RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3652
(394 letters)
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 540 bits (1393), Expect = 0.0
Identities = 213/475 (44%), Positives = 263/475 (55%), Gaps = 131/475 (27%)
Query: 38 GVYDGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRG 97
GVYDG W G ++ SI+P+ GE IA V+Q +DY I++++ A+ W +PAP+RG
Sbjct: 1 GVYDGE-WGGGGGVVTSISPANGEPIARVRQATPEDYESTIKAAQEAFKEWRDVPAPKRG 59
Query: 98 EIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPS 157
EIVRQIGDALR K LG+LVSLEMGKIL EG+GEVQE IDICD+AVGLSR G +PS
Sbjct: 60 EIVRQIGDALRKKKEALGKLVSLEMGKILPEGLGEVQEMIDICDFAVGLSRQLYGLTIPS 119
Query: 158 ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV----------------GVAVQ 201
ERPGH ++E WNPLGVVG+I+AFNFPVAV+GWNAAIALV +AV
Sbjct: 120 ERPGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPSPTTPLTAIAVT 179
Query: 202 SRFGKLLLELGGNNAI------------IVNEDADLNL---------------------- 227
++L + G AI + +D + L
Sbjct: 180 KIVARVLEKNGLPGAIASLVCGGADVGEALVKDPRVPLVSFTGSTAVGRQVGQAVAARFG 239
Query: 228 ----------------------AQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR------ 259
A + ++FA GTAGQRCTTTRRL +H+ D
Sbjct: 240 RSLLELGGNNAIIVMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESIYDEVLERLK 299
Query: 260 -------------PGYFVEP----------------------TIVTG------------- 271
G V P T++ G
Sbjct: 300 KAYKQVRIGDPLDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEP 359
Query: 272 ----LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLG 327
++ +V ETFAPI+YV FD+L+EAI WNNEV QGLSSSIFT D+ N F+WLG
Sbjct: 360 TIVEGLSDAPIVKEETFAPILYVLKFDTLEEAIAWNNEVPQGLSSSIFTTDLRNAFRWLG 419
Query: 328 PQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTINHG 382
P+GSDCG++NVNI T+GAEIGGAFGGEK TGGGRESGSD+WKQY RRST TIN+
Sbjct: 420 PKGSDCGIVNVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKQYMRRSTCTINYS 474
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 505 bits (1303), Expect = e-178
Identities = 210/478 (43%), Positives = 257/478 (53%), Gaps = 133/478 (27%)
Query: 38 GVYDGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRG 97
GV G + GE S NP+ GE IA V + +D + ++R A+ W +PAPRRG
Sbjct: 1 GVIGGEWVGSGGETFTSRNPANGEPIARVFPASPEDVEAAVAAAREAFKEWRKVPAPRRG 60
Query: 98 EIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPS 157
EIVRQIG+ALR K LG+LVSLEMGKIL EG+GEVQE IDICDYAVGLSR G +PS
Sbjct: 61 EIVRQIGEALRKKKEALGRLVSLEMGKILPEGLGEVQEMIDICDYAVGLSRMLYGLTIPS 120
Query: 158 ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV----------------GVAVQ 201
ERPGH L+E WNPLGVVG+I+AFNFPVAV GWNAAIALV +AV
Sbjct: 121 ERPGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTPLTAIAVT 180
Query: 202 SRFGKLLLELGGNNAII------------VNEDADLNL---------------------- 227
++L + G ++ + D + L
Sbjct: 181 KILAEVLEKNGLPPGVVNLVTGGGDGGELLVHDPRVPLVSFTGSTEVGRRVGETVARRFG 240
Query: 228 ----------------------AQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR------ 259
A + ++FA GTAGQRCTTTRRL +H+ D
Sbjct: 241 RVLLELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESVYDEFLERLV 300
Query: 260 -------------PGYFVEP----------------------TIVTG------------- 271
G V P T++TG
Sbjct: 301 KAYKQVRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYV 360
Query: 272 -------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFK 324
+ ++R+V ETFAPI+YV FDSL+EAI NN+V QGLSSSIFT+D+ F+
Sbjct: 361 EPTIVTGVTDDARIVQEETFAPILYVIKFDSLEEAIAINNDVPQGLSSSIFTEDLREAFR 420
Query: 325 WLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTINHG 382
WLGP+GSDCG++NVNIPT+GAEIGGAFGGEK TGGGRESGSD+WKQY RRST TIN+
Sbjct: 421 WLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKETGGGRESGSDAWKQYMRRSTCTINYS 478
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 266 bits (681), Expect = 1e-84
Identities = 128/257 (49%), Positives = 154/257 (59%), Gaps = 58/257 (22%)
Query: 195 LVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK 254
+V V +RFGK LLEL GNNAIIV +DAD+ LA + ++FA GTAGQRCTT RRL LH+
Sbjct: 251 MVQQTVNARFGKCLLELSGNNAIIVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHE 310
