214)
101 2gf0_A GTP-binding protein DI- 99.6 2.3E-15 7.9E-20 130.4 5.7 118 170-326 54-172 (199)
102 2erx_A GTP-binding protein DI- 99.6 1.5E-14 5.1E-19 121.6 10.2 116 171-324 50-166 (172)
103 2p5s_A RAS and EF-hand domain 99.5 1.6E-14 5.6E-19 125.9 10.0 122 171-325 76-197 (199)
104 3l2o_B F-box only protein 4; s 99.5 1.9E-15 6.4E-20 140.1 4.0 112 178-326 193-309 (312)
105 4djt_A GTP-binding nuclear pro 99.5 3.4E-14 1.2E-18 125.3 11.6 131 157-326 41-176 (218)
106 3l0i_B RAS-related protein RAB 99.5 2.4E-15 8.4E-20 131.2 2.5 128 158-324 64-195 (199)
107 2cjw_A GTP-binding protein GEM 99.5 1.4E-13 4.9E-18 119.9 13.5 117 172-326 56-173 (192)
108 3llu_A RAS-related GTP-binding 99.5 8.9E-14 3E-18 121.1 11.1 126 170-323 67-195 (196)
109 2wkq_A NPH1-1, RAS-related C3 99.5 1.7E-13 5.9E-18 128.2 13.2 150 139-325 178-330 (332)
110 3th5_A RAS-related C3 botulinu 99.2 2.1E-15 7.1E-20 132.0 0.0 127 170-324 76-204 (204)
111 2zej_A Dardarin, leucine-rich 99.4 8.6E-14 2.9E-18 120.0 6.7 120 170-325 54-178 (184)
112 1u0l_A Probable GTPase ENGC; p 99.4 1.3E-12 4.6E-17 122.4 11.4 129 139-321 40-169 (301)
113 3r7w_A Gtpase1, GTP-binding pr 99.4 4.3E-13 1.5E-17 126.0 7.9 134 157-323 36-179 (307)
114 2f9l_A RAB11B, member RAS onco 99.4 1E-11 3.5E-16 108.2 15.8 122 166-326 46-169 (199)
115 2dyk_A GTP-binding protein; GT 99.4 1.9E-12 6.5E-17 107.7 10.5 114 162-323 39-160 (161)
116 2wji_A Ferrous iron transport 99.4 5.2E-13 1.8E-17 113.0 7.1 114 164-323 42-163 (165)
117 2qu8_A Putative nucleolar GTP- 99.3 3.9E-12 1.3E-16 113.5 11.1 136 159-327 63-207 (228)
118 3c5h_A Glucocorticoid receptor 99.3 1.4E-12 4.8E-17 119.1 8.3 118 170-324 93-254 (255)
119 2gj8_A MNME, tRNA modification 99.3 3.3E-12 1.1E-16 109.1 7.0 115 162-324 42-165 (172)
120 1oix_A RAS-related protein RAB 99.3 8.2E-11 2.8E-15 102.0 14.9 120 165-323 69-190 (191)
121 1svi_A GTP-binding protein YSX 99.3 1.5E-11 5.1E-16 106.0 9.2 113 171-323 68-193 (195)
122 2wjg_A FEOB, ferrous iron tran 99.3 3.3E-12 1.1E-16 109.4 5.0 119 163-327 45-171 (188)
123 3pqc_A Probable GTP-binding pr 99.2 2.5E-11 8.4E-16 104.1 9.1 116 170-325 66-194 (195)
124 1nrj_B SR-beta, signal recogni 99.2 5.2E-12 1.8E-16 111.2 3.7 75 170-254 53-135 (218)
125 3dpu_A RAB family protein; roc 99.2 6.9E-12 2.4E-16 126.3 4.3 112 171-325 97-208 (535)
126 4dhe_A Probable GTP-binding pr 99.2 5.6E-11 1.9E-15 104.8 9.5 123 169-326 76-212 (223)
127 2cxx_A Probable GTP-binding pr 99.2 9.7E-12 3.3E-16 106.4 3.6 117 173-327 45-186 (190)
128 3a1s_A Iron(II) transport prot 99.2 5.6E-11 1.9E-15 108.9 8.4 119 160-324 40-166 (258)
129 4dcu_A GTP-binding protein ENG 99.1 8E-11 2.7E-15 116.3 7.5 126 164-327 235-371 (456)
130 3iby_A Ferrous iron transport 99.1 3.4E-11 1.2E-15 110.3 4.2 115 162-322 38-164 (256)
131 3i8s_A Ferrous iron transport 99.1 6.8E-11 2.3E-15 109.1 5.2 116 162-323 40-167 (274)
132 3iev_A GTP-binding protein ERA 99.1 3.8E-10 1.3E-14 105.9 10.4 120 164-323 50-180 (308)
133 3b1v_A Ferrous iron uptake tra 99.1 5.6E-11 1.9E-15 109.9 4.4 107 171-323 48-162 (272)
134 3k53_A Ferrous iron transport 99.0 2.9E-10 1E-14 104.4 7.5 119 162-325 40-166 (271)
135 2hjg_A GTP-binding protein ENG 99.0 2.1E-10 7E-15 112.7 6.5 125 164-326 215-350 (436)
136 2ged_A SR-beta, signal recogni 99.0 2.3E-10 7.8E-15 98.4 5.7 75 170-254 89-171 (193)
137 3izy_P Translation initiation 99.0 2.1E-10 7.2E-15 115.5 5.1 117 170-323 50-166 (537)
138 1xzp_A Probable tRNA modificat 99.0 8.4E-10 2.9E-14 109.9 9.2 117 161-325 280-405 (482)
139 3gee_A MNME, tRNA modification 99.0 1.3E-09 4.6E-14 108.3 10.5 120 161-324 270-397 (476)
140 3tr5_A RF-3, peptide chain rel 99.0 2.1E-09 7.2E-14 108.2 11.6 81 158-253 68-148 (528)
141 1mky_A Probable GTP-binding pr 99.0 9E-10 3.1E-14 108.3 8.6 117 164-325 41-166 (439)
142 3j2k_7 ERF3, eukaryotic polype 99.0 2.3E-09 7.9E-14 105.5 10.8 138 156-317 79-217 (439)
143 1lnz_A SPO0B-associated GTP-bi 99.0 6.9E-10 2.4E-14 105.9 6.7 123 166-325 199-330 (342)
144 2e87_A Hypothetical protein PH 98.9 7.5E-09 2.6E-13 98.9 13.7 128 159-326 201-337 (357)
145 3qq5_A Small GTP-binding prote 98.9 6.8E-10 2.3E-14 108.8 6.3 119 159-324 69-195 (423)
146 1wf3_A GTP-binding protein; GT 98.9 4.9E-09 1.7E-13 98.1 11.8 114 167-323 50-171 (301)
147 1wb1_A Translation elongation 98.9 2.6E-09 9E-14 106.3 9.8 131 157-324 58-188 (482)
148 2hjg_A GTP-binding protein ENG 98.9 8.2E-10 2.8E-14 108.5 5.7 113 165-324 44-164 (436)
149 1d2e_A Elongation factor TU (E 98.9 4.6E-09 1.6E-13 101.9 10.4 132 157-323 51-193 (397)
150 1zo1_I IF2, translation initia 98.9 7.5E-10 2.6E-14 110.6 4.5 119 166-321 45-163 (501)
151 2c78_A Elongation factor TU-A; 98.9 6.5E-09 2.2E-13 101.0 10.9 80 159-253 62-142 (405)
152 2elf_A Protein translation elo 98.9 6.3E-09 2.2E-13 100.2 10.5 129 155-324 43-179 (370)
153 3sjy_A Translation initiation 98.9 3.6E-09 1.2E-13 102.8 8.8 116 172-323 75-190 (403)
154 3cb4_D GTP-binding protein LEP 98.9 2.8E-09 9.5E-14 108.7 8.2 127 156-324 50-181 (599)
155 3geh_A MNME, tRNA modification 98.9 3.9E-09 1.3E-13 104.6 9.0 114 164-326 264-385 (462)
156 3p26_A Elongation factor 1 alp 98.9 3.4E-09 1.2E-13 105.5 8.5 131 158-314 97-227 (483)
157 2ywe_A GTP-binding protein LEP 98.9 3.7E-09 1.3E-13 107.7 8.5 126 157-324 53-183 (600)
158 1g7s_A Translation initiation 98.8 1.1E-08 3.9E-13 104.1 11.0 134 173-324 71-217 (594)
159 1zun_B Sulfate adenylate trans 98.8 5.8E-09 2E-13 102.3 8.1 128 157-317 89-216 (434)
160 1dar_A EF-G, elongation factor 98.8 2.3E-08 7.7E-13 103.8 12.7 85 155-254 60-144 (691)
161 1s0u_A EIF-2-gamma, translatio 98.8 1.9E-08 6.4E-13 97.9 11.1 117 172-324 81-197 (408)
162 1jny_A EF-1-alpha, elongation 98.8 5.5E-09 1.9E-13 102.6 7.1 138 156-317 68-205 (435)
163 1mky_A Probable GTP-binding pr 98.8 2.3E-08 8E-13 98.1 11.4 125 164-326 220-356 (439)
164 1r5b_A Eukaryotic peptide chai 98.8 1.5E-09 5.1E-14 107.6 2.8 138 155-316 104-243 (467)
165 2qtf_A Protein HFLX, GTP-bindi 98.8 2.3E-08 7.9E-13 96.0 10.8 136 158-327 212-356 (364)
166 2rdo_7 EF-G, elongation factor 98.8 4.4E-08 1.5E-12 101.8 13.1 84 156-254 59-149 (704)
167 4dcu_A GTP-binding protein ENG 98.7 8E-09 2.7E-13 101.9 4.8 111 166-323 65-183 (456)
168 2xex_A Elongation factor G; GT 98.7 9.2E-08 3.2E-12 99.2 12.6 85 155-254 58-142 (693)
169 1f60_A Elongation factor EEF1A 98.7 2.4E-08 8.1E-13 98.8 7.6 132 157-315 70-202 (458)
170 1kk1_A EIF2gamma; initiation o 98.7 4.2E-08 1.4E-12 95.4 9.1 117 172-324 83-199 (410)
171 3izq_1 HBS1P, elongation facto 98.7 2.4E-08 8.2E-13 102.2 7.3 131 159-315 232-362 (611)
172 2xtp_A GTPase IMAP family memb 98.6 5.8E-08 2E-12 88.0 8.6 138 159-326 58-209 (260)
173 3avx_A Elongation factor TS, e 98.6 5.9E-08 2E-12 104.6 9.4 130 159-323 346-484 (1289)
174 3lxw_A GTPase IMAP family memb 98.6 1.1E-07 3.7E-12 86.2 9.5 86 159-254 57-154 (247)
175 2dy1_A Elongation factor G; tr 98.6 8E-08 2.7E-12 99.2 9.6 79 159-252 61-139 (665)
176 3lxx_A GTPase IMAP family memb 98.6 2.3E-07 7.8E-12 83.0 11.1 85 159-254 65-160 (239)
177 1ega_A Protein (GTP-binding pr 98.6 1.5E-07 5.1E-12 87.9 9.7 112 167-322 51-172 (301)
178 3mca_A HBS1, elongation factor 98.6 2.3E-08 7.9E-13 101.9 3.8 128 157-313 240-371 (592)
179 2h5e_A Peptide chain release f 98.6 2E-07 6.8E-12 93.8 10.5 83 156-253 66-148 (529)
180 3t5d_A Septin-7; GTP-binding p 98.5 7.5E-08 2.6E-12 88.4 6.4 125 157-322 46-201 (274)
181 2aka_B Dynamin-1; fusion prote 98.5 5.3E-08 1.8E-12 89.7 4.9 111 171-321 124-249 (299)
182 2yv5_A YJEQ protein; hydrolase 98.5 2.1E-07 7.3E-12 86.9 8.8 100 181-320 65-164 (302)
183 2qag_A Septin-2, protein NEDD5 98.5 5.1E-08 1.8E-12 93.5 3.9 127 157-326 76-234 (361)
184 3ec1_A YQEH GTPase; atnos1, at 98.4 8.2E-07 2.8E-11 85.3 8.5 105 180-323 56-160 (369)
185 3h2y_A GTPase family protein; 98.3 4.8E-07 1.6E-11 86.9 5.4 103 181-322 55-157 (368)
186 3def_A T7I23.11 protein; chlor 98.3 1.1E-06 3.9E-11 79.9 7.6 85 159-253 71-165 (262)
187 1pui_A ENGB, probable GTP-bind 98.3 4E-06 1.4E-10 72.6 9.9 118 167-324 68-198 (210)
188 1n0u_A EF-2, elongation factor 98.2 1.4E-06 4.8E-11 92.2 6.7 68 171-253 97-164 (842)
189 1yrb_A ATP(GTP)binding protein 98.1 3.9E-06 1.3E-10 75.5 7.7 131 172-324 109-256 (262)
190 3vqt_A RF-3, peptide chain rel 98.1 1.7E-05 5.9E-10 80.0 12.4 93 143-254 75-167 (548)
191 2j69_A Bacterial dynamin-like 98.1 4.8E-06 1.6E-10 86.3 8.6 128 172-325 174-325 (695)
192 3p32_A Probable GTPase RV1496/ 98.1 1.3E-05 4.4E-10 76.4 9.6 114 170-325 170-284 (355)
193 3t34_A Dynamin-related protein 98.1 3.8E-06 1.3E-10 80.0 5.9 71 171-254 135-218 (360)
194 1h65_A Chloroplast outer envel 98.0 1.2E-05 4.1E-10 73.3 8.5 79 164-253 79-168 (270)
195 1udx_A The GTP-binding protein 98.0 1.1E-05 3.8E-10 78.6 8.5 118 167-325 199-325 (416)
196 2wsm_A Hydrogenase expression/ 98.0 2.4E-05 8.1E-10 68.4 9.8 108 170-325 107-214 (221)
197 1jwy_B Dynamin A GTPase domain 98.0 6E-06 2.1E-10 76.5 5.9 72 170-254 129-213 (315)
198 2x2e_A Dynamin-1; nitration, h 97.9 4E-06 1.4E-10 79.8 3.0 111 171-321 129-254 (353)
199 3j25_A Tetracycline resistance 97.8 7.8E-06 2.7E-10 83.9 3.3 93 143-254 42-134 (638)
200 2p67_A LAO/AO transport system 97.5 0.00022 7.6E-09 67.4 8.3 113 170-324 147-260 (341)
201 4fn5_A EF-G 1, elongation fact 97.5 0.00028 9.6E-09 73.2 9.4 86 154-254 60-152 (709)
202 2qpt_A EH domain-containing pr 97.5 5.1E-05 1.7E-09 76.6 3.6 68 172-253 154-232 (550)
203 2qnr_A Septin-2, protein NEDD5 97.4 3.9E-05 1.3E-09 71.4 1.7 110 172-325 76-214 (301)
204 2www_A Methylmalonic aciduria 97.4 0.00063 2.2E-08 64.5 9.6 112 170-323 165-277 (349)
205 1wxq_A GTP-binding protein; st 97.3 9.9E-05 3.4E-09 71.5 3.7 37 172-208 71-114 (397)
206 1puj_A YLQF, conserved hypothe 97.2 0.00017 5.7E-09 66.6 3.4 99 180-325 8-106 (282)
207 2hf9_A Probable hydrogenase ni 97.1 0.00078 2.7E-08 58.7 6.5 60 240-325 165-224 (226)
208 1jal_A YCHF protein; nucleotid 96.7 0.0041 1.4E-07 59.3 8.2 37 172-208 66-109 (363)
209 3zvr_A Dynamin-1; hydrolase, D 96.6 0.00094 3.2E-08 69.6 3.8 70 171-254 149-232 (772)
210 2dby_A GTP-binding protein; GD 96.5 0.0019 6.7E-08 61.7 5.0 38 171-208 68-112 (368)
211 2qag_C Septin-7; cell cycle, c 96.5 0.0058 2E-07 59.4 7.9 59 238-322 166-224 (418)
212 3cnl_A YLQF, putative uncharac 96.1 0.0086 2.9E-07 54.4 6.4 88 184-321 10-97 (262)
213 2qm8_A GTPase/ATPase; G protei 95.7 0.016 5.5E-07 54.5 6.5 111 170-323 146-259 (337)
214 2ohf_A Protein OLA1, GTP-bindi 94.6 0.032 1.1E-06 53.8 5.2 39 172-210 86-131 (396)
215 1t9h_A YLOQ, probable GTPase E 94.4 0.025 8.6E-07 52.6 3.8 51 191-254 82-132 (307)
216 2rcn_A Probable GTPase ENGC; Y 93.3 0.084 2.9E-06 50.1 5.2 87 192-319 127-213 (358)
217 4a9a_A Ribosome-interacting GT 90.6 0.21 7.1E-06 47.7 4.5 78 163-252 110-195 (376)
218 2j37_W Signal recognition part 76.5 3.7 0.00013 40.6 6.2 65 170-252 182-253 (504)
219 1ni3_A YCHF GTPase, YCHF GTP-b 68.9 3.7 0.00013 39.2 4.0 36 172-207 85-127 (392)
220 4dzz_A Plasmid partitioning pr 56.4 17 0.00058 30.0 5.5 66 172-251 76-142 (206)
221 3end_A Light-independent proto 51.9 45 0.0015 29.6 8.0 69 171-251 156-225 (307)
222 3cwq_A Para family chromosome 48.2 24 0.00083 29.7 5.2 66 171-252 67-133 (209)
223 2v3c_C SRP54, signal recogniti 46.7 36 0.0012 32.6 6.8 65 170-252 179-251 (432)
224 2ph1_A Nucleotide-binding prot 46.6 41 0.0014 29.2 6.6 66 171-251 128-194 (262)
225 3dm5_A SRP54, signal recogniti 44.3 19 0.00063 34.9 4.2 66 171-253 182-253 (443)
226 1j8m_F SRP54, signal recogniti 43.5 31 0.0011 31.2 5.4 65 170-252 179-252 (297)
227 3kjh_A CO dehydrogenase/acetyl 41.5 42 0.0014 28.2 5.8 65 171-251 131-195 (254)
228 1g3q_A MIND ATPase, cell divis 37.1 44 0.0015 28.1 5.2 65 171-251 111-175 (237)
229 1wcv_1 SOJ, segregation protei 34.9 61 0.0021 27.9 5.9 71 170-251 110-181 (257)
230 3ea0_A ATPase, para family; al 32.8 80 0.0028 26.5 6.2 68 171-252 118-185 (245)
231 1jey_A KU70; double-strand DNA 32.3 41 0.0014 33.7 4.7 55 193-249 32-92 (609)
232 3kl4_A SRP54, signal recogniti 30.2 44 0.0015 32.1 4.3 64 171-252 179-251 (433)
233 1hyq_A MIND, cell division inh 29.2 48 0.0016 28.5 4.1 66 171-252 110-175 (263)
234 3q9l_A Septum site-determining 29.2 41 0.0014 28.7 3.6 68 171-251 113-185 (260)
235 3k9g_A PF-32 protein; ssgcid, 28.8 1.2E+02 0.0042 25.9 6.8 65 171-250 144-208 (267)
236 1jey_B KU80; double-strand DNA 26.1 68 0.0023 31.7 5.0 51 197-249 8-63 (565)
237 1bif_A 6-phosphofructo-2-kinas 23.9 85 0.0029 30.0 5.2 37 172-208 87-133 (469)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=1.4e-75 Score=557.67 Aligned_cols=303 Identities=42% Similarity=0.714 Sum_probs=287.8
Q ss_pred eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651 13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS 92 (334)
Q Consensus 13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 92 (334)
-||.|||..||+++|+..||+ +||.|++++|++|++||+.+ +|++++|+++.+++.++...... ..++++
T Consensus 25 KQmkiih~~gfs~~e~~~~~~--~i~~N~~~~~~~li~a~~~l------~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 94 (327)
T 3ohm_A 25 KQMRIIHGSGYSDEDKRGFTK--LVYQNIFTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEK--VSAFEN 94 (327)
T ss_dssp HHHHHHHSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSSTHHHHHHHHHHTCCGGG--CCCCCT
T ss_pred HHHHHHHcCCCCHHHHHHHHH--HHHHhHHHHHHHHHHHHHhc------CCCCCCchhHHHHHHHhcccccc--cccccH
Confidence 378999999999999999999 99999999999999999999 99999999999999998765443 457999
Q ss_pred HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651 93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI 172 (334)
Q Consensus 93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~ 172 (334)
+++++|+.||+||+||+||+|++||+|+|+++|||++++||+. ++|.||.+|+++++.||+|+.+..+.++++
T Consensus 95 e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~-------~~Y~PT~~Dilr~r~~TiGi~~~~~~~~~v 167 (327)
T 3ohm_A 95 PYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD-------PSYLPTQQDVLRVRVPTTGIIEYPFDLQSV 167 (327)
T ss_dssp THHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHS-------TTCCCCHHHHTTCCCCCCSEEEEEEEETTE
T ss_pred HHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhc-------cCCCccccchhcccCceeeEEEEEEEeece
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
++++||||||+++|++|.+||++++++|||+|+|+|||++.|+.+.|+|.+++.+|+++++++++.++|++||+||+||+
T Consensus 168 ~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp EEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred eeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM 332 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~ 332 (334)
++|+ ..+++.+|||+|+|++.+.++|.+||+++|.+++++..+.+++|+|||+|+.||+.+|..|.+.|++++|++.|
T Consensus 248 ~~ki--~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~~~ 325 (327)
T 3ohm_A 248 EEKI--MYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYN 325 (327)
T ss_dssp HHHT--TTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC---
T ss_pred hhhh--ccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHHhcC
Confidence 9999 88899999999999999999999999999999987766889999999999999999999999999999999998
Q ss_pred CC
Q psy3651 333 LQ 334 (334)
Q Consensus 333 l~ 334 (334)
|.
T Consensus 326 l~ 327 (327)
T 3ohm_A 326 LV 327 (327)
T ss_dssp --
T ss_pred CC
Confidence 73
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=5.6e-72 Score=534.77 Aligned_cols=296 Identities=29% Similarity=0.524 Sum_probs=276.9
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHH
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFST 93 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 93 (334)
||.|||..||+++|++.||+ +||.|++++|++|++||+.+ +|++++|.++..+ +... ....+++++
T Consensus 24 Qmkii~~~gfs~~e~~~~~~--~i~~N~~~~~~~li~~~~~l------~i~~~~~~~~~~~---~~~~---~~~~~~~~~ 89 (340)
T 4fid_A 24 QLKILFGGGFPEQERATHKS--SICSNVVTCMRTLIEQSAIL------NHPMKYQPKSKEF---TTED---PVTLPFSPE 89 (340)
T ss_dssp HHHHHTSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSCCCCSGGG---SCCS---CCCSSCCTT
T ss_pred HHHHHhcCCCCHHHHHHHHH--HHHHhHHHHHHHHHHHHHHh------CCCCCChhhHHHH---hhcc---cCCCCCCHH
Confidence 78999999999999999999 99999999999999999999 9999999998766 3332 235689999
Q ss_pred HHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcc
Q psy3651 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIP 173 (334)
Q Consensus 94 ~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~ 173 (334)
++++|+.||+||+||+||+|++||+|+|++.|||++++||+. ++|.||.+|+++++.+|+|+.+..+.+++++
T Consensus 90 ~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~-------~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v~ 162 (340)
T 4fid_A 90 LVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAM-------EDYVPTEEDLIHNRTKTTGIHEYDFVVKDIP 162 (340)
T ss_dssp HHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSS-------TTCCCCHHHHHHSCCCCCSCEEEEEESSSCE
T ss_pred HHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhc-------ccCCccccceeecccceeeeEEEEEEeeeee
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+++||||||+++|++|.+||+++++||||+|+|+|||++.|+.+.++|.+++.+|+++++++++.++|++||+||+||++
T Consensus 163 l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred eccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH------HhhccCCC-----------CCeEEEEEeeecCchHHHHH
Q psy3651 254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF------KAVKRDEK-----------KPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 254 eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F------~~l~~~~~-----------~~i~~~~tsA~d~~nI~~vf 316 (334)
+|+ ..++++++||+|+|++ +.++|.+||.++| .++++... +.+++|+|||+|+.||+.+|
T Consensus 243 eki--~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 243 EKL--TKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHH--HHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhc--CcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 999 8899999999999987 7999999999999 77765544 67999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCC
Q psy3651 317 NAVKNTILHRNLRDLMLQ 334 (334)
Q Consensus 317 ~~v~~~I~~~~l~~~~l~ 334 (334)
..|.++|++ +|++.|+.
T Consensus 320 ~~v~~~Il~-~l~~~~~~ 336 (340)
T 4fid_A 320 MLAVDVIMK-NMAANGKM 336 (340)
T ss_dssp HHHHHHHHH-HHHHTTCC
T ss_pred HHHHHHHHH-HHHHcCCC
Confidence 999999999 99998863
No 3
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=1.2e-68 Score=515.82 Aligned_cols=302 Identities=35% Similarity=0.647 Sum_probs=279.6
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHH
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFST 93 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 93 (334)
||.|||..||+++|+..||+ +||.|++++|++|++||+.+ +|+++++.++..++.++.+.... .+..++++
T Consensus 51 Qmkii~~~g~~~~e~~~~~~--~i~~N~~~~~~~l~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 121 (353)
T 1cip_A 51 QMKIIHEAGYSEEECKQYKA--VVYSNTIQSIIAIIRAMGRL------KIDFGDAARADDARQLFVLAGAA-EEGFMTAE 121 (353)
T ss_dssp HHHHHHSCCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHH------TCCCSSTTHHHHHHHHHHHHHHH-TTTCCCHH
T ss_pred HHHHhhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh------CCCCCCcchHHHHHHHHhhcccc-ccccCCHH
Confidence 78899999999999999999 99999999999999999999 99999999999999888764432 23579999
Q ss_pred HHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcc
Q psy3651 94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIP 173 (334)
Q Consensus 94 ~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~ 173 (334)
++++|+.||+||+||+||.++++|+|+|+++|||++++||+. ++|.||.+|+++++.||+|+++..+.+++++
T Consensus 122 ~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~-------~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~ 194 (353)
T 1cip_A 122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRVKTTGIVETHFTFKDLH 194 (353)
T ss_dssp HHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHTCCCCCCSEEEEEEEETTEE
T ss_pred HHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhc-------CCCCCCccccccccCceeceEEEEEeeCCee
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
+++||||||+++|++|.+||+++++||||+|+|+||+++.||++.|+|.+++.+|+++++++++.++|+|||+||+||+.
T Consensus 195 l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 274 (353)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC-CCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651 254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM 332 (334)
Q Consensus 254 eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~-~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~ 332 (334)
+|+ ..++++++||+|.|. .+.+++.+|+..+|.++.+.. .+.+++|+|||++|.||+++|++|.+.|++.+|++.|
T Consensus 275 ~ki--~~~~l~~~fp~~~g~-~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~ 351 (353)
T 1cip_A 275 EKI--KKSPLTICYPEYAGS-NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCG 351 (353)
T ss_dssp HHH--TTSCGGGTCTTCCSC-SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-----
T ss_pred hhc--cccchhhcccccCCC-CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcC
Confidence 999 789999999999986 578889999999999987642 4789999999999999999999999999999999998
Q ss_pred CC
Q psy3651 333 LQ 334 (334)
Q Consensus 333 l~ 334 (334)
|.
T Consensus 352 l~ 353 (353)
T 1cip_A 352 LF 353 (353)
T ss_dssp --
T ss_pred CC
Confidence 74
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=8.4e-68 Score=511.42 Aligned_cols=302 Identities=52% Similarity=0.894 Sum_probs=272.6
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCc-------C
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC-------I 86 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------~ 86 (334)
||.++|..||+++|+..+|+ +|+.|++++|+.|++||+.+ +|++++|.++..++.++.+..... .
T Consensus 52 q~~i~~~~~~~~~e~~~~~~--~i~~n~~~s~~~il~a~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 123 (362)
T 1zcb_A 52 QMRIIHGQDFDQRAREEFRP--TIYSNVIKGMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVE 123 (362)
T ss_dssp HHHHHHSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCC
T ss_pred HHHHHhCCCCCcccHHHHHH--HHHHHHHHHHHHHHHHHHHc------CCCCCCcccHHHHHHHHhhcccccccccccCc
Confidence 57899999999999999999 99999999999999999999 999999999988888887644210 1
Q ss_pred CCcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE
Q psy3651 87 DSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT 166 (334)
Q Consensus 87 ~~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~ 166 (334)
...+ ++++++|+.||+||+||+||.|+++|+|+|+++|||++++||+. ++|.||.+|+++++.+|+|+.+..
T Consensus 124 ~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~-------~~Y~PT~~Dil~~r~~T~Gi~~~~ 195 (362)
T 1zcb_A 124 TRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGV-------PDYIPSQQDILLARRPTKGIHEYD 195 (362)
T ss_dssp HHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHHCCCCCSSEEEEE
T ss_pred chhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhc-------CCCCCChhhhhhccCCccceEEEE
Confidence 1356 89999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
+.++++++++||||||+++|++|.+||+++++||||+|+|+|||+|.||++.|+|.+++.+|+++++++++.++|+|||+
T Consensus 196 ~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 196 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 275 (362)
T ss_dssp EEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred eeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC-CCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~-~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
||+||+++|+ ..++++.+||+|+|.+.+.+++.+|+.++|.++.+.. .+.+++|+|||++|+||+++|++|.+.|++
T Consensus 276 NK~DL~~~ki--~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 276 NKTDLLEEKV--QVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp ECHHHHHHHT--TTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EChhhhhhhc--cccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 9999999999 8899999999999986788999999999999987643 467999999999999999999999999999
Q ss_pred HhhhhccCC
Q psy3651 326 RNLRDLMLQ 334 (334)
Q Consensus 326 ~~l~~~~l~ 334 (334)
++|++ ||.
T Consensus 354 ~~l~~-~l~ 361 (362)
T 1zcb_A 354 DNLKQ-LML 361 (362)
T ss_dssp HHHC-----
T ss_pred HHHHh-hcc
Confidence 99998 863
No 5
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=3.6e-67 Score=511.72 Aligned_cols=305 Identities=37% Similarity=0.613 Sum_probs=275.3
Q ss_pred eeeeeeccCCCcc---------------cchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHh
Q psy3651 14 RACVFHVRLYFSV---------------ECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIF 78 (334)
Q Consensus 14 ~~~~~~~~~~~~~---------------e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~ 78 (334)
||.|||..||+++ |+..+|+ +||.|++++|++|++||+.+ ++.|++++|.++..++.++
T Consensus 59 Qmkiih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~--~i~~Ni~~~~~~i~~a~~~l----~~~i~~~~~~~~~~~~~~~ 132 (402)
T 1azs_C 59 QMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQ--DIKNNLKEAIETIVAAMSNL----VPPVELANPENQFRVDYIL 132 (402)
T ss_dssp HHHHHHCCC-------------------CTTHHHH--HHHHHHHHHHHHHHHHHHHS----SSCCCCSSGGGHHHHHHHH
T ss_pred HHHHHhCCCCChHHhhhhHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHhc----CCCcccCCchhHHHHHHHH
Confidence 7899999999986 6778889 99999999999999999999 3338899999998899888
Q ss_pred cccCCCcCCCcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeee
Q psy3651 79 QFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKA 158 (334)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~ 158 (334)
...... +..++++++++|+.||+||+||+||.|+++|+|+|+++|||++++||+. ++|.||.+|+++++.+
T Consensus 133 ~~~~~~--~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~-------~~Y~PT~~Dil~~r~~ 203 (402)
T 1azs_C 133 SVMNVP--DFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLLRCRVL 203 (402)
T ss_dssp HTTTCS--SCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTC-------TTCCCCHHHHHHCCCC
T ss_pred hhcccC--CCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhc-------cccCCccccccccccc
Confidence 765432 4579999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+|+.+..|.+++++++|||||||+++|++|.+||+++++||||+|+|+|||++.||++.++|.++..||+++++++++.
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcchhhhccccchhhhhCCCCCC------------CCccHHHHHHHHHHHHHhhccC---CCCCeEEEE
Q psy3651 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG------------DPQDMQAVQTFLLNYFKAVKRD---EKKPLFHHF 303 (334)
Q Consensus 239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g------------~~~~~~~~~~fi~~~F~~l~~~---~~~~i~~~~ 303 (334)
++|++||+||+||+.+|+....+++.+|||+|.| .+.+.+.|..||+++|.++.+. ..+.+++|+
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 9999999999999998872115689999999985 2235788999999999887543 125799999
Q ss_pred EeeecCchHHHHHHHHHHHHHHHhhhhccC
Q psy3651 304 TTAVDTENIKIVFNAVKNTILHRNLRDLML 333 (334)
Q Consensus 304 tsA~d~~nI~~vf~~v~~~I~~~~l~~~~l 333 (334)
|||+||+||+.+|.+|.+.|++.+|+..||
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~~~l~~~~~ 393 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEeecCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999886
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=3e-64 Score=485.10 Aligned_cols=303 Identities=28% Similarity=0.454 Sum_probs=266.9
Q ss_pred eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcC-------CCcchHHHHHHhcccCCCcC
Q psy3651 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQ-------NDMNAIHAEKIFQFDNNTCI 86 (334)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~-------~~~~~~~~~~i~~~~~~~~~ 86 (334)
+|.++|..||+++|+..+|+ +|+.|++++|++|++||+.+ ++++. +|+++..+..+....... .
T Consensus 28 q~~~~~~~g~~~~e~~~~~~--~i~~Ni~~~~~~ll~a~~~l------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~ 98 (354)
T 2xtz_A 28 QIKLLFQTGFDEGELKSYVP--VIHANVYQTIKLLHDGTKEF------AQNETDSAKYMLSSESIAIGEKLSEIGGRL-D 98 (354)
T ss_dssp HHHHHHSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHH------HHHCSSCCTTCCCHHHHHHHHHHHHHHHHC-S
T ss_pred HHHHHhcCCCCchhHHHHHH--HHHHHHHHHHHHHHHHHHHh------CCCccccccccCChhHHHHHHHHHhccccc-c
Confidence 67899999999999999999 99999999999999999998 55444 456666676665543222 2
Q ss_pred CCcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE
Q psy3651 87 DSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT 166 (334)
Q Consensus 87 ~~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~ 166 (334)
.+.++++++++|+.||+||+||+||.|++||+|+|+++|||++++||+. ++|.||.+|+++++.+|+|+.+..
T Consensus 99 ~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~-------~~Y~PT~~D~~~~r~~T~Gi~e~~ 171 (354)
T 2xtz_A 99 YPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSD-------INYIPTKEDVLYARVRTTGVVEIQ 171 (354)
T ss_dssp SCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHS-------TTCCCCHHHHHHCCCCCCSEEEEE
T ss_pred cccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhc-------CCCCCCchheeeecccccceeeEE
Confidence 3578999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEe------eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651 167 IVI------SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV 240 (334)
Q Consensus 167 ~~~------~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~ 240 (334)
|.+ +.+++++||||||+++|++|.+||++++++|||+|+++|||+|.|+.+.++|++++.+|+++++++++.++
T Consensus 172 f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 172 FSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred EEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 988 45899999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cEEEEEeCCCcchhhhccccchhhh--hCCCCCCC---CccHHHHHHHHHHHHHhhcc---CC---CCCeEEEEEeeecC
Q psy3651 241 SFILFLNKTDLLAEKLRTSKTSIAE--HFPEFEGD---PQDMQAVQTFLLNYFKAVKR---DE---KKPLFHHFTTAVDT 309 (334)
Q Consensus 241 piiL~lNK~Dl~~eki~~~~~~l~~--~Fp~y~g~---~~~~~~~~~fi~~~F~~l~~---~~---~~~i~~~~tsA~d~ 309 (334)
|++||+||+||+.+|+ ..++++. +||+|.+. +.+.+++.+|+.++|.++.+ .+ .+.+++|+|||++|
T Consensus 252 piiLvgNK~DL~~~k~--~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKV--LDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp EEEEEEECHHHHHHHT--TTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred eEEEEEECcchhhhhc--ccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 9999999999999988 6667765 49999742 34678899999999987731 11 25688899999999
Q ss_pred chHHHHHHHHHHHHHHHhhhhccCC
Q psy3651 310 ENIKIVFNAVKNTILHRNLRDLMLQ 334 (334)
Q Consensus 310 ~nI~~vf~~v~~~I~~~~l~~~~l~ 334 (334)
+||+++|++|.+.|++++|+..||.
T Consensus 330 ~nV~~vF~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 330 KLVKKTFKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999874
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.81 E-value=2e-19 Score=161.36 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=99.9
Q ss_pred HHHHHhhhCCCCCCCCCCCcccccceeeeecceeE--EEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651 130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITE--FTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS 205 (334)
Q Consensus 130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~--~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl 205 (334)
+.|++. +.|.+.|.||. |++. ..+.+ ..++++||||+||+.++..|..||++++++|+|+|+
T Consensus 30 i~r~~~---~~f~~~~~~Ti-----------g~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di 95 (216)
T 4dkx_A 30 ITRFMY---DSFDNTYQATI-----------GIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDI 95 (216)
T ss_dssp HHHHHH---SCCC---------------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEET
T ss_pred HHHHHh---CCCCCCcCCcc-----------ceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeec
Confidence 345555 55666677655 3332 12222 337789999999999999999999999999999999
Q ss_pred CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL 285 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~ 285 (334)
++. .++.....|+..+.... ..++|++||+||+||..++. . +.+++.+|..
