RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3651
(334 letters)
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 272 bits (697), Expect = 5e-90
Identities = 151/285 (52%), Positives = 207/285 (72%), Gaps = 16/285 (5%)
Query: 57 HDNKFGIPWQNDMNAIHAEKIFQFDNNTC------IDSRLFSTYVDELKSLWDDVAIRQA 110
K IPW ++ N +H +K+ FD +++R+F Y+ +++LW+D I+ A
Sbjct: 87 AREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNA 146
Query: 111 FERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVIS 170
++RR E+QLG+S++YF DN D++ DYIPS +DIL AR+ TKGI E+ I
Sbjct: 147 YDRRREFQLGESVKYFLDNLDKLGVP-------DYIPSQQDILLARRPTKGIHEYDFEIK 199
Query: 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230
N+PF VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+TNRL ES NIF+T
Sbjct: 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFET 259
Query: 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA 290
I+NN +F NVS ILFLNKTDLL EK++ I ++F EFEGDP ++ VQ FL+ F+
Sbjct: 260 IVNNRVFSNVSIILFLNKTDLLEEKVQVVS--IKDYFLEFEGDPHCLRDVQKFLVECFRG 317
Query: 291 VKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
+RD +++PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 318 KRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 362
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 268 bits (685), Expect = 1e-88
Identities = 121/275 (44%), Positives = 174/275 (63%), Gaps = 11/275 (4%)
Query: 59 NKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQ 118
+ IP++ + N HA+ + + D S + YVD +KSLW+D I++ ++RR EYQ
Sbjct: 63 DTLKIPYKYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLWNDPGIQECYDRRREYQ 120
Query: 119 LGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVD 178
L DS +Y+ ++ DR++ Y+P+ +D+L R T GI E+ + ++ F VD
Sbjct: 121 LSDSTKYYLNDLDRVADP-------SYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVD 173
Query: 179 VGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238
VGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE NR+ ES+ +F TII F+
Sbjct: 174 VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233
Query: 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298
N S ILFLNK DLL EK+ S + ++FPE++G +D QA + F+L F + D K
Sbjct: 234 NSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI 291
Query: 299 LFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 292 IYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 326
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 258 bits (660), Expect = 5e-84
Identities = 106/292 (36%), Positives = 152/292 (52%), Gaps = 22/292 (7%)
Query: 57 HDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSE 116
+ P + + D + + K+LW+D +R +ER +E
Sbjct: 109 AMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNE 168
Query: 117 YQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLF 176
YQL D QYF D D I + DY+PS++D+L R T GI E + + F
Sbjct: 169 YQLIDCAQYFLDKIDVIKQD-------DYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHM 221
Query: 177 VDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236
DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ + ED +TNRL E+ N+F +I NN
Sbjct: 222 FDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281
Query: 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE------------GDPQDMQAVQTFL 284
R +S ILFLNK DLLAEK+ K+ I ++FPEF G+ + + F+
Sbjct: 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFI 341
Query: 285 LNYFKAVKR---DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
+ F + D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 342 RDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 256 bits (656), Expect = 5e-84
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 22/307 (7%)
Query: 42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
+ +K+L D + + + +I + RL + +++L
Sbjct: 54 YQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETL 113
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
W D AI++ R +E Q+ D +Y +N R+S +YIP+ +D+L+AR T G
Sbjct: 114 WKDPAIQETCARGNELQVPDCTKYLMENLKRLSDI-------NYIPTKEDVLYARVRTTG 166
Query: 162 ITEFTIVISN------IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
+ E + DVGGQR++RRKW F+ VT+++F + SEYDQTL ED
Sbjct: 167 VVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFED 226
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE---G 272
+ NR+ E++ +FD ++ F SF+LFLNK D+ +K+ ++ E F +++