Query: 255 K----------------KIDRP---GYFVEP----------------------TIVTG-- 271
KI P G + P I+TG
Sbjct: 311 SIYDDVLEQLLTVYKQVKIGDPLEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGS 370
Query: 272 ---------------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT 316
+ ++ VV E F P++YV F +L+EAI NN V QGLSSSIFT
Sbjct: 371 AIESEGNFVQPTIVEISPDADVVKEELFGPVLYVMKFKTLEEAIEINNSVPQGLSSSIFT 430
Query: 317 KDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRST 376
++ +FKW+GP GSDCG++NVNIPTNGAEIGGAFGGEK TGGGRE+GSDSWKQY RRST
Sbjct: 431 RNPETIFKWIGPLGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRST 490
Query: 377 VTINHGKEITLAQGIKF 393
TIN+G E+ LAQGI F
Sbjct: 491 CTINYGNELPLAQGINF 507
Score = 255 bits (652), Expect = 2e-80
Identities = 108/175 (61%), Positives = 135/175 (77%), Gaps = 1/175 (0%)
Query: 22 KYPFLKELGLSGSVNPGVYDGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESS 81
+Y FL E+GLS S N G Y G W+ANG ++ S+NP+ + IA V + +++DY + +
Sbjct: 7 EYEFLSEIGLS-SRNLGCYVGGEWRANGPLVSSVNPANNQPIAEVVEASLEDYEEGLRAC 65
Query: 82 RAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICD 141
A W +PAP+RGEIVRQIGDALR KL LG+LVSLEMGKILAEGIGEVQE ID+CD
Sbjct: 66 EEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIGEVQEIIDMCD 125
Query: 142 YAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+AVGLSR +GSI+PSERP H+++E WNPLG+VG+I+AFNFP AV GWNA IALV
Sbjct: 126 FAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALV 180
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 176 bits (448), Expect = 1e-51
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 7/194 (3%)
Query: 188 GWNAAIALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTT 247
G A + A + LELGG + +IV+EDADL+ A + VF AGQ CT
Sbjct: 179 GSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQICTAA 238
Query: 248 RRLFLHKKKIDRPGYFVEP--TIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNE 305
RL +H+ D FVE T++ + + + E F P++ V F +EAI N+
Sbjct: 239 SRLLVHESIYDE---FVEKLVTVLVDVDPDMPIAQEEIFGPVLPVIRFKDEEEAIALAND 295
Query: 306 VKQGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGS 365
+ GL++ +FT+D+ + + G + +N + G FGG K +G GRE G
Sbjct: 296 TEYGLTAGVFTRDLNRALRVA--ERLRAGTVYINDSSIGVGPEAPFGGVKNSGIGREGGP 353
Query: 366 DSWKQYCRRSTVTI 379
++Y R TV I
Sbjct: 354 YGLEEYTRTKTVVI 367
Score = 116 bits (293), Expect = 2e-29
Identities = 53/123 (43%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 79 ESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFID 138
++RAA+ AWAALP R I+R+I D L + L L +LE GK + E +GEV ID
Sbjct: 1 AAARAAFKAWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVARAID 60
Query: 139 ICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV-G 197
YA GL+ G LPS PG PLGVVG+I+ +NFP+ + W A AL G
Sbjct: 61 TFRYAAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAG 120
Query: 198 VAV 200
V
Sbjct: 121 NTV 123
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 153 bits (388), Expect = 5e-42
Identities = 61/151 (40%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 46 KANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD 105
++ E I INP+TGE IA+V +D + ++RAA+ AWA P R I+ + D
Sbjct: 3 DSSSETIEVINPATGEVIATVPAATAEDVDAAVAAARAAFKAWAKTPPSERAAILLKAAD 62
Query: 106 ALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
L + L +L +LE GK LAE GEV ID Y GL+R G LPS PG +
Sbjct: 63 LLEERRDELAELETLETGKPLAEARGEVPRAIDTLRYYAGLARKLEGETLPS-DPGVLAY 121
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
PLGVVG I+ +NFP+ + W A AL
Sbjct: 122 TRREPLGVVGAITPWNFPLLLAAWKIAPALA 152
Score = 152 bits (386), Expect = 9e-42
Identities = 62/242 (25%), Positives = 96/242 (39%), Gaps = 61/242 (25%)
Query: 195 LVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK 254
+ A ++ LELGG N +IV +DADL+ A + VF G AGQ CT RL +H+
Sbjct: 220 RIAKAAAKNLKRVTLELGGKNPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHE 279
Query: 255 --------------KKI-----DRPGYFVEP----------------------TIVTG-- 271
K + P + P ++ G
Sbjct: 280 SIYDEFVERLVEAAKSLKVGDPLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGE 339
Query: 272 ----------------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIF 315