T Consensus 96 ~~~----------~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~----V--------------~~~e~~~~a~ 146 (216)
T 4dkx_A 96 TNV----------NSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQ----V--------------SIEEGERKAK 146 (216)
T ss_dssp TCH----------HHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCC----S--------------CHHHHHHHHH
T ss_pred chh----------HHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCc----c--------------cHHHHhhHHH
Confidence 998 77888888888876653 36789999999999976532 1 2233333333
Q ss_pred HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+ .++.+++|||+++.||+++|+.|.+.|.+
T Consensus 147 ~----------~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 147 E----------LNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp H----------HTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred H----------hCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 2 24678999999999999999999988764
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=2.3e-18 Score=144.72 Aligned_cols=134 Identities=22% Similarity=0.382 Sum_probs=105.1
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.....+..++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 98 (164)
T 1r8s_A 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVNEAREELMRMLAEDE 98 (164)
T ss_dssp CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchh
Confidence 4567766677777889999999999999999999999999999999999997 778888889999887666
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+ . ....+.+. ........+.+.+++|||+++.||+++|
T Consensus 99 ~~~~piilv~nK~Dl~~~-~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 99 LRDAVLLVFANKQDLPNA-M--NAAEITDK----------------------LGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp GTTCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred hcCCeEEEEEECcCCcCC-C--CHHHHHHH----------------------hCcccccCccEEEEEcccCCCcCHHHHH
Confidence 678999999999998653 1 11112111 1111122356789999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 9
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.77 E-value=6.4e-18 Score=142.72 Aligned_cols=134 Identities=18% Similarity=0.296 Sum_probs=107.7
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..++....
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 105 (171)
T 1upt_A 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR----------DRIGISKSELVAMLEEEE 105 (171)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCC----------TTHHHHHHHHHHHHTCGG
T ss_pred CCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchh
Confidence 4577777777888899999999999999999999999999999999999997 788888899999887665
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+. ....+.+. ..........+.+++|||+++.||.++|
T Consensus 106 ~~~~piilv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAM---TSSEMANS----------------------LGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------HTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred hCCCEEEEEEECCCCcCCC---CHHHHHHH----------------------hCchhccCCceEEEECcCCCCcCHHHHH
Confidence 6789999999999986542 11111111 1112222356789999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
+++.+.+.+
T Consensus 161 ~~l~~~i~~ 169 (171)
T 1upt_A 161 EWLVETLKS 169 (171)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999988764
No 10
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=1.9e-18 Score=149.21 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=106.9
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..||.|+....+.+++..+.+||++||+.++..|..|+++++++|||+|+++. .++.+...++..++...
T Consensus 44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~ 113 (181)
T 1fzq_A 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR----------KRFEETGQELTELLEEE 113 (181)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHHTTCG
T ss_pred ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHhCh
Confidence 46788888778888899999999999999999999999999999999999997 77888888888887765
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
...+.|++|++||+|+..+. ....+.+. .++.....+.+.+++|||+++.||.++
T Consensus 114 ~~~~~piilv~NK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 114 KLSCVPVLIFANKQDLLTAA---PASEIAEG----------------------LNLHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp GGTTCCEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred hhcCCCEEEEEECcCcccCC---CHHHHHHH----------------------hCchhccCCceEEEEccCCCCCCHHHH
Confidence 55789999999999986542 11112111 122222335678999999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 316 FNAVKNTILH 325 (334)
Q Consensus 316 f~~v~~~I~~ 325 (334)
|+++.+.+.+
T Consensus 169 ~~~l~~~~~~ 178 (181)
T 1fzq_A 169 MNWVCKNVNA 178 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHh
Confidence 9999887754
No 11
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.76 E-value=8.2e-18 Score=145.34 Aligned_cols=137 Identities=20% Similarity=0.321 Sum_probs=110.0
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..++....
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 120 (189)
T 2x77_A 51 VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDR----------DRMGVAKHELYALLDEDE 120 (189)
T ss_dssp CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCC----------TTHHHHHHHHHHHHTCST
T ss_pred CCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhhhh
Confidence 5678887778888899999999999999999999999999999999999997 788888899999888766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+. ....+.+. ........+.+.+++|||+++.||+++|
T Consensus 121 ~~~~piilv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 121 LRKSLLLIFANKQDLPDAA---SEAEIAEQ----------------------LGVSSIMNRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp TTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred cCCCeEEEEEECCCCcCCC---CHHHHHHH----------------------hChhhccCCceEEEEccCCCccCHHHHH
Confidence 6789999999999986531 11112111 1111223356789999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy3651 317 NAVKNTILHRNL 328 (334)
Q Consensus 317 ~~v~~~I~~~~l 328 (334)
+++.+.+.++.+
T Consensus 176 ~~l~~~i~~~~~ 187 (189)
T 2x77_A 176 DWLVERLREQGL 187 (189)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHhccc
Confidence 999998876543
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.75 E-value=1.5e-17 Score=143.14 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=105.6
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..+|+|.....+.+++..+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+....
T Consensus 49 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~ 118 (181)
T 2h17_A 49 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR----------ERISVTREELYKMLAHE 118 (181)
T ss_dssp EECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCT----------TTHHHHHHHHHHHHTCG
T ss_pred cCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCh
Confidence 45778887778888899999999999999999999999999999999999997 78888889999988765
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
...+.|++|++||+|+..+ . ....+.+. ..+.......+.+++|||+++.||+++
T Consensus 119 ~~~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 119 DLRKAGLLIFANKQDVKEC-M--TVAEISQF----------------------LKLTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp GGTTCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred hhCCCeEEEEEECCCcccC-C--CHHHHHHH----------------------hCcccccCCceEEEEccCCCCcCHHHH
Confidence 4578999999999998653 1 11122221 122222235678999999999999999
Q ss_pred HHHHHHH
Q psy3651 316 FNAVKNT 322 (334)
Q Consensus 316 f~~v~~~ 322 (334)
|+++.+.
T Consensus 174 ~~~l~~~ 180 (181)
T 2h17_A 174 LEWMMSR 180 (181)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9998753
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=1e-17 Score=145.31 Aligned_cols=136 Identities=21% Similarity=0.356 Sum_probs=105.5
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
+|+|.....+...+..+.+||++|++.++..|..|+++++++|||+|+++. .++.+...++..++.....
T Consensus 49 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~~~ 118 (199)
T 4bas_A 49 ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH----------LRLCVVKSEIQAMLKHEDI 118 (199)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTSHHH
T ss_pred cccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH----------HHHHHHHHHHHHHHhChhh
Confidence 466666667777889999999999999999999999999999999999997 7788888888888765322
Q ss_pred -------CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecC
Q psy3651 238 -------RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDT 309 (334)
Q Consensus 238 -------~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~ 309 (334)
.+.|++||+||+|+..+. ....+.+. + .+... ....+.+++|||+++
T Consensus 119 ~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~Sa~~g 173 (199)
T 4bas_A 119 RRELPGGGRVPFLFFANKMDAAGAK---TAAELVEI-----------------L-----DLTTLMGDHPFVIFASNGLKG 173 (199)
T ss_dssp HSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHH-----------------H-----THHHHHTTSCEEEEECBTTTT
T ss_pred hhcccccCCCCEEEEEECcCCCCCC---CHHHHHHH-----------------h-----cchhhccCCeeEEEEeeCCCc
Confidence 278999999999986642 11122211 1 11111 235688999999999
Q ss_pred chHHHHHHHHHHHHHHHhh
Q psy3651 310 ENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 310 ~nI~~vf~~v~~~I~~~~l 328 (334)
.||.++|+++.+.+.+..-
T Consensus 174 ~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 174 TGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp BTHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHHHhc
Confidence 9999999999999887643
No 14
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.5e-17 Score=142.37 Aligned_cols=137 Identities=19% Similarity=0.322 Sum_probs=105.9
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
..||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+....
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~ 115 (183)
T 1moz_A 46 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK----------DRMSTASKELHLMLQEE 115 (183)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCT----------TTHHHHHHHHHHHTTSS
T ss_pred cCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHcCh
Confidence 45678877778888889999999999999999999999999999999999997 78888889999888765
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
...+.|++|++||+|+..+ . ....+.+. ..........+.+++|||+++.||+++
T Consensus 116 ~~~~~piilv~nK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 116 ELQDAALLVFANKQDQPGA-L--SASEVSKE----------------------LNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp TTSSCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred hhCCCeEEEEEECCCCCCC-C--CHHHHHHH----------------------hCcccccCCceEEEEccCCCCcCHHHH
Confidence 5678999999999998653 1 22222221 111112235678999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy3651 316 FNAVKNTILHRN 327 (334)
Q Consensus 316 f~~v~~~I~~~~ 327 (334)
|+++.+.+.++.
T Consensus 171 ~~~l~~~~~~~q 182 (183)
T 1moz_A 171 LDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999887653
No 15
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=1.1e-17 Score=144.01 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=107.6
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.....
T Consensus 47 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 116 (186)
T 1ksh_A 47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQRELQSLLVEER 116 (186)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred cccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHhChh
Confidence 4566777777777889999999999999999999999999999999999997 778888889999888765
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+. ....+.+. .++.......+.+++|||+++.||+++|
T Consensus 117 ~~~~piilv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 117 LAGATLLIFANKQDLPGAL---SCNAIQEA----------------------LELDSIRSHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred cCCCcEEEEEeCccCCCCC---CHHHHHHH----------------------hChhhccCCceEEEEeeCCCCCCHHHHH
Confidence 6789999999999986542 11112211 1222222356789999999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 317 NAVKNTILHR 326 (334)
Q Consensus 317 ~~v~~~I~~~ 326 (334)
+++.+.+.++
T Consensus 172 ~~l~~~i~~~ 181 (186)
T 1ksh_A 172 DWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 16
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.1e-17 Score=142.70 Aligned_cols=133 Identities=20% Similarity=0.327 Sum_probs=102.9
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.....
T Consensus 45 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 114 (187)
T 1zj6_A 45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR----------ERISVTREELYKMLAHED 114 (187)
T ss_dssp ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCT----------TTHHHHHHHHHHHHTSGG
T ss_pred cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhchh
Confidence 5678877778888899999999999999999999999999999999999997 788888899999887655
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+ . ....+.+. ..........+.+++|||+++.||+++|
T Consensus 115 ~~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 115 LRKAGLLIFANKQDVKEC-M--TVAEISQF----------------------LKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp GTTCEEEEEEECTTSTTC-C--CHHHHHHH----------------------HTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred hCCCeEEEEEECCCCcCC-C--CHHHHHHH----------------------hChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 578999999999998653 1 11111111 1221122356789999999999999999
Q ss_pred HHHHHHHH
Q psy3651 317 NAVKNTIL 324 (334)
Q Consensus 317 ~~v~~~I~ 324 (334)
+++.+.+.
T Consensus 170 ~~l~~~~~ 177 (187)
T 1zj6_A 170 EWMMSRLK 177 (187)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
No 17
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.73 E-value=1.3e-17 Score=145.39 Aligned_cols=133 Identities=20% Similarity=0.351 Sum_probs=102.2
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....+..++..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.....
T Consensus 58 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~l~~~~~~~~ 127 (192)
T 2b6h_A 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVQESADELQKMLQEDE 127 (192)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred CCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHhcccc
Confidence 6788888778888889999999999999999999999999999999999997 778888889998887666
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+. ....+.+. ........+.+.+++|||+++.||+++|
T Consensus 128 ~~~~piilv~NK~Dl~~~~---~~~~i~~~----------------------~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 128 LRDAVLLVFANKQDMPNAM---PVSELTDK----------------------LGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred cCCCeEEEEEECCCCCCCC---CHHHHHHH----------------------hCcccccCCceEEEECcCCCcCCHHHHH
Confidence 6789999999999986531 11112211 1111122356789999999999999999
Q ss_pred HHHHHHHH
Q psy3651 317 NAVKNTIL 324 (334)
Q Consensus 317 ~~v~~~I~ 324 (334)
+++.+.+.
T Consensus 183 ~~l~~~i~ 190 (192)
T 2b6h_A 183 DWLSHELS 190 (192)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988764
No 18
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=1.2e-17 Score=146.41 Aligned_cols=142 Identities=22% Similarity=0.351 Sum_probs=99.3
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
||+|.....+.+++..+.+||++||+.++..|..|+++++++|+|+|+++. .++.+...++..+......
T Consensus 55 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~~~~~~~~ 124 (198)
T 1f6b_A 55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDETI 124 (198)
T ss_dssp CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGG
T ss_pred CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCccc
Confidence 455555667777889999999999999999999999999999999999997 7888888999998876555
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+..+ + ....+.+++..+.-.... . -..+.....+.+.+++|||++++||+++|+
T Consensus 125 ~~~piilv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 191 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEA-I--SEERLREMFGLYGQTTGK--G--------SVSLKELNARPLEVFMCSVLKRQGYGEGFR 191 (198)
T ss_dssp TTSCEEEEEECTTSTTC-C--CHHHHHHHHTCTTTCCCS--S--------CCCTTTCCSCCEEEEECBTTTTBSHHHHHH
T ss_pred CCCcEEEEEECCCcccc-C--CHHHHHHHhCcccccccc--c--------ccccccccCceEEEEEEECCCCCCHHHHHH
Confidence 78999999999998652 2 222333322111000000 0 000100112457899999999999999999
Q ss_pred HHHHH
Q psy3651 318 AVKNT 322 (334)
Q Consensus 318 ~v~~~ 322 (334)
++.+.
T Consensus 192 ~l~~~ 196 (198)
T 1f6b_A 192 WMAQY 196 (198)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98754
No 19
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=3.2e-17 Score=142.73 Aligned_cols=138 Identities=23% Similarity=0.374 Sum_probs=104.8
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|.....+.+++.++.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 52 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP----------ERFDEARVELDALFNIAE 121 (190)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCh----------HHHHHHHHHHHHHHcchh
Confidence 3466666677788889999999999999999999999999999999999997 788888889999887655
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..+ + ....+.+.+....-.. +. . + ...+.+.+++|||+++.||.++|
T Consensus 122 ~~~~piilv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~---~~-------~---~--~~~~~~~~~~~Sa~~g~gi~~l~ 183 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNA-V--SEAELRSALGLLNTTG---SQ-------R---I--EGQRPVEVFMCSVVMRNGYLEAF 183 (190)
T ss_dssp GTTCCEEEEEECTTSTTC-C--CHHHHHHHTTCSSCCC----------------C--CSSCCEEEEECBTTTTBSHHHHH
T ss_pred hcCCCEEEEEECCCCcCC-C--CHHHHHHHhCCccccc---cc-------c---c--cccceEEEEEeECCcCCCHHHHH
Confidence 578999999999998652 3 3333433322111000 00 0 0 11356789999999999999999
Q ss_pred HHHHHH
Q psy3651 317 NAVKNT 322 (334)
Q Consensus 317 ~~v~~~ 322 (334)
+++.+.
T Consensus 184 ~~l~~~ 189 (190)
T 1m2o_B 184 QWLSQY 189 (190)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998753
No 20
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=2.6e-17 Score=142.60 Aligned_cols=133 Identities=17% Similarity=0.329 Sum_probs=103.2
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
+|+|.....+..++..+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+......
T Consensus 53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~~~ 122 (188)
T 1zd9_A 53 PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ----------EKIEASKNELHNLLDKPQL 122 (188)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGG
T ss_pred CCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCccc
Confidence 456666666777789999999999999999999999999999999999997 7888888899988876555
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+..+. ....+.+. ..+.......+.+++|||+++.||.++|+
T Consensus 123 ~~~piilv~NK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGAL---DEKELIEK----------------------MNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp TTCCEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred CCCCEEEEEECCCCccCC---CHHHHHHH----------------------hChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 789999999999986531 11111111 11111223567889999999999999999
Q ss_pred HHHHHHHH
Q psy3651 318 AVKNTILH 325 (334)
Q Consensus 318 ~v~~~I~~ 325 (334)
++.+.+.+
T Consensus 178 ~l~~~~~~ 185 (188)
T 1zd9_A 178 WLIQHSKS 185 (188)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99886643
No 21
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=6.4e-18 Score=145.90 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=105.4
Q ss_pred CCCCCCCCCcccccceeeeecceeEEEEEe-----eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhc
Q psy3651 140 PLFQDYIPSNKDILHARKATKGITEFTIVI-----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE 214 (334)
Q Consensus 140 ~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~-----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~e 214 (334)
.|.+.|.|+...+.....||+|++.....+ ..+.+++||++||+.++..|..++++++++|||+|+++.. ..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~--~~~ 114 (198)
T 3t1o_A 37 KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNR--LRA 114 (198)
T ss_dssp TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGG--HHH
T ss_pred hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcch--hhH
Confidence 444677776655545567788877544322 3478999999999999999999999999999999999531 110
Q ss_pred ccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD 294 (334)
Q Consensus 215 d~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~ 294 (334)
+ ...+.+...|+..+ .....+.|++||+||+|+..+ + ....+.++ .
T Consensus 115 ~--~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~-~--~~~~~~~~-----------------~---------- 160 (198)
T 3t1o_A 115 N--AESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDA-L--PVEMVRAV-----------------V---------- 160 (198)
T ss_dssp H--HHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTC-C--CHHHHHHH-----------------H----------
T ss_pred h--HHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccc-c--CHHHHHHH-----------------H----------
Confidence 0 12333334444443 123478899999999998654 2 22112111 1
Q ss_pred CCCCe-EEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 295 EKKPL-FHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 295 ~~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
...++ .+++|||+++.||+++|+++.+.++++..
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 12345 78999999999999999999999987643
No 22
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=140.83 Aligned_cols=133 Identities=21% Similarity=0.370 Sum_probs=104.8
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.+|+|+....+.+++..+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR----------LRMVVAKEELDTLLNHPD 121 (190)
T ss_dssp CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH----------HHHHHHHHHHHHHHHSTT
T ss_pred CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHhChh
Confidence 3566777777788889999999999999999999999999999999999997 678888888988888765
Q ss_pred C--CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 237 F--RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 237 ~--~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
. .+.|++||+||+|+..+ . ....+.+ + ..+.......+.+++|||+++.||.+
T Consensus 122 ~~~~~~piilv~nK~Dl~~~-~--~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 122 IKHRRIPILFFANKMDLRDA-V--TSVKVSQ-----------------L-----LCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp TTTSCCCEEEEEECTTSTTC-C--CHHHHHH-----------------H-----HTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred hccCCCeEEEEEeCcCcccC-C--CHHHHHH-----------------H-----hChhhccCCceEEEEccCCCCcCHHH
Confidence 5 68999999999998653 1 1111111 1 22222223567899999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 315 VFNAVKNTIL 324 (334)
Q Consensus 315 vf~~v~~~I~ 324 (334)
+|+++.+.+.
T Consensus 177 l~~~l~~~i~ 186 (190)
T 2h57_A 177 GVDWLQDQIQ 186 (190)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=5.1e-16 Score=132.74 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=101.3
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..+.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 29 ~~~~~~~~~t~~~~~----------~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-------- 90 (181)
T 3t5g_A 29 GQFVDSYDPTIENTF----------TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI-------- 90 (181)
T ss_dssp SSCCSCCCTTCCEEE----------EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH--------
T ss_pred CCCCCCCCCCccccE----------EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH--------
Confidence 445577777664332 1222333 36789999999999999999999999999999999997
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.....++..+.......+.|++|++||+|+..++. . ..+.+.++...
T Consensus 91 --~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~--------------~~~~~~~~~~~---------- 140 (181)
T 3t5g_A 91 --KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----I--------------SYEEGKALAES---------- 140 (181)
T ss_dssp --HHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCC----S--------------CHHHHHHHHHH----------
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcce----e--------------cHHHHHHHHHH----------
Confidence 67777777888887765556789999999999865432 0 11222222211
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
..+.++++||+++.||.++|+++.+.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 141 WNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred hCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 2457899999999999999999999887643
No 24
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.68 E-value=4.4e-16 Score=130.67 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=100.4
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.+.+.|.||..+... ..+.+ ++..+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 26 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------- 87 (167)
T 1c1y_A 26 GIFVEKYDPTIEDSYR----------KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ-------- 87 (167)
T ss_dssp CCCCCSCCCCSEEEEE----------EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH--------
T ss_pred CCCCCCCCCCccceEE----------EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH--------
Confidence 4455677776643321 11222 346789999999999999999999999999999999997
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+...++..+.......+.|++|++||+|+..++. . ..+.+..+... .
T Consensus 88 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~---------~ 138 (167)
T 1c1y_A 88 --STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--V----------------GKEQGQNLARQ---------W 138 (167)
T ss_dssp --HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC--S----------------CHHHHHHHHHH---------T
T ss_pred --HHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc--C----------------CHHHHHHHHHH---------c
Confidence 56666667777777654456899999999999976432 0 11222212111 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
..+.+++|||+++.||+++|+++.+.+.
T Consensus 139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 139 CNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred cCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 2467899999999999999999988763
No 25
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.67 E-value=7.2e-16 Score=134.81 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=91.4
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.++.+.+||++|++.++..|..++++++++|+|+|+++. .++.....++..+.......+.|++|++||+
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSL----------HSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCH----------HHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 457789999999999999999999999999999999997 6777777888888776555678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
|+..++. . ..+.+..+... ..+.+++|||+++.||+++|+++.+.+.+..
T Consensus 140 Dl~~~~~--v----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 140 DLSPERE--V----------------QAVEGKKLAES----------WGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp TCGGGCC--S----------------CHHHHHHHHHH----------HTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred cCccccc--c----------------CHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9876532 1 11122222221 2357899999999999999999999988654
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.67 E-value=5.9e-16 Score=135.82 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=95.2
Q ss_pred eeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 158 ATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 158 ~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+|+|.+ ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+..
T Consensus 60 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~ 129 (201)
T 2hup_A 60 STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKR----------SSFLSVPHWIEDVRK 129 (201)
T ss_dssp -----CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBH----------HHHHTHHHHHHHHHH
T ss_pred CCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHH
Confidence 444533 33444444 7899999999999999999999999999999999987 566666677777665
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENI 312 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI 312 (334)
.. ..+.|++||+||+|+..++. . ..+.+.++... .++ .+++|||+++.||
T Consensus 130 ~~-~~~~piilv~NK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 130 YA-GSNIVQLLIGNKSDLSELRE----V--------------SLAEAQSLAEH----------YDILCAIETSAKDSSNV 180 (201)
T ss_dssp HS-CTTCEEEEEEECTTCGGGCC----S--------------CHHHHHHHHHH----------TTCSEEEECBTTTTBSH
T ss_pred hc-CCCCCEEEEEECCccccccc----c--------------CHHHHHHHHHH----------cCCCEEEEEeCCCCCCH
Confidence 43 36789999999999976421 0 11222222211 235 7899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy3651 313 KIVFNAVKNTILHRN 327 (334)
Q Consensus 313 ~~vf~~v~~~I~~~~ 327 (334)
.++|+++.+.+.++.
T Consensus 181 ~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 181 EEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988754
No 27
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.67 E-value=1.6e-15 Score=128.89 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=96.5
Q ss_pred EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 164 EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 164 ~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
...+.+.+ +.+.+||++|++.++..|..++.+++++|+|+|+++. .++.+...|+..+... ..+.|
T Consensus 48 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p 115 (181)
T 3tw8_B 48 IRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA----------ESFVNVKRWLHEINQN--CDDVC 115 (181)
T ss_dssp EEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH--CTTSE
T ss_pred EEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCC
Confidence 34445555 7899999999999999999999999999999999996 5666666677776553 35789
Q ss_pred EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 242 FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 242 iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
++||+||+|+..++. . ..+.+..+... ..+.+++|||+++.||.++|+++.+
T Consensus 116 ~ilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 116 RILVGNKNDDPERKV--V----------------ETEDAYKFAGQ----------MGIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp EEEEEECTTCGGGCC--S----------------CHHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEEEEECCCCchhcc--c----------------CHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999876532 1 11122212211 1346889999999999999999999
Q ss_pred HHHHHhhhh
Q psy3651 322 TILHRNLRD 330 (334)
Q Consensus 322 ~I~~~~l~~ 330 (334)
.+.+...+.
T Consensus 168 ~~~~~~~~~ 176 (181)
T 3tw8_B 168 LVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 998765543
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=8.4e-16 Score=131.59 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=90.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.......+.|++|++||+|
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK----------ASFEHVDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 35678899999999999999999999999999999997 56666667777776655557889999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee-cCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV-DTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~-d~~nI~~vf~~v~~~I~~ 325 (334)
+..++. . ..+.+..+.... ++.+++|||+ ++.||.++|+++.+.+.+
T Consensus 135 l~~~~~----v--------------~~~~~~~~~~~~----------~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 135 LMHLRK----V--------------TRDQGKEMATKY----------NIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSTTCC----S--------------CHHHHHHHHHHH----------TCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred chhccC----c--------------CHHHHHHHHHHh----------CCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 876421 0 112222222211 2568999999 999999999999998865
No 29
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=4.8e-16 Score=155.02 Aligned_cols=135 Identities=22% Similarity=0.370 Sum_probs=109.9
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....+.++++.+.+|||+||+.++..|..++++++++|+|+|+++. .++.+...++..+++...
T Consensus 351 ~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~----------~s~~~~~~~~~~~~~~~~ 420 (497)
T 3lvq_E 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRIINDRE 420 (497)
T ss_dssp CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTSGG
T ss_pred CCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcch----------hHHHHHHHHHHHHhhhhh
Confidence 4688888888999999999999999999999999999999999999999997 789999999999998877
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|+|||+||+|+..+. ....+.+. ........+.+.+++|||+++.||.++|
T Consensus 421 ~~~~p~ilv~NK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 421 MRDAIILIFANKQDLPDAM---KPHEIQEK----------------------LGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp GTTCEEEEEEECCSSSSCC---CHHHHHHH----------------------TTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred cCCCcEEEEEECCCCCcCC---CHHHHHHH----------------------hchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 7889999999999986531 11122211 1222222356789999999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 317 NAVKNTILHR 326 (334)
Q Consensus 317 ~~v~~~I~~~ 326 (334)
++|.+.+.+.
T Consensus 476 ~~l~~~~~~~ 485 (497)
T 3lvq_E 476 TWLTSNYKSK 485 (497)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHhc
Confidence 9999876543
No 30
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.67 E-value=7.1e-16 Score=132.05 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=85.8
Q ss_pred eeeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 157 KATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 157 ~~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
.||+|.+ ...+.+++ ..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~ 107 (183)
T 2fu5_C 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIRNWIRNIE 107 (183)
T ss_dssp HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHH
Confidence 3455544 33445544 7899999999999999999999999999999999997 56666667777766
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
.. ...+.|++|++||+|+..++. ...+.+.++... .++.+++|||+++.||
T Consensus 108 ~~-~~~~~piilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 108 EH-ASADVEKMILGNKCDVNDKRQ------------------VSKERGEKLALD----------YGIKFMETSAKANINV 158 (183)
T ss_dssp HH-SCTTCEEEEEEEC--CCSCCC------------------SCHHHHHHHHHH----------HTCEEEECCC---CCH
T ss_pred Hh-cCCCCCEEEEEECccCCccCc------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCH
Confidence 54 235789999999999865421 012222223221 2367899999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy3651 313 KIVFNAVKNTILHRNLR 329 (334)
Q Consensus 313 ~~vf~~v~~~I~~~~l~ 329 (334)
.++|.++.+.+.++..+
T Consensus 159 ~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 159 ENAFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876543
No 31
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.67 E-value=5.4e-16 Score=129.82 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=89.4
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.....++..+.......+.|++|++||+|
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 120 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 36789999999999999999999999999999999997 66777777778877765556899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++- . ..+.+..+... .++.++++||+++.||.++|+++.+.+.+
T Consensus 121 l~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 121 LEDKRQ----V--------------SVEEAKNRADQ----------WNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp GGGGCC----S--------------CHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccccCc----c--------------CHHHHHHHHHH----------cCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 865421 1 11222222221 23578999999999999999999988764
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.66 E-value=6.7e-16 Score=131.92 Aligned_cols=120 Identities=20% Similarity=0.207 Sum_probs=94.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+.+||++|++.++..|..++.+++++|+|+|+++. .++.....++..+.......+.|++|++||+|
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 36789999999999999999999999999999999997 66777777888877765556899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
+..++. . ..+.+.++.. ...+.+++|||+++.||.++|+++.+.+.++..
T Consensus 135 l~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 135 LEDKRQ----V--------------SVEEAKNRAE----------QWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp GGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccCc----c--------------CHHHHHHHHH----------HcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 866421 1 1122222221 124678999999999999999999999987654
No 33
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=1e-15 Score=135.83 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=100.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..+.... ...+....+.+.+||++||+.++..|..++++++++|+|+|+++.
T Consensus 50 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---------- 111 (214)
T 3q3j_B 50 DCYPETYVPTVFENYTA--------CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP---------- 111 (214)
T ss_dssp SCCCSSCCCCSEEEEEE--------EEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT----------
T ss_pred CCCCCCcCCeeeeeEEE--------EEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH----------
Confidence 45556777776543211 011122347899999999999999999999999999999999997
Q ss_pred ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++.+++. |+..+... ..++|++|++||+|+..+.- ....+.. ........+.+..+....
T Consensus 112 ~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------- 173 (214)
T 3q3j_B 112 ETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLS--TLMELSH----QKQAPISYEQGCAIAKQL---------- 173 (214)
T ss_dssp HHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHH--HHHHHHH----TTCCCCCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchh--hhhhhcc----cccCccCHHHHHHHHHHc----------
Confidence 67777544 44444433 36889999999999976421 1101110 001112233333333221
Q ss_pred Ce-EEEEEeeecCch-HHHHHHHHHHHHHHH
Q psy3651 298 PL-FHHFTTAVDTEN-IKIVFNAVKNTILHR 326 (334)
Q Consensus 298 ~i-~~~~tsA~d~~n-I~~vf~~v~~~I~~~ 326 (334)
++ .+++|||+++.| |.++|+++.+.+++.
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 34 789999999998 999999999988754
No 34
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=132.51 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=94.0
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+.+||++|++.++..|..++.+++++|+|+|+++. .++.....|+..+.......+.|++|++||+|+
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 5789999999999999999999999999999999997 667777778888877654568999999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
..++- . ..+.+..+... ..+.+++|||+++.||.++|+++.+.+.+..
T Consensus 132 ~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 132 EDKRQ----V--------------SVEEAKNRAEQ----------WNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp GGGCC----S--------------CHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccccc----c--------------cHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 66421 1 12222223221 2357899999999999999999999998754
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.66 E-value=1.3e-15 Score=130.84 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=94.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+.......+.|++|++||+|
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNE----------QSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 35899999999999999999999999999999999997 56666677777777765557899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
+..++. . ..+.+.++... .++.+++|||+++.||+++|+++.+.+.++.-
T Consensus 139 l~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 139 LEDQRA--V----------------KEEEARELAEK----------YGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp CGGGCC--S----------------CHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccc--c----------------CHHHHHHHHHH----------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 966421 0 11222222221 12568999999999999999999999987643
No 36
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.66 E-value=2.2e-15 Score=130.55 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=94.0
Q ss_pred EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.++ .+.+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+.... ..+.|++
T Consensus 62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~l~~i~~~~-~~~~pii 130 (191)
T 2a5j_A 62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLTSWLEDARQHS-SSNMVIM 130 (191)
T ss_dssp EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEE
T ss_pred EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCCEE
Confidence 34443 36899999999999999999999999999999999996 55666666776665542 3578999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|++||+|+..++. . ..+.+..+... ..+.+++|||+++.||+++|+++.+.+
T Consensus 131 lv~nK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 131 LIGNKSDLESRRD----V--------------KREEGEAFARE----------HGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTCGGGCC----S--------------CHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcccCCccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999965421 0 11222222221 235789999999999999999999999
Q ss_pred HHHhh
Q psy3651 324 LHRNL 328 (334)
Q Consensus 324 ~~~~l 328 (334)
.++..
T Consensus 183 ~~~~~ 187 (191)
T 2a5j_A 183 YRKIQ 187 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.66 E-value=1.1e-15 Score=129.97 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=93.5
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..++......+.|++|++||+|+
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR----------QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 6788999999999999999999999999999999997 677777788888876655578899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
..++- + ..+.+..+.. ...+.+++|||+++.||.++|+++.+.+.+..
T Consensus 127 ~~~~~------v------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 127 ESQRQ------V------------PRSEASAFGA----------SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp GGGCC------S------------CHHHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ccccc------c------------CHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 66421 0 0111211111 13467899999999999999999999987654
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1e-15 Score=130.29 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=85.4
Q ss_pred eecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 158 ATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 158 ~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+|+|.+.. .+.+. .+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+..
T Consensus 42 ~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~ 111 (180)
T 2g6b_A 42 STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK----------ASFDNIQAWLTEIHE 111 (180)
T ss_dssp CCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCH----------HHHHTHHHHHHHHHH
T ss_pred CceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHH
Confidence 45555432 23333 36899999999999999999999999999999999996 445555556666554
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.. ..+.|++|++||+|+..++. . ..+.+..+... ..+.+++|||+++.||+
T Consensus 112 ~~-~~~~piilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 112 YA-QHDVALMLLGNKVDSAHERV--V----------------KREDGEKLAKE----------YGLPFMETSAKTGLNVD 162 (180)
T ss_dssp HS-CTTCEEEEEEECCSTTSCCC--S----------------CHHHHHHHHHH----------HTCCEEECCTTTCTTHH
T ss_pred hC-CCCCcEEEEEECcccCcccc--c----------------CHHHHHHHHHH----------cCCeEEEEeCCCCCCHH
Confidence 32 26789999999999875421 0 11122222211 13568999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy3651 314 IVFNAVKNTILHRNL 328 (334)
Q Consensus 314 ~vf~~v~~~I~~~~l 328 (334)
++|+++.+.+.+++.
T Consensus 163 ~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 163 LAFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876544
No 39
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=6.7e-17 Score=153.20 Aligned_cols=137 Identities=13% Similarity=0.165 Sum_probs=92.8
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccc---cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRR---KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~---kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
..||+|+....+. ..+++++||||||+++++ .|.+||++++++|||+|+++ . +.+++.+|..++
T Consensus 31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd-----------~-~~~~~~~l~~~l 97 (331)
T 3r7w_B 31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD-----------E-YINAITNLAMII 97 (331)
T ss_dssp CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS-----------C-TTHHHHHHHHHH
T ss_pred ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc-----------h-HHHHHHHHHHHH
Confidence 4678888876653 458999999999999975 46899999999999999998 2 445555555544
Q ss_pred hh--cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC--CCCeEEEEEeeec
Q psy3651 233 NN--VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE--KKPLFHHFTTAVD 308 (334)
Q Consensus 233 ~~--~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~--~~~i~~~~tsA~d 308 (334)
.. ...+++|++|++||+||..+.- +....++. ..+.+ .++.... ..++.+++|||+|
T Consensus 98 ~~~~~~~~~ipillvgNK~DL~~~~~--R~~~~R~V---------~~~~~--------~~la~~~~~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 98 EYAYKVNPSINIEVLIHKVDGLSEDF--KVDAQRDI---------MQRTG--------EELLELGLDGVQVSFYLTSIFD 158 (331)
T ss_dssp HHHHHHCTTCEEEEECCCCCSSCSHH--HHHHHHHH---------HHHHH--------HTTSSSSCSCCCEEEECCCSSS
T ss_pred HHHhhcCCCCcEEEEEECcccCchhh--hhhHHHHh---------hHHHH--------HHHHhhcccccCceEEEeccCC
Confidence 31 1246799999999999965311 00000000 00000 1222211 2468999999998
Q ss_pred CchHHHHHHHHHHHHHH
Q psy3651 309 TENIKIVFNAVKNTILH 325 (334)
Q Consensus 309 ~~nI~~vf~~v~~~I~~ 325 (334)
.||.++|..+...|+.
T Consensus 159 -~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 159 -HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -SHHHHHHHHHHTTSST
T ss_pred -CcHHHHHHHHHHHHHh
Confidence 5999999999886653
No 40
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.66 E-value=3.3e-15 Score=129.07 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=90.0
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+...+.+||++|++.++..|..++++++++|||+|+++. .++.....|+..+... ...+.|++|++||+
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~ 137 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ----------ESFAAVQDWATQIKTY-SWDNAQVILVGNKC 137 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECc
Confidence 357899999999999999999999999999999999986 4555555666665543 24678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. . ..+.+.++... .++.+++|||+++.||+++|+++.+.+.++
T Consensus 138 Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 138 DLEDERV--V----------------PAEDGRRLADD----------LGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TCGGGCC--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccccC--C----------------CHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9966431 0 11222222221 135789999999999999999999988764
No 41
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=2.6e-15 Score=130.01 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=100.0
Q ss_pred CCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651 140 PLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217 (334)
Q Consensus 140 ~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~ 217 (334)
.|.+.|.||..+.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 42 ~~~~~~~~t~~~~~----------~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--------- 102 (194)
T 2atx_A 42 AFPEEYVPTVFDHY----------AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP--------- 102 (194)
T ss_dssp SCCCSCCCSSCCCE----------EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH---------
T ss_pred CCCCCCCCccccee----------EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH---------
Confidence 45567777765432 11233333 6789999999999999999999999999999999997
Q ss_pred cccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 218 TNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 218 ~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..+.- ....+.. .....-..+.+.++....