Sbjct: 227 EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSS 286
Query: 273 DPQDMQAVQTFLLNYFKAVKR------DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326
Q+++ F+ F+ + + + TTA+D + +K F V T+ R
Sbjct: 287 GKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR 346
Query: 327 NLRDLML 333
NL + L
Sbjct: 347 NLLEAGL 353
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 246 bits (629), Expect = 6e-80
Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 16/287 (5%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
+ +I A +L D + + + + +K LW
Sbjct: 79 SIIAIIRAMGRLKIDFGDAARADDARQLFV-------LAGAAEEGFMTAELAGVIKRLWK 131
Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R T GI
Sbjct: 132 DSGVQACFNRSREYQLNDSAAYYLNDLDRIAQP-------NYIPTQQDVLRTRVKTTGIV 184
Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED NR+HE
Sbjct: 185 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
S +FD+I NN F + S ILFLNK DL EK++ S + +PE+ G +A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP--LTICYPEYAGSNTYEEAAAYI 302
Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 330
+ KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D
Sbjct: 303 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 60.0 bits (146), Expect = 6e-11
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
+ I+ + F D+GG RR W ++ I+FLV + D RL ES+
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA--------DHE--RLLESK 112
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
D+++ + NV ++ NK D
Sbjct: 113 EELDSLMTDETIANVPILILGNKIDR 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 3e-10
Identities = 65/410 (15%), Positives = 112/410 (27%), Gaps = 159/410 (38%)
Query: 20 VRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNA-IHAEKIF 78
++ Y + R F S L G NA + A IF
Sbjct: 123 IKNYITA-----RIMAKRPFDKKS--------NSALFRAVGEG-------NAQLVA--IF 160
Query: 79 --QFDNNTCID--SRLFSTYVDELKSLWDDVA------IRQAFERRSEYQLGDSIQYFFD 128
Q + + + L+ TY + L A IR + + G +I + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 129 NWDR-------ISRRVNSP---LFQ-----------DYIPSN------------KDILHA 155
N +S ++ P + Q + P + ++ A
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 156 R--KATKGITEF-TIVISNIPFLF-VDVGGQRSQRRKWFQCFDSVTSILFLVSSSE---- 207
T F V I LF + G R + + + + ++ S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFI---GVRCY-----EAYPNTSLPPSILEDSLENNE 332
Query: 208 -----------YDQTLVED--RRTNR-LHESRNIFDTIINNVIFRNVSFILFLNKTDLLA 253
Q V+D +TN L + + +++N +N ++
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKN--LVV--------- 379
Query: 254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA--------VKRDEKKP------L 299
+ G PQ + + L KA + E+K L
Sbjct: 380 -------S----------GPPQSLYGLNLTLRKA-KAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 300 -----FH--HFTTAV-----DTENIKIVFNA------VKNTILHRNLRDL 331
FH A D + FNA V +T +LR L
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Score = 45.4 bits (107), Expect = 2e-05
Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 47/178 (26%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCF-----------DSVTSILFLVSS-S 206
+ G E +++ F SQ ++ F D T+ LV
Sbjct: 12 SHGSLEHVLLVPTASFFIA------SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 207 EYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFLNKTDLLAEKLRTSKTSIA 264
Y +LVE + + FD ++N + F N +L D+ ++A
Sbjct: 66 GYVSSLVEPSKVGQ-------FDQVLNLCLTEFENC----YLEGNDI---------HALA 105
Query: 265 EHFPEFEGDPQDMQAVQTFLLNYFKA---VKRDEKKPLFHHFTTAVDTENIKI--VFN 317
+ + + + + NY A KR K AV N ++ +F
Sbjct: 106 AKLLQ--ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Score = 35.4 bits (81), Expect = 0.025
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 61/185 (32%)
Query: 142 FQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILF 201
F++ DI HA A L + + ++ + +
Sbjct: 91 FENCYLEGNDI-HALAAK---------------LLQENDTTLVKTKELIKNY-------- 126
Query: 202 LVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS------FILFL---NKTDLL 252
++ R ++ S +FR V +F N D
Sbjct: 127 ------ITARIMAKRPFDKKSNSA----------LFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 253 AEKLR----TSKT-------SIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFH 301
E LR T AE E D + V T LN + ++ P
Sbjct: 171 EE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 302 HFTTA 306
+ +
Sbjct: 230 YLLSI 234
Score = 33.9 bits (77), Expect = 0.078