+ + R+ E F P++ V PF DEAI N+ + GL++ +F
Sbjct: 340 AGLEKGYFVEPTVLADVTPDMRIAQEEIFGPVLSVIPFKDEDEAIELANDTEYGLAAGVF 399
Query: 316 TKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRS 375
T D+ + + + G++ +N T G FGG K +G GRE G + ++Y
Sbjct: 400 TNDLERALRVA--RRLEAGMVWINDYTTGDPEALPFGGFKQSGFGREGGKEGLEEYTETK 457
Query: 376 TV 377
TV
Sbjct: 458 TV 459
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 139 bits (352), Expect = 6e-37
Identities = 78/289 (26%), Positives = 109/289 (37%), Gaps = 71/289 (24%)
Query: 45 WKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIG 104
W I INP+TGE IA+V +D + ++RAA+ AW+ L A R I+R+I
Sbjct: 9 WVDGASTIEVINPATGEVIATVPAATAEDVDAAVAAARAAFEAWSRLSAEERAAILRRIA 68
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVL 164
D L + L L++LE GK ++E GE+ D Y +R G +P+++ L
Sbjct: 69 DLLEARAEELAALITLETGKPISEARGEIARAADFIRYYAEEARRLEGETIPTDKGSKAL 128
Query: 165 LE-----------NWN----------------------------PLGVVGIISAFN---F 182
+ WN PL + +
Sbjct: 129 VRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPSEQTPLSALALAELAAEAGL 188
Query: 183 PVAVYGW-----------------NAAIALVG---------VAVQSRFGKLLLELGGNNA 216
P V AI+ G A + + LELGG +
Sbjct: 189 PAGVLNVVTGGGAEVGDALVAHPDVDAISFTGSTAVGRAIAAAAAANLKPVTLELGGKSP 248
Query: 217 IIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
IV EDADL+ A VF AGQRCT RL +H+ D FVE
Sbjct: 249 AIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDE---FVE 294
Score = 122 bits (307), Expect = 1e-30
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
GYFVEPTI+ G+ + R+ E F P++ V F +EAI N+ + GL+++IFT+D+
Sbjct: 349 GGYFVEPTILEGVTPDMRIAREEIFGPVLPVIRFKDEEEAIELANDTEYGLAAAIFTRDL 408
Query: 320 TNLFKWLGPQGSDCGLINVNIPTNGAEIGGA-FGGEKYTGGGRESGSDSWKQYCRRSTVT 378
F+ + + G++ +N T GA+I FGG K +G GRE G +++ TVT
Sbjct: 409 ARAFRVA--RRLEAGMVGINDYTGGADIAYLPFGGVKQSGLGREGGKYGLEEFTEVKTVT 466
Query: 379 INHG 382
I G
Sbjct: 467 IKLG 470
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 136 bits (345), Expect = 6e-36
Identities = 53/150 (35%), Positives = 79/150 (52%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
++GE I +NP+TGE +A+V +D R ++++ AA AW LPA R +R++ D
Sbjct: 10 SSGETIDVLNPATGEVVATVPAATAEDADRAVDAAEAAQKAWERLPAIERAAYLRKLADL 69
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
+R L +L+ E GK L+ EV+ D DY +R G I+PS+RP +
Sbjct: 70 IRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEWARRIEGEIIPSDRPNENIFI 129
Query: 167 NWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
P+GVV I +NFP + A ALV
Sbjct: 130 FKVPIGVVAGILPWNFPFFLIARKLAPALV 159
Score = 76.9 bits (190), Expect = 3e-15
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 259 RPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
GYF EPT++T + + +V E F P++ V F SLDEAI N+ + GL+S I+T++
Sbjct: 351 EKGYFYEPTVLTNVRQDMEIVQEEIFGPVLPVVKFSSLDEAIELANDSEYGLTSYIYTEN 410
Query: 319 VTNLFK 324
+ +
Sbjct: 411 LNTAMR 416
Score = 52.7 bits (127), Expect = 1e-07
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
K+ LELGG IV +DADL+LA + +V + GQ CT R+++H+ D F+E
Sbjct: 238 KVSLELGGKAPAIVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDIYDE---FME 294
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 136 bits (344), Expect = 8e-36
Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 47 ANGEIIPSINPSTGETIASVQQ-GNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD 105
A+GE S NP+ E + D +E++R A+ W +PAPRR E + + +
Sbjct: 11 ASGETFDSRNPADLEEVVGTFPLSTASDVDAAVEAAREAFPEWRKVPAPRRAEYLFRAAE 70
Query: 106 ALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
L+ + L +LV+ EMGK LAEG G+VQE ID+ YA G R G +PSE P +
Sbjct: 71 LLKKRKEELARLVTREMGKPLAEGRGDVQEAIDMAQYAAGEGRRLFGETVPSELPNKDAM 130
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
P+GVV +I+ +NFPVA+ W ALV
Sbjct: 131 TRRQPIGVVALITPWNFPVAIPSWKIFPALV 161
Score = 110 bits (277), Expect = 1e-26
Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
GYFVEPT+ T + + R+ E F P+V + SL+EAI N+ + GLSS+I+T+DV
Sbjct: 357 KGYFVEPTVFTDVTPDMRIAQEEIFGPVVALIEVSSLEEAIEIANDTEYGLSSAIYTEDV 416
Query: 320 TNLFKWLGPQGSDC--GLINVNIPTNGAEIGGAFGGEKYTGGG-RESGSDSWKQYCRRST 376