T Consensus 103 -~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~--------- 164 (194)
T 2atx_A 103 -ASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPK--TLARLND----MKEKPICVEQGQKLAKEI--------- 164 (194)
T ss_dssp -HHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHH--HHHHHTT----TTCCCCCHHHHHHHHHHH---------
T ss_pred -HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccccc--chhhccc----ccCcccCHHHHHHHHHHc---------
Confidence 5666665 455555443 34789999999999976421 1111111 111112334443333321
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
....+++|||+++.||+++|+++.+.++
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 1125889999999999999999998876
No 42
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=147.69 Aligned_cols=134 Identities=22% Similarity=0.365 Sum_probs=105.0
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.||+|+....+..+++.++||||+||+.++..|..++++++++|+|+|+++. .++.+...++..++....
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~----------~s~~~~~~~~~~~~~~~~ 263 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVNEAREELMRMLAEDE 263 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCS----------SSHHHHHHHHHHHHTCGG
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCch----------HHHHHHHHHHHHHHhhhc
Confidence 5799999888888999999999999999999999999999999999999997 788888889999888766
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..++|++||+||+|+..+. ....+.. . ..........+.+++|||+++.||.++|
T Consensus 264 ~~~~piilV~NK~Dl~~~~---~~~~i~~---------------------~-~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPNAM---NAAEITD---------------------K-LGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp GTTCEEEEEEECTTSTTCC---CHHHHHH---------------------H-HTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred cCCCeEEEEEECccCCccc---CHHHHHH---------------------H-hchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 6789999999999986542 1111111 1 1222222356889999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
++|.+.+.+
T Consensus 319 ~~l~~~l~~ 327 (329)
T 3o47_A 319 DWLSNQLRN 327 (329)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999988754
No 43
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.1e-15 Score=133.07 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=91.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++. +..|..++++++++|+|+|+++. .++.+...++..+.......+.|++|++||+|
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 143 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR----------GSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence 47799999999998 88999999999999999999997 66666667777776654456889999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc-hHHHHHHHHHHHHHHHh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE-NIKIVFNAVKNTILHRN 327 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~-nI~~vf~~v~~~I~~~~ 327 (334)
+..++. . ..+.+..+... ..+.+++|||+++. ||.++|+++.+.+.++.
T Consensus 144 l~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 144 LDHSRQ----V--------------STEEGEKLATE----------LACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp GGGGCC----S--------------CHHHHHHHHHH----------HTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred cccccc----c--------------CHHHHHHHHHH----------hCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 876421 0 11222222221 13678999999999 99999999999988754
No 44
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=132.07 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=97.5
Q ss_pred CCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 141 LFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 141 f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
|.+.|.||..|... ..+.++ .+.+.+||++|++.++..|..++.+++++|||+|+++.
T Consensus 45 ~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---------- 104 (201)
T 2q3h_A 45 YPTEYIPTAFDNFS----------AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP---------- 104 (201)
T ss_dssp ------CCSSEEEE----------EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH----------
T ss_pred CCCCCCCcccceeE----------EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH----------
Confidence 44667777644321 123333 36788999999999999999999999999999999997
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..+.- ....+.+. .......+.+..+.... .
T Consensus 105 ~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~ 167 (201)
T 2q3h_A 105 SSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVK--VLIELDKC----KEKPVPEEAAKLLAEEI---------K 167 (201)
T ss_dssp HHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHH--HHHHHHTT----TCCCCCHHHHHHHHHHH---------T
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchh--hhhhhccc----ccccCCHHHHHHHHHhc---------C
Confidence 5666665 455555443 24789999999999976421 11111110 00111223333222211 1
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
...+++|||+++.||.++|+++.+.+++..-
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 2368999999999999999999999887643
No 45
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=132.26 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=95.6
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+.... ...+....+.+++||++||+.++. +..|+++++++|+|+|+++.
T Consensus 44 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~---------- 104 (187)
T 3c5c_A 44 KRFISEYDPNLEDTYSS--------EETVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSR---------- 104 (187)
T ss_dssp SSCCSCCCTTCCEEEEE--------EEEETTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCH----------
T ss_pred CCCCcccCCCccceeeE--------EEEECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCH----------
Confidence 34557788876543211 111222457889999999998887 57899999999999999987
Q ss_pred ccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 219 NRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 219 nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+...|+..+.... ...+.|++|++||+|+..++. -..+.+.++...
T Consensus 105 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------------------v~~~~~~~~~~~---------- 156 (187)
T 3c5c_A 105 QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ------------------VTKAEGVALAGR---------- 156 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS------------------SCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc------------------cCHHHHHHHHHH----------
Confidence 66777777777766531 135789999999999865421 012223323322
Q ss_pred CCeEEEEEee-ecCchHHHHHHHHHHHHHH
Q psy3651 297 KPLFHHFTTA-VDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 297 ~~i~~~~tsA-~d~~nI~~vf~~v~~~I~~ 325 (334)
.++.+++||| +++.||+++|+++.+.+.+
T Consensus 157 ~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 157 FGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred cCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 1357899999 8999999999999987753
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4.2e-16 Score=134.45 Aligned_cols=118 Identities=11% Similarity=0.172 Sum_probs=91.4
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.......+.|++|++||+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~ 131 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR----------DTFVKLDNWLNELETYCTRNDIVNMLVGNKI 131 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCCCcEEEEEECC
Confidence 357899999999999999999999999999999999997 5566666677777654434678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+....+ . .+.+..+... ..+.+++|||+++.||+++|+++.+.+.+.
T Consensus 132 Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 132 DKENREV--D-----------------RNEGLKFARK----------HSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TSSSCCS--C-----------------HHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred cCccccc--C-----------------HHHHHHHHHH----------cCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 9854322 1 1122222221 246789999999999999999999988753
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.65 E-value=5.3e-16 Score=131.89 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=92.9
Q ss_pred eeccee--EEEEEeeC---cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 158 ATKGIT--EFTIVISN---IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 158 ~T~Gi~--~~~~~~~~---~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
||+|++ ...+.+.+ ..+++||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+.
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~ 106 (178)
T 2hxs_A 37 QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNY----------QSFENLEDWYTVVK 106 (178)
T ss_dssp HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHH
T ss_pred CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHH
Confidence 455533 34555544 7899999999999999999999999999999999997 44444444444443
Q ss_pred hhc-CCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 233 NNV-IFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 233 ~~~-~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
... ...+.| ++|++||+|+..++- . ..+.+..+... .++.+++|||+++.
T Consensus 107 ~~~~~~~~~~~iilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 107 KVSEESETQPLVALVGNKIDLEHMRT--I----------------KPEKHLRFCQE----------NGFSSHFVSAKTGD 158 (178)
T ss_dssp HHHHHHTCCCEEEEEEECGGGGGGCS--S----------------CHHHHHHHHHH----------HTCEEEEECTTTCT
T ss_pred HHhcccCCCCeEEEEEEccccccccc--c----------------CHHHHHHHHHH----------cCCcEEEEeCCCCC
Confidence 311 112344 899999999866421 0 11222222221 23678999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy3651 311 NIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 311 nI~~vf~~v~~~I~~~~l 328 (334)
||.++|+++.+.+.+..+
T Consensus 159 gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp THHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999998876544
No 48
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.65 E-value=2.6e-15 Score=127.65 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=80.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEe
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLN 247 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lN 247 (334)
...+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+.... ...+.|++|++|
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 126 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA----------SSFENIKSWRDEFLVHANVNSPETFPFVILGN 126 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCCh----------HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence 36789999999999999999999999999999999997 45555555666555432 236789999999
Q ss_pred CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
|+|+....- .. ..+.+.++... ...+.+++|||+++.||+++|+++.+.+++++
T Consensus 127 K~Dl~~~~~---~v--------------~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 127 KIDAEESKK---IV--------------SEKSAQELAKS---------LGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp CTTSCGGGC---CS--------------CHHHHHHHHHH---------TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCccccccc---cC--------------CHHHHHHHHHh---------cCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 999854321 10 11222222111 13456899999999999999999999998765
Q ss_pred h
Q psy3651 328 L 328 (334)
Q Consensus 328 l 328 (334)
.
T Consensus 181 ~ 181 (182)
T 1ky3_A 181 Q 181 (182)
T ss_dssp C
T ss_pred c
Confidence 4
No 49
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.64 E-value=5.5e-16 Score=132.85 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=90.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++.+++++|+|+|+++. .++.+...++..+.......+.|++|++||+|
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 35688999999999999999999999999999999997 67777777888877765567899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
+..... .. +.+..+... ..+.++++||+++.||.++|+++.+.+.+..
T Consensus 121 l~~~~~--~~-----------------~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 121 LPSRTV--DT-----------------KQAQDLARS----------YGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp SSSCSS--CH-----------------HHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred Cccccc--CH-----------------HHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 865432 11 112112111 1356899999999999999999999987653
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.64 E-value=1.6e-15 Score=126.73 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=91.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++++|+|+++. .++.+...++..+.......+.|++|++||+|
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ----------QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 35689999999999999999999999999999999997 67777778888887765556899999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++- . ..+.+..+... .++.+++|||+++.||.++|+++.+.+.+
T Consensus 120 l~~~~~---~---------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 120 LESERE---V---------------SSSEGRALAEE----------WGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp GGGGCC---S---------------CHHHHHHHHHH----------HTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccc---C---------------CHHHHHHHHHH----------hCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 865421 0 11122222221 13468999999999999999999987753
No 51
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=6.3e-16 Score=134.13 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=88.5
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+++||++|++.++..|..++++++++|+|+|+++. .++.+....|...+.. ...+.|++||+||+|
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D 138 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR----------TSFDNISTKWEPEIKH-YIDTAKTVLVGLKVD 138 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTTSEEEEEEECGG
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCCCCEEEEEEChh
Confidence 46789999999999999999999999999999999997 6666654444444443 246789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeE-EEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLF-HHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~-~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
+..+.- .. ...+.+.++.... ++. +++|||+++.||.++|+++.+.++++.
T Consensus 139 l~~~~~--~~--------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 139 LRKDGS--DD--------------VTKQEGDDLCQKL----------GCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp GCCTTT--TC--------------CCHHHHHHHHHHH----------TCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred hccCCC--Cc--------------ccHHHHHHHHHhc----------CCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 875321 11 1122222222221 233 889999999999999999999887654
No 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.64 E-value=1.8e-15 Score=128.33 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=87.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.... ..+.|++|++||+
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 130 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLT-NPNTVIILIGNKA 130 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 347899999999999999999999999999999999997 45555555665555432 3578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+..++- . ..+.+.++... ..+.++++||+++.||.++|+++.+.+++
T Consensus 131 Dl~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 131 DLEAQRD----V--------------TYEEAKQFAEE----------NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCGGGCC----S--------------CHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ccccccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9965421 0 11222222221 24678999999999999999999988754
No 53
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.64 E-value=4.2e-15 Score=128.43 Aligned_cols=124 Identities=20% Similarity=0.225 Sum_probs=92.9
Q ss_pred EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
..+.+.+ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+... ...+.|+
T Consensus 56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~ 124 (196)
T 3tkl_A 56 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDRY-ASENVNK 124 (196)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCCE
Confidence 3444444 7899999999999999999999999999999999997 5566666666666543 2357899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+|++||+|+..++. . ..+.+..+.. ...+.+++|||+++.||.++|+++.+.
T Consensus 125 ilv~nK~Dl~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 125 LLVGNKCDLTTKKV--V----------------DYTTAKEFAD----------SLGIPFLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp EEEEECTTCTTTCC--S----------------CHHHHHHHHH----------HTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred EEEEECcccccccc--c----------------CHHHHHHHHH----------HcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999876532 1 1111111111 123568999999999999999999999
Q ss_pred HHHHh
Q psy3651 323 ILHRN 327 (334)
Q Consensus 323 I~~~~ 327 (334)
+.++.
T Consensus 177 i~~~~ 181 (196)
T 3tkl_A 177 IKKRM 181 (196)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88754
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.64 E-value=4.1e-15 Score=128.72 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=92.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+... ...+.|++|++||+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~s~~~~~~~l~~i~~~-~~~~~piilv~nK~ 140 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH----------QTYAVVERWLKELYDH-AEATIVVMLVGNKS 140 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHTT-SCTTCEEEEEEECG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCCCeEEEEEECC
Confidence 457899999999999999999999999999999999996 5566666677776653 23578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
|+..++- . ..+.+..+.. ...+.+++|||+++.||+++|+++.+.++++.-
T Consensus 141 Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 141 DLSQARE----V--------------PTEEARMFAE----------NNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp GGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred Ccccccc----c--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9965421 0 1122222221 134678999999999999999999999887643
No 55
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.64 E-value=1.3e-15 Score=133.96 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=98.3
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 32 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------- 93 (212)
T 2j0v_A 32 NKFPTDYIPTVFDNFS----------ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK-------- 93 (212)
T ss_dssp SCCCSSCCCSSCCCEE----------EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCH--------
T ss_pred CCCCccCCCccceeEE----------EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCH--------
Confidence 4555677777654321 122233 36899999999999999999999999999999999997
Q ss_pred ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..++. .. .. ....-..+.+.++....
T Consensus 94 --~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~~---~~-----~~~~v~~~~~~~~~~~~-------- 151 (212)
T 2j0v_A 94 --ASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKG--YL---AD-----HTNVITSTQGEELRKQI-------- 151 (212)
T ss_dssp --HHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH--HH---HT-----CSSCCCHHHHHHHHHHH--------
T ss_pred --HHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCcc--cc---cc-----ccCCCCHHHHHHHHHHc--------
Confidence 5666665 455554433 24789999999999865431 10 00 00011233333232221
Q ss_pred CCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 296 KKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
....+++|||+++.||.++|+++.+.+.+.
T Consensus 152 -~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 152 -GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp -TCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred -CCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 123689999999999999999999988754
No 56
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.64 E-value=4e-15 Score=127.51 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=92.2
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+++ +.+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+.... ..+.|++
T Consensus 51 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pii 119 (186)
T 2bme_A 51 IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNALTNWLTDARMLA-SQNIVII 119 (186)
T ss_dssp EEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEE
T ss_pred EEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCCCcEE
Confidence 344444 7899999999999999999999999999999999996 55555566666655432 2578999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|++||+|+..++. . ..+.+..+.. ...+.+++|||+++.||.++|+++.+.+
T Consensus 120 lv~nK~Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 120 LCGNKKDLDADRE----V--------------TFLEASRFAQ----------ENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EEEECGGGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcccccccc----c--------------CHHHHHHHHH----------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999865421 1 1112222221 1346789999999999999999999988
Q ss_pred HHHh
Q psy3651 324 LHRN 327 (334)
Q Consensus 324 ~~~~ 327 (334)
.++.
T Consensus 172 ~~~~ 175 (186)
T 2bme_A 172 LNKI 175 (186)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 57
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.63 E-value=5e-15 Score=129.64 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=90.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.... ..+.|++|++||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 124 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ----------ESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCD 124 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCCCCEEEEEECCC
Confidence 36899999999999999999999999999999999997 56666666666665442 35789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+..++. . ..+.+..+.. ...+.+++|||+++.||.++|+++.+.+.+.
T Consensus 125 l~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 125 LKDKRV--V----------------EYDVAKEFAD----------ANKMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CTTTCC--S----------------CHHHHHHHHH----------HTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred Cccccc--c----------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 976421 0 1122222221 1235689999999999999999999988764
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.63 E-value=3.5e-15 Score=125.32 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=77.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.+||++|++.++..|..|+.+++++|+|+|+++. .++.+...++..+.......+.|++|++||+
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCH----------HHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 446789999999999999999999999999999999997 6778888888888876555789999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. . ..+.+..+.. ...+.+++|||+++.||+++|+++.+.+.++
T Consensus 117 Dl~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 117 DLVRSRE--V----------------SVDEGRACAV----------VFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TCCSSCC--S----------------CHHHHHHHHH----------HTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccccccc--c----------------CHHHHHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 9875421 0 1111111111 1246789999999999999999999988764
No 59
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.63 E-value=3.1e-15 Score=125.62 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=88.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.... ..+.|++|++||+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~ 121 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE----------ESFARAKNWVKELQRQA-SPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 357899999999999999999999999999999999997 56677777777776543 3678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+..++. . ..+.+.++.. ...+.+++|||+++.||+++|+++.+.+
T Consensus 122 Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 122 DLANKRA----V--------------DFQEAQSYAD----------DNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp GGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cCccccc----c--------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9865421 1 1122222221 1346789999999999999999988754
No 60
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.9e-15 Score=130.90 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=90.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.++.+.+||++|++.++..|..++++++++|+|+|+++. .++.....|+..+... ...+.|++||+||+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~ 138 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWATQIKTY-SWDNAQVILVGNKC 138 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECC
Confidence 457899999999999999999999999999999999986 5555555555555443 34678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. . ..+.+..+... .++.+++|||+++.||.++|+++.+.+.++
T Consensus 139 Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 139 DMEEERV--V----------------PTEKGQLLAEQ----------LGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TCGGGCC--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCccccc--c----------------CHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9976532 1 11122212111 235789999999999999999999998765
No 61
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.62 E-value=4.2e-15 Score=129.68 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=90.4
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|||+|+++. .++.....|+..+... ...+.|++|++||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D 124 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCSSCEEEEEEECTT
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 57899999999999999999999999999999999996 5666666666666553 246789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+..++. . ..+.+..+... .++.+++|||+++.||.++|+++.+.+.++
T Consensus 125 l~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 125 MEDERV--V----------------SSERGRQLADH----------LGFEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp CTTSCC--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred cCcccc--c----------------CHHHHHHHHHH----------CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 965421 0 11222222211 135789999999999999999999988765
No 62
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.5e-15 Score=132.79 Aligned_cols=130 Identities=23% Similarity=0.281 Sum_probs=92.0
Q ss_pred eeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 158 ATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 158 ~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+|+|.. ...+.+.+ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+..
T Consensus 44 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~----------~s~~~~~~~l~~i~~ 113 (223)
T 3cpj_B 44 STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS----------SSYENCNHWLSELRE 113 (223)
T ss_dssp ---CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCH----------HHHHHHHHHHHHHHH
T ss_pred CcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHH
Confidence 344433 33444544 7899999999999999999999999999999999997 667777777777655
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
.. ..+.|++||+||+|+..++. . ..+.+..+... ..+.+++|||+++.||+
T Consensus 114 ~~-~~~~piilv~nK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 114 NA-DDNVAVGLIGNKSDLAHLRA----V--------------PTEESKTFAQE----------NQLLFTETSALNSENVD 164 (223)
T ss_dssp HC-C--CEEEEEECCGGGGGGCC----S--------------CHHHHHHHHHH----------TTCEEEECCCC-CCCHH
T ss_pred hC-CCCCeEEEEEECcccccccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHH
Confidence 42 45789999999999865421 0 11222222211 24678999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILHR 326 (334)
Q Consensus 314 ~vf~~v~~~I~~~ 326 (334)
++|+++.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.62 E-value=4.6e-15 Score=127.69 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=98.8
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|.+.|.||..+... ..+.+ ..+.+.+||++|++.++..|..++.+++++|+|+|+++.
T Consensus 30 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-------- 91 (184)
T 1m7b_A 30 DCFPENYVPTVFENYT----------ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP-------- 91 (184)
T ss_dssp SCCCSSCCCCSEEEEE----------EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH--------
T ss_pred CCCCCCCCCccceeEE----------EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH--------
Confidence 3455667777643211 12222 346789999999999999999999999999999999997
Q ss_pred ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..+.. ....+... ....-+.+.+.++....
T Consensus 92 --~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~-------- 153 (184)
T 1m7b_A 92 --ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVS--TLVELSNH----RQTPVSYDQGANMAKQI-------- 153 (184)
T ss_dssp --HHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHH--HHHHHHTT----TCCCCCHHHHHHHHHHH--------
T ss_pred --HHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchh--hHhhhhhc----ccCCCCHHHHHHHHHHc--------
Confidence 5666663 344444332 35789999999999975321 11111100 00112334444333321
Q ss_pred CCCeEEEEEeee-cCchHHHHHHHHHHHHHH
Q psy3651 296 KKPLFHHFTTAV-DTENIKIVFNAVKNTILH 325 (334)
Q Consensus 296 ~~~i~~~~tsA~-d~~nI~~vf~~v~~~I~~ 325 (334)
..+.+++|||+ ++.||+++|+++.+.+++
T Consensus 154 -~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 154 -GAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp -TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred -CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 12568999998 689999999999988764
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.62 E-value=1.9e-15 Score=128.34 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=92.4
Q ss_pred eeeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 157 KATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 157 ~~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
.+|+|.+ ...+.+.+ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~ 106 (177)
T 1wms_A 37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS----------QSFQNLSNWKKEFI 106 (177)
T ss_dssp --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHH
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHH
Confidence 3455544 23444444 6899999999999999999999999999999999997 44444444555444
Q ss_pred hh---cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651 233 NN---VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT 309 (334)
Q Consensus 233 ~~---~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~ 309 (334)
.. ....+.|++|++||+|+....+ . .+.+.++... ...+.+++|||+++
T Consensus 107 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~--~-----------------~~~~~~~~~~---------~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 107 YYADVKEPESFPFVILGNKIDISERQV--S-----------------TEEAQAWCRD---------NGDYPYFETSAKDA 158 (177)
T ss_dssp HHHTCSCTTTSCEEEEEECTTCSSCSS--C-----------------HHHHHHHHHH---------TTCCCEEECCTTTC
T ss_pred HHccccccCCCcEEEEEECCccccccc--C-----------------HHHHHHHHHh---------cCCceEEEEeCCCC
Confidence 32 2236789999999999863322 1 1222222221 13456899999999
Q ss_pred chHHHHHHHHHHHHHH
Q psy3651 310 ENIKIVFNAVKNTILH 325 (334)
Q Consensus 310 ~nI~~vf~~v~~~I~~ 325 (334)
.||.++|+++.+.+++
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998875
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.62 E-value=8.7e-15 Score=124.65 Aligned_cols=119 Identities=12% Similarity=0.066 Sum_probs=82.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh--cCCCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN--VIFRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~--~~~~~~piiL~lNK 248 (334)
.+.+++||++||+. ..|+++++++|+|+|+++. .++.....|++.+... ....++|++|++||
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDE----------NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 36789999999986 4688999999999999997 5555555544333322 22357899999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
+|+..+.- .. ...+.+.++.... ..+.+++|||+++.||+++|+++.+.+++...
T Consensus 118 ~Dl~~~~~--~~--------------v~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 118 DRISASSP--RV--------------VGDARARALXADM---------KRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp TTCBTTBC--CC--------------SCHHHHHHHHHHH---------SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred cccccccc--Cc--------------CCHHHHHHHHHhh---------cCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 99853210 11 1122222222211 24678999999999999999999999887644
Q ss_pred h
Q psy3651 329 R 329 (334)
Q Consensus 329 ~ 329 (334)
+
T Consensus 173 ~ 173 (178)
T 2iwr_A 173 Q 173 (178)
T ss_dssp H
T ss_pred h
Confidence 3
No 66
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.62 E-value=1.8e-15 Score=133.48 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=91.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.......+.|++||+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ----------QSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCH----------HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 56899999999999999999999999999999999996 56666666776665544346789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+..++. . ..+.+.++... ..+.+++|||+++.||.++|+++.+.+.++
T Consensus 153 l~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 153 LPDQRE----V--------------NERQARELADK----------YGIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp CGGGCC----S--------------CHHHHHHHHHH----------TTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cccccc----c--------------CHHHHHHHHHH----------CCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 966421 0 11122222211 235689999999999999999999988764
No 67
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=7.1e-15 Score=129.43 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=90.7
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.....|+..+... ...+.|++
T Consensus 67 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~-~~~~~pii 135 (201)
T 2ew1_A 67 TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE----------ESFRCLPEWLREIEQY-ASNKVITV 135 (201)
T ss_dssp EEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCCCCEE
Confidence 344443 6899999999999999999999999999999999997 4555555566555443 23578999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
||+||+|+..++- . ..+.+..+... ..+.+++|||+++.||.++|+++.+.+
T Consensus 136 lv~NK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 136 LVGNKIDLAERRE----V--------------SQQRAEEFSEA----------QDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp EEEECGGGGGGCS----S--------------CHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCCccccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999865421 0 11222222221 235689999999999999999999988
Q ss_pred HHHh
Q psy3651 324 LHRN 327 (334)
Q Consensus 324 ~~~~ 327 (334)
.++.
T Consensus 188 ~~~~ 191 (201)
T 2ew1_A 188 ISEA 191 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.62 E-value=1.8e-15 Score=130.48 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=80.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|+..++..|..++++++++|+|+|+++. .++.+...++..+.......+.|++|++||+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS----------KSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEEECCC-----------CTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence 36689999999999999999999999999999999997 55666666666665543345789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhh
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 330 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~ 330 (334)
+....+ . .+.+.++... .++.+++|||+++.||.++|+++.+.+.+...++
T Consensus 138 l~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 188 (190)
T 3con_A 138 LPTRTV--D-----------------TKQAHELAKS----------YGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188 (190)
T ss_dssp CSCCCS--C-----------------HHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred CCcccC--C-----------------HHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 865322 1 1222222221 1346899999999999999999999998766554
No 69
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=131.09 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=93.1
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+.+ ..+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+.... ..+.|++
T Consensus 66 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pii 134 (200)
T 2o52_A 66 VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNSLAAWLTDARTLA-SPNIVVI 134 (200)
T ss_dssp EEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHT-CTTCEEE
T ss_pred EEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCCCcEE
Confidence 344444 7899999999999999999999999999999999997 55666666666665543 2678999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
||+||+|+..++. . ..+.+..+.. ...+.+++|||+++.||.++|+++.+.+
T Consensus 135 lv~nK~Dl~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 135 LCGNKKDLDPERE----V--------------TFLEASRFAQ----------ENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECGGGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCcccccc----c--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999865421 1 1112222221 1346789999999999999999999998
Q ss_pred HHHh
Q psy3651 324 LHRN 327 (334)
Q Consensus 324 ~~~~ 327 (334)
.++.
T Consensus 187 ~~~~ 190 (200)
T 2o52_A 187 LNKI 190 (200)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 70
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.62 E-value=4.5e-15 Score=124.53 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=88.5
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.... .+.|+++++||+|
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~~piilv~nK~D 120 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR----------ESFEAISSWREKVVAEV--GDIPTALVQNKID 120 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHH--CSCCEEEEEECGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence 46899999999999999999999999999999999996 45566666666665543 6789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++. . ..+.+.++... .++.++++||+++.||+++|+++.+.+++
T Consensus 121 l~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 121 LLDDSC--I----------------KNEEAEGLAKR----------LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp GGGGCS--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred cCcccc--c----------------CHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 876421 0 11222222221 13578999999999999999999988764
No 71
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=141.11 Aligned_cols=112 Identities=8% Similarity=0.075 Sum_probs=79.1
Q ss_pred ecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH---HHHHhhcC-CCCCcEEEEEeCC-Ccc
Q psy3651 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF---DTIINNVI-FRNVSFILFLNKT-DLL 252 (334)
Q Consensus 178 DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf---~~i~~~~~-~~~~piiL~lNK~-Dl~ 252 (334)
++|||.+.|..|.+||+++++||||||.+|. .|+. +...+ ..+++... +.++|++||+||+ |+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~----------~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAH----------KRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTT----------CCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccH----------hHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 6899999999999999999999999999996 4543 66666 44455543 5889999999995 786
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
.. + ....+.+. +++... .+.+++..|||++|+|+.+.++|+.+.+.++
T Consensus 177 ~A-m--s~~EI~e~----------------------L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 177 KR-M--PCFYLAHE----------------------LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CB-C--CHHHHHHH----------------------TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CC-C--CHHHHHHH----------------------cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 54 3 44445443 455444 4789999999999999999999999876543
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.62 E-value=4.8e-15 Score=126.27 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=89.7
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|||+|+++. .++.+...++..+.... ..+.|++|++||+|
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D 128 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence 46899999999999999999999999999999999986 56677777777776643 35789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++. . ..+.+.++... ..+.++++||+++.||.++|+++.+.+.+
T Consensus 129 l~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 129 LLDARK----V--------------TAEDAQTYAQE----------NGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CTTTCC----S--------------CHHHHHHHHHH----------TTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred cccccc----C--------------CHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 865421 0 11222222211 24678999999999999999999887654
No 73
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.62 E-value=3.4e-15 Score=125.70 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=79.6
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+... ...+.|++|++||+|+
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE----------DSFQKVKNWVKELRKM-LGNEICLCIVGNKIDL 123 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCeEEEEEECccc
Confidence 6789999999999999999999999999999999996 4555555555554432 1246899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
..++. . ..+.+.++... .++.+++|||+++.||+++|+++.+.+.+
T Consensus 124 ~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 124 EKERH----V--------------SIQEAESYAES----------VGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp GGGCC----S--------------CHHHHHHHHHH----------TTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred ccccc----c--------------CHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 76421 0 11222222211 23678999999999999999999988753
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.61 E-value=6.2e-15 Score=129.00 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=89.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+....|...+... ..+.|++|++||+|
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 140 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKHF-CPNVPIILVGNKKD 140 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-STTCCEEEEEECGG
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCCCCEEEEEecHH
Confidence 46889999999999999999999999999999999996 56666533333333322 35789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..+.. ....+.+. ....-..+.+.++.... ....+++|||+++.||.++|+++.+.+++
T Consensus 141 l~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 141 LRQDEH--TRRELAKM----KQEPVRSEEGRDMANRI---------SAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp GTTCHH--HHHHHHTT----TCCCCCHHHHHHHHHHT---------TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred hhcCcc--chhhhccc----ccCcCCHHHHHHHHHhC---------CCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 976432 11122211 11112233333222211 12368999999999999999999987763
No 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=5.1e-15 Score=124.27 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=89.0
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.... ..+.|++|++||+
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 118 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP----------QSFIKARHWVKELHEQA-SKDIIIALVGNKI 118 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECC
Confidence 346899999999999999999999999999999999997 66777777777776643 3678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+..+.- ...+ ..+.+.++... .++.+++|||+++.||.++|+++.+.+
T Consensus 119 Dl~~~~~---~~~v------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 119 DXLQEGG---ERKV------------AREEGEKLAEE----------KGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp GGGGSSC---CCCS------------CHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred Ccccccc---ccCC------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9875411 0111 11222222211 235789999999999999999988754
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.61 E-value=1.8e-15 Score=131.84 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=84.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL~lNK 248 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+..... ..+.|++||+||
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM----------ESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCH----------HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 46899999999999999999999999999999999997 667777777777776543 257899999999
Q ss_pred CCcch-hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec-CchHHHHHHHHHHHHHHH
Q psy3651 249 TDLLA-EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD-TENIKIVFNAVKNTILHR 326 (334)
Q Consensus 249 ~Dl~~-eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d-~~nI~~vf~~v~~~I~~~ 326 (334)
+|+.. ++. . ..+.+.++... .++.+++|||++ +.||.++|+++.+.+.+.
T Consensus 142 ~Dl~~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 142 TDLPPQRHQ----V--------------RLDMAQDWATT----------NTLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp C-------C----C--------------CHHHHHHHHHH----------TTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred cccchhhcc----C--------------CHHHHHHHHHH----------cCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 99876 321 0 11222222221 236789999999 999999999999988865
Q ss_pred hh
Q psy3651 327 NL 328 (334)
Q Consensus 327 ~l 328 (334)
..
T Consensus 194 ~~ 195 (208)
T 2yc2_C 194 YE 195 (208)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 77
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.61 E-value=6.2e-15 Score=127.59 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=97.5
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|...|.||..+. ...+.+++ +.+.+||++|++.++ ++++++++|+|+|+++.
T Consensus 43 ~~~~~~~~~t~~~~-----------~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~-------- 98 (184)
T 3ihw_A 43 GTYVQEESPEGGRF-----------KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDE-------- 98 (184)
T ss_dssp SSCCCCCCTTCEEE-----------EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCH--------
T ss_pred CCCCCCcCCCcceE-----------EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCH--------
Confidence 45556677764321 12333333 678899999998876 88999999999999997
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296 (334)
Q Consensus 217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~ 296 (334)
.++.+...|+..+.......+.|++|++||+|+..+.- ... ..+.+.++... .
T Consensus 99 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~v--------------~~~~~~~~~~~---------~ 151 (184)
T 3ihw_A 99 --ISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANP--RVI--------------DDSRARKLSTD---------L 151 (184)
T ss_dssp --HHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--CCS--------------CHHHHHHHHHH---------T
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc--ccc--------------CHHHHHHHHHH---------c
Confidence 67788788888887654446789999999999853211 111 11222222211 1
Q ss_pred CCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 297 KPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
..+.+++|||+++.||+++|+++.+.++++.
T Consensus 152 ~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 152 KRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 2367899999999999999999999988754
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.61 E-value=5.4e-15 Score=129.02 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEeC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLNK 248 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lNK 248 (334)
+.+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.... ...+.|++|++||
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP----------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 6899999999999999999999999999999999986 44444445555544332 2246899999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
+|+....+ . .+.+..+... ...+.+++|||+++.||.++|+++.+.+.+..
T Consensus 127 ~Dl~~~~~--~-----------------~~~~~~~~~~---------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 127 IDLENRQV--A-----------------TKRAQAWCYS---------KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTSSCCCS--C-----------------HHHHHHHHHH---------TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCccccc--C-----------------HHHHHHHHHh---------cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99864322 1 1112212111 13456899999999999999999999988654
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.61 E-value=3.1e-15 Score=127.60 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=86.9
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|...|.||..+..... . .+.-..+.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 31 ~~~~~~~~~t~~~~~~~~---~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---------- 92 (182)
T 3bwd_D 31 NTFPTDYVPTVFDNFSAN---V-----VVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK---------- 92 (182)
T ss_dssp SCCC----------CBCC---C-----C-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH----------
T ss_pred CCCCCCCCCeeeeeEEEE---E-----EECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH----------
Confidence 345566777765443211 1 1122346788999999999999999999999999999999986
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..++- . ... .+ ....-..+.+.++.... .
T Consensus 93 ~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~---~~~-~~--~~~~v~~~~~~~~~~~~---------~ 153 (182)
T 3bwd_D 93 ASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQ--F---FID-HP--GAVPITTVQGEELKKLI---------G 153 (182)
T ss_dssp HHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH--H---HHH-C----CCCCCHHHHHHHHHHH---------T
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcc--c---ccc-cc--cCCCCCHHHHHHHHHHc---------C
Confidence 5566655 344444332 24789999999999866432 1 000 00 00011223333222221 1
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
...+++|||+++.||.++|+++.+.++
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 136889999999999999999988764
No 80
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.60 E-value=4.6e-15 Score=126.77 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~ 218 (334)
+.|.+.|.||..+..... ..+....+.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 28 ~~~~~~~~~t~~~~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---------- 89 (186)
T 1mh1_A 28 NAFPGEYIPTVFDNYSAN--------VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP---------- 89 (186)
T ss_dssp SSCCSSCCCCSCCEEEEE--------EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------
T ss_pred CCCCCCcCCcccceeEEE--------EEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh----------
Confidence 345567777765432111 11122346788999999999999999999999999999999996
Q ss_pred ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..+.- ....+.+. ....-..+.+..+.... .
T Consensus 90 ~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~ 152 (186)
T 1mh1_A 90 ASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKEI---------G 152 (186)
T ss_dssp HHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT---------T
T ss_pred hhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccch--hhhhhccc----ccccCCHHHHHHHHHhc---------C
Confidence 5666665 355554443 24789999999999865421 11111110 00111223332222110 1
Q ss_pred CeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
...+++|||+++.||.++|+++.+.+++.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 23789999999999999999999887643
No 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.60 E-value=5.7e-15 Score=127.52 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=88.5
Q ss_pred EEEeeC--cceeeeecCCccccc-ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQR-RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r-~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
.+.+++ ..+.+||++|++.++ ..|..++++++++|||+|+++. .++.....|+..+.......+.|+
T Consensus 61 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~pi 130 (189)
T 1z06_A 61 AVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNM----------ASFHSLPAWIEECKQHLLANDIPR 130 (189)
T ss_dssp EEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHCCCSCCCE
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCCE
Confidence 344443 789999999999998 8999999999999999999997 566666677777776544567899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC---chHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT---ENIKIVFNAV 319 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~---~nI~~vf~~v 319 (334)
+|++||+|+..++- . ..+.+..+.. ..++.+++|||+++ .||.++|.++
T Consensus 131 ilv~nK~Dl~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 131 ILVGNKCDLRSAIQ----V--------------PTDLAQKFAD----------THSMPLFETSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp EEEEECTTCGGGCC----S--------------CHHHHHHHHH----------HTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred EEEEECccccccce----e--------------CHHHHHHHHH----------HcCCEEEEEeCCcCCcccCHHHHHHHH
Confidence 99999999965421 0 1111211111 12356899999999 9999999999
Q ss_pred HHHHHH
Q psy3651 320 KNTILH 325 (334)
Q Consensus 320 ~~~I~~ 325 (334)
.+.+.+
T Consensus 183 ~~~i~~ 188 (189)
T 1z06_A 183 AHKLKS 188 (189)
T ss_dssp C-----
T ss_pred HHHHhh
Confidence 887653
No 82
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=133.09 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=76.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+.. .|+..+... ..++|++||+||+
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 148 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP----------NSFDNIFNRWYPEVNHF--CKKVPIIVVGCKT 148 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--CSSCCEEEEEECG
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 46789999999999999999999999999999999997 5666665 345554432 3678999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
|+..++- ....+... ....-..+.+.++.... ....+++|||+++.||+++|+++.+.+++...