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 32/123 (26%)
Query: 147 PSNKDIL-----HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILF 201
+ +D+ H + T G + IVI+N L + GG++ +R I
Sbjct: 1640 KAAQDVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKR------------IRE 1686
Query: 202 LVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKT 261
S+ ++ + D + ++ IF I + + F ++ LL+ T T
Sbjct: 1687 NYSAMIFETIV--DGKL----KTEKIFKE-----INEHSTSYTFRSEKGLLS---ATQFT 1732
Query: 262 SIA 264
A
Sbjct: 1733 QPA 1735
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 57.3 bits (139), Expect = 4e-10
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
IVI+N FL D+GGQ S R W + + ++ +V S+ DR R+ +R
Sbjct: 59 EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST--------DRE--RISVTR 108
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
++ + R ++F NK D+
Sbjct: 109 EELYKMLAHEDLRKAGLLIFANKQDV 134
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 57.2 bits (139), Expect = 6e-10
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
T T + I NI F D+GG RR W F V I+FLV ++ D
Sbjct: 54 TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------DP-- 103
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
R E+R D + N ++V F++ NK D
Sbjct: 104 ERFDEARVELDALFNIAELKDVPFVILGNKIDA 136
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 55.7 bits (135), Expect = 2e-09
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ NI F D+GGQ R W F +++++V S+ DR R+ ++
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST--------DRD--RMGVAK 109
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
+ +++ R ++F NK DL
Sbjct: 110 HELYALLDEDELRKSLLLIFANKQDL 135
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 55.7 bits (135), Expect = 2e-09
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
IVI+N FL D+GGQ S R W + + ++ +V S+ DR R+ +R
Sbjct: 54 EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST--------DRE--RISVTR 103
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
++ + R ++F NK D+
Sbjct: 104 EELYKMLAHEDLRKAGLLIFANKQDV 129
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 54.6 bits (132), Expect = 3e-09
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ N+ D+GGQ S R W + +++F+V S+ D+ +R+ +
Sbjct: 56 TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST--------DK--DRMSTAS 105
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
++ ++ + ++F NK D
Sbjct: 106 KELHLMLQEEELQDAALLVFANKQDQ 131
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 54.1 bits (131), Expect = 4e-09
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ NI F DVGGQ R W F + ++F+V S+ DR R++E+R
Sbjct: 38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--------DR--ERVNEAR 87
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
++ R+ ++F NK DL
Sbjct: 88 EELMRMLAEDELRDAVLLVFANKQDL 113
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 54.5 bits (132), Expect = 4e-09
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
++ D+GGQR R W F++ +++++ S+ DR+ R E+
Sbjct: 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSA--------DRK--RFEETG 103
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
++ V ++F NK DL
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDL 129
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 54.2 bits (131), Expect = 5e-09
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ DVGGQ+S R W F+S ++++V S+ DR+ R+ + +
Sbjct: 56 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RMQDCQ 105
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
+++ + ++F NK DL
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 53.3 bits (129), Expect = 8e-09
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ N+ F D+GG S R W + + +++++V S DR R+ S+
Sbjct: 45 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC--------DRD--RIGISK 94
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
+ ++ R ++F NK D+
Sbjct: 95 SELVAMLEEEELRKAILVVFANKQDM 120
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 52.6 bits (127), Expect = 2e-08
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
I N+ D+GGQ R W + V++I+++V ++ D+ ++ S+
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA--------DQE--KIEASK 110
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
N +++ + + ++ NK DL