F+ D G+ VN PT GAE+ FGG K +G G RE+G+ + +
Sbjct: 417 NKAFRARR----DLEAGITYVNAPTIGAEVHLPFGGVKKSGNGHREAGTTALDAFTEWKA 472
Query: 377 VTINHG 382
V +++
Sbjct: 473 VYVDYS 478
Score = 65.1 bits (159), Expect = 2e-11
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
LE+GG N IIV +DADL+LA + +++ GT GQRCT T RL +H+ D
Sbjct: 243 LEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVYDE 293
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 131 bits (333), Expect = 3e-34
Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 37 PGVYDGTSWKANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPR 95
DG W A G+ + NPS T + + + + +D I ++ AA+ AW
Sbjct: 2 RNYIDG-EWVAGGDGEENRNPSDTSDVVGKYARASAEDADAAIAAAAAAFPAWRRTSPEA 60
Query: 96 RGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSIL 155
R +I+ + GD L + L +L++ E GK L E GEV I Y G + SG L
Sbjct: 61 RADILDKAGDELEARKEELARLLTREEGKTLPEARGEVTRAGQIFRYYAGEALRLSGETL 120
Query: 156 PSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
PS RPG + PLGVVG+I+ +NFP+A+ W A AL
Sbjct: 121 PSTRPGVEVETTREPLGVVGLITPWNFPIAIPAWKIAPALA 161
Score = 84.2 bits (209), Expect = 9e-18
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 255 KKIDRP--GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSS 312
+++ RP GY++ P + G+ ++ R+ E F P+ V DEA+ N+ + GLS+
Sbjct: 348 ERLKRPDEGYYLAPALFAGVTNDMRIAREEIFGPVAAVIRVRDYDEALAIANDTEFGLSA 407
Query: 313 SIFTKDVTNL-----FKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTG-GGRESGSD 366
I T T+L FK + + G++ VN+PT G + FGG K + G RE G
Sbjct: 408 GIVT---TSLKHATHFK----RRVEAGVVMVNLPTAGVDYHVPFGGRKGSSYGPREQGEA 460
Score = 65.7 bits (161), Expect = 1e-11
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 196 VGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKK 255
+ A +R ++ LE+GG N ++V +DADL+LA +C V + GQRCT + RL + +
Sbjct: 230 IAAAAAARGARVQLEMGGKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLIVTEG 289
Query: 256 KIDRPGYFVE 265
DR FVE
Sbjct: 290 IHDR---FVE 296
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 130 bits (329), Expect = 6e-34
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
GYFV PT++T + + + E F P++ V PF +EAI N+ + GL++ +FT+D+
Sbjct: 315 KGYFVPPTVLTDVDPDMPIAQEEIFGPVLPVIPFKDEEEAIELANDTEYGLAAGVFTRDL 374
Query: 320 TNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
+ + G + +N + GAE FGG K +G GRE G ++Y TVTI
Sbjct: 375 ERALRVAE--RLEAGTVWINDYSVGAEPSAPFGGVKQSGIGREGGPYGLEEYTEPKTVTI 432
Score = 126 bits (318), Expect = 2e-32
Identities = 69/246 (28%), Positives = 98/246 (39%), Gaps = 69/246 (28%)
Query: 78 IESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFI 137
+ ++RAA+ AWAALP R I+R++ D L + L L +LE GK + E +GEV
Sbjct: 4 VAAARAAFKAWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALGEVARAA 63
Query: 138 DICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL-V 196
D Y GL+R G ++PS PG + + PLGVVG I+ +NFP+ + W A AL
Sbjct: 64 DTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPALAA 123
Query: 197 GVAV------QS-----RFGKLLLELG----------GN-----NAIIVNEDADL----- 225
G V + +LL E G G+ A+ + D
Sbjct: 124 GNTVVLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDKISFTG 183
Query: 226 ----------NLAQQ-------------CLVF--------------ACCGTAGQRCTTTR 248
A+ +VF G AGQ CT
Sbjct: 184 STAVGKAIMRAAAENLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAGQVCTAAS 243
Query: 249 RLFLHK 254
RL +H+
Sbjct: 244 RLLVHE 249
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 110 bits (276), Expect = 1e-26
Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 76/251 (30%)
Query: 196 VGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL----- 250
V A R ++LELGG + +IV DADL A V+ AGQ C + R+
Sbjct: 212 VMAAAAERLIPVVLELGGKDPMIVLADADLERAAAAAVWGAMVNAGQTCISVERVYVHES 271
Query: 251 ----FLHK--------------------------------------------------KK 256
F+ + +
Sbjct: 272 VYDEFVARLVAKARALRPGADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALTGGAR 331
Query: 257 IDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT 316
+ G F EPT++T +PH+ V+ ETF P++ V P DEAI N+ + GLS+S+F+
Sbjct: 332 SNGGGPFYEPTVLTDVPHDMDVMREETFGPVLPVMPVADEDEAIALANDSRYGLSASVFS 391