T Consensus 149 Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 149 DLRKDKS--LVNKLRRN----GLEPVTYHRGQEMARSV---------GAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp GGGSCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT---------TCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred hhhccch--hhhhhccc----ccCcccHHHHHHHHHhc---------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9976431 11111110 01112233333222211 11378999999999999999999999987543
No 83
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.60 E-value=2.5e-15 Score=126.40 Aligned_cols=122 Identities=14% Similarity=0.213 Sum_probs=90.2
Q ss_pred EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+.... ..+.|+
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~pi 111 (170)
T 1g16_A 43 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------RTFTNIKQWFKTVNEHA-NDEAQL 111 (170)
T ss_dssp EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred EEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcE
Confidence 3444443 6789999999999999999999999999999999986 45555556666665432 357899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+|++||+|+....+ . .+.+.++... .++.+++|||+++.||.++|+++.+.
T Consensus 112 ilv~nK~Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 112 LLVGNKSDMETRVV--T-----------------ADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp EEEEECTTCTTCCS--C-----------------HHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEECccCCcCcc--C-----------------HHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999943222 1 1222222221 13568999999999999999999998
Q ss_pred HHHH
Q psy3651 323 ILHR 326 (334)
Q Consensus 323 I~~~ 326 (334)
+.++
T Consensus 163 ~~~~ 166 (170)
T 1g16_A 163 IQEK 166 (170)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 84
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.60 E-value=1.1e-14 Score=128.41 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=88.9
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+.. .|+..+... ..+.|++|++||+
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 142 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence 46789999999999999999999999999999999997 5666663 444544432 3578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee-cCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV-DTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~-d~~nI~~vf~~v~~~I~~ 325 (334)
|+..+.- ....+... ....-+.+.+.++.... ..+.+++|||+ ++.||+++|+++.+.+++
T Consensus 143 Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 143 DLRTDVS--TLVELSNH----RQTPVSYDQGANMAKQI---------GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp GGGGCHH--HHHHHHTT----TCCCCCHHHHHHHHHHH---------TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccchh--hhhhhccc----ccCCCCHHHHHHHHHHc---------CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9975311 11111100 00111233343333221 12568999998 689999999999998875
No 85
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.60 E-value=7.3e-15 Score=124.79 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=90.8
Q ss_pred EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
...+.+++..+.+||++|++.++..|..++.+++++|+|+|+++. ...+++..+..+.. .+.|++
T Consensus 47 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~l~~~~~----~~~p~i 111 (178)
T 2lkc_A 47 AYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-----------VMPQTVEAINHAKA----ANVPII 111 (178)
T ss_dssp CCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-----------CCHHHHHHHHHHGG----GSCCEE
T ss_pred EEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHh----CCCCEE
Confidence 345566778899999999999999999999999999999999883 34455555544422 468999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|++||+|+..... ..+...+.++ ..+.......+.+++|||+++.||+++|+++.+.+
T Consensus 112 lv~nK~Dl~~~~~----~~~~~~~~~~------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 112 VAINKMDKPEANP----DRVMQELMEY------------------NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp EEEETTTSSCSCH----HHHHHHHTTT------------------TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred EEEECccCCcCCH----HHHHHHHHhc------------------CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 9999999865311 1111110000 00011111237899999999999999999999988
Q ss_pred HHHhhh
Q psy3651 324 LHRNLR 329 (334)
Q Consensus 324 ~~~~l~ 329 (334)
....++
T Consensus 170 ~~~~~~ 175 (178)
T 2lkc_A 170 EMEELK 175 (178)
T ss_dssp HHTTTT
T ss_pred hhhccc
Confidence 776654
No 86
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.59 E-value=7.8e-15 Score=126.53 Aligned_cols=113 Identities=23% Similarity=0.259 Sum_probs=88.0
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.++..|..++++++++|||+|+++. ..+.+...|+..+.... +.|+++++||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~---~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS----------NTLDRAKTWVNQLKISS---NYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence 6799999999999999999999999999999999997 56666667777776543 3899999999993
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
....+ ..+.+.+++.+ ..+.+++|||+++.||.++|+++.+.+.++
T Consensus 160 ~~~~~-------------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 NKFQV-------------------DILEVQKYAQD----------NNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp C-CCS-------------------CHHHHHHHHHH----------TTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccC-------------------CHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 22111 12223323322 246789999999999999999999988765
No 87
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=7.8e-15 Score=128.93 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=90.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+.. .|+..+... ..+.|++|++||+
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP----------DSLENIPEKWVPEVKHF--CPNVPIILVANKK 139 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence 36889999999999999999999999999999999996 5566653 344443332 3578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~ 327 (334)
|+..+.. ....+... ....-..+.+..+.... ....+++|||+++.||+++|+++.+.+++..
T Consensus 140 Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 140 DLRSDEH--VRTELARM----KQEPVRTDDGRAMAVRI---------QAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp GGGGCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT---------TCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred hhhcccc--chhhhhhc----ccCCCCHHHHHHHHHhc---------CCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9976432 12222221 11111223332222111 1236889999999999999999999887654
No 88
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.6e-15 Score=129.43 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=88.5
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
....+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+... ...+.|++|++||+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ----------DSFYTLKKWVKELKEH-GPENIVMAIAGNKC 138 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCT----------HHHHHHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHh-CCCCCcEEEEEECc
Confidence 347899999999999999999999999999999999997 5666666666666553 24578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+..++- . ..+.+.++.. ..++.+++|||+++.||+++|+++.+.+.+
T Consensus 139 Dl~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 139 DLSDIRE----V--------------PLKDAKEYAE----------SIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp GGGGGCC----S--------------CHHHHHHHHH----------TTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccccccc----c--------------CHHHHHHHHH----------HcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9865321 1 1122222211 134678999999999999999999887654
No 89
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.59 E-value=1.1e-14 Score=123.43 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=86.8
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.++..|..++.+++++|+|+|+++. .++.+...++..+.... ..+.|++|++||+|+
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl 131 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT----------NSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDL 131 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcc
Confidence 6899999999999999999999999999999999986 55566666666665532 357899999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
..++. . ..+.+..+... ..+.++++||+++.||+++|+++.+.+.
T Consensus 132 ~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 132 SDKRQ--V----------------STEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp GGGCC--S----------------CHHHHHHHHHH----------HTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred cccCc--C----------------CHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 65421 0 11122222221 1367899999999999999999987654
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.59 E-value=2.9e-15 Score=124.90 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=89.2
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|+..++..|..++.+++++|+|+|+++. .++.+...++..+.......+.|+++++||+|
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 46788999999999999999999999999999999986 56666677777766654445789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..... . .+.+.++... .++.++++||+++.|+.++|+++.+.+.+
T Consensus 120 l~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 120 LAARTV--E-----------------SRQAQDLARS----------YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CSCCCS--C-----------------HHHHHHHHHH----------HTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred hhhccc--C-----------------HHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 865322 1 1122222211 13568999999999999999999987753
No 91
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.59 E-value=5.4e-15 Score=129.95 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.+...|.||..|... ..+.+. .+.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 53 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------- 114 (204)
T 4gzl_A 53 NAFPGEYIPTVFDNYS----------ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP-------- 114 (204)
T ss_dssp SCCCC-CCCCSEEEEE----------EEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH--------
T ss_pred CCCCCCcCCeecceeE----------EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH--------
Confidence 4555677777654321 122222 35677999999999999999999999999999999997
Q ss_pred ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.++.+.. .|+..+... . .+.|++|++||+|+..++. ....+.+. ....-..+.+..+...
T Consensus 115 --~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~--------- 175 (204)
T 4gzl_A 115 --ASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKE--------- 175 (204)
T ss_dssp --HHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHH---------
T ss_pred --HHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchh--hhhhhhcc----ccccccHHHHHHHHHh---------
Confidence 6666665 344444433 2 6789999999999876432 11111110 0011122333222221
Q ss_pred CCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 296 KKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
.....+++|||+++.||.++|+++.+.+
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 176 IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1224589999999999999999998754
No 92
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.59 E-value=8.9e-15 Score=123.19 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=86.2
Q ss_pred CcceeeeecCCcccccc-cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRR-KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~-kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++|+..++. .|..++++++++|+|+|+++. .++.+...++..+.......+.|++|++||+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCCh----------HHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 46788999999998876 888899999999999999997 6777777888888776555689999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. . ..+.+..+.. ...+.+++|||+++.||.++|+++.+.+..+
T Consensus 120 Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 120 DLARSRE----V--------------SLEEGRHLAG----------TLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TCGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred chhhccc----C--------------CHHHHHHHHH----------HcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 9875421 1 1112211111 1246789999999999999999999988653
No 93
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=5.5e-15 Score=129.53 Aligned_cols=122 Identities=14% Similarity=0.218 Sum_probs=90.4
Q ss_pred EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
..+.+.+ +.+.+||++|++.++..|..++.+++++|||+|+++. .++.+...++..+.... ..+.|+
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~pi 128 (213)
T 3cph_A 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE----------RTFTNIKQWFKTVNEHA-NDEAQL 128 (213)
T ss_dssp EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHT-TTCSEE
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCCE
Confidence 3445554 7899999999999999999999999999999999986 45555556666655432 247899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+||+||+|+....+ . .+.+..+... ..+.+++|||+++.||.++|+++.+.
T Consensus 129 ilv~nK~Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 129 LLVGNKSDMETRVV--T-----------------ADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp EEEEECTTCSSCCS--C-----------------HHHHHHHHHH----------HTCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred EEEEECCCCccccc--C-----------------HHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999843222 1 1122222211 12468999999999999999999998
Q ss_pred HHHH
Q psy3651 323 ILHR 326 (334)
Q Consensus 323 I~~~ 326 (334)
+.+.
T Consensus 180 ~~~~ 183 (213)
T 3cph_A 180 IQEK 183 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 94
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.58 E-value=2.6e-14 Score=120.05 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=87.0
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|+|+|+++. .++.+...++..+... ...+.|++|++||+|
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE----------ETFSTLKNWVRELRQH-GPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCTTSEEEEEEECTT
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCCCcEEEEEECCc
Confidence 47899999999999999999999999999999999996 5566666666666553 346789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+..++- . ..+.+..+.. ...+.++++||+++.||+++|+++.+.+.
T Consensus 123 l~~~~~--v----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 123 LTDVRE--V----------------MERDAKDYAD----------SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp CGGGCC--S----------------CHHHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cccccc--c----------------CHHHHHHHHH----------HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 975421 0 0111221111 12467899999999999999999987653
No 95
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=122.31 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=83.6
Q ss_pred CcceeeeecCCccc--ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 171 NIPFLFVDVGGQRS--QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 171 ~~~~~i~DvgGq~~--~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
...+.+||++|+.. ++..+..++++++++|+|+|+++. .++.....++..+.......+.|++|++||
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADR----------GSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCH----------HHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 36789999999998 566677889999999999999997 667777777777766544467899999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l 328 (334)
+|+..++- . ..+.+..+... .++.+++|||+++.||.++|+++.+.+.....
T Consensus 121 ~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 121 ADLARCRE----V--------------SVEEGRACAVV----------FDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp TTCTTTCC----S--------------CHHHHHHHHHH----------HTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred hhhccccc----c--------------CHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 99965421 0 11122212111 13578999999999999999999998876543
No 96
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=128.33 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=86.9
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+.. ....+.|++|++||+|
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~~~~i~~-~~~~~~piilV~NK~D 142 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----------ETFDDLPKWMKMIDK-YASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHH-HSCTTCEEEEEEECGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHH-hcCCCCcEEEEEECcc
Confidence 36899999999999999999999999999999999996 445544444444433 3345789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+..++- . ..+.+.++.. . -..+.+++|||+++.||+++|+++.+.++++
T Consensus 143 l~~~~~----v--------------~~~~~~~~~~--------~-~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 143 CETDRE----I--------------TRQQGEKFAQ--------Q-ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp GGGGCC----S--------------CHHHHHHHHH--------T-STTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cccccc----c--------------CHHHHHHHHH--------h-cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 865421 0 0111111111 1 1346789999999999999999999988753
No 97
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.57 E-value=9.9e-15 Score=127.57 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=89.9
Q ss_pred CcceeeeecCCcccccc-cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRR-KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~-kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+.+.+||++|+..++. .|..|+++++++|+|+|+++. .++.+...|+..+.......++|++|++||+
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 46788999999998765 788899999999999999997 6666777777777765444578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. .. .+.+..+... ..+.+++|||+++.||+++|+++.+.+.+.
T Consensus 141 Dl~~~~~----v~--------------~~~~~~~a~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 141 DLARSRE----VS--------------LEEGRHLAGT----------LSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TCTTTCC----SC--------------HHHHHHHHHH----------TTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred hccccCC----cC--------------HHHHHHHHHH----------hCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 9865421 11 1222222111 235789999999999999999999988654
No 98
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=2.5e-14 Score=127.55 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=87.5
Q ss_pred cceeeeecCCccc-ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQRS-QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 172 ~~~~i~DvgGq~~-~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+.+.+||++|+.. ++..+..|+++++++|+|+|+++. .++.....|+..+.......++|++||+||+|
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~----------~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D 156 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGNKSD 156 (211)
T ss_dssp EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCH----------HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence 5678999999987 566778889999999999999997 67777777777766533335789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|..++. .. .+.+..+.. ...+.+++|||+++.||+++|+++.+.+...
T Consensus 157 L~~~r~----v~--------------~~e~~~~a~----------~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 157 LVRCRE----VS--------------VSEGRACAV----------VFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp CGGGCC----SC--------------HHHHHHHHH----------HHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HhcCce----Ee--------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 965421 11 111111111 1235789999999999999999999988654
No 99
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.57 E-value=7.8e-15 Score=130.07 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=90.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+++.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+... ..+.|++||+||+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 129 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRV--CENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH--STTCCEEEEEECT
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECC
Confidence 457899999999999999999999999999999999997 5666666666666654 3578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
|+..++. .. .... +.. ...+.+++|||+++.||.++|+++.+.+...
T Consensus 130 Dl~~~~~--~~-~~~~-----------------~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 130 DIKDRKV--KA-KSIV-----------------FHR----------KKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TSSSCSS--CG-GGCC-----------------HHH----------HHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred ccccccc--cH-HHHH-----------------HHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9976543 11 1111 111 1246789999999999999999999988764
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.56 E-value=3e-14 Score=125.36 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=64.9
Q ss_pred eEEEEEee---CcceeeeecCCcccccc-cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc--C
Q psy3651 163 TEFTIVIS---NIPFLFVDVGGQRSQRR-KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV--I 236 (334)
Q Consensus 163 ~~~~~~~~---~~~~~i~DvgGq~~~r~-kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~--~ 236 (334)
....+.++ ++.+.+||++||..++. .|..|+++++++|||+|++++. ..+.+...++..++... .
T Consensus 42 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~ 112 (214)
T 2fh5_B 42 SSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQVLIDSMAL 112 (214)
T ss_dssp EEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHTS
T ss_pred eeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC---------HHHHHHHHHHHHHHhhhhhc
Confidence 33335555 57899999999999998 8999999999999999999851 34667777777766542 2
Q ss_pred CCCCcEEEEEeCCCcchh
Q psy3651 237 FRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~e 254 (334)
..+.|++|++||+|+..+
T Consensus 113 ~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 113 KNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp TTCCEEEEEEECTTSTTC
T ss_pred ccCCCEEEEEECCCCCCc
Confidence 346899999999999754
No 101
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=2.3e-15 Score=130.37 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=86.4
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC-CCCCcEEEEEeC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI-FRNVSFILFLNK 248 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~-~~~~piiL~lNK 248 (334)
....+.+||++|++.++..|..++.+++++|+|+|+++. .++.+...++..+..... ..+.|++|++||
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK----------QSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 346789999999999999999999999999999999986 445544455544443221 356899999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+|+..+.+ . .+.+..+... ..+.+++|||+++.||.++|+++.+.+.++
T Consensus 124 ~Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 124 CDETQREV--D-----------------TREAQAVAQE----------WKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTCSSCSS--C-----------------HHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred ccCCcccc--C-----------------HHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 99865322 1 1112212111 235789999999999999999999877654
No 102
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.5e-14 Score=121.60 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=84.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~~~~piiL~lNK~ 249 (334)
...+.+||++|++.++..|..++.+++++|+|+|+++. .++.+...++..+... ....+.|++|++||+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~ 119 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR----------QSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcc
Confidence 46789999999999999999999999999999999986 4555555566555543 223578999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
|+..++- +. .+.+..+... .++.++++||+++.||+++|+++.+.+.
T Consensus 120 Dl~~~~~------v~------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 120 DESPSRE------VQ------------SSEAEALART----------WKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGGGGCC------SC------------HHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ccccccc------cC------------HHHHHHHHHH----------hCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 9865421 00 1111111111 2357899999999999999999987654
No 103
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=125.95 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=85.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+.+||++|++.++..|..++++++++|||+|+++. .++.+...|+..+... ...+.|++||+||+|
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~NK~D 144 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE----------KSFLNIREWVDMIEDA-AHETVPIMLVGNKAD 144 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-C---CCEEEEEECGG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 47799999999999999999999999999999999986 4455555555544332 235789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..... . ..... -..+.+..+... ..+.+++|||+++.||.++|.++.+.+.+
T Consensus 145 l~~~~~--~-~~~~~---------v~~~~~~~~~~~----------~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 145 IRDTAA--T-EGQKC---------VPGHFGEKLAMT----------YGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp GHHHHH--H-TTCCC---------CCHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cccccc--c-ccccc---------cCHHHHHHHHHH----------cCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 975321 0 00000 112222222221 23578999999999999999999987753
No 104
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.54 E-value=1.9e-15 Score=140.11 Aligned_cols=112 Identities=8% Similarity=0.081 Sum_probs=83.7
Q ss_pred ecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH---HHHhhcC-CCCCcEEEEEeC-CCcc
Q psy3651 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD---TIINNVI-FRNVSFILFLNK-TDLL 252 (334)
Q Consensus 178 DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~---~i~~~~~-~~~~piiL~lNK-~Dl~ 252 (334)
|+|||.+.|..|.+||++++|+|||||.+|. .|+. +...+. .+++... ..++|++|++|| +|+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr----------eRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAH----------KRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTT----------CCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcH----------hHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 4799999999999999999999999999998 5654 555444 4555443 688999999996 6886
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
.. + ....+.+. +++... .+.+++..|||++|+|+.+.++|+.+.+.++
T Consensus 262 ~A-m--s~~EI~e~----------------------L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 262 KR-M--PCFYLAHE----------------------LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp CB-C--CHHHHHHH----------------------TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CC-C--CHHHHHHH----------------------cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 54 3 44444443 445443 3789999999999999999999999877543
No 105
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.54 E-value=3.4e-14 Score=125.34 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=91.5
Q ss_pred eeecceeEEEEEee---C--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 157 KATKGITEFTIVIS---N--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~---~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
.+|+|.......+. + +.+.+||++|++.++..|..++.+++++|+|+|+++. .++.+...|+..+
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~ 110 (218)
T 4djt_A 41 NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR----------ITCQNLARWVKEF 110 (218)
T ss_dssp ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHH
T ss_pred CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHH
Confidence 44555554443332 1 6799999999999999999999999999999999997 4444444444544
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
... ...+.|++||+||+|+..++. ... +.+ ..+ .....+.+++|||+++.|
T Consensus 111 ~~~-~~~~~piilv~nK~Dl~~~~~--~~~----------------~~~--------~~~--~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 111 QAV-VGNEAPIVVCANKIDIKNRQK--ISK----------------KLV--------MEV--LKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp HHH-HCSSSCEEEEEECTTCC------CCH----------------HHH--------HHH--TTTCCCEEEEEBTTTTBT
T ss_pred HHh-cCCCCCEEEEEECCCCccccc--cCH----------------HHH--------HHH--HHHcCCcEEEEecCCCCC
Confidence 432 224589999999999865421 000 011 111 123457799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTILHR 326 (334)
Q Consensus 312 I~~vf~~v~~~I~~~ 326 (334)
|+++|+++.+.+.+.
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988754
No 106
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=131.22 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=84.4
Q ss_pred eeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 158 ATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 158 ~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+|+|.+ ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++. .++.+...|+..+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~ 133 (199)
T 3l0i_B 64 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDR 133 (199)
T ss_dssp HHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS----------HHHHHHHHHHHHHHS
T ss_pred CcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHH
Confidence 444433 34444544 7899999999999999999999999999999999997 666777677666644
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
. ...+.|++|++||+|+..++.. .......+ . ....+.+++|||+++.||.
T Consensus 134 ~-~~~~~p~ilv~nK~Dl~~~~~v-~~~~~~~~----------------------~-----~~~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 134 Y-ASENVNKLLVGNKCDLTTKKVV-DYTTAKEF----------------------A-----DSLGIPFLETSAKNATNVE 184 (199)
T ss_dssp C-C-CCSEEEEC-CCSSCC--CCC-CSCC-CHH----------------------H-----HTTTCCBCCCCC---HHHH
T ss_pred h-ccCCCCEEEEEECccCCccccC-CHHHHHHH----------------------H-----HHcCCeEEEEECCCCCCHH
Confidence 2 3357899999999999765320 11111110 0 0123568899999999999
Q ss_pred HHHHHHHHHHH
Q psy3651 314 IVFNAVKNTIL 324 (334)
Q Consensus 314 ~vf~~v~~~I~ 324 (334)
++|+++.+.+.
T Consensus 185 ~l~~~l~~~l~ 195 (199)
T 3l0i_B 185 QSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 107
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.51 E-value=1.4e-13 Score=119.86 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=84.7
Q ss_pred cceeeeecCCccc-ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQRS-QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 172 ~~~~i~DvgGq~~-~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+.+.+||+.|+.. ++..+..|+++++++|+|+|+++. .++.....|+..+.......++|++|++||+|
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence 5678999999987 677888899999999999999997 67777767776666543345789999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
+..++. ... +.+..+.. ...+.+++|||+++.||.++|+++.+.+...
T Consensus 126 l~~~r~----v~~--------------~~~~~~a~----------~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 126 LVRXRE----VSV--------------SEGRAXAV----------VFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp CGGGCC----SCH--------------HHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hhcccc----ccH--------------HHHHHHHH----------HhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 865421 111 11111100 1235689999999999999999999988644
No 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.50 E-value=8.9e-14 Score=121.08 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred eCcceeeeecCCccccccc-c--cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651 170 SNIPFLFVDVGGQRSQRRK-W--FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL 246 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~k-w--~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l 246 (334)
+.+.+++||++||+.+++. | ..||++++++|||+|+++. ....+.....++..+.. ...++|++||+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~--~~~~~piilv~ 136 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYK--VNPDMNFEVFI 136 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHH--HCTTCEEEEEE
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHh--cCCCCcEEEEE
Confidence 4589999999999997555 5 8999999999999999983 01234444445555433 24689999999
Q ss_pred eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
||+|+..+.. ...... .+..-....+.... .....+.+++|||++ .||.++|..+.+.|
T Consensus 137 nK~Dl~~~~~--~~~~~~--------------~v~~~~~~~~~~~~-~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 137 HKVDGLSDDH--KIETQR--------------DIHQRANDDLADAG-LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ECGGGSCHHH--HHHHHH--------------HHHHHHHHHHHHTT-CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred eccccCchhh--hhHHHh--------------HHHHHHHHHHHHhh-hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 9999865421 000000 01111111211111 113568899999999 99999999998765
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.49 E-value=1.7e-13 Score=128.17 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=98.4
Q ss_pred CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651 139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216 (334)
Q Consensus 139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~ 216 (334)
+.|...|.||..|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++.
T Consensus 178 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------- 239 (332)
T 2wkq_A 178 NAFPGEYIPTVFDNYS----------ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP-------- 239 (332)
T ss_dssp SCCCCSCCCCSEEEEE----------EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH--------
T ss_pred CCCCcccCCcccceeE----------EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH--------
Confidence 4555677776644321 122333 35677999999999999999999999999999999997
Q ss_pred ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651 217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE 295 (334)
Q Consensus 217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~ 295 (334)
.++.+.. .|+..+... ..+.|++|++||+|+..++- ....+... ....-..+.+.++....
T Consensus 240 --~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~-------- 301 (332)
T 2wkq_A 240 --ASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKEI-------- 301 (332)
T ss_dssp --HHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT--------
T ss_pred --HHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccc--hhhhcccc----ccccccHHHHHHHHHHc--------
Confidence 5666665 344444432 24789999999999865421 11111110 00112233333232211
Q ss_pred CCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 296 KKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
....+++|||+++.||.++|+++.+.+++
T Consensus 302 -~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 302 -GAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp -TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred -CCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 12378999999999999999999988764
No 110
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.24 E-value=2.1e-15 Score=132.04 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=84.2
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK 248 (334)
..+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+.. .|+..+... ..+.|++|++||
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~~l~~~--~~~~piilv~NK 143 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHH--CPNTPIILVGTK 143 (204)
Confidence 346788999999999999999999999999999999987 5555555 344433322 237899999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
+|+..+.- ....+... .......+.+..+ ....++ .+++|||+++.||+++|+++.+.++
T Consensus 144 ~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~----------~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 144 LDLRDDKD--TIEKLKEK----KLTPITYPQGLAM----------AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 99976421 11111110 0000001111111 111233 6789999999999999999987653
No 111
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.44 E-value=8.6e-14 Score=119.97 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=82.8
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
+.+.+.+||++||+.++..|..|+++++++++|+|+++.. .++.+...|+..+... ..++|++|++||+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~s~~~~~~~~~~~~~~--~~~~piilv~nK~ 122 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ---------AEVDAMKPWLFNIKAR--ASSSPVILVGTHL 122 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH---------HHHHTHHHHHHHHHHH--CTTCEEEEEEECG
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch---------hHHHHHHHHHHHHHhh--CCCCcEEEEEECC
Confidence 3578999999999999999999999999999999998851 1344444556655443 2478999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe----EEEEEeeecCc-hHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL----FHHFTTAVDTE-NIKIVFNAVKNTIL 324 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i----~~~~tsA~d~~-nI~~vf~~v~~~I~ 324 (334)
|+..++. .. .... -+. ..+.. ..++ .+++|||+++. ++.++++.+.+.+.
T Consensus 123 Dl~~~~~--~~-~~~~-----------------~~~---~~~~~--~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 123 DVSDEKQ--RK-ACMS-----------------KIT---KELLN--KRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp GGCCHHH--HH-HHHH-----------------HHH---HHTTT--CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred Ccccchh--hH-HHHH-----------------HHH---HHHHH--hcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 9876432 10 0000 001 11111 1223 37899999996 99999999888776
Q ss_pred H
Q psy3651 325 H 325 (334)
Q Consensus 325 ~ 325 (334)
+
T Consensus 178 ~ 178 (184)
T 2zej_A 178 N 178 (184)
T ss_dssp C
T ss_pred c
Confidence 4
No 112
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.39 E-value=1.3e-12 Score=122.39 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=85.4
Q ss_pred CCCC-CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651 139 SPLF-QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217 (334)
Q Consensus 139 ~~f~-~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~ 217 (334)
+.|. ++|.||..|..... +.. +.++.+||+ |++++.+|..||++++++|+|+|+++.+.
T Consensus 40 ~~f~~~~~~pTiGd~~~~~----------~~~-~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~------- 99 (301)
T 1u0l_A 40 GKFRLQNLKIYVGDRVEYT----------PDE-TGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET------- 99 (301)
T ss_dssp GGGTTTTCCCCTTCEEEEE----------CCC-SSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC-------
T ss_pred ccccccCCCCCCccEEEEE----------EcC-CCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC-------
Confidence 5565 67888766543211 111 237899999 99999999999999999999999998621
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK 297 (334)
Q Consensus 218 ~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~ 297 (334)
.+...-.|+..+ .. .++|++|++||+||..++. .. .+.++.. .+. ..
T Consensus 100 --s~~~l~~~l~~~-~~---~~~piilv~NK~DL~~~~~---v~-----------------~~~~~~~-~~~------~~ 146 (301)
T 1u0l_A 100 --STYIIDKFLVLA-EK---NELETVMVINKMDLYDEDD---LR-----------------KVRELEE-IYS------GL 146 (301)
T ss_dssp --CHHHHHHHHHHH-HH---TTCEEEEEECCGGGCCHHH---HH-----------------HHHHHHH-HHT------TT
T ss_pred --CHHHHHHHHHHH-HH---CCCCEEEEEeHHHcCCchh---HH-----------------HHHHHHH-HHh------hh
Confidence 222222333333 22 4789999999999865421 00 1111221 111 12
Q ss_pred CeEEEEEeeecCchHHHHHHHHHH
Q psy3651 298 PLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 298 ~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+.+++|||+++.||+++|..+..
T Consensus 147 -~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 147 -YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp -SCEEECCTTTCTTHHHHHHHHSS
T ss_pred -CcEEEEECCCCcCHHHHHHHhcC
Confidence 56899999999999999988754
No 113
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.39 E-value=4.3e-13 Score=125.99 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=91.6
Q ss_pred eeecceeEEEEEe-eCcceeeeecCCcccc-----cccccccccCCCeEEEEEeCCCccchhhcccccccHHHH---HHH
Q psy3651 157 KATKGITEFTIVI-SNIPFLFVDVGGQRSQ-----RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHES---RNI 227 (334)
Q Consensus 157 ~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~-----r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~es---l~l 227 (334)
.+|+|+....+.+ ++..+.+||++||+.+ +..|..++++++++|+|+|+++. .++.+. ..+
T Consensus 36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~----------~s~~~l~~~~~~ 105 (307)
T 3r7w_A 36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST----------EVLKDIEIFAKA 105 (307)
T ss_dssp CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS----------CHHHHHHHHHHH
T ss_pred CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh----------hhHHHHHHHHHH
Confidence 5677877777765 5689999999999998 88999999999999999999997 444444 333
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEee
Q psy3651 228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTA 306 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA 306 (334)
+..+... ..++|++|++||+|+..+.- .. .+... ..+.+. .+....+ ..+.+++|||
T Consensus 106 l~~l~~~--~~~~piilv~NK~Dl~~~~~--r~-~~~~v---------~~~~~~--------~~~~~~g~~~~~~~~tSa 163 (307)
T 3r7w_A 106 LKQLRKY--SPDAKIFVLLHKMDLVQLDK--RE-ELFQI---------MMKNLS--------ETSSEFGFPNLIGFPTSI 163 (307)
T ss_dssp HHHHHHH--CTTCEEEEEEECGGGSCHHH--HH-HHHHH---------HHHHHH--------HHHHTTTCCSCEEEECCT
T ss_pred HHHHHHh--CCCCeEEEEEecccccchhh--hh-HHHHH---------HHHHHH--------HHHHHcCCCCeEEEEeee
Confidence 4444432 36799999999999876210 00 00000 001111 1111111 1378999999
Q ss_pred ecCchHHHHHHHHHHHH
Q psy3651 307 VDTENIKIVFNAVKNTI 323 (334)
Q Consensus 307 ~d~~nI~~vf~~v~~~I 323 (334)
++ .++.++|..+...+
T Consensus 164 ~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 164 WD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TS-SHHHHHHHHHHHTT
T ss_pred cC-ChHHHHHHHHHHHH
Confidence 99 89999998887654
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.38 E-value=1e-11 Score=108.18 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=89.0
Q ss_pred EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651 166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI 243 (334)
Q Consensus 166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii 243 (334)
.+.+.+ +.+.+||++|++.+++.|..++++++++|+|+|+++. .++.+...|+..+... ...+.|++
T Consensus 46 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~i~ 114 (199)
T 2f9l_A 46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH----------LTYENVERWLKELRDH-ADSNIVIM 114 (199)
T ss_dssp EEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCeEE
Confidence 444544 6788999999999999999999999999999999986 4455555555555432 23568999
Q ss_pred EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
+++||+|+...+- .+ .+.+..+.. . ..+.++.|||+++.++.++|+++.+.+
T Consensus 115 ~v~nK~Dl~~~~~----~~--------------~~~a~~l~~--------~--~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 115 LVGNKSDLRHLRA----VP--------------TDEARAFAE--------K--NNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EEEECTTCGGGCC----SC--------------HHHHHHHHH--------H--TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcccccccC----cC--------------HHHHHHHHH--------H--cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999865421 11 122222221 1 235678899999999999999999988
Q ss_pred HHH
Q psy3651 324 LHR 326 (334)
Q Consensus 324 ~~~ 326 (334)
.+.
T Consensus 167 ~~~ 169 (199)
T 2f9l_A 167 YRI 169 (199)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.38 E-value=1.9e-12 Score=107.72 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=79.5
Q ss_pred eeEEEEEeeCcceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 162 ITEFTIVISNIPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.....+...+..+.+||++|+.. .+..|..++++++++|||+|.++.. ... ..++..++..
T Consensus 39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~---~~~~~~~~~~ 106 (161)
T 2dyk_A 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL---------TQA---DYEVAEYLRR 106 (161)
T ss_dssp CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC---------CHH---HHHHHHHHHH
T ss_pred ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc---------cHh---HHHHHHHHHh
Confidence 34445566778899999999987 4567888999999999999999841 111 1223333332
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIK 313 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~ 313 (334)
.+.|+++++||+|+..++. .+.++ .. .++ .+++|||+++.||+
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~~-----~~~~~----------------------~~------~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 107 ---KGKPVILVATKVDDPKHEL-----YLGPL----------------------YG------LGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp ---HTCCEEEEEECCCSGGGGG-----GCGGG----------------------GG------GSSCSCEECBTTTTBSHH
T ss_pred ---cCCCEEEEEECcccccchH-----hHHHH----------------------Hh------CCCCCeEEEecccCCChH
Confidence 4689999999999876421 11111 10 112 47899999999999
Q ss_pred HHHHHHHHHH
Q psy3651 314 IVFNAVKNTI 323 (334)
Q Consensus 314 ~vf~~v~~~I 323 (334)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.38 E-value=5.2e-13 Score=113.00 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=78.8
Q ss_pred EEEEEeeCcceeeeecCCcccccc------ccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRR------KWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
...+.+++..+.+|||+||..++. .+..|+. +++++++|+|.++. .+. ..++..+..
T Consensus 42 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~---~~~~~~~~~-- 106 (165)
T 2wji_A 42 EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERN---LYLTLQLME-- 106 (165)
T ss_dssp EEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHH---HHHHHHHHH--
T ss_pred EEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHh---HHHHHHHHh--
Confidence 344556678899999999998764 3467775 89999999999985 222 234444433
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
.+.|++|++||+|+..++- ...... .+ .+. .++.+++|||+++.||+++
T Consensus 107 --~~~p~ilv~nK~Dl~~~~~--~~~~~~-----------------~~-~~~---------~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 107 --MGANLLLALNKMDLAKSLG--IEIDVD-----------------KL-EKI---------LGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp --TTCCEEEEEECHHHHHHTT--CCCCHH-----------------HH-HHH---------HTSCEEECBGGGTBSHHHH
T ss_pred --cCCCEEEEEEchHhccccC--hhhHHH-----------------HH-HHH---------hCCCEEEEEcCCCCCHHHH
Confidence 3689999999999865421 110111 11 111 1245889999999999999
Q ss_pred HHHHHHHH
Q psy3651 316 FNAVKNTI 323 (334)
Q Consensus 316 f~~v~~~I 323 (334)
|+++.+.+
T Consensus 156 ~~~l~~~~ 163 (165)
T 2wji_A 156 KKAISIAV 163 (165)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998754
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.35 E-value=3.9e-12 Score=113.48 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=87.4
Q ss_pred ecceeEEEEEeeCcceeeeecCCccc----cc-----ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRS----QR-----RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD 229 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~----~r-----~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~ 229 (334)
|..+....+..++..+.+||++|+.. ++ ..|..++..++++|||+|+++... -...+.+.++.
T Consensus 63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--------~~~~~~~~~~~ 134 (228)
T 2qu8_A 63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG--------LTIKEQINLFY 134 (228)
T ss_dssp --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS--------SCHHHHHHHHH
T ss_pred ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC--------cchHHHHHHHH
Confidence 44455555666778999999999943 22 234556789999999999998621 12344556666
Q ss_pred HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651 230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT 309 (334)
Q Consensus 230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~ 309 (334)
.+... ..+.|++||+||+|+..++- ...... +.+ ..+.. .....+.+++|||+++
T Consensus 135 ~l~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~-------------~~~-----~~~~~---~~~~~~~~~~~SA~~g 189 (228)
T 2qu8_A 135 SIKSV--FSNKSIVIGFNKIDKCNMDS--LSIDNK-------------LLI-----KQILD---NVKNPIKFSSFSTLTG 189 (228)
T ss_dssp HHHTC--C-CCCEEEEEECGGGCC--C--CCHHHH-------------HHH-----HHHHH---HCCSCEEEEECCTTTC
T ss_pred HHHHh--hcCCcEEEEEeCcccCCchh--hHHHHH-------------HHH-----HHHHH---hcCCCceEEEEecccC
Confidence 66542 45789999999999865421 100000 011 11111 1112377899999999
Q ss_pred chHHHHHHHHHHHHHHHh
Q psy3651 310 ENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 310 ~nI~~vf~~v~~~I~~~~ 327 (334)
.||.++|+++.+.+.+..