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRDL 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 52.6 bits (126), Expect = 6e-08
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ NI F DVGGQ R W F + ++F+V S+ DR R++E+R
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--------DR--ERVNEAR 252
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
++ R+ ++F NK DL
Sbjct: 253 EELMRMLAEDELRDAVLLVFANKQDL 278
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 50.8 bits (122), Expect = 7e-08
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
T+ NI F DVGGQ R W F + ++F+V S+ DR R+ ES
Sbjct: 67 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--------DRE--RVQESA 116
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
+ ++ R+ ++F NK D+
Sbjct: 117 DELQKMLQEDELRDAVLLVFANKQDM 142
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 50.3 bits (121), Expect = 1e-07
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
S++ F D+ GQ R W + +I+F++ SS DR R+ ++
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS--------DRL--RMVVAK 110
Query: 226 NIFDTIINN--VIFRNVSFILFLNKTDL 251
DT++N+ + R + + F NK DL
Sbjct: 111 EELDTLLNHPDIKHRRIPILFFANKMDL 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 51.8 bits (124), Expect = 1e-07
Identities = 50/254 (19%), Positives = 86/254 (33%), Gaps = 42/254 (16%)
Query: 14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFG---IPWQNDMN 70
+ + LY +C +K+L+ R+ + N+ G + +
Sbjct: 208 NTALHYAALYNQPDC----------------LKLLLKGRALVGTVNEAGETALDIARKKH 251
Query: 71 AIHAEKIFQFDNNTCIDSRLFSTY----VDELKSLWDDVAIRQAFERRSEYQLGDSIQYF 126
E++ + L Y E S ++ A S +S
Sbjct: 252 HKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASN 311
Query: 127 FDNWDRISRRVNSPLFQDYIPSNK-DILHARKA--------TKGITEFTIVISNIPFLFV 177
+ +S + L + K IL+ K T G T+ N+ F
Sbjct: 312 SPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 371
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
DVGGQ R W + ++F+V + DR +R+ E+R IIN+
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCA--------DR--DRIDEARQELHRIINDREM 421
Query: 238 RNVSFILFLNKTDL 251
R+ ++F NK DL
Sbjct: 422 RDAIILIFANKQDL 435
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 46.3 bits (110), Expect = 3e-06
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTS----ILFLVSSSEYDQTLVEDRRTNRL 221
VD G R K + ++F+V S+ D + +L
Sbjct: 85 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST-------VDPK--KL 135
Query: 222 HESRNIFDTIINN---VIFRNVSFILFLNKTDL 251
+ I++ + ++ NK++L
Sbjct: 136 TTTAEFLVDILSITESSCENGIDILIACNKSEL 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 45.9 bits (109), Expect = 4e-06
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTS----ILFLVSSSEYDQTLVEDRRTNRL 221
VD G R K + ++F+V S+ D + +L
Sbjct: 49 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST-------VDPK--KL 99
Query: 222 HESRNIFDTIINN---VIFRNVSFILFLNKTDL 251
+ I++ + ++ NK++L
Sbjct: 100 TTTAEFLVDILSITESSCENGIDILIACNKSEL 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 48/368 (13%), Positives = 107/368 (29%), Gaps = 117/368 (31%)
Query: 21 RLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQF 80
+ F ++L N + M+ I E
Sbjct: 63 GTLRLFWTLLSK--QEEMVQKFVE---------EVLRIN---YKFL--MSPIKTE----- 101
Query: 81 DNNTCID-SRLFSTYVDELKSLWDDV---------------AIRQAFE--RRSEY----- 117
S + Y+++ L++D +RQA R ++
Sbjct: 102 ----QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 118 QLG-------------DSIQYFFDN---WDRIS-RRVNSPLFQDYIPSNKDILHARKATK 160
LG +Q D W ++ + NSP + + + +L+ +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSP--ETVLEMLQKLLY--QIDP 211
Query: 161 GITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFL--VSSSE----YD---QT 211
T + SNI + +++ R+ + +L L V +++ ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 212 LVEDRRTNRLHESRNIFDTIINN------VIFRNVSFI------LFLNKTDLLAEKLR-- 257
L+ T R + + D + + +++ L L D + L
Sbjct: 269 LL----TTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 258 TSKTS------IAEHFPEFEGDPQ-----DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA 306
T+ IAE + + + T + + ++ E + +F +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--S 379
Query: 307 VDTENIKI 314
V + I
Sbjct: 380 VFPPSAHI 387
Score = 42.9 bits (100), Expect = 1e-04
Identities = 46/375 (12%), Positives = 115/375 (30%), Gaps = 113/375 (30%)
Query: 7 DGNC---VETR-ACVF-----HVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLH 57