Query: 317 KDVTN-------LFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRESGSDSW 368
+D+ L + G +++N + FGG K +GGGR G++
Sbjct: 392 RDLARAEAIARRL---------EAGAVSINDVLLTAGIPALPFGGVKDSGGGRRHGAEGL 442
Query: 369 KQYCRRSTVTI 379
+++CR +
Sbjct: 443 REFCRPKAIAR 453
Score = 76.1 bits (188), Expect = 4e-15
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
NP+TGE + V + + + +RAA AWAAL R + + + AL L
Sbjct: 1 RNPATGEVLGEVPVTDPAEVAAAVARARAAQRAWAALGVEGRAQRLLRWKRALADHADEL 60
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSIL-PSERPGHVLLEN------ 167
+L+ E GK A+ EV ++ D+A + +L P + P +L+ N
Sbjct: 61 AELLHAETGKPRADAGLEVLLALEAIDWAARN----APRVLAPRKVPTGLLMPNKKATVE 116
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIALV-GVAV 200
+ P GVVG+IS +N+P+ + AL G AV
Sbjct: 117 YRPYGVVGVISPWNYPLLTPMGDIIPALAAGNAV 150
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 105 bits (265), Expect = 5e-25
Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
INP+TGE I V D I+++ AA+ W A R I+R+ D +R + L
Sbjct: 2 INPATGEVIGEVPDAGAADADAAIDAAAAAFKTWRKTTARERAAILRRWADLIRERAEDL 61
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGL--------SRTYSGSILPSERPGHVLLE 166
+L++LE GK LAE GEV DYA R Y G +PS PG +L
Sbjct: 62 ARLLTLEQGKPLAEARGEV-------DYAASFLEWFAEEARRIY-GRTIPSPAPGKRILV 113
Query: 167 NWNPLGVVGIISAFNFPVA 185
P+GVV I+ +NFP A
Sbjct: 114 IKQPVGVVAAITPWNFPAA 132
Score = 91.3 bits (228), Expect = 4e-20
Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K++ GYF EPT++T + + +++ ETF P+ + PFD+ DE I N+ GL++ +
Sbjct: 330 KRLGLGGYFYEPTVLTDVTDDMLIMNEETFGPVAPIIPFDTEDEVIARANDTPYGLAAYV 389
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA---FGGEKYTGGGRESGS 365
FT+D+ ++ + + + G++ +N I A FGG K +G GRE G
Sbjct: 390 FTRDLARAWR-VA-EALEAGMVGINTGL----ISDAEAPFGGVKESGLGREGGK 437
Score = 49.4 bits (119), Expect = 2e-06
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
++ LELGGN IV +DADL+ A + + AGQ C R+++H+ D FVE
Sbjct: 222 RVSLELGGNAPFIVFDDADLDKAVDGAIASKFRNAGQTCVCANRIYVHESIYDE---FVE 278
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 104 bits (261), Expect = 1e-24
Identities = 67/243 (27%), Positives = 99/243 (40%), Gaps = 67/243 (27%)
Query: 198 VAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRR-------- 249
+A + + + LLELGGN+ +IV +DADL A V +GQRCT +R
Sbjct: 215 IAATAGYKRQLLELGGNDPLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESVA 274
Query: 250 -----LFLHKKK-----------------IDRP--------------------------G 261
L + K ID G
Sbjct: 275 DEFVDLLVEKSAALVVGDPMDPATDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQRQG 334
Query: 262 YFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD--- 318
PT++ +P ++ +V ETF P+ V LDEAI +N GLSS + T D
Sbjct: 335 ALYAPTVLDHVPPDAELVTEETFGPVAPVIRVKDLDEAIAISNSTAYGLSSGVCTNDLDT 394
Query: 319 VTNLFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTG-GGRESGSDSWKQYCRRST 376
+ L + L D G +NVN +P +E+ FGG K +G GG+E ++ K+ T
Sbjct: 395 IKRLVERL-----DVGTVNVNEVPGFRSEL-SPFGGVKDSGLGGKEGVREAMKEMTNVKT 448
Query: 377 VTI 379
++
Sbjct: 449 YSL 451
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 103 bits (259), Expect = 2e-24
Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 62/236 (26%)
Query: 196 VGVAVQSRFGKLL----LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
VG + G+ L LELGGNN +IV +DADL+LA F GQ C R+
Sbjct: 190 VGRHIGELAGRHLKKVALELGGNNPLIVLDDADLDLAVSAAAFGAFLHQGQICMAAGRIL 249
Query: 252 LHK-----------------------------------KKIDRPGYFVE------PTIVT 270
+H+ +++DR VE ++T
Sbjct: 250 VHESVYDEFVEKLVAKAKALPVGDPRDPDTVIGPLINERQVDRVHAIVEDAVAAGARLLT 309
Query: 271 GLPHNSRVV---------------HRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIF 315
G + E F P+ V PFD +EA+ N+ + GLS+++F
Sbjct: 310 GGTYEGLFYQPTVLSDVTPDMPIFREEIFGPVAPVIPFDDDEEAVELANDTEYGLSAAVF 369
Query: 316 TKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQY 371
T+D+ + + G++++N T E FGG K +GGGR G S +++
Sbjct: 370 TRDLERAMA-FAER-LETGMVHINDQTVNDEPHVPFGGVKASGGGRFGGPASLEEF 423
Score = 77.2 bits (191), Expect = 2e-15
Identities = 42/112 (37%), Positives = 55/112 (49%)