T Consensus 190 ~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 190 VGVEQAKITACELLKNDQ 207 (228)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 118
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=119.09 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=82.8
Q ss_pred eCcceeeee-----------------------cCCccccccccccccc---------------------CCCeEEEEEeC
Q psy3651 170 SNIPFLFVD-----------------------VGGQRSQRRKWFQCFD---------------------SVTSILFLVSS 205 (334)
Q Consensus 170 ~~~~~~i~D-----------------------vgGq~~~r~kw~~~f~---------------------~v~~iIfv~dl 205 (334)
..+.++||| ++||+.++..|..||. +++++|+|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 457899999 8999999999999998 89999999999
Q ss_pred CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL 285 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~ 285 (334)
++.. ..++.....|+..+.......++|++|++||+|+..++. +. .+.++
T Consensus 173 t~~~--------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~------v~--------------~~~~~-- 222 (255)
T 3c5h_A 173 SRGM--------NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY------IR--------------DAHTF-- 222 (255)
T ss_dssp BC------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH------HH--------------HHHHH--
T ss_pred CCCc--------hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH------HH--------------HHHHH--
Confidence 9830 024555556666665432235789999999999865421 11 11111
Q ss_pred HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
... ...+.+++|||+++.||.++|+++.+.+.
T Consensus 223 ------~~~-~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 223 ------ALS-KKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ------HHT-SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ------HHh-cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 111 12467899999999999999999988653
No 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.29 E-value=3.3e-12 Score=109.07 Aligned_cols=115 Identities=21% Similarity=0.362 Sum_probs=80.2
Q ss_pred eeEEEEEeeCcceeeeecCCcccccc---------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 162 ITEFTIVISNIPFLFVDVGGQRSQRR---------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgGq~~~r~---------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
.....+.+++..+.+||++|++.... .| .++++++++|+|+|+++.. ++. ...++..+.
T Consensus 42 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~~----------s~~-~~~~~~~~~ 109 (172)
T 2gj8_A 42 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTTD----------AVD-PAEIWPEFI 109 (172)
T ss_dssp CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTCC----------CCS-HHHHCHHHH
T ss_pred eeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCCC----------CHH-HHHHHHHHH
Confidence 34455666777899999999975321 22 4689999999999999862 222 235555554
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
+. ...+.|++|++||+|+..+.. .+. ......+++|||+++.||
T Consensus 110 ~~-~~~~~p~ilv~NK~Dl~~~~~-----~~~------------------------------~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 110 AR-LPAKLPITVVRNKADITGETL-----GMS------------------------------EVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HH-SCTTCCEEEEEECHHHHCCCC-----EEE------------------------------EETTEEEEECCTTTCTTH
T ss_pred Hh-cccCCCEEEEEECccCCcchh-----hhh------------------------------hccCCceEEEeCCCCCCH
Confidence 43 235789999999999854321 000 012467899999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTIL 324 (334)
Q Consensus 313 ~~vf~~v~~~I~ 324 (334)
.++|+++.+.+-
T Consensus 154 ~~l~~~l~~~~~ 165 (172)
T 2gj8_A 154 DVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 120
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.27 E-value=8.2e-11 Score=102.05 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=85.3
Q ss_pred EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
..+.+.+ +.+++||++|++.++..|..++++++++++|+|+++. .++.+...|+..+... ...+.|+
T Consensus 69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~i 137 (191)
T 1oix_A 69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH----------LTYENVERWLKELRDH-ADSNIVI 137 (191)
T ss_dssp EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCcE
Confidence 3444544 4567899999999999999999999999999999986 4444444455544332 2356899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
++++||+|+...+- .. .+.+..+.. . ..+.++.|||+|+.++.++|+++.+.
T Consensus 138 ~~v~nK~Dl~~~~~----~~--------------~~~a~~l~~--------~--~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 138 MLVGNKSDLRHLRA----VP--------------TDEARAFAE--------K--NGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEEEECGGGGGGCC----SC--------------HHHHHHHHH--------H--TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECcccccccc----cC--------------HHHHHHHHH--------H--cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999865421 11 122222221 1 23667889999999999999999876
Q ss_pred H
Q psy3651 323 I 323 (334)
Q Consensus 323 I 323 (334)
|
T Consensus 190 i 190 (191)
T 1oix_A 190 I 190 (191)
T ss_dssp H
T ss_pred h
Confidence 5
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.25 E-value=1.5e-11 Score=105.98 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=78.2
Q ss_pred CcceeeeecCC----------cccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 171 NIPFLFVDVGG----------QRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 171 ~~~~~i~DvgG----------q~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
+..+.+||++| ++.++..|..|++++ +++|||+|+++. ....+ ..+++.+..
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~-~~~~~~~~~---- 132 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA----------PSNDD-VQMYEFLKY---- 132 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----------CCHHH-HHHHHHHHH----
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC----------CCHHH-HHHHHHHHH----
Confidence 44899999999 888888899998877 999999999985 22222 222222222
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+..++- +.. ..+-+.+.+ . ....+.+++|||+++.||.++|+
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~------~~~--------------~~~~~~~~~---~--~~~~~~~~~~Sa~~~~gv~~l~~ 187 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGK------WDK--------------HAKVVRQTL---N--IDPEDELILFSSETKKGKDEAWG 187 (195)
T ss_dssp TTCCEEEEEECGGGSCGGG------HHH--------------HHHHHHHHH---T--CCTTSEEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEECcccCChHH------HHH--------------HHHHHHHHH---c--ccCCCceEEEEccCCCCHHHHHH
Confidence 5689999999999865421 110 001122211 1 12457789999999999999999
Q ss_pred HHHHHH
Q psy3651 318 AVKNTI 323 (334)
Q Consensus 318 ~v~~~I 323 (334)
++.+.+
T Consensus 188 ~l~~~l 193 (195)
T 1svi_A 188 AIKKMI 193 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.25 E-value=3.3e-12 Score=109.45 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=82.8
Q ss_pred eEEEEEeeCcceeeeecCCccccc------cccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 163 TEFTIVISNIPFLFVDVGGQRSQR------RKWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 163 ~~~~~~~~~~~~~i~DvgGq~~~r------~kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
....+.+++..+.+||++|+..++ ..|..|+. +++++++|+|.+++ .+. ..++..+..
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~---~~~~~~~~~- 110 (188)
T 2wjg_A 45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERN---LYLTLQLME- 110 (188)
T ss_dssp EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHH---HHHHHHHHT-
T ss_pred eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHH---HHHHHHHHh-
Confidence 344566678899999999999875 45778885 59999999998875 222 334444433
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
.+.|++|++||+|+..++- ......+ + .+. .++.+++|||+++.||.+
T Consensus 111 ---~~~piilv~nK~Dl~~~~~--~~~~~~~-----------------~-~~~---------~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 111 ---MGANLLLALNKMDLAKSLG--IEIDVDK-----------------L-EKI---------LGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp ---TTCCEEEEEECHHHHHHTT--CCCCHHH-----------------H-HHH---------HTSCEEECBGGGTBSHHH
T ss_pred ---cCCCEEEEEEhhhcccccc--chHHHHH-----------------H-HHH---------hCCCeEEEEecCCCCHHH
Confidence 4689999999999866431 1111111 1 111 124689999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy3651 315 VFNAVKNTILHRN 327 (334)
Q Consensus 315 vf~~v~~~I~~~~ 327 (334)
+|+++.+.+.+..
T Consensus 159 l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 159 LKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999998775543
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.23 E-value=2.5e-11 Score=104.13 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=76.9
Q ss_pred eCcceeeeecCC----------cccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 170 SNIPFLFVDVGG----------QRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 170 ~~~~~~i~DvgG----------q~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.+..+.+||++| +..++..|..|++++ +++++|+|.++... ....+...++..
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~--------~~~~~~~~~~~~------ 131 (195)
T 3pqc_A 66 VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ--------DSDLMMVEWMKS------ 131 (195)
T ss_dssp ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--------HHHHHHHHHHHH------
T ss_pred ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC--------HHHHHHHHHHHH------
Confidence 356899999999 777888888888766 99999999887411 111122222222
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
.+.|++|++||+|+..+.- .. ...+.+.+.+.. ...+.+++|||+++.||.++|
T Consensus 132 -~~~p~i~v~nK~Dl~~~~~--~~------------------~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 132 -LNIPFTIVLTKMDKVKMSE--RA------------------KKLEEHRKVFSK-----YGEYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp -TTCCEEEEEECGGGSCGGG--HH------------------HHHHHHHHHHHS-----SCCSCEEECCTTTCTTHHHHH
T ss_pred -cCCCEEEEEEChhcCChHH--HH------------------HHHHHHHHHHhh-----cCCCceEEEecCCCCCHHHHH
Confidence 2689999999999864321 01 001112222111 134678999999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
+++.+.+.+
T Consensus 186 ~~l~~~l~~ 194 (195)
T 3pqc_A 186 DLISTLLKE 194 (195)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999987743
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=5.2e-12 Score=111.25 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=63.9
Q ss_pred eCcceeeeecCCcccccccccccccC----CCeEEEEEeCC-CccchhhcccccccHHHHHHHHHHHHhhc---CCCCCc
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDS----VTSILFLVSSS-EYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVS 241 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~----v~~iIfv~dls-~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~p 241 (334)
.+..+.+||++|++.++..|..|+.+ ++++|||+|++ +. .++.+...++..+.... ...++|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP----------KKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT----------TCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh----------HHHHHHHHHHHHHHhcccccccCCCC
Confidence 56889999999999999999999987 89999999999 65 67777778888877653 236789
Q ss_pred EEEEEeCCCcchh
Q psy3651 242 FILFLNKTDLLAE 254 (334)
Q Consensus 242 iiL~lNK~Dl~~e 254 (334)
++|++||+|+..+
T Consensus 123 ~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 123 ILIACNKSELFTA 135 (218)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEEchHhccc
Confidence 9999999999764
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.19 E-value=6.9e-12 Score=126.32 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+||++||+.++..+..++++++++|+|+|+++. .++..+ ...+... ..+.|++|++||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~---~~~l~~~--~~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYW---LRHIEKY--GGKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHH---HHHHHHH--SSSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHH---HHHHHHh--CCCCCEEEEEECCC
Confidence 57899999999999999999999999999999999875 344333 3333332 24689999999999
Q ss_pred cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
+..++- .....+. +.+. ...+.+++|||+++.||+++|+++.+.+.+
T Consensus 162 l~~~~~-v~~~~~~---------------------~~~~------~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 162 ENPSYN-IEQKKIN---------------------ERFP------AIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TCTTCC-CCHHHHH---------------------HHCG------GGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred cccccc-cCHHHHH---------------------HHHH------hcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 865421 0111111 1111 123458999999999999999999987764
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.19 E-value=5.6e-11 Score=104.78 Aligned_cols=123 Identities=9% Similarity=0.073 Sum_probs=78.2
Q ss_pred eeCcceeeeecCCc----------ccccccccccccC---CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 169 ISNIPFLFVDVGGQ----------RSQRRKWFQCFDS---VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 169 ~~~~~~~i~DvgGq----------~~~r~kw~~~f~~---v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
.++..+.+|||+|. +.++..+..|+.+ ++++|||+|.++. -. .....+++.+..
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~-~~~~~~~~~l~~-- 142 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP----------LT-ELDRRMIEWFAP-- 142 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----------CC-HHHHHHHHHHGG--
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC----------CC-HHHHHHHHHHHh--
Confidence 34689999999994 4446667777766 7779999999874 11 122233333322
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~~ 314 (334)
.+.|++||+||+|+....- +. ...+.+.+.+..... .....+.+++|||+++.||.+
T Consensus 143 --~~~p~i~v~nK~Dl~~~~~------~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 143 --TGKPIHSLLTKCDKLTRQE------SI--------------NALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp --GCCCEEEEEECGGGSCHHH------HH--------------HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHH
T ss_pred --cCCCEEEEEeccccCChhh------HH--------------HHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHH
Confidence 4679999999999865421 10 011122222221100 112457899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 315 VFNAVKNTILHR 326 (334)
Q Consensus 315 vf~~v~~~I~~~ 326 (334)
+|+++.+.+...
T Consensus 201 l~~~l~~~~~~~ 212 (223)
T 4dhe_A 201 AHALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHhcCcc
Confidence 999999877543
No 127
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.17 E-value=9.7e-12 Score=106.40 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=71.8
Q ss_pred ceeeeecCC-----------cccccccccccccC-CCeEEEEEeCCCccchhhcccccccHHHHH-------------HH
Q psy3651 173 PFLFVDVGG-----------QRSQRRKWFQCFDS-VTSILFLVSSSEYDQTLVEDRRTNRLHESR-------------NI 227 (334)
Q Consensus 173 ~~~i~DvgG-----------q~~~r~kw~~~f~~-v~~iIfv~dls~~d~~l~ed~~~nrl~esl-------------~l 227 (334)
.+.+||++| |+.++..|..|+.+ ++++++|+++.+. .++.+.. .+
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~----------~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG----------KAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEET----------THHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcc----------hhhhhHHHhhhccCccHHHHHH
Confidence 789999999 78888889999876 6655555544443 2222221 12
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee
Q psy3651 228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV 307 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~ 307 (334)
+..+.. .+.|++|++||+|+..++- +.+. .+.+.+ +... ......+++|||+
T Consensus 115 ~~~~~~----~~~piilv~nK~Dl~~~~~---------------------~~~~-~~~~~~-~~~~-~~~~~~~~~~Sa~ 166 (190)
T 2cxx_A 115 YQFLRE----LDIPTIVAVNKLDKIKNVQ---------------------EVIN-FLAEKF-EVPL-SEIDKVFIPISAK 166 (190)
T ss_dssp HHHHHH----TTCCEEEEEECGGGCSCHH---------------------HHHH-HHHHHH-TCCG-GGHHHHEEECCTT
T ss_pred HHHHHh----cCCceEEEeehHhccCcHH---------------------HHHH-HHHHHh-hhhh-hccCCcEEEEecC
Confidence 222221 4689999999999865420 0111 111111 1000 0002347899999
Q ss_pred cCchHHHHHHHHHHHHHHHh
Q psy3651 308 DTENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 308 d~~nI~~vf~~v~~~I~~~~ 327 (334)
++.||+++|+++.+.+.+..
T Consensus 167 ~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 167 FGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp TCTTHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHhcchhh
Confidence 99999999999999887643
No 128
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.16 E-value=5.6e-11 Score=108.91 Aligned_cols=119 Identities=14% Similarity=0.088 Sum_probs=84.2
Q ss_pred cceeEEEEEeeCcceeeeecCCcccccccc------cccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 160 KGITEFTIVISNIPFLFVDVGGQRSQRRKW------FQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw------~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
+......+..++..+.+||++|+.+++..| ..|+ .+++++|+|+|.++. .+ .+.++.++
T Consensus 40 v~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~---~~~~~~~l 106 (258)
T 3a1s_A 40 VEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQ---SLYLLLEI 106 (258)
T ss_dssp CEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HH---HHHHHHHH
T ss_pred EEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hh---HHHHHHHH
Confidence 333445566668899999999999988765 5666 589999999999986 22 23455555
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
.. .+.|++|++||+|+..++- ....... +.+. .++.+++|||+++.|
T Consensus 107 ~~----~~~pvilv~NK~Dl~~~~~--i~~~~~~------------------l~~~---------lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 107 LE----MEKKVILAMTAIDEAKKTG--MKIDRYE------------------LQKH---------LGIPVVFTSSVTGEG 153 (258)
T ss_dssp HT----TTCCEEEEEECHHHHHHTT--CCBCHHH------------------HHHH---------HCSCEEECCTTTCTT
T ss_pred Hh----cCCCEEEEEECcCCCCccc--hHHHHHH------------------HHHH---------cCCCEEEEEeeCCcC
Confidence 44 3689999999999866431 1111111 1111 135689999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTIL 324 (334)
Q Consensus 312 I~~vf~~v~~~I~ 324 (334)
|.++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.11 E-value=8e-11 Score=116.31 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=88.2
Q ss_pred EEEEEeeCcceeeeecCC----------cccccccccc-cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGG----------QRSQRRKWFQ-CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgG----------q~~~r~kw~~-~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+..++.++++|||+| |+.++..+.. +++.++++|+|+|.++. -......++..+.
T Consensus 235 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~-----------~~~~~~~~~~~~~ 303 (456)
T 4dcu_A 235 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-----------IIEQDKRIAGYAH 303 (456)
T ss_dssp SEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-----------CCHHHHHHHHHHH
T ss_pred EEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-----------cCHHHHHHHHHHH
Confidence 345666778999999999 6766666654 78999999999999873 1223334444443
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|++|++||+|+..++- ...+.+.+++++.+..+ ..+.+++|||+++.||
T Consensus 304 ~----~~~~~ilv~NK~Dl~~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gv 356 (456)
T 4dcu_A 304 E----AGKAVVIVVNKWDAVDKDE------------------STMKEFEENIRDHFQFL-----DYAPILFMSALTKKRI 356 (456)
T ss_dssp H----TTCEEEEEEECGGGSCCCS------------------SHHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTG
T ss_pred H----cCCCEEEEEEChhcCCCch------------------HHHHHHHHHHHHhcccC-----CCCCEEEEcCCCCcCH
Confidence 3 4689999999999865321 11233444555543222 2356899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy3651 313 KIVFNAVKNTILHRN 327 (334)
Q Consensus 313 ~~vf~~v~~~I~~~~ 327 (334)
.++|+++.+.+.+..
T Consensus 357 ~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 357 HTLMPAIIKASENHS 371 (456)
T ss_dssp GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876543
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.10 E-value=3.4e-11 Score=110.29 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=80.9
Q ss_pred eeEEEEEeeCcceeeeecCCcccccc----------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651 162 ITEFTIVISNIPFLFVDVGGQRSQRR----------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD 229 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgGq~~~r~----------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~ 229 (334)
.....+.+++..+.+||++|+.+.+. .+..|+ ++++++|+|+|.++. .+. +.+..
T Consensus 38 ~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~---~~l~~ 104 (256)
T 3iby_A 38 KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERH---LYLTS 104 (256)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHH---HHHHH
T ss_pred EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhH---HHHHH
Confidence 44556677788999999999998775 566777 899999999999885 222 23333
Q ss_pred HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651 230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT 309 (334)
Q Consensus 230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~ 309 (334)
.+.. .+.|++|++||+|+...+- ....+.. +.+. .++.++.|||+++
T Consensus 105 ~l~~----~~~pvilv~NK~Dl~~~~~--~~~~~~~------------------l~~~---------lg~~vi~~SA~~g 151 (256)
T 3iby_A 105 QLFE----LGKPVVVALNMMDIAEHRG--ISIDTEK------------------LESL---------LGCSVIPIQAHKN 151 (256)
T ss_dssp HHTT----SCSCEEEEEECHHHHHHTT--CEECHHH------------------HHHH---------HCSCEEECBGGGT
T ss_pred HHHH----cCCCEEEEEEChhcCCcCC--cHHHHHH------------------HHHH---------cCCCEEEEECCCC
Confidence 3322 3689999999999876532 1111111 1111 1356899999999
Q ss_pred chHHHHHHHHHHH
Q psy3651 310 ENIKIVFNAVKNT 322 (334)
Q Consensus 310 ~nI~~vf~~v~~~ 322 (334)
.||.++|+++.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 131
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.08 E-value=6.8e-11 Score=109.14 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=79.5
Q ss_pred eeEEEEEeeCcceeeeecCCcccccc----------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651 162 ITEFTIVISNIPFLFVDVGGQRSQRR----------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD 229 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgGq~~~r~----------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~ 229 (334)
.....+...+..+.+||++|+..++. .|..|+ ++++++|+|+|.++. .+.. .+..
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~---~~~~ 106 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNL---YLTL 106 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHH---HHHH
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHH---HHHH
Confidence 34455666788999999999998773 344554 799999999999885 3332 3333
Q ss_pred HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651 230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT 309 (334)
Q Consensus 230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~ 309 (334)
.+... +.|+++++||+|+..++- ....+.. +.+. .++.++.|||+++
T Consensus 107 ~l~~~----~~p~ivv~NK~Dl~~~~~--~~~~~~~------------------l~~~---------lg~~~i~~SA~~g 153 (274)
T 3i8s_A 107 QLLEL----GIPCIVALNMLDIAEKQN--IRIEIDA------------------LSAR---------LGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHH----TCCEEEEEECHHHHHHTT--EEECHHH------------------HHHH---------HTSCEEECCCGGG
T ss_pred HHHhc----CCCEEEEEECccchhhhh--HHHHHHH------------------HHHh---------cCCCEEEEEcCCC
Confidence 33332 689999999999876532 1111111 1111 1356899999999
Q ss_pred chHHHHHHHHHHHH
Q psy3651 310 ENIKIVFNAVKNTI 323 (334)
Q Consensus 310 ~nI~~vf~~v~~~I 323 (334)
.||.++|+++.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987654
No 132
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.08 E-value=3.8e-10 Score=105.89 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=80.3
Q ss_pred EEEEEee-CcceeeeecCCccccc----------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVIS-NIPFLFVDVGGQRSQR----------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~-~~~~~i~DvgGq~~~r----------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+..+ +..+.+|||+|+...+ ..+..++.++|++|||+|.++. ....+...|++.+.
T Consensus 50 ~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~----------~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 50 LGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG----------WRPRDEEIYQNFIK 119 (308)
T ss_dssp EEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTB----------SCHHHHHHHHHHTG
T ss_pred EEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCC----------CCchhHHHHHHHHH
Confidence 3344556 7889999999997655 6678889999999999999985 33333222233333
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|++|++||+|+...+- .. .. ..+.+.+.+ .....++.+||+++.||
T Consensus 120 ~----~~~pvilV~NK~Dl~~~~~--~~---~~--------------~~~~l~~~~-------~~~~~i~~vSA~~g~gv 169 (308)
T 3iev_A 120 P----LNKPVIVVINKIDKIGPAK--NV---LP--------------LIDEIHKKH-------PELTEIVPISALKGANL 169 (308)
T ss_dssp G----GCCCEEEEEECGGGSSSGG--GG---HH--------------HHHHHHHHC-------TTCCCEEECBTTTTBSH
T ss_pred h----cCCCEEEEEECccCCCCHH--HH---HH--------------HHHHHHHhc-------cCCCeEEEEeCCCCCCH
Confidence 2 4689999999999862211 11 10 011111111 12245889999999999
Q ss_pred HHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTI 323 (334)
Q Consensus 313 ~~vf~~v~~~I 323 (334)
.++|+++.+.+
T Consensus 170 ~~L~~~l~~~l 180 (308)
T 3iev_A 170 DELVKTILKYL 180 (308)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99999988755
No 133
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.07 E-value=5.6e-11 Score=109.90 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=76.6
Q ss_pred CcceeeeecCCccccc------cccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651 171 NIPFLFVDVGGQRSQR------RKWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF 242 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r------~kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi 242 (334)
+..+.+||++|+.+++ ..+..|+. +++++|+|+|.++. .+ .+.+..++.. .+.|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~---~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ER---NLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HH---HHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------Hh---HHHHHHHHHh----cCCCE
Confidence 7889999999999887 46677876 69999999999885 22 2344445543 46899
Q ss_pred EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+|++||+|+..++- ....... +.+. .++.++.|||+++.||.++|+++.+.
T Consensus 111 ilv~NK~Dl~~~~~--~~~~~~~------------------l~~~---------lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 111 TIALNMIDVLDGQG--KKINVDK------------------LSYH---------LGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EEEEECHHHHHHTT--CCCCHHH------------------HHHH---------HTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred EEEEEChhhCCcCC--cHHHHHH------------------HHHH---------cCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 99999999866431 1111111 1111 13568999999999999999999775
Q ss_pred H
Q psy3651 323 I 323 (334)
Q Consensus 323 I 323 (334)
+
T Consensus 162 ~ 162 (272)
T 3b1v_A 162 T 162 (272)
T ss_dssp C
T ss_pred H
Confidence 4
No 134
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.03 E-value=2.9e-10 Score=104.36 Aligned_cols=119 Identities=20% Similarity=0.082 Sum_probs=86.1
Q ss_pred eeEEEEEeeCcceeeeecCCcccccc------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 162 ITEFTIVISNIPFLFVDVGGQRSQRR------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 162 i~~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
.....+..++..+.+||++|+..+.. .+..|+ .+++++|+|+|.++. ...+.++.++..
T Consensus 40 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~-------------~~~~~~~~~~~~ 106 (271)
T 3k53_A 40 KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL-------------MRNLFLTLELFE 106 (271)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHH
T ss_pred eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc-------------hhhHHHHHHHHh
Confidence 34556667788899999999998877 688887 789999999999884 234555666554
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
. ...|+++++||+|+..++- ...... -+.++ .++.++.|||+++.||.
T Consensus 107 ~---~~~p~ilv~NK~Dl~~~~~--~~~~~~------------------~l~~~---------lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 107 M---EVKNIILVLNKFDLLKKKG--AKIDIK------------------KMRKE---------LGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp T---TCCSEEEEEECHHHHHHHT--CCCCHH------------------HHHHH---------HSSCEEECBGGGTBTHH
T ss_pred c---CCCCEEEEEEChhcCcccc--cHHHHH------------------HHHHH---------cCCcEEEEEeCCCCCHH
Confidence 2 2389999999999876432 111111 11111 13568899999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 314 IVFNAVKNTILH 325 (334)
Q Consensus 314 ~vf~~v~~~I~~ 325 (334)
++|+++.+.+.+
T Consensus 155 ~l~~~i~~~~~~ 166 (271)
T 3k53_A 155 ELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.03 E-value=2.1e-10 Score=112.73 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=85.0
Q ss_pred EEEEEeeCcceeeeecCCcccc----------ccccc-ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQ----------RRKWF-QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~----------r~kw~-~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
...+..++..+.+|||+|++.. +..+. .+++.++++|+|+|+++. ... +.+.++..+.
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~----------~s~-~~~~~~~~~~ 283 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG----------IIE-QDKRIAGYAH 283 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC----------CCH-HHHHHHHHHH
T ss_pred EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcC----------CcH-HHHHHHHHHH
Confidence 4456677888999999999542 22333 478899999999999985 222 3345555554
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
. .+.|++|++||+|+..++- . ..+...+.+.+.+..+ ..+.+++|||++|.||
T Consensus 284 ~----~~~~iiiv~NK~Dl~~~~~----~--------------~~~~~~~~~~~~l~~~-----~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 284 E----AGKAVVIVVNKWDAVDKDE----S--------------TMKEFEENIRDHFQFL-----DYAPILFMSALTKKRI 336 (436)
T ss_dssp H----TTCEEEEEEECGGGSCCCT----T--------------HHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTG
T ss_pred H----cCCcEEEEEECccCCCcch----H--------------HHHHHHHHHHHhcccC-----CCCCEEEEecccCCCH
Confidence 3 4689999999999865321 0 1112222333333221 2456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTILHR 326 (334)
Q Consensus 313 ~~vf~~v~~~I~~~ 326 (334)
.++|+.+.+.+.+.
T Consensus 337 ~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 337 HTLMPAIIKASENH 350 (436)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 136
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.3e-10 Score=98.43 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=63.4
Q ss_pred eCcceeeeecCCcccccccccccccC----CCeEEEEEeCC-CccchhhcccccccHHHHHHHHHHHHhhc---CCCCCc
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDS----VTSILFLVSSS-EYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVS 241 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~----v~~iIfv~dls-~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~p 241 (334)
.+..+.+||++|+..++..|..++.+ ++++|||+|++ +. .++.+...++..++... ...+.|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP----------KKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH----------HHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc----------hhHHHHHHHHHHHHhhhhhccccCCC
Confidence 67899999999999999999999987 89999999999 65 67777777887777643 235789
Q ss_pred EEEEEeCCCcchh
Q psy3651 242 FILFLNKTDLLAE 254 (334)
Q Consensus 242 iiL~lNK~Dl~~e 254 (334)
++|++||+|+..+
T Consensus 159 ~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 159 ILIACNKSELFTA 171 (193)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEEchHhcCC
Confidence 9999999998764
No 137
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.99 E-value=2.1e-10 Score=115.47 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=83.5
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
++.++.+|||+|++.+...|..++..++++|+|+|.++- .+.+....+..+.. .+.|++|++||+
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg-----------~~~qt~e~l~~~~~----~~vPiIVViNKi 114 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG-----------VMKQTVESIQHAKD----AHVPIVLAINKC 114 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC-----------CCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence 456899999999999999999999999999999999983 44555555555443 467999999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+...........+..+ ..........+.++++||+++.||.++|+++...+
T Consensus 115 Dl~~~~~~~v~~~l~~~----------------------~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 115 DKAEADPEKVKKELLAY----------------------DVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp GGTTTSCCSSSSHHHHT----------------------TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHhh----------------------hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 98654220001111111 00000111346789999999999999999988754
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.99 E-value=8.4e-10 Score=109.87 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=80.7
Q ss_pred ceeEEEEEeeCcceeeeecCCcc-ccc--------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 161 GITEFTIVISNIPFLFVDVGGQR-SQR--------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 161 Gi~~~~~~~~~~~~~i~DvgGq~-~~r--------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
.+....+.+++..+.+|||+|++ ... +.+..+++.++++|+|+|+++. .... ..++++.+
T Consensus 280 d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~----------~s~~-~~~il~~l 348 (482)
T 1xzp_A 280 DVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP----------LDEE-DRKILERI 348 (482)
T ss_dssp CSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC----------CCHH-HHHHHHHH
T ss_pred eeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC----------CCHH-HHHHHHHh
Confidence 34455667778899999999998 433 2345688999999999999986 2222 23344332
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
.+.|+++++||+|+..+ + ....+.+ + . ...+.+++|||++++|
T Consensus 349 ------~~~piivV~NK~DL~~~-~--~~~~~~~-----------------~-----~------~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 349 ------KNKRYLVVINKVDVVEK-I--NEEEIKN-----------------K-----L------GTDRHMVKISALKGEG 391 (482)
T ss_dssp ------TTSSEEEEEEECSSCCC-C--CHHHHHH-----------------H-----H------TCSTTEEEEEGGGTCC
T ss_pred ------cCCCEEEEEECcccccc-c--CHHHHHH-----------------H-----h------cCCCcEEEEECCCCCC
Confidence 36799999999998542 2 1111111 1 1 1124578999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTILH 325 (334)
Q Consensus 312 I~~vf~~v~~~I~~ 325 (334)
|+++|+++.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997663
No 139
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.98 E-value=1.3e-09 Score=108.26 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=73.4
Q ss_pred ceeEEEEEeeCcceeeeecCCcccccccc--------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651 161 GITEFTIVISNIPFLFVDVGGQRSQRRKW--------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII 232 (334)
Q Consensus 161 Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw--------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~ 232 (334)
.+....+.+++..+.+|||+|++..+..| ..++++++++|+|+|.++.... ..+.+...+++.+
T Consensus 270 d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-------~~~~~~~~~l~~l- 341 (476)
T 3gee_A 270 DYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-------DELTEIRELKAAH- 341 (476)
T ss_dssp ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSG-------GGHHHHHHHHHHC-
T ss_pred EEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-------hhhHHHHHHHHhc-
Confidence 34455677788999999999998866443 5578999999999999986221 1223444444332
Q ss_pred hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
.+.|+++|+||+|+..... .... -+ .... ...++.|||+++.||
T Consensus 342 -----~~~piIvV~NK~Dl~~~~~----~~~~------------------~l----~~~~-----~~~~i~vSAktg~GI 385 (476)
T 3gee_A 342 -----PAAKFLTVANKLDRAANAD----ALIR------------------AI----ADGT-----GTEVIGISALNGDGI 385 (476)
T ss_dssp -----TTSEEEEEEECTTSCTTTH----HHHH------------------HH----HHHH-----TSCEEECBTTTTBSH
T ss_pred -----CCCCEEEEEECcCCCCccc----hhHH------------------HH----HhcC-----CCceEEEEECCCCCH
Confidence 3689999999999865421 0000 01 1110 134789999999999
Q ss_pred HHHHHHHHHHHH
Q psy3651 313 KIVFNAVKNTIL 324 (334)
Q Consensus 313 ~~vf~~v~~~I~ 324 (334)
.++|+++.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 140
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.97 E-value=2.1e-09 Score=108.16 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=66.0
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
.|+......+..++..+.+|||+|+..++..|..+++.++++|+|+|.++. ...+...+|..+..
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-----------~~~~t~~~~~~~~~---- 132 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-----------VEPRTIKLMEVCRL---- 132 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHHHT----
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-----------CCHHHHHHHHHHHH----
Confidence 355555667778889999999999999999999999999999999999984 33455566665543
Q ss_pred CCCcEEEEEeCCCcch
Q psy3651 238 RNVSFILFLNKTDLLA 253 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~ 253 (334)
.+.|+++|+||+|+..
T Consensus 133 ~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 133 RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEeCCCCcc
Confidence 4689999999999864
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.97 E-value=9e-10 Score=108.25 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred EEEEEeeCcceeeeecCCccc---------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 164 EFTIVISNIPFLFVDVGGQRS---------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~---------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
...+.+.+..+.+|||||+.. .++.|..+++++++||||+|.++.- ....+ .+..++..
T Consensus 41 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~---------~~~d~---~i~~~l~~ 108 (439)
T 1mky_A 41 QDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI---------TKEDE---SLADFLRK 108 (439)
T ss_dssp EEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC---------CHHHH---HHHHHHHH
T ss_pred eEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHH---HHHHHHHH
Confidence 455666788899999999874 3567888999999999999987631 11111 12222222
Q ss_pred cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
.+.|++|++||+|+... . .... ...|..+. - -.++.+||++|.||.+
T Consensus 109 ---~~~p~ilv~NK~D~~~~-~---~~~~---------------------~~~~~~lg---~--~~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 109 ---STVDTILVANKAENLRE-F---EREV---------------------KPELYSLG---F--GEPIPVSAEHNINLDT 155 (439)
T ss_dssp ---HTCCEEEEEESCCSHHH-H---HHHT---------------------HHHHGGGS---S--CSCEECBTTTTBSHHH
T ss_pred ---cCCCEEEEEeCCCCccc-c---HHHH---------------------HHHHHhcC---C--CCEEEEeccCCCCHHH
Confidence 35799999999998543 1 0011 00111111 0 1367899999999999
Q ss_pred HHHHHHHHHHH
Q psy3651 315 VFNAVKNTILH 325 (334)
Q Consensus 315 vf~~v~~~I~~ 325 (334)
+|+++.+.+..
T Consensus 156 L~~~i~~~l~~ 166 (439)
T 1mky_A 156 MLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99999988764
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.95 E-value=2.3e-09 Score=105.47 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=84.5
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+.+....+...+..+.+|||+|++.+.+.+..+++.+|++|+|+|.++-.. |. ..+...+....+..+..
T Consensus 79 ~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~-- 152 (439)
T 3j2k_7 79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT-- 152 (439)
T ss_pred cCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH--
Confidence 3456666666777788999999999999999999999999999999999987411 00 00001122222222221
Q ss_pred CCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 236 IFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 236 ~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
.+.| ++|++||+|+..... ....+ +...+-+...+..+.......+.++.+||++|.||.+
T Consensus 153 --~~v~~iIvviNK~Dl~~~~~--~~~~~--------------~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 153 --AGVKHLIVLINKMDDPTVNW--SNERY--------------EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred --cCCCeEEEEeecCCCcccch--HHHHH--------------HHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence 3456 999999999853211 00000 1111112222222222212357899999999999998
Q ss_pred HHH
Q psy3651 315 VFN 317 (334)
Q Consensus 315 vf~ 317 (334)
+++
T Consensus 215 l~~ 217 (439)
T 3j2k_7 215 QSD 217 (439)
T ss_pred ccc
Confidence 654
No 143
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.95 E-value=6.9e-10 Score=105.85 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=81.8
Q ss_pred EEEeeC-cceeeeecCCccc----cccccccccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cC
Q psy3651 166 TIVISN-IPFLFVDVGGQRS----QRRKWFQCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VI 236 (334)
Q Consensus 166 ~~~~~~-~~~~i~DvgGq~~----~r~kw~~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~ 236 (334)
.+.+.+ ..+.+||++|+.. .+..+..|++ .++++|+|+|+++.+. .+.+.+...+..++... +.
T Consensus 199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~-------~~~~~~~~~~~~eL~~~~~~ 271 (342)
T 1lnz_A 199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEG-------RDPYDDYLTINQELSEYNLR 271 (342)
T ss_dssp EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSC-------CCHHHHHHHHHHHHHHSCSS
T ss_pred EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccc-------cChHHHHHHHHHHHHHhhhh
Confidence 355554 7899999999643 3445555654 5999999999998310 04455555555665543 23
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
..+.|++|++||+|+..++- ....+ .+. + ...+.++.+||++++||+++|
T Consensus 272 l~~~p~ilV~NK~Dl~~~~e--~~~~l---------------------~~~---l----~~~~~v~~iSA~tg~gi~eL~ 321 (342)
T 1lnz_A 272 LTERPQIIVANKMDMPEAAE--NLEAF---------------------KEK---L----TDDYPVFPISAVTREGLRELL 321 (342)
T ss_dssp TTTSCBCBEEECTTSTTHHH--HHHHH---------------------HHH---C----CSCCCBCCCSSCCSSTTHHHH
T ss_pred hcCCCEEEEEECccCCCCHH--HHHHH---------------------HHH---h----hcCCCEEEEECCCCcCHHHHH
Confidence 46789999999999865421 01111 111 1 111457899999999999999
Q ss_pred HHHHHHHHH
Q psy3651 317 NAVKNTILH 325 (334)
Q Consensus 317 ~~v~~~I~~ 325 (334)
.++.+.+.+
T Consensus 322 ~~l~~~l~~ 330 (342)
T 1lnz_A 322 FEVANQLEN 330 (342)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhh
Confidence 999987754
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.95 E-value=7.5e-09 Score=98.91 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=86.4
Q ss_pred ecceeEEEEEeeCcceeeeecCCccccc---------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQR---------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD 229 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r---------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~ 229 (334)
|.++....+..++..+.+|||+|+.... .....+...++++|+|+|+++... -.+.+...++.