+ +C + TR V + S++ + + T +L K L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMTLTPDEVKSLL----LKYLD 312
Query: 58 DNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEY 117
+P + + + ++ + + + + + WD+ ++ +
Sbjct: 313 CRPQDLPRE--VLTTNPRRL-----------SIIAESIRDGLATWDN------WKHVNCD 353
Query: 118 QLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI------SN 171
+L I+ + + R +F I + + +
Sbjct: 354 KLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAH--------IPTILLSLIWFDVIKS 402
Query: 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSI--LFLVSSSEYD------QTLVEDRRTNRLHE 223
+ V+ + S K + +S SI ++L + + +++V+ + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 224 SRNIFDTIINNVIFRNVSFI------------------LFLNKTDLLAEKLRTSKTS--- 262
S ++ ++ + S I +FL+ L +K+R T+
Sbjct: 461 SDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNA 516
Query: 263 -----------------IAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTT 305
I ++ P++E + + A+ FL + + + L
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILDFLPKIEENLICSKYTDLLR---I 570
Query: 306 AVDTENIKIVFNAVK 320
A+ E+ I A K
Sbjct: 571 ALMAEDEAIFEEAHK 585
Score = 37.9 bits (87), Expect = 0.004
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 9/112 (8%)
Query: 188 KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII---NNVIFRNVSFIL 244
F C D ++S E D ++ + +F T++ ++ + V +L
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVL 87
Query: 245 FLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK 296
+N L ++T + + + + Y V R +
Sbjct: 88 RIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQP 136
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 40.0 bits (93), Expect = 4e-04
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 17/125 (13%)
Query: 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQC---FD 194
+F P + L ++T I + I S + F D GQ F F
Sbjct: 38 KVVFHKMSP--NETLFL-ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94
Query: 195 SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254
++++++ + +D L +++F +F++K D L++
Sbjct: 95 GTGALIYVIDA--------QDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSD 144
Query: 255 KLRTS 259
+
Sbjct: 145 DHKIE 149
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 39.7 bits (93), Expect = 5e-04
Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 159 TKGITEFTIVISN---IPFLFVDVGGQRSQRRKWFQC-FDSVTSILFLVSSSEYDQTLVE 214
+ + ++N +D+ G S R + S +++F+V S+ + + + +
Sbjct: 38 SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKD 97
Query: 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFL-NKTDL 251
++ +I+++ +N +L NK D+
Sbjct: 98 VAEF--------LYQVLIDSMALKNSPSLLIACNKQDI 127
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 39.3 bits (92), Expect = 6e-04
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%)
Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
+ F V GQ V I+F+ D NRL +
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA-----------DSAPNRLRANA 116
Query: 226 NIFDTIINNVI-----FRNVSFILFLNKTDL 251
+ N+ +V ++ +NK DL
Sbjct: 117 ESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 35.4 bits (81), Expect = 0.017
Identities = 9/88 (10%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
G + S + + + V +++ ++ + + +D ++ + + F + ++
Sbjct: 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL- 166
Query: 238 RNVSFILFLNKTDL--------LAEKLR 257
+L LA +L
Sbjct: 167 -----VLSCISQGDVKRMPCFYLAHELH 189
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 31.4 bits (72), Expect = 0.25
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 22/114 (19%)
Query: 164 EFTIVISNIPFLFVDVGGQRSQ---------RRKWFQCFDSVTSILFLVSSSEYDQTLVE 214
I I +P +D G R R W Q + +LF+V + D
Sbjct: 44 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTTDAV--- 99
Query: 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFP 268
+ I+ I + + + NK D+ E L S+ +
Sbjct: 100 --------DPAEIWPEFIARLP-AKLPITVVRNKADITGETLGMSEVNGHALIR 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.9 bits (72), Expect = 0.26
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 158 ATKGITEFTIV-ISNIPFLFVDVGGQRS-----QRRKWFQCFDSVTSILFLVSSSEYDQT 211
AT + + + N+ D GGQ ++ F V ++
Sbjct: 37 ATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH---------- 86
Query: 212 LVEDRRTNRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLR 257
V D + + + IF + + + + L+K DL+ R