Query: 73 DYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGE 132
D R ++ AA AWAA P R I+R+ + L + + + E G + E
Sbjct: 1 DVDRAYAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAFE 60
Query: 133 VQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 184
V I I A GL R G ILPS+ PG + PLGVVG+IS FNFP+
Sbjct: 61 VGAAIAILREAAGLPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPL 112
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 103 bits (260), Expect = 3e-24
Identities = 67/267 (25%), Positives = 103/267 (38%), Gaps = 72/267 (26%)
Query: 48 NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
E + NP+TGE IA V ++ + +++AA+ AW+A P +R +++ + L
Sbjct: 14 TTEWLDVYNPATGEVIARVPLATAEEVDAAVAAAKAAFPAWSATPVLKRQQVMFKFRQLL 73
Query: 108 RHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN 167
L L +L++LE GK LA+ G+V +++ ++A + G L + G
Sbjct: 74 EENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSIPHLLKGEYLENVARGIDTYSY 133
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIALV--------------GVAVQSRFGKLLLELG- 212
PLGVV I+ FNFP + W +A+ G A+ R +LL E G
Sbjct: 134 RQPLGVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVPGAAM--RLAELLQEAGL 191
Query: 213 ---------GN----NAIIVNED------------------------------------- 222
G NA++ + D
Sbjct: 192 PDGVLNVVHGGKEAVNALLDHPDIKAVSFVGSTPVGEYIYERAAANGKRVQALGGAKNHA 251
Query: 223 -----ADLNLAQQCLVFACCGTAGQRC 244
ADL LV A G AGQRC
Sbjct: 252 VVMPDADLEQTANALVGAAFGAAGQRC 278
Score = 51.4 bits (124), Expect = 4e-07
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G FV PTI+ + + ++ E F P++ + D+LDEAI N G ++IFT+
Sbjct: 358 GNFVGPTILDNVTPDMKIYKEEIFGPVLSIVRVDTLDEAIAIINANPYGNGAAIFTRSGA 417
Query: 321 NLFKWLGPQGSDCGLINVNIP 341
K+ + D G++ +N+P
Sbjct: 418 AARKFQ--REVDAGMVGINVP 436
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 101 bits (254), Expect = 1e-23
Identities = 97/455 (21%), Positives = 154/455 (33%), Gaps = 135/455 (29%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
NP GE I V + D + ++RA ALP R I+ + D L+ +
Sbjct: 4 HNPYDGEVIGKVPADDRADAEEALATARAGAENRRALPPHERMAILERAADLLKKRAEEF 63
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSE-------RPGHVLLEN 167
++++ E GK + + EV ID A + G +P + R + E
Sbjct: 64 AKIIACEGGKPIKDARVEVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTIRE- 122
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIAL-VGVAV-----------QSRFGKLLLELG--- 212
P+GVV I+ FNFP+ + A A+ G V K+L+E G
Sbjct: 123 --PVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPE 180
Query: 213 ------------GNNAIIVNED-------------------------------------- 222
+A +E
Sbjct: 181 GVLQVVTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANAGGKRIALELGGNAPVIVD 240
Query: 223 --ADLNLAQQCLVFACCGTAGQRCTTTRRLFLH----------------KKKIDRP---G 261
ADL+ A + L AGQ C + +R+++H K K+ P
Sbjct: 241 RDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELYDEFIEAFVAAVKKLKVGDPLDED 300
Query: 262 YFVEP----------------------TIVTG---------------LPHNSRVVHRETF 284
V P ++ G +P ++++ ETF
Sbjct: 301 TDVGPLISEEAAERVERWVEEAVEAGARLLCGGERDGALFKPTVLEDVPRDTKLSTEETF 360
Query: 285 APIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNG 344
P+V + +D +EAI N GL + IFT+D+ FK + + G + VN +
Sbjct: 361 GPVVPIIRYDDFEEAIRIANSTDYGLQAGIFTRDLNVAFK--AAEKLEVGGVMVNDSSAF 418
Query: 345 AEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
FGG K +G GRE + ++ TV I
Sbjct: 419 RTDWMPFGGVKESGVGREGVPYAMEEMTEEKTVVI 453
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 100 bits (252), Expect = 2e-23
Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 62/226 (27%)
Query: 196 VGVAVQSRFG--KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH 253
VG A+ + G K+ LELG N A+IV+ DADL A + V AGQ C + +R+F+H
Sbjct: 214 VGEAIARKAGLKKVTLELGSNAAVIVDADADLEKAVERCVSGAFANAGQVCISVQRIFVH 273
Query: 254 KKKIDR-------------------PGYFVEP----------------------TIVTG- 271
+ D V P ++TG
Sbjct: 274 EDIYDEFLERFVAATKKLVVGDPLDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGG 333
Query: 272 --------------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK 317
+P + +VV E FAP+V + PFD+LDEAI N+ GL + +FT