T Consensus 201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~--------~~~~~~~~~~~ 272 (357)
T 2e87_A 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCG--------FPLEEQIHLFE 272 (357)
T ss_dssp SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTS--------SCHHHHHHHHH
T ss_pred eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCcccc--------CCHHHHHHHHH
Confidence 4444445555567889999999996532 112234557999999999988510 15566677777
Q ss_pred HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651 230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT 309 (334)
Q Consensus 230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~ 309 (334)
.+.... .+.|+++++||+|+....- + +.+.+++. ...+.++++||++|
T Consensus 273 ~i~~~~--~~~piilV~NK~Dl~~~~~------~--------------~~~~~~~~----------~~~~~~~~iSA~~g 320 (357)
T 2e87_A 273 EVHGEF--KDLPFLVVINKIDVADEEN------I--------------KRLEKFVK----------EKGLNPIKISALKG 320 (357)
T ss_dssp HHHHHT--TTSCEEEEECCTTTCCHHH------H--------------HHHHHHHH----------HTTCCCEECBTTTT
T ss_pred HHHHhc--CCCCEEEEEECcccCChHH------H--------------HHHHHHHH----------hcCCCeEEEeCCCC
Confidence 776532 3789999999999865421 1 11111211 12355789999999
Q ss_pred chHHHHHHHHHHHHHHH
Q psy3651 310 ENIKIVFNAVKNTILHR 326 (334)
Q Consensus 310 ~nI~~vf~~v~~~I~~~ 326 (334)
+||.++|+++.+.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 145
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.94 E-value=6.8e-10 Score=108.81 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=81.5
Q ss_pred ecceeEEEEEeeCc-ceeeeecCCccccccc-------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 159 TKGITEFTIVISNI-PFLFVDVGGQRSQRRK-------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 159 T~Gi~~~~~~~~~~-~~~i~DvgGq~~~r~k-------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
|+......+.+.+. ++.+|||+|+..+... +..++.+++++|+|+|.+.. ....+. +..
T Consensus 69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~----------~~~~~~---l~~ 135 (423)
T 3qq5_A 69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT----------PYEDDV---VNL 135 (423)
T ss_dssp -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC----------HHHHHH---HHH
T ss_pred eeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh----------HHHHHH---HHH
Confidence 34444555666555 8999999999877654 45689999999999998332 222333 333
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
+.. .+.|+++|+||+|+..+.. . ...+ .+ .....+.++++||+++.
T Consensus 136 l~~----~~~piIvV~NK~Dl~~~~~--~--~~~~------------------------~l--~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 136 FKE----MEIPFVVVVNKIDVLGEKA--E--ELKG------------------------LY--ESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHH----TTCCEEEECCCCTTTTCCC--T--HHHH------------------------HS--SCCTTCCCCCCSSCCTT
T ss_pred HHh----cCCCEEEEEeCcCCCCccH--H--HHHH------------------------HH--HHHcCCCEEEEECCCCC
Confidence 333 2689999999999876532 1 1111 11 11234678899999999
Q ss_pred hHHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTIL 324 (334)
Q Consensus 311 nI~~vf~~v~~~I~ 324 (334)
||+++|+++.+.+.
T Consensus 182 gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 182 GFDDIGKTISEILP 195 (423)
T ss_dssp STTTHHHHHHHHSC
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999998773
No 146
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.94 E-value=4.9e-09 Score=98.13 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=74.9
Q ss_pred EEeeCcceeeeecCCcccc--------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 167 IVISNIPFLFVDVGGQRSQ--------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~~~--------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
+..++..+.+|||+|+... ...+..++++++++|||+|.++.. ... ...+++.+ ... ..
T Consensus 50 ~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~----------~~~-~~~i~~~l-~~~-~~ 116 (301)
T 1wf3_A 50 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP----------TPE-DELVARAL-KPL-VG 116 (301)
T ss_dssp EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC----------CHH-HHHHHHHH-GGG-TT
T ss_pred EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC----------ChH-HHHHHHHH-Hhh-cC
Confidence 3446788999999999873 445667889999999999998751 111 11222333 221 24
Q ss_pred CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318 (334)
Q Consensus 239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~ 318 (334)
+.|++||+||+|+..+.- . +.+ .+. .+ .....++.+||+++.|+.++|++
T Consensus 117 ~~p~ilV~NK~Dl~~~~~--~---~~~-----------------~~~----~~----~~~~~~~~iSA~~g~gv~~l~~~ 166 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPE--E---AMK-----------------AYH----EL----LPEAEPRMLSALDERQVAELKAD 166 (301)
T ss_dssp TSCEEEEEECGGGCSSHH--H---HHH-----------------HHH----HT----STTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCchH--H---HHH-----------------HHH----Hh----cCcCcEEEEeCCCCCCHHHHHHH
Confidence 789999999999864311 0 111 111 11 11235789999999999999998
Q ss_pred HHHHH
Q psy3651 319 VKNTI 323 (334)
Q Consensus 319 v~~~I 323 (334)
+.+.+
T Consensus 167 l~~~l 171 (301)
T 1wf3_A 167 LLALM 171 (301)
T ss_dssp HHTTC
T ss_pred HHHhc
Confidence 87643
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.92 E-value=2.6e-09 Score=106.33 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=85.2
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..|+.+....+.+++..+.+||++|++.+.+.+..++..+|++|+|+|.++- .+.++.+.+..+ ..
T Consensus 58 GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~-~~-- 123 (482)
T 1wb1_A 58 GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLIL-DH-- 123 (482)
T ss_dssp ------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHH-HH--
T ss_pred ccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-----------ccHHHHHHHHHH-HH--
Confidence 3455555556777788999999999999999999999999999999999873 222333333222 21
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
.+.|+++++||+|+..+.. ...+ .+.+.+++.. .. .-..+.++.+||+++.||.+++
T Consensus 124 -~~ip~IvviNK~Dl~~~~~---~~~~-------------~~~l~~~l~~----~~--~~~~~~ii~vSA~~g~gI~~L~ 180 (482)
T 1wb1_A 124 -FNIPIIVVITKSDNAGTEE---IKRT-------------EMIMKSILQS----TH--NLKNSSIIPISAKTGFGVDELK 180 (482)
T ss_dssp -TTCCBCEEEECTTSSCHHH---HHHH-------------HHHHHHHHHH----SS--SGGGCCEEECCTTTCTTHHHHH
T ss_pred -cCCCEEEEEECCCcccchh---HHHH-------------HHHHHHHHhh----hc--ccccceEEEEECcCCCCHHHHH
Confidence 3578899999999865321 0000 1111122221 10 0013568899999999999999
Q ss_pred HHHHHHHH
Q psy3651 317 NAVKNTIL 324 (334)
Q Consensus 317 ~~v~~~I~ 324 (334)
+++.+.+-
T Consensus 181 ~~L~~~i~ 188 (482)
T 1wb1_A 181 NLIITTLN 188 (482)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99988764
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.91 E-value=8.2e-10 Score=108.45 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=72.5
Q ss_pred EEEEeeCcceeeeecCCcc--------cccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 165 FTIVISNIPFLFVDVGGQR--------SQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 165 ~~~~~~~~~~~i~DvgGq~--------~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..+.+++..+.+|||||+. ..+..|..++++++++|||+|.++. .... -.++..++..
T Consensus 44 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~----------~~~~--d~~~~~~l~~-- 109 (436)
T 2hjg_A 44 SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG----------VTAA--DEEVAKILYR-- 109 (436)
T ss_dssp EECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC----------SCHH--HHHHHHHHTT--
T ss_pred EEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC----------CCHH--HHHHHHHHHH--
Confidence 3445567899999999996 5678889999999999999999874 1111 1223333332
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
.+.|++|++||+|+..... .+.++ .++. . -.++.+||++|.|+.++|
T Consensus 110 -~~~pvilv~NK~D~~~~~~-----~~~~~----------------------~~lg----~-~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 110 -TKKPVVLAVNKLDNTEMRA-----NIYDF----------------------YSLG----F-GEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp -CCSCEEEEEECCCC----------CCCSS----------------------GGGS----S-CCCEECBTTTTBTHHHHH
T ss_pred -cCCCEEEEEECccCccchh-----hHHHH----------------------HHcC----C-CCeEEEeCcCCCChHHHH
Confidence 5689999999999865421 11111 1110 0 136889999999999999
Q ss_pred HHHHHHHH
Q psy3651 317 NAVKNTIL 324 (334)
Q Consensus 317 ~~v~~~I~ 324 (334)
+++.+.+.
T Consensus 157 ~~i~~~l~ 164 (436)
T 2hjg_A 157 DAVAEHFK 164 (436)
T ss_dssp HHHHHTGG
T ss_pred HHHHHhcC
Confidence 99987664
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.90 E-value=4.6e-09 Score=101.90 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=85.9
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..|+++....+..++..+.+||++|++.+.+.+..++..+|++|+|+|.++- .+.+..+.+..+..
T Consensus 51 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~~--- 116 (397)
T 1d2e_A 51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLARQ--- 116 (397)
T ss_dssp TEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---
T ss_pred CcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHHHH---
Confidence 3466655556666778999999999999999999999999999999999984 23344444433322
Q ss_pred CCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch----
Q psy3651 237 FRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN---- 311 (334)
Q Consensus 237 ~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n---- 311 (334)
.+.| +++++||+|+.... .. +.. ..+++.+++. ... .....+.++.+||+++.|
T Consensus 117 -~~vp~iivviNK~Dl~~~~---~~--~~~----------~~~~~~~~l~----~~~-~~~~~~~~i~~SA~~g~n~~~~ 175 (397)
T 1d2e_A 117 -IGVEHVVVYVNKADAVQDS---EM--VEL----------VELEIRELLT----EFG-YKGEETPIIVGSALCALEQRDP 175 (397)
T ss_dssp -TTCCCEEEEEECGGGCSCH---HH--HHH----------HHHHHHHHHH----HTT-SCTTTSCEEECCHHHHHTTCCT
T ss_pred -cCCCeEEEEEECcccCCCH---HH--HHH----------HHHHHHHHHH----HcC-CCcccCcEEEeehhhcccccCC
Confidence 3577 78999999986311 00 000 0011222221 111 112346789999999764
Q ss_pred ------HHHHHHHHHHHH
Q psy3651 312 ------IKIVFNAVKNTI 323 (334)
Q Consensus 312 ------I~~vf~~v~~~I 323 (334)
|.++++.+.+.+
T Consensus 176 ~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 176 ELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTTHHHHHHHHHHHHHHS
T ss_pred CccCCcHHHHHHHHHHhC
Confidence 788888776644
No 150
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.89 E-value=7.5e-10 Score=110.59 Aligned_cols=119 Identities=10% Similarity=0.097 Sum_probs=79.4
Q ss_pred EEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy3651 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILF 245 (334)
Q Consensus 166 ~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~ 245 (334)
.+..++..+.+|||+|++.+...|..++..+|++|+|+|.++- .+.++...+..... .+.|++++
T Consensus 45 ~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-----------~~~qT~e~l~~~~~----~~vPiIVv 109 (501)
T 1zo1_I 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-----------VMPQTIEAIQHAKA----AQVPVVVA 109 (501)
T ss_dssp CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-----------SCTTTHHHHHHHHH----TTCCEEEE
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-----------ccHHHHHHHHHHHh----cCceEEEE
Confidence 3445677899999999999999999999999999999998873 11222222322222 46799999
Q ss_pred EeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 246 LNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 246 lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
+||+|+..... ..+...+.++.-. ...-...+.++++||+++.||.++|+++..
T Consensus 110 iNKiDl~~~~~----~~v~~~l~~~~~~------------------~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 110 VNKIDKPEADP----DRVKNELSQYGIL------------------PEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECSSSSTTCC----CCTTCCCCCCCCC------------------TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred EEeccccccCH----HHHHHHHHHhhhh------------------HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 99999965321 1111111110000 000012467999999999999999998764
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.88 E-value=6.5e-09 Score=100.98 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=60.6
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+......+...+..+.+||++|++.+.+.+..++..+|++|+|+|.++- .+.+...++..+.. .
T Consensus 62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~~~l~~~~~----~ 126 (405)
T 2c78_A 62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ----V 126 (405)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHHHHHH----T
T ss_pred CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----c
Confidence 34444445566678999999999999999999999999999999999884 23344455544332 3
Q ss_pred CCc-EEEEEeCCCcch
Q psy3651 239 NVS-FILFLNKTDLLA 253 (334)
Q Consensus 239 ~~p-iiL~lNK~Dl~~ 253 (334)
+.| +++++||+|+..
T Consensus 127 ~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 127 GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp TCCCEEEEEECGGGCC
T ss_pred CCCEEEEEEECccccC
Confidence 567 899999999863
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.88 E-value=6.3e-09 Score=100.19 Aligned_cols=129 Identities=8% Similarity=0.024 Sum_probs=90.1
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.+..|+++....++.++..+.+|||+|++.+.+.....++.+|++|+|+| ++ ..+.+..+++..+..
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~- 109 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL- 109 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH-
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH-
Confidence 45677777777888888999999999999998888889999999999999 54 344444444443322
Q ss_pred cCCCCCcE-EEEEe-CCCcchhh-hccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE--Eeeec-
Q psy3651 235 VIFRNVSF-ILFLN-KTDLLAEK-LRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF--TTAVD- 308 (334)
Q Consensus 235 ~~~~~~pi-iL~lN-K~Dl~~ek-i~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~--tsA~d- 308 (334)
.+.|. ++++| |+|+ .+. +......+.+++ .. .....+.++. +||++
T Consensus 110 ---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l---------------------~~---~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 110 ---LGFKHGIIALTRSDST-HMHAIDELKAKLKVIT---------------------SG---TVLQDWECISLNTNKSAK 161 (370)
T ss_dssp ---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT---------------------TT---STTTTCEEEECCCCTTSS
T ss_pred ---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH---------------------Hh---cCCCceEEEecccccccC
Confidence 34666 89999 9999 432 100001122211 11 1113477899 99999
Q ss_pred --CchHHHHHHHHHHHHH
Q psy3651 309 --TENIKIVFNAVKNTIL 324 (334)
Q Consensus 309 --~~nI~~vf~~v~~~I~ 324 (334)
++||.++++.+.+.+-
T Consensus 162 ~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 162 NPFEGVDELKARINEVAE 179 (370)
T ss_dssp STTTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhcc
Confidence 9999999999887654
No 153
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.88 E-value=3.6e-09 Score=102.81 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=81.1
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.+.+.+..++..+|++|+|+|.++. ..+.+...++..+... ...|+++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~----------~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP----------FPQPQTREHFVALGII---GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSC----------SSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC----------CCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence 6789999999999999999999999999999999985 2344444444433221 22589999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
....- ... ..+.+.+.+.. .....+.++.+||+++.||.++|+++.+.+
T Consensus 142 ~~~~~------~~~--------------~~~~i~~~l~~---~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 142 VSKEE------ALS--------------QYRQIKQFTKG---TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp SCHHH------HHH--------------HHHHHHHHHTT---STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred cchHH------HHH--------------HHHHHHHHHHh---hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 65421 000 11112221111 112356799999999999999999998755
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.87 E-value=2.8e-09 Score=108.71 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=83.2
Q ss_pred eeeecceeEEEEEee-----CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651 156 RKATKGITEFTIVIS-----NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~-----~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~ 230 (334)
+..|+......+.+. +..+.+|||+|+..+...|..++..++++|+|+|.++-. . .++...|..
T Consensus 50 rGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv----------~-~qt~~~~~~ 118 (599)
T 3cb4_D 50 RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV----------E-AQTLANCYT 118 (599)
T ss_dssp -------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC----------C-THHHHHHHH
T ss_pred ccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC----------C-HHHHHHHHH
Confidence 333444444455554 378999999999999999999999999999999999852 1 233444444
Q ss_pred HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE 310 (334)
Q Consensus 231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~ 310 (334)
... .+.|+++|+||+|+..... +.+.+-+.+.+ ++ ....++.+||+++.
T Consensus 119 ~~~----~~ipiIvViNKiDl~~a~~---------------------~~v~~ei~~~l-g~-----~~~~vi~vSAktg~ 167 (599)
T 3cb4_D 119 AME----MDLEVVPVLNKIDLPAADP---------------------ERVAEEIEDIV-GI-----DATDAVRCSAKTGV 167 (599)
T ss_dssp HHH----TTCEEEEEEECTTSTTCCH---------------------HHHHHHHHHHT-CC-----CCTTCEEECTTTCT
T ss_pred HHH----CCCCEEEeeeccCcccccH---------------------HHHHHHHHHHh-CC-----CcceEEEeecccCC
Confidence 433 4679999999999865321 11111122221 11 11136889999999
Q ss_pred hHHHHHHHHHHHHH
Q psy3651 311 NIKIVFNAVKNTIL 324 (334)
Q Consensus 311 nI~~vf~~v~~~I~ 324 (334)
||.++|+++.+.+.
T Consensus 168 GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 168 GVQDVLERLVRDIP 181 (599)
T ss_dssp THHHHHHHHHHHSC
T ss_pred CchhHHHHHhhcCC
Confidence 99999999887653
No 155
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.87 E-value=3.9e-09 Score=104.59 Aligned_cols=114 Identities=20% Similarity=0.300 Sum_probs=71.3
Q ss_pred EEEEEeeCcceeeeecCCcccccccc--------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKW--------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw--------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
...+.+++..+.+|||+|++.....| ..++.+++++|+|+|.++. ... +...+++.+
T Consensus 264 ~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~----------~~~-~~~~i~~~l---- 328 (462)
T 3geh_A 264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG----------WTT-GDQEIYEQV---- 328 (462)
T ss_dssp HHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTC----------SCH-HHHHHHHHH----
T ss_pred EEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC----------CCH-HHHHHHHhc----
Confidence 34556678889999999997755433 3468899999999999985 121 223344433
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
.+.|+++|+||+|+..... ...+.++ .....++.+||+++.||.++
T Consensus 329 --~~~piivV~NK~Dl~~~~~---~~~~~~~-----------------------------~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 329 --KHRPLILVMNKIDLVEKQL---ITSLEYP-----------------------------ENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp --TTSCEEEEEECTTSSCGGG---STTCCCC-----------------------------TTCCCEEEEBTTTTBSHHHH
T ss_pred --cCCcEEEEEECCCCCcchh---hHHHHHh-----------------------------ccCCcEEEEECCCCCCHHHH
Confidence 2369999999999876532 1111110 02345789999999999999
Q ss_pred HHHHHHHHHHH
Q psy3651 316 FNAVKNTILHR 326 (334)
Q Consensus 316 f~~v~~~I~~~ 326 (334)
|+++.+.+...
T Consensus 375 ~~~i~~~~~~~ 385 (462)
T 3geh_A 375 ETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcc
Confidence 99999877543
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.87 E-value=3.4e-09 Score=105.46 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=81.5
Q ss_pred eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
.|+.+....+...+..+.||||+|++.+.+.+..++++++++|+|+|.++... +.. .+.......... ++.. .
T Consensus 97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~~~-~~~~~qt~e~~~-~~~~--~ 169 (483)
T 3p26_A 97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---ESG-FDLDGQTKEHML-LASS--L 169 (483)
T ss_dssp SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHH-HHHH--T
T ss_pred cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---ccc-cchhhhHHHHHH-HHHH--c
Confidence 35555566777788999999999999999999999999999999999998411 000 001112222211 1221 2
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
...|+||++||+|+.... .. ..+.+.+.+...+..+... ...+.++.+||+++.||.+
T Consensus 170 ~~~~iIvviNK~Dl~~~~----~~--------------~~~~i~~~~~~~l~~~g~~-~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 170 GIHNLIIAMNKMDNVDWS----QQ--------------RFEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCCCEEEEEECGGGGTTC----HH--------------HHHHHHHHHHHHHHHHTCC-GGGEEEEECCSSSCTTSSS
T ss_pred CCCcEEEEEECcCcccch----HH--------------HHHHHHHHHHHHHHHcCCC-cccceEEEEeeecCCCccc
Confidence 334799999999986521 10 1122223333333332211 1357889999999999975
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.86 E-value=3.7e-09 Score=107.71 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=84.1
Q ss_pred eeecceeEEEEEee-----CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 157 KATKGITEFTIVIS-----NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~-----~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
..|+......+.+. +..+.+|||+|+..+...|..+++.++++|+|+|.++- ...+.+..|...
T Consensus 53 GITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g-----------v~~qt~~~~~~a 121 (600)
T 2ywe_A 53 GITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG-----------IEAQTVANFWKA 121 (600)
T ss_dssp ---CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB-----------CCHHHHHHHHHH
T ss_pred cceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC-----------ccHHHHHHHHHH
Confidence 33444333444443 37889999999999999999999999999999999985 223444445444
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
.. .+.|+++|+||+|+..... +.+.+-+.+.+ ++ ....++++||+++.|
T Consensus 122 ~~----~~ipiIvviNKiDl~~a~~---------------------~~v~~el~~~l-g~-----~~~~vi~vSAktg~G 170 (600)
T 2ywe_A 122 VE----QDLVIIPVINKIDLPSADV---------------------DRVKKQIEEVL-GL-----DPEEAILASAKEGIG 170 (600)
T ss_dssp HH----TTCEEEEEEECTTSTTCCH---------------------HHHHHHHHHTS-CC-----CGGGCEECBTTTTBS
T ss_pred HH----CCCCEEEEEeccCccccCH---------------------HHHHHHHHHhh-CC-----CcccEEEEEeecCCC
Confidence 43 4689999999999865421 01111111110 11 112368999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTIL 324 (334)
Q Consensus 312 I~~vf~~v~~~I~ 324 (334)
|.++|+++.+.+.
T Consensus 171 I~~Lle~I~~~lp 183 (600)
T 2ywe_A 171 IEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHHHSC
T ss_pred chHHHHHHHHhcc
Confidence 9999999887653
No 158
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.83 E-value=1.1e-08 Score=104.14 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=81.8
Q ss_pred ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651 173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~ 252 (334)
.+.+|||+|+..+...|..+++.+|++|+|+|+++- -..++...+..+.. .++|+++++||+|+.
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-----------v~~qT~e~l~~l~~----~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-----------ccHhHHHHHHHHHH----cCCeEEEEecccccc
Confidence 489999999999999999999999999999999983 22334444443332 468999999999986
Q ss_pred hhhhccccchhhhhCCCCCCCCccHHH----HHHHHHHHHHh--hcc-------CCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 253 AEKLRTSKTSIAEHFPEFEGDPQDMQA----VQTFLLNYFKA--VKR-------DEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~----~~~fi~~~F~~--l~~-------~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
...- ...-..++............ ...-+...+.. +.. .....+.++.+||+++.||.++++++
T Consensus 136 ~~~~---~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I 212 (594)
T 1g7s_A 136 HGWR---VHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTML 212 (594)
T ss_dssp TTCC---CCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHH
T ss_pred cccc---cccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHH
Confidence 4311 00000010001111111100 00011111111 100 01244688999999999999999999
Q ss_pred HHHHH
Q psy3651 320 KNTIL 324 (334)
Q Consensus 320 ~~~I~ 324 (334)
...+.
T Consensus 213 ~~~~~ 217 (594)
T 1g7s_A 213 MGLAQ 217 (594)
T ss_dssp HHHHH
T ss_pred Hhhcc
Confidence 88664
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.82 E-value=5.8e-09 Score=102.32 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=80.8
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..|+.+....+...+.++.+||++|++.+.+.+..++..++++|+|+|.++- .+.+...++..+..
T Consensus 89 GiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-----------~~~qt~~~l~~~~~--- 154 (434)
T 1zun_B 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-----------VQTQTRRHSYIASL--- 154 (434)
T ss_dssp -CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---
T ss_pred CcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH---
Confidence 3455555566677788999999999999999999999999999999999984 22333333332221
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF 316 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf 316 (334)
....|+++++||+|+.... ...+ +...+-+.+.+..+.. ....+.++.+||+++.||.++|
T Consensus 155 ~~~~~iIvviNK~Dl~~~~----~~~~--------------~~i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 155 LGIKHIVVAINKMDLNGFD----ERVF--------------ESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTCCEEEEEEECTTTTTSC----HHHH--------------HHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCC
T ss_pred cCCCeEEEEEEcCcCCccc----HHHH--------------HHHHHHHHHHHHHhCC-CccCceEEEEeccCCCCccccc
Confidence 1223699999999986421 0000 0011112221112110 0134778999999999998754
Q ss_pred H
Q psy3651 317 N 317 (334)
Q Consensus 317 ~ 317 (334)
.
T Consensus 216 ~ 216 (434)
T 1zun_B 216 E 216 (434)
T ss_dssp T
T ss_pred c
Confidence 3
No 160
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.81 E-value=2.3e-08 Score=103.76 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=64.3
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.+.+|++.....+..++..+.+|||+|+..++..|..+++.+|++|+|+|.++.. ..+....|..+..
T Consensus 60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-----------~~~t~~~~~~~~~- 127 (691)
T 1dar_A 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-----------EPQSETVWRQAEK- 127 (691)
T ss_dssp -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-----------CHHHHHHHHHHHH-
T ss_pred hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-----------chhhHHHHHHHHH-
Confidence 3456777777778888999999999999999999999999999999999999852 2334455555443
Q ss_pred cCCCCCcEEEEEeCCCcchh
Q psy3651 235 VIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~e 254 (334)
.+.|+++|+||+|+...
T Consensus 128 ---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 128 ---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ---TTCCEEEEEECTTSTTC
T ss_pred ---cCCCEEEEEECCCcccC
Confidence 36899999999998764
No 161
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.80 E-value=1.9e-08 Score=97.89 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=71.6
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.+.+.+......+|++|+|+|.++- -.+.++.+.+..+ . .....|+++++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g----------~~~~qt~e~l~~~-~--~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP----------CPQPQTKEHLMAL-E--ILGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC----------SSCHHHHHHHHHH-H--HTTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC----------CCCchhHHHHHHH-H--HcCCCeEEEEEEccCC
Confidence 6799999999999988888888899999999999974 1122222222221 1 1233589999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
....- ... ..+++.+++.. .....+.++.+||+++.||.++++++.+.+.
T Consensus 148 ~~~~~--~~~--------------~~~~i~~~l~~-------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 148 VDEKQ--AEE--------------NYEQIKEFVKG-------TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp SCTTT--TTT--------------HHHHHHHHHTT-------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCHHH--HHH--------------HHHHHHHHHhh-------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 65321 000 11222222211 1123567899999999999999999887553
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.80 E-value=5.5e-09 Score=102.59 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=77.6
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+.+....+...+..+.+||++|++.+.+.|..+++.++++|+|+|.++- .. |.- ...+.+..+.+.....
T Consensus 68 ~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g-sf--e~~-~~~~~qt~~~~~~~~~-- 141 (435)
T 1jny_A 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG-EY--EAG-MSVEGQTREHIILAKT-- 141 (435)
T ss_dssp ---------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT-HH--HHH-HSTTCHHHHHHHHHHH--
T ss_pred cCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC-cc--ccc-cccchHHHHHHHHHHH--
Confidence 34456655566777789999999999999999999999999999999999982 10 000 0011122222221111
Q ss_pred CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
..-.|+++++||+|+..... ....+ +...+-+++.+..... ....+.++.+||+++.||.++
T Consensus 142 -~~~~~iivviNK~Dl~~~~~--~~~~~--------------~~~~~~i~~~~~~~~~-~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 142 -MGLDQLIVAVNKMDLTEPPY--DEKRY--------------KEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp -TTCTTCEEEEECGGGSSSTT--CHHHH--------------HHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBC
T ss_pred -cCCCeEEEEEEcccCCCccc--cHHHH--------------HHHHHHHHHHHHHcCC-CcCCceEEEeecccCcccccc
Confidence 12246999999999865210 00001 1111222222222211 113478899999999999765
Q ss_pred HH
Q psy3651 316 FN 317 (334)
Q Consensus 316 f~ 317 (334)
+.
T Consensus 204 ~~ 205 (435)
T 1jny_A 204 SE 205 (435)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 163
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.79 E-value=2.3e-08 Score=98.11 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=77.0
Q ss_pred EEEEEeeCcceeeeecCCcccccccc------------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKW------------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI 231 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw------------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i 231 (334)
...+.+++..+.+||++|++..+... ..+++.++++++|+|.++. ....+ ..+.+.+
T Consensus 220 ~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~----------~~~~~-~~i~~~l 288 (439)
T 1mky_A 220 DDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG----------ITRQD-QRMAGLM 288 (439)
T ss_dssp CEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTC----------CCHHH-HHHHHHH
T ss_pred EEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCC----------CCHHH-HHHHHHH
Confidence 34566778889999999997544332 2356789999999999874 11111 2222222
Q ss_pred HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651 232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN 311 (334)
Q Consensus 232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n 311 (334)
.. .+.|+++++||+|+..++- ... +...+.+.+.+..+ ....+++|||++|.|
T Consensus 289 -~~---~~~~~ilv~NK~Dl~~~~~----~~~--------------~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~g 341 (439)
T 1mky_A 289 -ER---RGRASVVVFNKWDLVVHRE----KRY--------------DEFTKLFREKLYFI-----DYSPLIFTSADKGWN 341 (439)
T ss_dssp -HH---TTCEEEEEEECGGGSTTGG----GCH--------------HHHHHHHHHHCGGG-----TTSCEEECBTTTTBS
T ss_pred -HH---cCCCEEEEEECccCCCchh----hHH--------------HHHHHHHHHHhccC-----CCCcEEEEECCCCCC
Confidence 22 4689999999999865321 001 11122233332211 235688999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3651 312 IKIVFNAVKNTILHR 326 (334)
Q Consensus 312 I~~vf~~v~~~I~~~ 326 (334)
|.++|+.+.+.+.+.
T Consensus 342 v~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 342 IDRMIDAMNLAYASY 356 (439)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876554
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.79 E-value=1.5e-09 Score=107.65 Aligned_cols=138 Identities=13% Similarity=0.128 Sum_probs=67.6
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc-hhhcccccccHHHHHHHHHHHHh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ-TLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~-~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
.+..|+++....+..++..+.+||++|++.+.+.+..++..+|++|+|+|.++-.. .-++. .....+.+.+ ...
T Consensus 104 ~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~--~~qt~e~l~~---~~~ 178 (467)
T 1r5b_A 104 EKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER--GGQTREHAVL---ART 178 (467)
T ss_dssp ---------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST--TCCHHHHHHH---HHH
T ss_pred hcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC--CCcHHHHHHH---HHH
Confidence 45667777777788888999999999999999999999999999999999987410 00000 0112222222 111
Q ss_pred hcCCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651 234 NVIFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 234 ~~~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
.++| ++|++||+|+..... ....+.. ..+.+.+++... ..+.. ...+.++.+||+++.||
T Consensus 179 ----~~vp~iivviNK~Dl~~~~~--~~~~~~~----------i~~e~~~~l~~~-~g~~~--~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 179 ----QGINHLVVVINKMDEPSVQW--SEERYKE----------CVDKLSMFLRRV-AGYNS--KTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp ----TTCSSEEEEEECTTSTTCSS--CHHHHHH----------HHHHHHHHHHHH-HCCCH--HHHEEEEECBTTTTBTT
T ss_pred ----cCCCEEEEEEECccCCCccc--cHHHHHH----------HHHHHHHHHHHh-cCCCc--cCCceEEeccccccccc
Confidence 3566 999999999854110 0000100 011222233221 01100 12477899999999999
Q ss_pred HHHH
Q psy3651 313 KIVF 316 (334)
Q Consensus 313 ~~vf 316 (334)
.++|
T Consensus 240 ~~l~ 243 (467)
T 1r5b_A 240 KDRV 243 (467)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8765
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.78 E-value=2.3e-08 Score=96.04 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=85.6
Q ss_pred eecceeEEEEEeeCcceeeeecCCccc---------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 158 ATKGITEFTIVISNIPFLFVDVGGQRS---------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~---------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
+|.+.....+.+.+..+.+|||+|+.. +++.+. .+..++.+++|+|+++.+ ....+.+..+
T Consensus 212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~---------~~~~~~~~~~ 281 (364)
T 2qtf_A 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSE---------NLLIETLQSS 281 (364)
T ss_dssp --CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCH---------HHHHHHHHHH
T ss_pred cccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCc---------chHHHHHHHH
Confidence 455566677788888899999999833 233333 468899999999999852 0133334444
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD 308 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d 308 (334)
.+++..-...+.|+++|+||+|+..... . .. .+.+..+.. .+. .....++.|||++
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~--~--~~-------------~~~~~~l~~----~l~---~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDL--Y--KK-------------LDLVEKLSK----ELY---SPIFDVIPISALK 337 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCH--H--HH-------------HHHHHHHHH----HHC---SCEEEEEECBTTT
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchH--H--HH-------------HHHHHHHHH----Hhc---CCCCcEEEEECCC
Confidence 4444433346789999999999864311 0 00 001110111 110 1124568899999
Q ss_pred CchHHHHHHHHHHHHHHHh
Q psy3651 309 TENIKIVFNAVKNTILHRN 327 (334)
Q Consensus 309 ~~nI~~vf~~v~~~I~~~~ 327 (334)
+.|+.++++++.+.+....
T Consensus 338 g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TBSHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHhcccC
Confidence 9999999999998776544
No 166
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.76 E-value=4.4e-08 Score=101.76 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=65.0
Q ss_pred eeeecceeEEEEEeeC-------cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651 156 RKATKGITEFTIVISN-------IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF 228 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~-------~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf 228 (334)
+..|++.....+.+++ ..+.||||+|+..+...|..+++.+|++|+|+|.++- .......+|
T Consensus 59 rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~ 127 (704)
T 2rdo_7 59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVW 127 (704)
T ss_pred cCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHH
Confidence 4456665556666665 8999999999999999999999999999999999984 223444555
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
..+.. .+.|+++|+||+|+...
T Consensus 128 ~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 128 RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHH----cCCCEEEEEeCCCcccc
Confidence 54432 46899999999998754
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.70 E-value=8e-09 Score=101.94 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=73.7
Q ss_pred EEEeeCcceeeeecCC--------cccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 166 TIVISNIPFLFVDVGG--------QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 166 ~~~~~~~~~~i~DvgG--------q~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
.+...+..+.+|||+| ++..+..+..++++++++|||+|.++. +...-.++..++..
T Consensus 65 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~------------~~~~d~~l~~~l~~--- 129 (456)
T 4dcu_A 65 SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR--- 129 (456)
T ss_dssp ECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC------------SCHHHHHHHHHHTT---
T ss_pred EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC------------CChHHHHHHHHHHH---
Confidence 3344678999999999 888899999999999999999997763 11222233333432
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|++|++||+|+..... ...++ ..+. -. ..+.+||+++.|+.++++
T Consensus 130 ~~~pvilV~NK~D~~~~~~-----~~~e~----------------------~~lg---~~--~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 130 TKKPVVLAVNKLDNTEMRA-----NIYDF----------------------YSLG---FG--EPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp CCSCEEEEEECC--------------CCS----------------------GGGS---SS--SEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEECccchhhhh-----hHHHH----------------------HHcC---CC--ceEEeecccccchHHHHH
Confidence 5789999999999864321 11111 1110 01 246899999999999999
Q ss_pred HHHHHH
Q psy3651 318 AVKNTI 323 (334)
Q Consensus 318 ~v~~~I 323 (334)
++.+.+
T Consensus 178 ~i~~~l 183 (456)
T 4dcu_A 178 AVAEHF 183 (456)
T ss_dssp HHHTTG
T ss_pred HHHhhc
Confidence 987755
No 168
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=9.2e-08 Score=99.20 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=64.6
Q ss_pred eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN 234 (334)
Q Consensus 155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~ 234 (334)
.+..|++.....+..++..+.+|||+|+..+...|..+++.+|++|+|+|.++. ........|..+..
T Consensus 58 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g-----------~~~~~~~~~~~~~~- 125 (693)
T 2xex_A 58 DRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG-----------VEPQTETVWRQATT- 125 (693)
T ss_dssp ------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB-----------SCHHHHHHHHHHHH-
T ss_pred hcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC-----------CcHHHHHHHHHHHH-
Confidence 345677766777788889999999999999999999999999999999999984 22344455655443
Q ss_pred cCCCCCcEEEEEeCCCcchh
Q psy3651 235 VIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~~e 254 (334)
.+.|+++|+||+|+...
T Consensus 126 ---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 126 ---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp ---TTCCEEEEEECTTSTTC
T ss_pred ---cCCCEEEEEECCCcccc
Confidence 36899999999998753
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.68 E-value=2.4e-08 Score=98.77 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=78.4
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
..|+.+....+...+..+.+|||+|++.+.+.+..++..+|++|+|+|.++-.. + .+.+...+....+..+ ..
T Consensus 70 GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~---~-~sf~~~~qt~~~~~~~-~~-- 142 (458)
T 1f60_A 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF---E-AGISKDGQTREHALLA-FT-- 142 (458)
T ss_dssp TCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHH---H-HHTCTTSHHHHHHHHH-HH--
T ss_pred CcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCcc---c-cccCcchhHHHHHHHH-HH--
Confidence 345555556677778899999999999999999999999999999999987310 0 0000000222222222 21
Q ss_pred CCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 237 FRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 237 ~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
.+.| ++|++||+|+.... ...+ +...+-+...+..+.. ....+.++.+||+++.||.+.