Sbjct: 87 -VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.5 bits (72), Expect = 0.35
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 24/91 (26%)
Query: 173 PFLFVDVGG-------QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
P VD G R + K + F + + S+ ED N E
Sbjct: 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKE-- 138
Query: 226 NIFDTIINNVIFRNVSFILFLNKTDLLAEKL 256
+ F++ +NK D+L EK
Sbjct: 139 ------------MEIPFVVVVNKIDVLGEKA 157
>4fao_E Activin receptor type-2B; TGF-beta, CTK, cystine knot,
extracellular domain, signaling protein-signaling
protein complex; HET: NAG; 3.36A {Homo sapiens}
Length = 124
Score = 30.2 bits (67), Expect = 0.45
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 7 DGNCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKV 47
D NC + + CV CCCE + N FT P
Sbjct: 65 DFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLPEAGG 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 29.6 bits (66), Expect = 1.4
Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 170 SNIPFLFVDVGGQRSQRRKWFQC---FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
+ I +++ GQ + + F SV ++++++ S + +
Sbjct: 44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS------------QDEYINAIT 91
Query: 227 IFDTIINNVIFRN--VSFILFLNKTDLLAEKLRT 258
II N ++ + ++K D L+E +
Sbjct: 92 NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV 125
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 29.7 bits (66), Expect = 1.4
Identities = 9/88 (10%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
G + S + + + V +++ ++ + + +D ++ + + F + ++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL- 251
Query: 238 RNVSFILFLNKTDL--------LAEKLR 257
+L LA +L
Sbjct: 252 -----VLSCISQGDVKRMPCFYLAHELH 274
>2h62_D ACVR2B protein; TGF-beta superfamily, ligand-receptor complex,
hormone/growth factor complex; 1.85A {Homo sapiens}
SCOP: g.7.1.3 PDB: 1nys_A 1nyu_A 2h64_C 1s4y_A
Length = 98
Score = 27.8 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 7 DGNCVETRACVFHVRLYFSVECCCERHSGNNSFT 40
D NC + + CV CCCE + N FT
Sbjct: 63 DFNCYDRQECVATEENPQVYFCCCEGNFCNERFT 96
>1bte_A Protein (activin receptor type II); serine kinase, ligand binding
domain, three-finger transferase; HET: NAG; 1.50A {Mus
musculus} SCOP: g.7.1.3 PDB: 2goo_C* 1lx5_B*
Length = 97
Score = 27.4 bits (60), Expect = 2.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 5 SKDGNCVETRACVFHVR---LYFSVECCCERHSGNNSFTSFPGMK 46
D NC + C+ +YF CCCE + N F+ FP M+
Sbjct: 56 LDDINCYDRTDCIEKKDSPEVYF---CCCEGNMCNEKFSYFPEME 97
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 28.8 bits (64), Expect = 3.0
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHF 267
T++ + + ++ +NK D +L+ SK + + F
Sbjct: 141 TVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTF 178
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA
BIND protein; 2.50A {Tetrahymena thermophila}
Length = 172
Score = 27.3 bits (60), Expect = 5.3
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 189 WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSF 242
FD +S L N + + I + + + F F
Sbjct: 89 PVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIF 143
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase,
iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB:
2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A*
2xkq_A*
Length = 165
Score = 26.6 bits (59), Expect = 8.7
Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 16/64 (25%)
Query: 247 NKTDLLAEKLRT-------------SKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR 293
++E+L T + + E ++ ++ + ++ F+ +
Sbjct: 64 GYLAEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNVTIEEQ--LAR-VVEVFRYLAA 120
Query: 294 DEKK 297
+K
Sbjct: 121 LFQK 124
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 27.1 bits (60), Expect = 9.7
Identities = 11/58 (18%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 199 ILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKL 256
I+++ SE+ +E++ ++F+ + + F+++ F++ +NK D+ E+
Sbjct: 250 IIYIFDPSEHCGFPLEEQI--------HLFEEV--HGEFKDLPFLVVINKIDVADEEN 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.415
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,034,214
Number of extensions: 291082
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 62
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.3 bits)