Sbjct: 334 KRDGAILEPTVLTDVPPDMKVVCEEVFAPVVSLNPFDTLDEAIAMANDSPYGLQAGVFTN 393
Query: 318 DVTNLFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRE 362
D+ K + + G + +N T + +GG K +G GRE
Sbjct: 394 DLQKALKAA--RELEVGGVMINDSSTFRVD-HMPYGGVKESGTGRE 436
Score = 78.4 bits (194), Expect = 7e-16
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 52 IPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKL 111
I I+P GE I V + +D + I +++ +LPA R EI+ + L +
Sbjct: 1 IEVISPYDGEVIGRVPVASEEDVEKAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERR 60
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSE-------RPGHVL 164
+ ++LE GK + + EV I+ + ++ +G +P + R G +
Sbjct: 61 EEFARTIALEAGKPIKDARKEVDRAIETLRLSAEEAKRLAGETIPFDASPGGEGRIGFTI 120
Query: 165 LENWNPLGVVGIISAFNFPV 184
E P+GVV I+ FNFP+
Sbjct: 121 RE---PIGVVAAITPFNFPL 137
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 99.1 bits (247), Expect = 9e-23
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ G INP+ GE IA+V +D R I ++R A WAA+ RG I+R+ D
Sbjct: 10 SAGTTREIINPANGEVIATVHAATPEDVERAIAAARRAQGEWAAMSPMERGRILRRAADL 69
Query: 107 LRHKLVPLGQLVSLEMGKILAEGI-GEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
+R + L +L +L+ GK L E I ++ D+ ++ GL+ +G I+P P
Sbjct: 70 IRERNEELAKLETLDTGKTLQETIVADMDSGADVFEFFAGLAPALNGEIIPLGGPSFAYT 129
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
PLGV I A+N+P+ + W A AL
Sbjct: 130 IR-EPLGVCVGIGAWNYPLQIASWKIAPALA 159
Score = 65.6 bits (160), Expect = 1e-11
Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 66/229 (28%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTT------------------- 246
+ +ELGG + +IV +DADL A + +AGQ C+
Sbjct: 238 HVTMELGGKSPLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVHKKIKERFLARLV 297
Query: 247 --TRRLFL-----------------HKKKI------------------DRP-------GY 262
T R+ L H+ K+ RP G+
Sbjct: 298 ERTERIKLGDPFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGLQNGF 357
Query: 263 FVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNL 322
FVEPT+ + +V E F P++ V F DE I N+ + GL+ +FT D+
Sbjct: 358 FVEPTVFADCTDDMTIVREEIFGPVMTVLTFSDEDEVIARANDTEYGLAGGVFTADLGRA 417
Query: 323 FKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQY 371
+ + IN AE FGG K +G GRE+G + Y
Sbjct: 418 HRVADQLEAGTVWINTYNLYP-AEA--PFGGYKQSGIGRENGKAALAHY 463
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 97.4 bits (243), Expect = 4e-22
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
INP+TG+ I V + D R + +++AA+ WAA PA RG+++ +I DAL + L
Sbjct: 2 INPATGQVIGEVPRSRAADVDRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEEL 61
Query: 115 GQLVSLEMGKIL-AEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGV 173
+L++LE G L + E D+ Y GL+ G LP P + PLGV
Sbjct: 62 ARLLALETGNALRTQARPEAAVLADLFRYFGGLAGELKGETLPF-GPDVLTYTVREPLGV 120
Query: 174 VGIISAFNFPVAVYGWNAAIALV 196
VG I +N P+ + A ALV
Sbjct: 121 VGAILPWNAPLMLAALKIAPALV 143
Score = 74.3 bits (183), Expect = 1e-14
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
G+FV+PTI +G+ + R+ E F P++ P+ DE I N+ GL++ ++T+D+
Sbjct: 340 DGFFVQPTIFSGVDNEWRLAREEIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWTRDL 399
Query: 320 TNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSW-KQYCRRSTVT 378
+ + G + VN G + G ++GG K +G GRE+ + + + ++ TV
Sbjct: 400 GRALR--AAHALEAGWVQVN-QGGGQQPGQSYGGFKQSGLGREASLEGMLEHFTQKKTVN 456
Query: 379 I 379
I
Sbjct: 457 I 457
Score = 40.8 bits (96), Expect = 9e-04
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGT-AGQRCTTTRRLFLHKKKID 258
LELGG + +IV DADL+ A + T GQ CT RLF+H+ D
Sbjct: 224 LELGGKSPMIVFPDADLDDAVDGAIAGMRFTRQGQSCTAGSRLFVHEDIYD 274
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 96.9 bits (242), Expect = 7e-22
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 49 GEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
E I S NP+ E + +VQ+ ++ ++++RAA+ W P R ++ + L
Sbjct: 45 EEKIESRNPADPSEVLGTVQKATKEEAEAAVQAARAAFPTWRRTPPEERARLLLRAAALL 104
Query: 108 RHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN 167
R + L + LE+GK AE +V E ID +Y G +
Sbjct: 105 RRRRFELAAWMVLEVGKNWAEADADVAEAIDFLEYYAREMLRLRGFPVEMVPGEDNRYV- 163
