RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3651
(334 letters)
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 128 bits (323), Expect = 2e-36
Identities = 78/189 (41%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216
T GI E + + F DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+ + ED
Sbjct: 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91
Query: 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE----- 271
+TNRL E+ N+F +I NN R +S ILFLNK DLLAEK+ K+ I ++FPEF
Sbjct: 92 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTP 151
Query: 272 -------GDPQDMQAVQTFLLNYFKAVKR---DEKKPLFHHFTTAVDTENIKIVFNAVKN 321
G+ + + F+ + F + D + + HFT AVDTENI+ VFN ++
Sbjct: 152 EDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD 211
Query: 322 TILHRNLRD 330
I +LR
Sbjct: 212 IIQRMHLRQ 220
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 120 bits (300), Expect = 3e-33
Identities = 110/179 (61%), Positives = 143/179 (79%), Gaps = 3/179 (1%)
Query: 152 ILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQT 211
I+H + TKGI E+ I N+PF VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ
Sbjct: 24 IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQV 83
Query: 212 LVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE 271
L+EDR+TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++ I ++F EFE
Sbjct: 84 LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVS--IKDYFLEFE 141
Query: 272 GDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 329
GDP ++ VQ FL+ F+ +RD+ ++PL+HHFTTA++TENI++VF VK+TILH NL+
Sbjct: 142 GDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 113 bits (282), Expect = 1e-30
Identities = 88/173 (50%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Query: 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216
T GI E+ + ++ F VDVGGQRS+RRKW CF++VTSI+FLV+ SEYDQ LVE
Sbjct: 30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89
Query: 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQD 276
NR+ ES+ +F TII F+N S ILFLNK DLL EK+ S + ++FPE++G +D
Sbjct: 90 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRD 147
Query: 277 MQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 329
QA + F+L F + D K ++ HFT A DTENI+ VF AVK+TIL NL+
Sbjct: 148 AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 97.0 bits (240), Expect = 1e-24
Identities = 70/169 (41%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
GI E ++ F DVGGQRS+R+KW CF+ VT+I+F V+ S+YD L ED
Sbjct: 29 GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQ 278
NR+HES +FD+I NN F + S ILFLNK DL EK++ S + +PE+ G +
Sbjct: 89 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP--LTICYPEYAGSNTYEE 146
Query: 279 AVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327
A + KR + K ++ HFT A DT+N++ VF+AV + I+ N
Sbjct: 147 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 91.9 bits (228), Expect = 1e-23
Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 19/120 (15%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC------IDSRLFSTYVDE 97
GM+VL+DAR K IPW ++ N +H +K+ FD +++R+F Y+
Sbjct: 20 GMRVLVDAR------EKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 73
Query: 98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
+++LW+D I+ A++RR E+QLG+S++YF DN D++ DYIPS +DIL AR+
Sbjct: 74 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVP-------DYIPSQQDILLARR 126
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 90.0 bits (223), Expect = 6e-23
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
+ ++ A + L I + + A K+ + + + D ++ LW
Sbjct: 20 SILAIVRAMTTL------NIQYGDSARQDDARKLMHMADTI-EEGTMPKEMSDIIQRLWK 72
Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
D I+ F+R SEYQL DS Y+ + +R+ Y+P+ +D+L +R T
Sbjct: 73 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTP-------GYVPTEQDVLRSRVKT 121
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 88.8 bits (220), Expect = 2e-22
Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 15/116 (12%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
G +VL+DAR KL GIPWQ+ N H + F+N ++ F YV L +L
Sbjct: 20 GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 73
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
W D IR+AF RRSE+QLG+S++YF DN DRI + +Y PS +DIL ARK
Sbjct: 74 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQL-------NYFPSKQDILLARK 122
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 88.4 bits (219), Expect = 2e-22
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
++ ++ A S L + N N + I N D + + K+LW+
Sbjct: 15 AIETIVAAMSNL----VPPVELANPENQFRVDYILSVMNVP--DFDFPPEFYEHAKALWE 68
Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHAR 156
D +R +ER +EYQL D QYF D D I + DY+PS++D+L R
Sbjct: 69 DEGVRACYERSNEYQLIDCAQYFLDKIDVIKQD-------DYVPSDQDLLRCR 114
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 88.1 bits (218), Expect = 3e-22
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
+ +I A +L I + + A A ++F + + + +K LW
Sbjct: 20 SIIAIIRAMGRL------KIDFGDAARADDARQLFVLAGAA-EEGFMTAELAGVIKRLWK 72
Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
D ++ F R EYQL DS Y+ ++ DRI++ +YIP+ +D+L R T
Sbjct: 73 DSGVQACFNRSREYQLNDSAAYYLNDLDRIAQP-------NYIPTQQDVLRTRVKT 121
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 85.0 bits (210), Expect = 3e-21
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 15/113 (13%)
Query: 44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
M+ +I A L IP++ + N HA+ + + D S + YVD +KSLW+
Sbjct: 20 AMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLWN 71
Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHAR 156
D I++ ++RR EYQL DS +Y+ ++ DR++ Y+P+ +D+L R
Sbjct: 72 DPGIQECYDRRREYQLSDSTKYYLNDLDRVADP-------SYLPTQQDVLRVR 117
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 25.8 bits (57), Expect = 2.1
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF 303
D+L E+ ++ ++ + + DP+ + + E+K +F +
Sbjct: 18 DMLLERGVSAFSTWEKELHKIVFDPR------------YLLLNPKERKQVFDQY 59
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.1 bits (56), Expect = 5.7
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298
N IL K DL +K K + P M E
Sbjct: 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA---------------KEIGA 153
Query: 299 LFHHFTTAVDTENIKIVFNAVKNTILH 325
+ + +A+ +K VF+ +L
Sbjct: 154 VKYLECSALTQRGLKTVFDEAIRAVLC 180
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.0 bits (57), Expect = 5.9
Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 189 WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK 248
W CF + +++ + ++ F+ + N FR+ F + +
Sbjct: 90 WVTCFQESAEAILGQNAAYLGELKDKN---------EQAFEEVFQNANFRSFIFRVRVKV 140
Query: 249 TDLLAE-KLRTSKTSIAE 265
E +++ + +
Sbjct: 141 ETYNDESRIKATVMDVKP 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.137 0.415
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,244,271
Number of extensions: 57225
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 19
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)