T Consensus 143 -~~v~~iivviNK~Dl~~~~----~~~~--------------~~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 143 -LGVRQLIVAVNKMDSVKWD----ESRF--------------QEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -TTCCEEEEEEECGGGGTTC----HHHH--------------HHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBC
T ss_pred -cCCCeEEEEEEccccccCC----HHHH--------------HHHHHHHHHHHHHcCC-CccCceEEEeecccCcCcccc
Confidence 2454 99999999986310 0001 0111112221111111 112367899999999998643
No 170
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.68 E-value=4.2e-08 Score=95.39 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=76.7
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl 251 (334)
..+.+||++|++.+.+.+......+|++|+|+|.++-. ......+.+.++..+ ...|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~------~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence 67999999999998888887888899999999999731 001223333333321 23589999999998
Q ss_pred chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
....- .... .+++.+|+. .. ....+.++.+||+++.||.++++++.+.+.
T Consensus 150 ~~~~~--~~~~--------------~~~i~~~l~----~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 150 VDKEK--ALEN--------------YRQIKEFIE----GT---VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp SCHHH--HHHH--------------HHHHHHHHT----TS---TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCHHH--HHHH--------------HHHHHHHHH----hc---CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 65321 0000 111111111 10 123567899999999999999999887543
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.4e-08 Score=102.16 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+.+....+...+..+.||||+|++.+.+.+..++++++++|+|+|.++-. .|. ............... . ...
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~-~~~~~~qt~e~l~~~-~--~lg 304 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FES-GFDLDGQTKEHMLLA-S--SLG 304 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHT-TCCTTSHHHHHHHHH-H--TTT
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---ccc-cchhhhHHHHHHHHH-H--HcC
Confidence 444556677778899999999999999999999999999999999998721 000 000111222222111 1 123
Q ss_pred CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV 315 (334)
Q Consensus 239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v 315 (334)
..|+||++||+|+.... ... .+.+.+.+...+..+... ...+.++.+||++|.||.++
T Consensus 305 i~~iIVVvNKiDl~~~~----~~~--------------~~ei~~~l~~~l~~~g~~-~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 305 IHNLIIAMNKMDNVDWS----QQR--------------FEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCEEEEEEECTTTTTTC----HHH--------------HHHHHHHHHHHHHHHTCC-GGGCEEEECCTTTCTTTSSC
T ss_pred CCeEEEEEecccccchh----HHH--------------HHHHHHHHHHHHHhhccc-ccCccEEeeecccCCCcccc
Confidence 34699999999986521 000 112222333333322211 12467899999999999865
No 172
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.65 E-value=5.8e-08 Score=87.99 Aligned_cols=138 Identities=12% Similarity=0.188 Sum_probs=79.6
Q ss_pred ecceeEEEEEeeCcceeeeecCCccccccc-----------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRK-----------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~k-----------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
|.......+..++..+.+|||+|+...... +..++++++++|+|+|++.+. ......+.+
T Consensus 58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~ 128 (260)
T 2xtp_A 58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQR 128 (260)
T ss_dssp CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHH
T ss_pred eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHH
Confidence 334444455667889999999998765322 223778999999999998741 122233445
Q ss_pred HHHHHhhcCCCCCcEEEEEe-CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC--eEEEEE
Q psy3651 228 FDTIINNVIFRNVSFILFLN-KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP--LFHHFT 304 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lN-K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~--i~~~~t 304 (334)
+..+.... ...|+++++| |+|+....+ .. -+... ..+.+.+.+. .+. .+. +..+.|
T Consensus 129 l~~~~~~~--~~~~~i~vv~nK~Dl~~~~~--~~-~i~~~---------~~~~~~~~~~----~~~---~~~~~~~~~~~ 187 (260)
T 2xtp_A 129 VKEIFGED--AMGHTIVLFTHKEDLNGGSL--MD-YMHDS---------DNKALSKLVA----ACG---GRICAFNNRAE 187 (260)
T ss_dssp HHHHHCGG--GGGGEEEEEECGGGGTTCCH--HH-HHHHC---------CCHHHHHHHH----HTT---TCEEECCTTCC
T ss_pred HHHHhCch--hhccEEEEEEcccccCCccH--HH-HHHhc---------chHHHHHHHH----HhC---CeEEEecCccc
Confidence 55544321 1346666666 999864322 10 01100 0011111111 111 110 111679
Q ss_pred eeecCchHHHHHHHHHHHHHHH
Q psy3651 305 TAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 305 sA~d~~nI~~vf~~v~~~I~~~ 326 (334)
||+++.||.++|++|.+.+...
T Consensus 188 SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 188 GSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.63 E-value=5.9e-08 Score=104.59 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=82.0
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+.+....+..++..+.+|||+|++.+.+.+..++..+|++|+|+|.++-. +.+..+++..+.. .
T Consensus 346 TIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv-----------~~QTrEhL~ll~~----l 410 (1289)
T 3avx_A 346 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-----------MPQTREHILLGRQ----V 410 (1289)
T ss_dssp --CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS-----------CTTHHHHHHHHHH----H
T ss_pred eEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC-----------cHHHHHHHHHHHH----c
Confidence 333334456667789999999999999999999999999999999999841 2223333332222 2
Q ss_pred CCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC--------
Q psy3651 239 NVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT-------- 309 (334)
Q Consensus 239 ~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~-------- 309 (334)
++| +||++||+|+.... .. +.. ..+++.+++. ... .....+.++.+||+++
T Consensus 411 gIP~IIVVINKiDLv~d~---e~--le~----------i~eEi~elLk----~~G-~~~~~vp~IpvSAktG~ng~~~w~ 470 (1289)
T 3avx_A 411 GVPYIIVFLNKCDMVDDE---EL--LEL----------VEMEVRELLS----QYD-FPGDDTPIVRGSALKALEGDAEWE 470 (1289)
T ss_dssp TCSCEEEEEECCTTCCCH---HH--HHH----------HHHHHHHHHH----HTT-SCTTTCCEEECCSTTTTTCCHHHH
T ss_pred CCCeEEEEEeecccccch---hh--HHH----------HHHHHHHHHH----hcc-ccccceeEEEEEeccCCCCCcccc
Confidence 567 89999999986421 00 000 0011111221 111 1123577899999999
Q ss_pred chHHHHHHHHHHHH
Q psy3651 310 ENIKIVFNAVKNTI 323 (334)
Q Consensus 310 ~nI~~vf~~v~~~I 323 (334)
.+|.++|+.+.+.+
T Consensus 471 eGI~eLleaL~~~I 484 (1289)
T 3avx_A 471 AKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred ccchhhHhHHhhhc
Confidence 57888888776543
No 174
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.62 E-value=1.1e-07 Score=86.18 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=58.6
Q ss_pred ecceeEEEEEeeCcceeeeecCCc--------ccccccccccc----cCCCeEEEEEeCCCccchhhcccccccHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQ--------RSQRRKWFQCF----DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq--------~~~r~kw~~~f----~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~ 226 (334)
|.......+..++..+.+|||+|. ....+.+..++ .+++++|+|+|++.+. ......++
T Consensus 57 T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~ 127 (247)
T 3lxw_A 57 TRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFT---------AQDQQAVR 127 (247)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCC---------HHHHHHHH
T ss_pred cccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCC---------HHHHHHHH
Confidence 444555566677899999999997 33344444444 8999999999998651 12234455
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 227 IFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 227 lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
++.++... ...+.|++||+||.|+..+
T Consensus 128 ~l~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 128 QVRDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHHHhCh-hhhccEEEEEEchHhcCCC
Confidence 55555432 2346799999999998553
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.62 E-value=8e-08 Score=99.23 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=60.9
Q ss_pred ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~ 238 (334)
|+......+..++..+.+||++|+..++..+..+++.++++|+|+|.++- -......++..+.. .
T Consensus 61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-----------~~~qt~~~~~~~~~----~ 125 (665)
T 2dy1_A 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-----------VQVGTERAWTVAER----L 125 (665)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----T
T ss_pred eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-----------cchhHHHHHHHHHH----c
Confidence 33344455666788999999999999999999999999999999998763 22334455555543 3
Q ss_pred CCcEEEEEeCCCcc
Q psy3651 239 NVSFILFLNKTDLL 252 (334)
Q Consensus 239 ~~piiL~lNK~Dl~ 252 (334)
+.|+++|+||+|+.
T Consensus 126 ~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 126 GLPRMVVVTKLDKG 139 (665)
T ss_dssp TCCEEEEEECGGGC
T ss_pred cCCEEEEecCCchh
Confidence 68999999999986
No 176
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.60 E-value=2.3e-07 Score=83.04 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=57.9
Q ss_pred ecceeEEEEEeeCcceeeeecCC-----------cccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGG-----------QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI 227 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgG-----------q~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l 227 (334)
|.......+.+.+..+.+|||+| ++..++.+..++.+++++|+|+|++..+. ...+.+.+
T Consensus 65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~l~~ 135 (239)
T 3lxx_A 65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE---------EEHKATEK 135 (239)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS---------HHHHHHHH
T ss_pred eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH---------HHHHHHHH
Confidence 34444556667788999999999 45566777788899999999999987632 12333444
Q ss_pred HHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 228 FDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 228 f~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
+...+... ...|++||+||+|+...
T Consensus 136 ~~~~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 136 ILKMFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred HHHHhhhh--ccceEEEEEeCCccCCc
Confidence 44433321 23589999999998654
No 177
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.59 E-value=1.5e-07 Score=87.85 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=73.2
Q ss_pred EEeeCcceeeeecCCcc---------cccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 167 IVISNIPFLFVDVGGQR---------SQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~---------~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
+..++..+.+|||+|+. .++..+..+++.+++++||+|.++. ..-.+ .+++.+..
T Consensus 51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~~--~i~~~l~~---- 114 (301)
T 1ega_A 51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDDE--MVLNKLRE---- 114 (301)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHHH--HHHHHHHS----
T ss_pred EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHHH--HHHHHHHh----
Confidence 34456789999999997 3455667889999999999998764 21111 22232221
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIKIVF 316 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~~vf 316 (334)
.+.|++|++||+|+...+- .+.+ .+. .+.. ..++ .++.+||+++.|+..++
T Consensus 115 ~~~P~ilvlNK~D~~~~~~-----~~~~-----------------~l~----~l~~--~~~~~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQEKA-----DLLP-----------------HLQ----FLAS--QMNFLDIVPISAETGLNVDTIA 166 (301)
T ss_dssp SSSCEEEEEESTTTCCCHH-----HHHH-----------------HHH----HHHT--TSCCSEEEECCTTTTTTHHHHH
T ss_pred cCCCEEEEEECcccCccHH-----HHHH-----------------HHH----HHHH--hcCcCceEEEECCCCCCHHHHH
Confidence 4689999999999865111 0111 111 1111 1122 57899999999999999
Q ss_pred HHHHHH
Q psy3651 317 NAVKNT 322 (334)
Q Consensus 317 ~~v~~~ 322 (334)
+.+.+.
T Consensus 167 ~~i~~~ 172 (301)
T 1ega_A 167 AIVRKH 172 (301)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988753
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.56 E-value=2.3e-08 Score=101.92 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=58.9
Q ss_pred eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc--cccHHHHHHHHHHHHhh
Q psy3651 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR--TNRLHESRNIFDTIINN 234 (334)
Q Consensus 157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~--~nrl~esl~lf~~i~~~ 234 (334)
..|+.+....+..++..+.||||+|++.+.+.+..++..++++|+|+|.++-. .|..- .....+.+.+.. .
T Consensus 240 GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~---~- 312 (592)
T 3mca_A 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLR---A- 312 (592)
T ss_dssp -------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHH---H-
T ss_pred CeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHH---H-
Confidence 34555556667777899999999999999999999999999999999998621 00000 022223332222 1
Q ss_pred cCCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH-HhhccCCCCCeEEEEEeeecCchH
Q psy3651 235 VIFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF-KAVKRDEKKPLFHHFTTAVDTENI 312 (334)
Q Consensus 235 ~~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F-~~l~~~~~~~i~~~~tsA~d~~nI 312 (334)
.+.| +||++||+|+.... ...+ +...+-+...+ ..+. .....+.++.+||++|.||
T Consensus 313 ---lgip~iIvviNKiDl~~~~----~~~~--------------~~i~~el~~~l~~~~g-~~~~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 313 ---LGISEIVVSVNKLDLMSWS----EDRF--------------QEIKNIVSDFLIKMVG-FKTSNVHFVPISAISGTNL 370 (592)
T ss_dssp ---SSCCCEEEEEECGGGGTTC----HHHH--------------HHHHHHHHHHHTTTSC-CCGGGEEEEEECSSSCSSS
T ss_pred ---cCCCeEEEEEecccccccc----HHHH--------------HHHHHHHHHHHHHhhC-CCccceEEEEEecccCccc
Confidence 2344 99999999986411 0001 11111222222 1111 1113467899999999999
Q ss_pred H
Q psy3651 313 K 313 (334)
Q Consensus 313 ~ 313 (334)
.
T Consensus 371 ~ 371 (592)
T 3mca_A 371 I 371 (592)
T ss_dssp C
T ss_pred c
Confidence 7
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.56 E-value=2e-07 Score=93.77 Aligned_cols=83 Identities=13% Similarity=0.240 Sum_probs=61.9
Q ss_pred eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV 235 (334)
Q Consensus 156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~ 235 (334)
+..|+......+..++..+.+|||+|+..++..+..++..++++|+|+|.++.. ......++..+.
T Consensus 66 rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-----------~~~t~~~~~~~~--- 131 (529)
T 2h5e_A 66 RGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-----------EDRTRKLMEVTR--- 131 (529)
T ss_dssp ----CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-----------CHHHHHHHHHHT---
T ss_pred CCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-----------hHHHHHHHHHHH---
Confidence 344555556678888999999999999999999999999999999999999841 122333333322
Q ss_pred CCCCCcEEEEEeCCCcch
Q psy3651 236 IFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 236 ~~~~~piiL~lNK~Dl~~ 253 (334)
..+.|+++|+||+|+..
T Consensus 132 -~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 132 -LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp -TTTCCEEEEEECTTSCC
T ss_pred -HcCCCEEEEEcCcCCcc
Confidence 24689999999999865
No 180
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.55 E-value=7.5e-08 Score=88.39 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=63.2
Q ss_pred eeecceeEEEEEe--eC--cceeeeecCCccc-------ccccc-------ccccc-------------CCCeEEEEEeC
Q psy3651 157 KATKGITEFTIVI--SN--IPFLFVDVGGQRS-------QRRKW-------FQCFD-------------SVTSILFLVSS 205 (334)
Q Consensus 157 ~~T~Gi~~~~~~~--~~--~~~~i~DvgGq~~-------~r~kw-------~~~f~-------------~v~~iIfv~dl 205 (334)
.+|+++......+ ++ +++.+|||+|+.. .+..+ ..|+. .+|+++|+++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 5677776655544 33 4899999999832 22332 33333 37899999987
Q ss_pred CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL 285 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~ 285 (334)
+.. ........+++.+.. ++|+++|+||+|+....- +.. ..+-+.
T Consensus 126 ~~~----------~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e------~~~--------------~~~~i~ 170 (274)
T 3t5d_A 126 SGH----------GLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEE------CQQ--------------FKKQIM 170 (274)
T ss_dssp CCS----------SCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHH------HHH--------------HHHHHH
T ss_pred CCC----------CCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHH------HHH--------------HHHHHH
Confidence 763 222333445555432 689999999999864311 111 011122
Q ss_pred HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+.+. ..++.++.+||++++++.++++++.+.
T Consensus 171 ~~l~------~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 171 KEIQ------EHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHH------HTTCCCCCC-----------CHHHHHT
T ss_pred HHHH------HcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2211 134556778999999999999888764
No 181
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.53 E-value=5.3e-08 Score=89.71 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=70.4
Q ss_pred CcceeeeecCCcc-------------cccccccccccCCCeEE-EEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 171 NIPFLFVDVGGQR-------------SQRRKWFQCFDSVTSIL-FLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 171 ~~~~~i~DvgGq~-------------~~r~kw~~~f~~v~~iI-fv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
...+.+|||+|+. ..+..+..|+++++++| +|+|.++. -...+...+.+.+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~----------~~~~~~~~~~~~~~---- 189 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD----------LANSDALKIAKEVD---- 189 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC----------GGGCHHHHHHHHHC----
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc----------hhhhHHHHHHHHhC----
Confidence 4789999999975 24456778898888776 79998863 11122333444332
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC-eEEEEEeeecCchHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP-LFHHFTTAVDTENIKIV 315 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~-i~~~~tsA~d~~nI~~v 315 (334)
..+.|+++|+||+|+..+.- . ..+ .+... +. ....+ ..++.+||+++.|+.++
T Consensus 190 ~~~~~~i~V~NK~Dl~~~~~--~---~~~-----------------~~~~~---~~-~~~~~~~~v~~~SA~~~~gi~~l 243 (299)
T 2aka_B 190 PQGQRTIGVITKLDLMDEGT--D---ARD-----------------VLENK---LL-PLRRGYIGVVNRSQKDIDGKKDI 243 (299)
T ss_dssp TTCSSEEEEEECGGGSCTTC--C---CHH-----------------HHTTC---SS-CCTTCEEECCCCCCBCTTSCBCH
T ss_pred CCCCeEEEEEEccccCCCCc--h---HHH-----------------HHhCC---cC-cCCCCcEEEECCChhhccccccH
Confidence 24689999999999865421 0 111 01000 00 00112 35678999999999999
Q ss_pred HHHHHH
Q psy3651 316 FNAVKN 321 (334)
Q Consensus 316 f~~v~~ 321 (334)
|+++.+
T Consensus 244 ~~~l~~ 249 (299)
T 2aka_B 244 TAALAA 249 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 182
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.52 E-value=2.1e-07 Score=86.94 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=65.1
Q ss_pred CcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhcccc
Q psy3651 181 GQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSK 260 (334)
Q Consensus 181 Gq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~ 260 (334)
+|++++.....++.++|++|+|+|+++.+. +.+.+...+... .. .++|++|++||+||..+.- .
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~------s~~~l~~~l~~~----~~---~~~~~ilV~NK~DL~~~~~---v 128 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEF------NNYLLDNMLVVY----EY---FKVEPVIVFNKIDLLNEEE---K 128 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTC------CHHHHHHHHHHH----HH---TTCEEEEEECCGGGCCHHH---H
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCC------CHHHHHHHHHHH----Hh---CCCCEEEEEEcccCCCccc---c
Confidence 477788888889999999999999998621 112233333322 22 5789999999999865320 0
Q ss_pred chhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651 261 TSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK 320 (334)
Q Consensus 261 ~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~ 320 (334)
..+. . +.+.+.. ..+.+++|||+++.||+++|..+.
T Consensus 129 ~~~~--------------~----~~~~~~~------~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 129 KELE--------------R----WISIYRD------AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHH--------------H----HHHHHHH------TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHH--------------H----HHHHHHH------CCCeEEEEECCCCCCHHHHHhhcc
Confidence 0011 1 1111111 235689999999999999998764
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.50 E-value=5.1e-08 Score=93.45 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=60.8
Q ss_pred eeecceeEEEEEe--eC--cceeeeecCCc-------cccccccc-------ccccCC-------------CeEEEEEeC
Q psy3651 157 KATKGITEFTIVI--SN--IPFLFVDVGGQ-------RSQRRKWF-------QCFDSV-------------TSILFLVSS 205 (334)
Q Consensus 157 ~~T~Gi~~~~~~~--~~--~~~~i~DvgGq-------~~~r~kw~-------~~f~~v-------------~~iIfv~dl 205 (334)
.+|+++....+.+ .+ ..+.+|||+|+ ++++..|. .|+.++ ++++|+++.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 3566665444433 33 47899999999 77888887 777543 457777765
Q ss_pred CCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651 206 SEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL 284 (334)
Q Consensus 206 s~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi 284 (334)
+. ..+.+.- .++..+ ..++|+|+|+||+|+...+- +.. +
T Consensus 156 ~~-----------~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~e------v~~------------------~ 195 (361)
T 2qag_A 156 FG-----------HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKE------RER------------------L 195 (361)
T ss_dssp SS-----------SSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHH------HHH------------------H
T ss_pred CC-----------CCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHH------HHH------------------H
Confidence 33 2222222 333332 25689999999999875421 111 0
Q ss_pred HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651 285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326 (334)
Q Consensus 285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~ 326 (334)
....... ....++.++.+||+++.+ .+.|.++.+.|.+.
T Consensus 196 k~~i~~~--~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 196 KKRILDE--IEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHH--TTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHH--HHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 0011111 122456788999999999 88898888887653
No 184
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.36 E-value=8.2e-07 Score=85.29 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=70.2
Q ss_pred CCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccc
Q psy3651 180 GGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTS 259 (334)
Q Consensus 180 gGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~ 259 (334)
..|+.+++.+.++++++++||+|+|+++++..+. ..+.+ . +.+.|++|++||+||..... .
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~-----~~l~~-------~-----l~~~piilV~NK~DLl~~~~--~ 116 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFI-----PGLPR-------F-----AADNPILLVGNKADLLPRSV--K 116 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGCC-----SSHHH-------H-----CTTSCEEEEEECGGGSCTTC--C
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCchh-----hHHHH-------H-----hCCCCEEEEEEChhcCCCcc--C
Confidence 4689999999999999999999999999853211 12221 1 34689999999999975422 1
Q ss_pred cchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 260 KTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 260 ~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
.+.+.+++.+.+.... -+...++.+||+++.|++++++.+.+..
T Consensus 117 -----------------~~~~~~~l~~~~~~~g---~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 117 -----------------YPKLLRWMRRMAEELG---LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp -----------------HHHHHHHHHHHHHTTT---CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHcC---CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 1222334444333221 1223678999999999999999887643
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.30 E-value=4.8e-07 Score=86.93 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=68.8
Q ss_pred CcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhcccc
Q psy3651 181 GQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSK 260 (334)
Q Consensus 181 Gq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~ 260 (334)
.++.+++.+.+++++++++|+|+|+++++..+ ...+.+. ..+.|++|++||+||..+.. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~------------~~~l~~~-----~~~~p~ilV~NK~DL~~~~~--~~ 115 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSW------------LPGLHRF-----VGNNKVLLVGNKADLIPKSV--KH 115 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHC------------CTTHHHH-----SSSSCEEEEEECGGGSCTTS--CH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccH------------HHHHHHH-----hCCCcEEEEEEChhcCCccc--CH
Confidence 56789999999999999999999999863111 1111221 24789999999999965422 11
Q ss_pred chhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651 261 TSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT 322 (334)
Q Consensus 261 ~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~ 322 (334)
+.+.+++...+.... -+...++.+||+++.||+++++.+.+.
T Consensus 116 -----------------~~~~~~l~~~~~~~g---~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 116 -----------------DKVKHWMRYSAKQLG---LKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp -----------------HHHHHHHHHHHHHTT---CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHcC---CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 122234443333221 122368899999999999999988653
No 186
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.30 E-value=1.1e-06 Score=79.89 Aligned_cols=85 Identities=9% Similarity=0.118 Sum_probs=56.0
Q ss_pred ecceeEEEEEeeCcceeeeecCCccccccccccccc---------CCCeEEEEEeCCCccchhhcccccccH-HHHHHHH
Q psy3651 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFD---------SVTSILFLVSSSEYDQTLVEDRRTNRL-HESRNIF 228 (334)
Q Consensus 159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~---------~v~~iIfv~dls~~d~~l~ed~~~nrl-~esl~lf 228 (334)
|.......+..++..+.+|||+|+..++.....+++ +++++|||++++... . ... .+.+..+
T Consensus 71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~-------~~~~~~~~~~l 142 (262)
T 3def_A 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-V-------DELDKQVVIAI 142 (262)
T ss_dssp CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-C-------CHHHHHHHHHH
T ss_pred ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-C-------CHHHHHHHHHH
Confidence 344445566778889999999999888766655554 789999999987741 0 111 1333333
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651 229 DTIINNVIFRNVSFILFLNKTDLLA 253 (334)
Q Consensus 229 ~~i~~~~~~~~~piiL~lNK~Dl~~ 253 (334)
...+... ...|+++++||+|+..
T Consensus 143 ~~~~~~~--~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 143 TQTFGKE--IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHCGG--GGGGEEEEEECTTCCC
T ss_pred HHHhchh--hhcCEEEEEeCcccCC
Confidence 3333211 1248999999999853
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.26 E-value=4e-06 Score=72.64 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=69.5
Q ss_pred EEeeCcceeeeecCCcccc----------cccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651 167 IVISNIPFLFVDVGGQRSQ----------RRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN 233 (334)
Q Consensus 167 ~~~~~~~~~i~DvgGq~~~----------r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~ 233 (334)
+.+.+ .+.+||++|+... ++....++ ..++++++|+|++... +..+ ..+ ...+.
T Consensus 68 ~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~----------~~~~-~~~-~~~~~ 134 (210)
T 1pui_A 68 FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL----------KDLD-QQM-IEWAV 134 (210)
T ss_dssp EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC----------CHHH-HHH-HHHHH
T ss_pred EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC----------chhH-HHH-HHHHH
Confidence 33444 7889999998531 22223455 4789999999998752 2111 011 11122
Q ss_pred hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651 234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK 313 (334)
Q Consensus 234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~ 313 (334)
. .+.|+++++||+|+....- ....+ +.+..++ ......+..+.|||+++.++.
T Consensus 135 ~---~~~~~~~v~nK~D~~s~~~--~~~~~--------------~~~~~~~--------~~~~~~~~~~~~Sal~~~~~~ 187 (210)
T 1pui_A 135 D---SNIAVLVLLTKADKLASGA--RKAQL--------------NMVREAV--------LAFNGDVQVETFSSLKKQGVD 187 (210)
T ss_dssp H---TTCCEEEEEECGGGSCHHH--HHHHH--------------HHHHHHH--------GGGCSCEEEEECBTTTTBSHH
T ss_pred H---cCCCeEEEEecccCCCchh--HHHHH--------------HHHHHHH--------HhcCCCCceEEEeecCCCCHH
Confidence 1 4578999999999865311 00000 1111111 111234678899999999999
Q ss_pred HHHHHHHHHHH
Q psy3651 314 IVFNAVKNTIL 324 (334)
Q Consensus 314 ~vf~~v~~~I~ 324 (334)
++++++.+.+.
T Consensus 188 ~l~~~l~~~~~ 198 (210)
T 1pui_A 188 KLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 188
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.20 E-value=1.4e-06 Score=92.22 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=55.9
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
+..+.+|||+|+..++..|..+++.++++|+|+|.++- .. .+....|..... .+.|+++|+||+|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g----------~~-~qt~~~~~~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG----------VC-VQTETVLRQALG----ERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB----------SC-HHHHHHHHHHHH----TTCEEEEEEECHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH----cCCCeEEEEECCC
Confidence 68899999999999999999999999999999999985 22 233455555543 4689999999999
Q ss_pred cch
Q psy3651 251 LLA 253 (334)
Q Consensus 251 l~~ 253 (334)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 874
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.15 E-value=3.9e-06 Score=75.51 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=69.1
Q ss_pred cceeeeecCCccccccccc------ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy3651 172 IPFLFVDVGGQRSQRRKWF------QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILF 245 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~------~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~ 245 (334)
..+.+|||+|+......+. ..+.+ +.+|+++|.+..... ..+............. .+.|++++
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~-------~~~~~~~~~~~~~~~~---~~~p~~iv 177 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKP-------NDYCFVRFFALLIDLR---LGATTIPA 177 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSH-------HHHHHHHHHHHHHHHH---HTSCEEEE
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCH-------HHHHHHHHHHHHHhcc---cCCCeEEE
Confidence 4678999999986543221 24567 999999998754111 1111111111111111 35799999
Q ss_pred EeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH-----HHHH--h----hccCCCCCeEEEEEeeecCchHHH
Q psy3651 246 LNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL-----NYFK--A----VKRDEKKPLFHHFTTAVDTENIKI 314 (334)
Q Consensus 246 lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~-----~~F~--~----l~~~~~~~i~~~~tsA~d~~nI~~ 314 (334)
+||+|+.... ....+.+++.+ .+...+.+. .+|. . +... .....++.+||+++.|+++
T Consensus 178 ~NK~D~~~~~---~~~~~~~~l~~-------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 178 LNKVDLLSEE---EKERHRKYFED-------IDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp ECCGGGCCHH---HHHHHHHHHHC-------HHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHH
T ss_pred Eecccccccc---cHHHHHHHHhC-------hHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHH
Confidence 9999986532 11111211100 000000110 0000 0 0000 1223578999999999999
Q ss_pred HHHHHHHHHH
Q psy3651 315 VFNAVKNTIL 324 (334)
Q Consensus 315 vf~~v~~~I~ 324 (334)
+++++.+.+-
T Consensus 247 l~~~i~~~~~ 256 (262)
T 1yrb_A 247 LETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.12 E-value=1.7e-05 Score=79.98 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
-||.|-+ +.|.-|+-.....+.+++.+++|+||.|+-.|-.=-...++-+|++|+|+|..+ --..
T Consensus 75 ~D~~~~E----reRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~ 139 (548)
T 3vqt_A 75 SDWMAME----RERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEA 139 (548)
T ss_dssp -----------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCH
T ss_pred cCChHHH----HHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------Cccc
Confidence 4566654 556677777788899999999999999999887766677888999999999998 6777
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
.+..+|+.... .+.|+++|.||+|....
T Consensus 140 qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 140 QTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred ccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 88889988765 57899999999998653
No 191
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.11 E-value=4.8e-06 Score=86.33 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=78.4
Q ss_pred cceeeeecCCccc---ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651 172 IPFLFVDVGGQRS---QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248 (334)
Q Consensus 172 ~~~~i~DvgGq~~---~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK 248 (334)
..+.+|||+|... ....+..|+.++|+||||+|.++. ....+ ...+...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~----------~s~~e-~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP----------CTLGE-RRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST----------TCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc----------cchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence 5799999999765 456778899999999999999875 22222 3334333322 25689999999
Q ss_pred CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH----HHHHhhccC---CCCCeEEEEEeee--------------
Q psy3651 249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL----NYFKAVKRD---EKKPLFHHFTTAV-------------- 307 (334)
Q Consensus 249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~----~~F~~l~~~---~~~~i~~~~tsA~-------------- 307 (334)
+|+...... ...... ..+.+.+.+. ......... ......++.+||+
T Consensus 240 ~Dl~~~~~~-~~ee~e-----------~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~ 307 (695)
T 2j69_A 240 WDQVRESLI-DPDDVE-----------ELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADL 307 (695)
T ss_dssp GGGGGGGCS-STTCHH-----------HHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCC
T ss_pred ccccccccc-ChhhHH-----------HHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhh
Confidence 998654310 000000 0111112222 221111110 0112357899999
Q ss_pred cCchHHHHHHHHHHHHHH
Q psy3651 308 DTENIKIVFNAVKNTILH 325 (334)
Q Consensus 308 d~~nI~~vf~~v~~~I~~ 325 (334)
++.|+.+++.++.+.+..
T Consensus 308 ~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 308 DGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.06 E-value=1.3e-05 Score=76.37 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=70.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+.||||+|-.. -.......+|.+|+|+|.+..++. ..+. ....+.|++|++||+
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~-------~~l~------------~~~~~~p~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL-------QGIK------------KGVLELADIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT-------TTCC------------TTSGGGCSEEEEECC
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH-------HHHH------------HhHhhcCCEEEEECC
Confidence 468899999999543 233445899999999998765321 0000 112335899999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC-CCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~-~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+..+.- . +...+.+.+.+....... .....++.+||++++||.++++++.+.+..
T Consensus 228 Dl~~~~~------~--------------~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 228 DGEHHKE------A--------------RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CGGGHHH------H--------------HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcChhH------H--------------HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9864321 0 011112222211111111 123568899999999999999999887643
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.05 E-value=3.8e-06 Score=80.04 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=52.6
Q ss_pred CcceeeeecCCcccc-------------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651 171 NIPFLFVDVGGQRSQ-------------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~-------------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~ 237 (334)
...+.+||++|+... +.....|+.++++||+|+|.++.+. ...+++.+...+. -
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~---------~~~~~~~l~~~~~----~ 201 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL---------ATSDAIKISREVD----P 201 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG---------GGCHHHHHHHHSC----T
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc---------CCHHHHHHHHHhc----c
Confidence 468999999999876 6677889999999999998876421 1134444444432 2
Q ss_pred CCCcEEEEEeCCCcchh
Q psy3651 238 RNVSFILFLNKTDLLAE 254 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~e 254 (334)
.+.|+++++||+|+..+
T Consensus 202 ~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp TCTTEEEEEECGGGCCT
T ss_pred cCCCEEEEEeCCccCCC
Confidence 46799999999998754
No 194
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.03 E-value=1.2e-05 Score=73.31 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=49.6
Q ss_pred EEEEEeeCcceeeeecCCccccccccc-------cc--ccCCCeEEEEEeCCCccchhhcccccccHH-HHHHHHHHHHh
Q psy3651 164 EFTIVISNIPFLFVDVGGQRSQRRKWF-------QC--FDSVTSILFLVSSSEYDQTLVEDRRTNRLH-ESRNIFDTIIN 233 (334)
Q Consensus 164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~-------~~--f~~v~~iIfv~dls~~d~~l~ed~~~nrl~-esl~lf~~i~~ 233 (334)
...+..++.++.+|||+|+........ .| ..+++++|||+|++.. ++. ....+++.+..
T Consensus 79 ~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-----------~~~~~~~~~~~~l~~ 147 (270)
T 1h65_A 79 MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-----------RVDNLDKLVAKAITD 147 (270)
T ss_dssp EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-----------CCCHHHHHHHHHHHH
T ss_pred EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-----------cCCHHHHHHHHHHHH
Confidence 344556778999999999987653222 22 3479999999998763 221 11233333332
Q ss_pred hcC-CCCCcEEEEEeCCCcch
Q psy3651 234 NVI-FRNVSFILFLNKTDLLA 253 (334)
Q Consensus 234 ~~~-~~~~piiL~lNK~Dl~~ 253 (334)
... -...|+++++||+|+..
T Consensus 148 ~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 148 SFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp HHCGGGGGGEEEEEECCSCCC
T ss_pred HhCcccccCEEEEEECcccCC
Confidence 100 01269999999999854
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.02 E-value=1.1e-05 Score=78.64 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=73.1
Q ss_pred EEeeC-cceeeeecCCccc----cccccccc---ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCC
Q psy3651 167 IVISN-IPFLFVDVGGQRS----QRRKWFQC---FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIF 237 (334)
Q Consensus 167 ~~~~~-~~~~i~DvgGq~~----~r~kw~~~---f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~ 237 (334)
+...+ ..+.+||+.|+.. .+..+..+ .+.++.+|+|+|++ . ..+.+...+..++... +.+
T Consensus 199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~----------~~~~~ls~g~~el~~la~aL 267 (416)
T 1udx_A 199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-D----------EPLKTLETLRKEVGAYDPAL 267 (416)
T ss_dssp EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-S----------CHHHHHHHHHHHHHHHCHHH
T ss_pred EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-c----------CCHHHHHHHHHHHHHHhHHh
Confidence 34443 7789999999843 22233333 35799999999998 2 2333332333333221 112
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.+.|.+|++||+|+..... ... +.+.+. ...+.++.+||+++++|+++++
T Consensus 268 ~~~P~ILVlNKlDl~~~~~---~~~---------------------l~~~l~------~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 268 LRRPSLVALNKVDLLEEEA---VKA---------------------LADALA------REGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHSCEEEEEECCTTSCHHH---HHH---------------------HHHHHH------TTTSCEEECCTTTCTTHHHHHH
T ss_pred hcCCEEEEEECCChhhHHH---HHH---------------------HHHHHH------hcCCeEEEEECCCccCHHHHHH
Confidence 3568999999999864311 111 111111 1235688999999999999999
Q ss_pred HHHHHHHH
Q psy3651 318 AVKNTILH 325 (334)
Q Consensus 318 ~v~~~I~~ 325 (334)
++.+.+.+
T Consensus 318 ~i~~~l~~ 325 (416)
T 1udx_A 318 ALHALVRS 325 (416)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998864
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.01 E-value=2.4e-05 Score=68.38 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=66.4
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+.+||++|+-... .++..+.+.+|+|+|.++.+. ... .+.... +.|+++++||+
T Consensus 107 ~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~---------~~~----~~~~~~------~~~~iiv~NK~ 164 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD---------VVE----KHPEIF------RVADLIVINKV 164 (221)
T ss_dssp TTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT---------HHH----HCHHHH------HTCSEEEEECG
T ss_pred CCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch---------hhh----hhhhhh------hcCCEEEEecc
Confidence 35678899999972111 112236788999999987521 110 111111 36889999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
|+....- . +.+.+.+++.. + ...+.++.+||+++.|+.++|+++.+.+..
T Consensus 165 Dl~~~~~----~--------------~~~~~~~~~~~----~----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 165 ALAEAVG----A--------------DVEKMKADAKL----I----NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp GGHHHHT----C--------------CHHHHHHHHHH----H----CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred cCCcchh----h--------------HHHHHHHHHHH----h----CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 9865310 0 11222223322 1 124678899999999999999999987754
No 197
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.99 E-value=6e-06 Score=76.52 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=49.1
Q ss_pred eCcceeeeecCCccc-------------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 170 SNIPFLFVDVGGQRS-------------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~-------------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
.+..+.+|||+|... .+..+..++.+++++|+|+|.++.+.. +. +...+.+.+ .
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~--~~~~i~~~~-~--- 195 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NS--DALQLAKEV-D--- 195 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TC--SHHHHHHHH-C---
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hh--HHHHHHHHh-C---
Confidence 357899999999864 455677889999999999998654210 01 112233322 1
Q ss_pred CCCCcEEEEEeCCCcchh
Q psy3651 237 FRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~e 254 (334)
-.+.|+++|+||+|+...
T Consensus 196 ~~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 196 PEGKRTIGVITKLDLMDK 213 (315)
T ss_dssp SSCSSEEEEEECTTSSCS
T ss_pred CCCCcEEEEEcCcccCCc
Confidence 146899999999998653
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.91 E-value=4e-06 Score=79.76 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=64.2
Q ss_pred CcceeeeecCCccc-------------ccccccccccCCCeEEE-EEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 171 NIPFLFVDVGGQRS-------------QRRKWFQCFDSVTSILF-LVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 171 ~~~~~i~DvgGq~~-------------~r~kw~~~f~~v~~iIf-v~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
...+.+|||+|... .+..+..|+.+.+.+|+ |+|.+.. - .-.+.+.+.+.+.
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~-~---------~~~~~~~i~~~~~---- 194 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-L---------ANSDALKVAKEVD---- 194 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC-G---------GGCHHHHHHHHHC----
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc-c---------chhHHHHHHHHhC----
Confidence 47899999999743 34566678876665555 5554431 0 1112333444432
Q ss_pred CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC-eEEEEEeeecCchHHHH
Q psy3651 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP-LFHHFTTAVDTENIKIV 315 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~-i~~~~tsA~d~~nI~~v 315 (334)
..+.|+++|+||+|+..+.- ...++ +..+ . .....+ ..++.+||+++.|+.++
T Consensus 195 ~~~~~~i~V~NK~Dl~~~~~--~~~~~--------------------~~~~---~-~~l~~~~~~v~~~SA~~~~~i~~l 248 (353)
T 2x2e_A 195 PQGQRTIGVITKLDLMDEGT--DARDV--------------------LENK---L-LPLRRGYIGVVNRSQKDIDGKKDI 248 (353)
T ss_dssp TTCTTEEEEEECGGGSCTTC--CCHHH--------------------HTTC---S-SCCTTCEEECCCCCHHHHHTTCCH
T ss_pred cCCCceEEEeccccccCcch--hHHHH--------------------HhCC---c-ccccCCceEEEeCCcccccccccH
Confidence 24689999999999865321 11111 0000 0 000122 24567999999999988
Q ss_pred HHHHHH
Q psy3651 316 FNAVKN 321 (334)
Q Consensus 316 f~~v~~ 321 (334)
++++.+
T Consensus 249 ~~~l~~ 254 (353)
T 2x2e_A 249 TAALAA 254 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.80 E-value=7.8e-06 Score=83.94 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=72.6
Q ss_pred CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651 143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222 (334)
Q Consensus 143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~ 222 (334)
-||.|-+ +.|.-|+-.....+.+++.+++++||.|+..|-.--....+-+|++|+|+|..+ --..
T Consensus 42 ~D~~~~E----reRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~-----------GV~~ 106 (638)
T 3j25_A 42 TDNTLLE----RQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-----------GVQA 106 (638)
T ss_dssp TTCSTTH----HHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC-----------TTCS
T ss_pred cCCcHHH----HhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC-----------CCcH
Confidence 3455543 445556666667788899999999999999987777777889999999999988 4555
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
....+|+.... .+.|.|+|.||+|....
T Consensus 107 qT~~v~~~a~~----~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 107 QTRILFHALRK----MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHHHHH----HTCSCEECCEECCSSSC
T ss_pred HHHHHHHHHHH----cCCCeEEEEeccccccC
Confidence 67778887766 45789999999998654
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.50 E-value=0.00022 Score=67.36 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=65.9
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
++..+.+|||+|...... .....+|++|+|+|.+..+.. ..+.. .. .+.|.++|+||+
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK~ 204 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINKD 204 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECCC
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEECC
Confidence 468899999999764332 245899999999999875321 11111 11 135789999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~ 324 (334)
|+....- +. .+.+-++..+..+... ......++.+||+++.|+..+++++.+.+.
T Consensus 205 Dl~~~~~------~~--------------~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 205 DGDNHTN------VA--------------IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CTTCHHH------HH--------------HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCChHH------HH--------------HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9864310 00 0111122221111110 011346788999999999999999988654
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.48 E-value=0.00028 Score=73.21 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=62.7
Q ss_pred ceeeeecceeEEEEEee-------CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH
Q psy3651 154 HARKATKGITEFTIVIS-------NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226 (334)
Q Consensus 154 ~~~~~T~Gi~~~~~~~~-------~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~ 226 (334)
+.|.-|+--....+.++ ++.++++||.|+-.|..=-....+-+|++|.|+|..+ --......
T Consensus 60 ~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~ 128 (709)
T 4fn5_A 60 QERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSET 128 (709)
T ss_dssp --------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHH
T ss_pred HHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHH
Confidence 34555555555566553 5789999999999876656666778999999999998 56677888
Q ss_pred HHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 227 IFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 227 lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
+|+.... .+.|+++|.||+|....
T Consensus 129 v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 129 VWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred HHHHHHH----cCCCeEEEEccccccCc
Confidence 8988876 46899999999998653
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.47 E-value=5.1e-05 Score=76.56 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=49.8
Q ss_pred cceeeeecCCccc-----------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651 172 IPFLFVDVGGQRS-----------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV 240 (334)
Q Consensus 172 ~~~~i~DvgGq~~-----------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~ 240 (334)
..+.+|||+|+.. +...+..++..+++||||+|.++. ....+...+++.+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence 3689999999975 345667788999999999999885 223333444444322 357
Q ss_pred cEEEEEeCCCcch
Q psy3651 241 SFILFLNKTDLLA 253 (334)
Q Consensus 241 piiL~lNK~Dl~~ 253 (334)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999874
No 203
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.41 E-value=3.9e-05 Score=71.43 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=55.5
Q ss_pred cceeeeecCCc-------cccccccc-------ccccCC-------------CeEEEEEeCCC--ccchhhcccccccHH
Q psy3651 172 IPFLFVDVGGQ-------RSQRRKWF-------QCFDSV-------------TSILFLVSSSE--YDQTLVEDRRTNRLH 222 (334)
Q Consensus 172 ~~~~i~DvgGq-------~~~r~kw~-------~~f~~v-------------~~iIfv~dls~--~d~~l~ed~~~nrl~ 222 (334)
..+++||++|+ +.++..+. .|+.+. ++++|+.+.+. .|. ..
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~----------~~ 145 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKP----------LD 145 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCH----------HH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCH----------HH
Confidence 57899999999 55666655 565433 34677766432 321 11
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEE
Q psy3651 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHH 302 (334)
Q Consensus 223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~ 302 (334)
+++...+ ..+.++++|+||.|+...+- +.. ..+.+.+++. ..++.++
T Consensus 146 --~~~l~~l-----~~~~~iilV~~K~Dl~~~~e------~~~----------~~~~~~~~~~----------~~~~~~~ 192 (301)
T 2qnr_A 146 --VAFMKAI-----HNKVNIVPVIAKADTLTLKE------RER----------LKKRILDEIE----------EHNIKIY 192 (301)
T ss_dssp --HHHHHHH-----TTTSCEEEEECCGGGSCHHH------HHH----------HHHHHHHHHH----------HTTCCCC
T ss_pred --HHHHHHH-----HhcCCEEEEEEeCCCCCHHH------HHH----------HHHHHHHHHH----------HcCCeEE
Confidence 2333333 14579999999999865321 100 0111221221 1236678
Q ss_pred EEeeecCchHHHHHHHHHHHHHH
Q psy3651 303 FTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 303 ~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
++||+++ |+.++|.++.+.+.+
T Consensus 193 e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 193 HLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp CCC----------CHHHHHHHHT
T ss_pred ecCCccc-cccHHHHHHHHHhhc
Confidence 9999999 999999999988764
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.37 E-value=0.00063 Score=64.54 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=63.6
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+.++||+|-. ..+....+.++.+++|+|.+..+ .... +. ..+ ...|.++++||+
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~~----------~~~~-i~--~~i------l~~~~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGGD----------ELQG-IK--RGI------IEMADLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcch----------hHHH-hH--HHH------HhcCCEEEEeee
Confidence 56788999999964 23455678999999999998742 1110 00 011 235789999999
Q ss_pred CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+....- ....+.. +......+... ......++.|||+++.|+.+++++|.+.+
T Consensus 223 Dl~~~~~--~~~~~~~------------------l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVP--ARRIQAE------------------YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHH--HHHHHHH------------------HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCchh--HHHHHHH------------------HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9864210 0000000 11000000100 01234678899999999999999998865
No 205
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.34 E-value=9.9e-05 Score=71.46 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=24.9
Q ss_pred cceeeeecCCccc----cc---ccccccccCCCeEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRS----QR---RKWFQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 172 ~~~~i~DvgGq~~----~r---~kw~~~f~~v~~iIfv~dls~~ 208 (334)
..+.+|||+|+.. .+ ..+..++++++++|+|+|+++.
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 5799999999853 22 2334567899999999999885
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.20 E-value=0.00017 Score=66.57 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccc
Q psy3651 180 GGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTS 259 (334)
Q Consensus 180 gGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~ 259 (334)
|.....++.+....+.+++||+|+|..+... .+ ... ++++ ..+.|.++++||+||.....
T Consensus 8 Ghm~ka~~~~~~~l~~aDvVl~VvDAr~p~~--------~~-~~~---l~~~-----l~~kp~ilVlNK~DL~~~~~--- 67 (282)
T 1puj_A 8 GHMAKARREVTEKLKLIDIVYELVDARIPMS--------SR-NPM---IEDI-----LKNKPRIMLLNKADKADAAV--- 67 (282)
T ss_dssp -CTTHHHHHHHHHGGGCSEEEEEEETTSTTT--------TS-CHH---HHHH-----CSSSCEEEEEECGGGSCHHH---
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc--------cC-CHH---HHHH-----HCCCCEEEEEECcccCCHHH---
Confidence 3333455666677899999999999988622 11 011 1122 25789999999999865311
Q ss_pred cchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651 260 KTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325 (334)
Q Consensus 260 ~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~ 325 (334)
... ..+|+ . ...+.++++||+++.++.++++.+.+.+-.
T Consensus 68 ---~~~--------------~~~~~----~------~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 68 ---TQQ--------------WKEHF----E------NQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ---HHH--------------HHHHH----H------TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ---HHH--------------HHHHH----H------hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 111 11111 1 123467889999999999999988876653
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.09 E-value=0.00078 Score=58.74 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
.|++|++||+|+..++- .. .+.+.+++... .....+++|||+++.||.++|+++
T Consensus 165 ~~~iiv~NK~Dl~~~~~----~~--------------~~~~~~~~~~~--------~~~~~~~~~Sa~~g~gv~~l~~~l 218 (226)
T 2hf9_A 165 TADLIVINKIDLADAVG----AD--------------IKKMENDAKRI--------NPDAEVVLLSLKTMEGFDKVLEFI 218 (226)
T ss_dssp TCSEEEEECGGGHHHHT----CC--------------HHHHHHHHHHH--------CTTSEEEECCTTTCTTHHHHHHHH
T ss_pred cCCEEEEeccccCchhH----HH--------------HHHHHHHHHHh--------CCCCeEEEEEecCCCCHHHHHHHH
Confidence 57899999999865421 01 11222222221 123578999999999999999999
Q ss_pred HHHHHH
Q psy3651 320 KNTILH 325 (334)
Q Consensus 320 ~~~I~~ 325 (334)
.+.+..
T Consensus 219 ~~~~~~ 224 (226)
T 2hf9_A 219 EKSVKE 224 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887653
No 208
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.68 E-value=0.0041 Score=59.34 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=29.9
Q ss_pred cceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~ 208 (334)
..+++||++|+.... ..+..++++++++++|+|+++-
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 579999999998642 3344567999999999999973
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.65 E-value=0.00094 Score=69.65 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=45.5
Q ss_pred CcceeeeecCCcccc---------cccc----cccc-cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651 171 NIPFLFVDVGGQRSQ---------RRKW----FQCF-DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~---------r~kw----~~~f-~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~ 236 (334)
...+.++||+|-..- +..| ..|. ..++.|++|+|.+.. -.-.+.+.+.+.+..
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~----------~~~~d~l~ll~~L~~--- 215 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD----------LANSDALKIAKEVDP--- 215 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC----------SSSCHHHHHHHHHCT---
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC----------cchhHHHHHHHHHHh---
Confidence 357899999996541 1223 2344 578999999999873 111233344444422
Q ss_pred CCCCcEEEEEeCCCcchh
Q psy3651 237 FRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 237 ~~~~piiL~lNK~Dl~~e 254 (334)
.+.|+++|+||+|+..+
T Consensus 216 -~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 216 -QGQRTIGVITKLDLMDE 232 (772)
T ss_dssp -TCSSEEEEEECTTSSCT
T ss_pred -cCCCEEEEEeCcccCCc
Confidence 46899999999998754
No 210
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.55 E-value=0.0019 Score=61.73 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.2
Q ss_pred CcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCc
Q psy3651 171 NIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~ 208 (334)
+..+++||++|+.... +.+..++++++++++|+|.++-
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~ 112 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPD 112 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCC
Confidence 4678999999998642 2345567999999999999973
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.47 E-value=0.0058 Score=59.40 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651 238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN 317 (334)
Q Consensus 238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~ 317 (334)
.++|+|+|+||+|+...+- +..+ .+.+.+++.. .++.++.+||+++.++..+|.
T Consensus 166 ~~v~iIlVinK~Dll~~~e------v~~~----------k~~i~~~~~~----------~~i~~~~~sa~~~~~v~~~~~ 219 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTPEE------CQQF----------KKQIMKEIQE----------HKIKIYEFPETDDEEENKLVK 219 (418)
T ss_dssp TTSEEEEEEESTTSSCHHH------HHHH----------HHHHHHHHHH----------HTCCCCCCC------------
T ss_pred ccCcEEEEEEcccCccHHH------HHHH----------HHHHHHHHHH----------cCCeEEeCCCCCCcCHHHHHH
Confidence 3689999999999865321 1110 0111222211 134567788998888888877
Q ss_pred HHHHH
Q psy3651 318 AVKNT 322 (334)
Q Consensus 318 ~v~~~ 322 (334)
.+.+.
T Consensus 220 ~l~~~ 224 (418)
T 2qag_C 220 KIKDR 224 (418)
T ss_dssp -----
T ss_pred HHHhh
Confidence 76653
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.09 E-value=0.0086 Score=54.37 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=54.8
Q ss_pred cccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchh
Q psy3651 184 SQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSI 263 (334)
Q Consensus 184 ~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l 263 (334)
.-++.......++|.||.|+|..+..... +..-+ +. +.|.++++||+||..... .
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~------~~~l~------------ll-~k~~iivlNK~DL~~~~~------~ 64 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATS------AYGVD------------FS-RKETIILLNKVDIADEKT------T 64 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTS------CTTSC------------CT-TSEEEEEEECGGGSCHHH------H
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCc------ChHHH------------hc-CCCcEEEEECccCCCHHH------H
Confidence 33445566778999999999998762211 11101 11 689999999999865321 1
Q ss_pred hhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651 264 AEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN 321 (334)
Q Consensus 264 ~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~ 321 (334)
..+ .+|+ .. .++.+ .+||+++.|+..+++.+.+
T Consensus 65 ~~~--------------~~~~----~~------~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 65 KKW--------------VEFF----KK------QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHH--------------HHHH----HH------TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHH--------------HHHH----HH------cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 111 1111 11 12345 8999999999998877644
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.67 E-value=0.016 Score=54.49 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=61.4
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
.+..+.++||+|..... ....+.++.+++|+|.+..+.. ..+.+ .+. ..+.++++||.
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~-------~~i~~------~i~------~~~~ivvlNK~ 203 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDEL-------QGIKK------GIF------ELADMIAVNKA 203 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC-------------CCT------THH------HHCSEEEEECC
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccH-------HHHHH------HHh------ccccEEEEEch
Confidence 57889999999986422 2345789999999998653210 00000 011 12557778999
Q ss_pred Ccchh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC--CCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651 250 DLLAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE--KKPLFHHFTTAVDTENIKIVFNAVKNTI 323 (334)
Q Consensus 250 Dl~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~--~~~i~~~~tsA~d~~nI~~vf~~v~~~I 323 (334)
|+... .. ...... -+... ..+.... .....++.|||+++.|+.++++.+.+..
T Consensus 204 Dl~~~~~~--s~~~~~------------------~l~~a-~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 204 DDGDGERR--ASAAAS------------------EYRAA-LHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp STTCCHHH--HHHHHH------------------HHHHH-HTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hccCchhH--HHHHHH------------------HHHHH-HHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 96431 11 000000 01100 1111100 0122467799999999999999988754
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.63 E-value=0.032 Score=53.76 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=25.6
Q ss_pred cceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCccc
Q psy3651 172 IPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEYDQ 210 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~d~ 210 (334)
..+++||++|+...+. .|..+++++++|++|+|+++.+.
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3589999999987554 68889999999999999997544
No 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.44 E-value=0.025 Score=52.65 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=32.9
Q ss_pred ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651 191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254 (334)
Q Consensus 191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e 254 (334)
.--.++|.|++|+|+.+.+- + .. +++..+-.-+-.+.|.+|++||+||...
T Consensus 82 ~~~anvD~v~~V~~~~~p~~--------~-~~----~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSF--------S-TA----LLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCCEEEEEEESTTTTC--------C-HH----HHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHHhCCEEEEEEeCCCCCC--------C-HH----HHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 35689999999999987521 1 11 1222221112357899999999998653
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.29 E-value=0.084 Score=50.13 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=48.9
Q ss_pred cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCC
Q psy3651 192 CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE 271 (334)
Q Consensus 192 ~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~ 271 (334)
.-.++|.|++|.+.. .+ .+.+.++..+..-+ ..+.|.+|++||+||..... ...+..
T Consensus 127 i~anvD~v~iv~a~~-P~------~~~~~i~r~L~~a~-------~~~~~~iivlNK~DL~~~~~---~~~~~~------ 183 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PE------LSLNIIDRYLVGCE-------TLQVEPLIVLNKIDLLDDEG---MDFVNE------ 183 (358)
T ss_dssp EEECCCEEEEEEEST-TT------CCHHHHHHHHHHHH-------HHTCEEEEEEECGGGCCHHH---HHHHHH------
T ss_pred HHhcCCEEEEEEeCC-CC------CCHHHHHHHHHHHH-------hcCCCEEEEEECccCCCchh---HHHHHH------
Confidence 357999999887653 31 11222322222111 13578899999999865421 000111
Q ss_pred CCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651 272 GDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 319 (334)
Q Consensus 272 g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v 319 (334)
+ ...|.. ..+.++++||.++.+++.+...+
T Consensus 184 -----------~-~~~y~~------~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 184 -----------Q-MDIYRN------IGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp -----------H-HHHHHT------TTCCEEECBTTTTBTHHHHHHHH
T ss_pred -----------H-HHHHHh------CCCcEEEEecCCCcCHHHHHHhc
Confidence 1 122222 23458899999999998876543
No 217
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.63 E-value=0.21 Score=47.74 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=48.5
Q ss_pred eEEEEEeeCcceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh-h
Q psy3651 163 TEFTIVISNIPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN-N 234 (334)
Q Consensus 163 ~~~~~~~~~~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~-~ 234 (334)
....+.+.+.++++.|++|-..... ......+.+++|++|+|.++. - .+...+..++.. .
T Consensus 110 ~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p----------~--~~~~~i~~EL~~~~ 177 (376)
T 4a9a_A 110 VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKP----------L--HHKQIIEKELEGVG 177 (376)
T ss_dssp EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSH----------H--HHHHHHHHHHHHTT
T ss_pred eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCcc----------H--HHHHHHHHHHHHhh
Confidence 3345667889999999999754321 223345789999999999874 1 111111122211 1
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy3651 235 VIFRNVSFILFLNKTDLL 252 (334)
Q Consensus 235 ~~~~~~piiL~lNK~Dl~ 252 (334)
..+.+.|.++++||.|.-
T Consensus 178 ~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 178 IRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEETCCCCCEEEEECSSS
T ss_pred HhhccCChhhhhhHhhhh
Confidence 234567889999999964
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.54 E-value=3.7 Score=40.58 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=40.2
Q ss_pred eCcceeeeecCCccccc-cccccc-----ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE-
Q psy3651 170 SNIPFLFVDVGGQRSQR-RKWFQC-----FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF- 242 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r-~kw~~~-----f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi- 242 (334)
.+..+.|+||+|..... ..|... .-.++.++||+|.+.- ....+....|.. ..|+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g----------~~~~~~a~~~~~--------~~~i~ 243 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG----------QACEAQAKAFKD--------KVDVA 243 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC----------TTHHHHHHHHHH--------HHCCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc----------ccHHHHHHHHHh--------hcCce
Confidence 46789999999987432 222111 2278999999998873 111111222222 1465
Q ss_pred EEEEeCCCcc
Q psy3651 243 ILFLNKTDLL 252 (334)
Q Consensus 243 iL~lNK~Dl~ 252 (334)
++|+||.|..
T Consensus 244 gvVlNK~D~~ 253 (504)
T 2j37_W 244 SVIVTKLDGH 253 (504)
T ss_dssp CEEEECTTSC
T ss_pred EEEEeCCccc
Confidence 8999999975
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=68.86 E-value=3.7 Score=39.16 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=28.6
Q ss_pred cceeeeecCCccc-------ccccccccccCCCeEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSE 207 (334)
Q Consensus 172 ~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~ 207 (334)
..+.+||++|... .+..|..++++++++++|+|+++
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999543 34467777899999999999986
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=56.38 E-value=17 Score=29.96 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=42.4
Q ss_pred cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q psy3651 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV-IFRNVSFILFLNKTD 250 (334)
Q Consensus 172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~-~~~~~piiL~lNK~D 250 (334)
..+-++|++|.-. .........+|.+|.++..+.. . .......+.+-... ...+.++.+++|+.|
T Consensus 76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-----------~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-----------D-FSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-----------T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-----------H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 4567899988763 3344556679999999988774 3 34444444433211 123567899999998
Q ss_pred c
Q psy3651 251 L 251 (334)
Q Consensus 251 l 251 (334)
-
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 221
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=51.86 E-value=45 Score=29.59 Aligned_cols=69 Identities=9% Similarity=0.099 Sum_probs=42.9
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE-EEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI-LFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii-L~lNK~ 249 (334)
.+.+-|+|+++.-... -.......++.+|.|+..+. ..+..+..+.+.+.....-.+.+++ +|+|+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~-----------~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDF-----------DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSH-----------HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcH-----------HHHHHHHHHHHHHHHhhhcCCCceEEEEEecC
Confidence 4567799997654322 12345678999999997665 3455555555554432222445655 899999
Q ss_pred Cc
Q psy3651 250 DL 251 (334)
Q Consensus 250 Dl 251 (334)
+-
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 84
No 222
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=48.24 E-value=24 Score=29.72 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=43.5
Q ss_pred CcceeeeecCCc-ccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651 171 NIPFLFVDVGGQ-RSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq-~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~ 249 (334)
...+-++|++|. ... .....+..+|.+|.++..+.. .+......++.+-.. .+.++.+++|+.
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~-----------~~~~~~~~~~~l~~~---~~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL-----------ALDALMLTIETLQKL---GNNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH-----------HHHHHHHHHHHHHHT---CSSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch-----------hHHHHHHHHHHHHhc---cCCCEEEEEEec
Confidence 466789999887 432 233456789999999987763 444444444444331 145688999999
Q ss_pred Ccc
Q psy3651 250 DLL 252 (334)
Q Consensus 250 Dl~ 252 (334)
|-.
T Consensus 131 ~~~ 133 (209)
T 3cwq_A 131 PPY 133 (209)
T ss_dssp CCT
T ss_pred CCc
Confidence 854
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=46.73 E-value=36 Score=32.58 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=38.9
Q ss_pred eCcceeeeecCCcccccc-cc-----cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC-c-
Q psy3651 170 SNIPFLFVDVGGQRSQRR-KW-----FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV-S- 241 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~-kw-----~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~-p- 241 (334)
.+..+-|+||+|...... .. ..-...++.++||+|.+.- . ++....+.. + ... |
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g----------~---~~~~~~~~~-~----~~~~~i 240 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG----------Q---QAGIQAKAF-K----EAVGEI 240 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG----------G---GHHHHHHHH-H----TTSCSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc----------H---HHHHHHHHH-h----hcccCC
Confidence 467889999999765311 11 1112368999999997653 1 122222221 2 123 5
Q ss_pred EEEEEeCCCcc
Q psy3651 242 FILFLNKTDLL 252 (334)
Q Consensus 242 iiL~lNK~Dl~ 252 (334)
..+++||.|..
T Consensus 241 ~gvVlnK~D~~ 251 (432)
T 2v3c_C 241 GSIIVTKLDGS 251 (432)
T ss_dssp EEEEEECSSSC
T ss_pred eEEEEeCCCCc
Confidence 78999999974
No 224
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=46.65 E-value=41 Score=29.22 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE-EEEeCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI-LFLNKT 249 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii-L~lNK~ 249 (334)
.+.+-|+|++|.-........-...++.+|.|+..+.. .+.......+.+-. .+.+++ +++|+.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~-----------s~~~~~~~~~~l~~----~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQEL-----------TAVIVEKAINMAEE----TNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSC-----------CHHHHHHHHHHHHT----TTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccc-----------hHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 46678999988654211111112258999999887763 44444444444322 245666 999998
Q ss_pred Cc
Q psy3651 250 DL 251 (334)
Q Consensus 250 Dl 251 (334)
|-
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 74
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=44.33 E-value=19 Score=34.91 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=37.9
Q ss_pred CcceeeeecCCccccccccc------ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651 171 NIPFLFVDVGGQRSQRRKWF------QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL 244 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~------~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL 244 (334)
+..+-|+||+|......-.. .-...++.+++|+|.+.- ....+....|.+. -.+..+
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g----------q~a~~~a~~f~~~-------~~i~gV 244 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG----------QQAYNQALAFKEA-------TPIGSI 244 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GGHHHHHHHHHHS-------CTTEEE
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc----------hhHHHHHHHHHhh-------CCCeEE
Confidence 47788999999643221111 112257899999998763 1222222333321 124568
Q ss_pred EEeCCCcch
Q psy3651 245 FLNKTDLLA 253 (334)
Q Consensus 245 ~lNK~Dl~~ 253 (334)
++||.|...
T Consensus 245 IlTKlD~~~ 253 (443)
T 3dm5_A 245 IVTKLDGSA 253 (443)
T ss_dssp EEECCSSCS
T ss_pred EEECCCCcc
Confidence 999999753
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=43.48 E-value=31 Score=31.18 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=37.9
Q ss_pred eCcceeeeecCCccc--ccc-cc-----cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 170 SNIPFLFVDVGGQRS--QRR-KW-----FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~--~r~-kw-----~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
.+..+-++||+|... ... .. ......++.+++|+|.+.- .. ++...+.+ +. ..+
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g----------~~---~~~~~~~~-~~----~~~ 240 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG----------QK---AYDLASKF-NQ----ASK 240 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GG---HHHHHHHH-HH----TCT
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch----------HH---HHHHHHHH-Hh----hCC
Confidence 356788999999876 211 11 0123478999999987532 11 22222222 11 245
Q ss_pred -EEEEEeCCCcc
Q psy3651 242 -FILFLNKTDLL 252 (334)
Q Consensus 242 -iiL~lNK~Dl~ 252 (334)
..+++||.|..
T Consensus 241 i~gvVlnk~D~~ 252 (297)
T 1j8m_F 241 IGTIIITKMDGT 252 (297)
T ss_dssp TEEEEEECGGGC
T ss_pred CCEEEEeCCCCC
Confidence 67899999964
No 227
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=41.53 E-value=42 Score=28.25 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=41.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+-|+|+++.-.. ........+|.+|+++..+.. .+.....+.+ ..... .-..+.+++||.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~-----------s~~~~~~~~~-~~~~~--~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLN-----------SIKTGLNIEK-LAGDL--GIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHH-----------HHHHHHHHHH-HHHHH--TCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHH-----------HHHHHHHHHH-HHHHc--CCccEEEEEeCCC
Confidence 456789999876544 344556889999999987663 3333333333 22221 2245789999998
Q ss_pred c
Q psy3651 251 L 251 (334)
Q Consensus 251 l 251 (334)
-
T Consensus 195 ~ 195 (254)
T 3kjh_A 195 N 195 (254)
T ss_dssp C
T ss_pred C
Confidence 3
No 228
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=37.12 E-value=44 Score=28.09 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=41.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+-++|+++.-. .........++.+|+|+..+. ..+.......+.+-.. ....+-+++||.+
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-----------~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~ 174 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-----------SCLTDTMKVGIVLKKA---GLAILGFVLNRYG 174 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-----------HHHHHHHHHHHHHHHT---TCEEEEEEEEEET
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-----------ccHHHHHHHHHHHHhC---CCceEEEEEecCC
Confidence 35677999987654 223445678899999987665 3444444444444332 2235678999988
Q ss_pred c
Q psy3651 251 L 251 (334)
Q Consensus 251 l 251 (334)
-
T Consensus 175 ~ 175 (237)
T 1g3q_A 175 R 175 (237)
T ss_dssp S
T ss_pred c
Confidence 4
No 229
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=34.86 E-value=61 Score=27.88 Aligned_cols=71 Identities=7% Similarity=0.142 Sum_probs=43.0
Q ss_pred eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE-EEEeC
Q psy3651 170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI-LFLNK 248 (334)
Q Consensus 170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii-L~lNK 248 (334)
....+-|+|+++.-.. .....+..+|.+|.++..+..+. ..+...++.++.+... .-.+.+++ +++|+
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~--------~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~ 178 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYAL--------EGVAGLLATLEEVRAG-LNPRLRLLGILVTM 178 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHH--------HHHHHHHHHHHHHHHH-TCTTCEEEEEEEES
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHH--------HHHHHHHHHHHHHHHH-hCCCceEEEEEEEe
Confidence 3566889999886542 23344567899999998776411 2233334444443321 22456764 89999
Q ss_pred CCc
Q psy3651 249 TDL 251 (334)
Q Consensus 249 ~Dl 251 (334)
.|-
T Consensus 179 ~~~ 181 (257)
T 1wcv_1 179 YDG 181 (257)
T ss_dssp BCT
T ss_pred ECC
Confidence 885
No 230
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=32.76 E-value=80 Score=26.49 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=43.8
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+-|+|+++.-.. ........+|.+|+++..+. ..+.....+.+.+-.. ......+-+++|+.+
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-----------~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~ 183 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSL-----------QSLRRAGQLLKLCKEF-EKPISRIEIILNRAD 183 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSH-----------HHHHHHHHHHHHHHTC-SSCCSCEEEEEESTT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcH-----------HHHHHHHHHHHHHHHh-CCCccceEEEEecCC
Confidence 356779999876533 33445678999999998765 3555555555544322 122346789999998
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
--
T Consensus 184 ~~ 185 (245)
T 3ea0_A 184 TN 185 (245)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 231
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=32.28 E-value=41 Score=33.69 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=40.0
Q ss_pred ccCCCeEEEEEeCCCccchhhcc--cccccHHHHHHHHHHHHhh----cCCCCCcEEEEEeCC
Q psy3651 193 FDSVTSILFLVSSSEYDQTLVED--RRTNRLHESRNIFDTIINN----VIFRNVSFILFLNKT 249 (334)
Q Consensus 193 f~~v~~iIfv~dls~~d~~l~ed--~~~nrl~esl~lf~~i~~~----~~~~~~piiL~lNK~ 249 (334)
|.+-++++|++|+|.. .+.+| ...++|..+++....+++. ..-..+.+++|++..
T Consensus 32 ~~~ke~ivf~IDvS~S--M~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~ 92 (609)
T 1jey_A 32 YSGRDSLIFLVDASKA--MFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK 92 (609)
T ss_dssp --CEEEEEEEEECSGG--GGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred ccCceEEEEEEECCHH--HcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCC
Confidence 5677899999999985 44444 3568999999998888874 223457888888876
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.24 E-value=44 Score=32.09 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=37.3
Q ss_pred CcceeeeecCCccc--cc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651 171 NIPFLFVDVGGQRS--QR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS 241 (334)
Q Consensus 171 ~~~~~i~DvgGq~~--~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p 241 (334)
+..+-++|++|.-. .. ...... -..+.+++|+|.+.- ....+....|.+.+ .+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~-~~pd~vlLVlDa~~g----------q~a~~~a~~f~~~~-------~~ 240 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDV-LKPDDVILVIDASIG----------QKAYDLASRFHQAS-------PI 240 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHH-HCCSEEEEEEEGGGG----------GGGHHHHHHHHHHC-------SS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHh-hCCcceEEEEeCccc----------hHHHHHHHHHhccc-------CC
Confidence 56788999999643 11 111111 145899999998763 22222334443321 24
Q ss_pred EEEEEeCCCcc
Q psy3651 242 FILFLNKTDLL 252 (334)
Q Consensus 242 iiL~lNK~Dl~ 252 (334)
..+++||.|.-
T Consensus 241 ~gVIlTKlD~~ 251 (433)
T 3kl4_A 241 GSVIITKMDGT 251 (433)
T ss_dssp EEEEEECGGGC
T ss_pred cEEEEeccccc
Confidence 67899999963
No 233
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=29.20 E-value=48 Score=28.49 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=40.3
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
...+-|+|+++.-. .........+|.+|+|+..+. ..+.......+.+-.. ....+-+++|+.|
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-----------~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~ 173 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-----------SSITDGLKTKIVAERL---GTKVLGVVVNRIT 173 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-----------HHHHHHHHHHHHHHHH---TCEEEEEEEEEEC
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-----------hHHHHHHHHHHHHHhc---CCCeeEEEEccCC
Confidence 45677999987554 223344567899999987665 2344444444443332 2235668999988
Q ss_pred cc
Q psy3651 251 LL 252 (334)
Q Consensus 251 l~ 252 (334)
-.
T Consensus 174 ~~ 175 (263)
T 1hyq_A 174 TL 175 (263)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 234
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.16 E-value=41 Score=28.73 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=43.4
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc-----CCCCCcEEEE
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV-----IFRNVSFILF 245 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~-----~~~~~piiL~ 245 (334)
.+.+-++|+++.-. .........+|.+|.|+..+. ..+.....+.+.+-... ......+.++
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~-----------~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 179 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-----------SSVRDSDRILGILASKSRRAENGEEPIKEHLL 179 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH-----------HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh-----------hHHHHHHHHHHHHHHhccccccccCCcceEEE
Confidence 46678999988554 245556678999999998765 34444444444432211 1123567899
Q ss_pred EeCCCc
Q psy3651 246 LNKTDL 251 (334)
Q Consensus 246 lNK~Dl 251 (334)
+|+.|-
T Consensus 180 ~N~~~~ 185 (260)
T 3q9l_A 180 LTRYNP 185 (260)
T ss_dssp EEEECH
T ss_pred EecCCc
Confidence 999984
No 235
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=28.77 E-value=1.2e+02 Score=25.90 Aligned_cols=65 Identities=3% Similarity=0.046 Sum_probs=41.1
Q ss_pred CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250 (334)
Q Consensus 171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D 250 (334)
.+.+-|+|+++.-. ......+..+|.||.++..+.. .+.....+.+.+-.. -.+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~-----------s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW-----------AVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT-----------HHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH-----------HHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 45678999987653 2344556779999999988663 443333333333221 23467889999984
No 236
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=26.09 E-value=68 Score=31.71 Aligned_cols=51 Identities=4% Similarity=0.111 Sum_probs=37.6
Q ss_pred CeEEEEEeCCCccchhhccc-ccccHHHHHHHHHHHHhh----cCCCCCcEEEEEeCC
Q psy3651 197 TSILFLVSSSEYDQTLVEDR-RTNRLHESRNIFDTIINN----VIFRNVSFILFLNKT 249 (334)
Q Consensus 197 ~~iIfv~dls~~d~~l~ed~-~~nrl~esl~lf~~i~~~----~~~~~~piiL~lNK~ 249 (334)
.+++||+|+|.. ...+|. ..++|+.+++....+++. +.-..+.+++|+.+.
T Consensus 8 e~iv~~iDvS~S--M~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~ 63 (565)
T 1jey_B 8 AAVVLCMDVGFT--MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDG 63 (565)
T ss_dssp EEEEEEEECCGG--GGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECChH--hcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCC
Confidence 689999999985 333333 458999999999988883 333556888888764
No 237
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=23.93 E-value=85 Score=29.97 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=29.8
Q ss_pred cceeeeecCCcc--cccccc--------cccccCCCeEEEEEeCCCc
Q psy3651 172 IPFLFVDVGGQR--SQRRKW--------FQCFDSVTSILFLVSSSEY 208 (334)
Q Consensus 172 ~~~~i~DvgGq~--~~r~kw--------~~~f~~v~~iIfv~dls~~ 208 (334)
....+||.+|+. +.|..| ..++.+..+.++|+|.++.
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT 133 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 456799999994 456777 7788888999999999885
Done!