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ PLGV +IS +NFP+A+ ALV
Sbjct: 164 YRPLGVGAVISPWNFPLAILAGMTTAALV 192
Score = 81.5 bits (202), Expect = 9e-17
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 68/244 (27%)
Query: 201 QSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR- 259
Q +++ E+GG NAIIV+EDADL+ A + +V + G GQ+C+ R+ +H+ D
Sbjct: 272 QKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVIVHESVYDEF 331
Query: 260 ------------------PGYFVEPTI--------------------------------- 268
P ++ P I
Sbjct: 332 LERLVERTKALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIGKSEGRLLLGGEVLELAAE 391
Query: 269 --------VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
+P + R+ E F P++ V DEA+ N+ + GL+ +F++
Sbjct: 392 GYFVQPTIFADVPPDHRLAQEEIFGPVLAVIKAKDFDEALEIANDTEYGLTGGVFSRSPE 451
Query: 321 NL--FKWLGPQGSDCGLINVNIPTNGAEIG-GAFGGEKYTG-GGRESGSDSWKQYCRRST 376
+L + + + G + N GA +G FGG K +G G + G D Q+ + T
Sbjct: 452 HLERAR----REFEVGNLYANRKITGALVGRQPFGGFKMSGTGSKAGGPDYLLQFMQPKT 507
Query: 377 VTIN 380
VT N
Sbjct: 508 VTEN 511
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 95.3 bits (238), Expect = 2e-21
Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIGDALRHKL 111
SINP+TGE A V + + D R + ++RAA+ AW L RG+++R++ D +
Sbjct: 1 SINPATGEPWARVPEASAADVDRAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANA 60
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPL 171
L +L + + GK++ E +V+ + Y GL+ G+++P ++ ++ PL
Sbjct: 61 EELAELETRDNGKLIRETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKGDYLNFTRREPL 120
Query: 172 GVVGIISAFNFPVAVYGWNAAIAL 195
GVV I+ +N P+ + A AL
Sbjct: 121 GVVAAITPWNSPLLLLAKKLAPAL 144
Score = 81.8 bits (203), Expect = 5e-17
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYF EPTI+ + ++ R+ E F P++ V PFD +EAI N+ + GL++ I+T+D+
Sbjct: 342 GYFFEPTILADVTNDMRIAQEEVFGPVLSVIPFDDEEEAIALANDSEYGLAAGIWTRDLA 401
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGA-EIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
+ + + G + VN T A FGG K +G GRE+G ++ ++Y + +V I
Sbjct: 402 RAHRV--ARAIEAGTVWVN--TYRALSPSSPFGGFKDSGIGRENGIEAIREYTQTKSVWI 457
Score = 52.2 bits (126), Expect = 3e-07
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 184 VAVYGWNAAIALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQR 243
+A G + A + LELGG + IV +DADL+ A +V AGQ
Sbjct: 202 IAFTGGTETGRHIARAAAENLAPVTLELGGKSPNIVFDDADLDAAVNGVVAGIFAAAGQT 261
Query: 244 CTTTRRLFLHKKKIDRPGYFVE------PTIVTGLPHNSRV 278
C RL + + D FVE I G P +
Sbjct: 262 CVAGSRLLVQRSIYDE---FVERLVARARAIRVGDPLDPET 299
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 94.4 bits (236), Expect = 3e-21
Identities = 59/236 (25%), Positives = 83/236 (35%), Gaps = 80/236 (33%)
Query: 197 GVAVQSRFGKLL----LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL-- 250
G AV + GK L LELGG++ IV +DADL+ A + V AGQ C +R
Sbjct: 187 GRAVAAEAGKNLKKSVLELGGSDPFIVLDDADLDKAVKTAVKGRLQNAGQSCIAAKRFIV 246
Query: 251 -------FLHK------------------------------------------------- 254
FL K
Sbjct: 247 HEDVYDEFLEKFVEAMAALKVGDPMDEDTDLGPLARKDLRDELHEQVEEAVAAGATLLLG 306
Query: 255 -KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSS 313
K+ D PG F PT++T + E F P+ V +EAI N+ GL S
Sbjct: 307 GKRPDGPGAFYPPTVLTDVTPGMPAYDEELFGPVAAVIKVKDEEEAIALANDSPFGLGGS 366
Query: 314 IFTKDVTNLFKWLGPQGS------DCGLINVNIPT-NGAEIGGAFGGEKYTGGGRE 362
+FT D+ + + G++ +N + + FGG K +G GRE
Sbjct: 367 VFTTDLE--------RAERVARRLEAGMVFINGMVKSDPRL--PFGGVKRSGYGRE 412
Score = 69.0 bits (170), Expect = 8e-13
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 78 IESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFI 137
++ + AA+ AW R ++R++ D LR + L +L++LEMGK +AE EV++
Sbjct: 5 LDRAHAAFLAWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARAEVEKCA 64
Query: 138 DICDY-----AVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFP 183
IC Y L+ I +V E PLGVV I +NFP
Sbjct: 65 WICRYYAENAEAFLADEP---IETDAGKAYVRYE---PLGVVLGIMPWNFP 109
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 94.7 bits (236), Expect = 3e-21
Identities = 60/232 (25%), Positives = 90/232 (38%), Gaps = 62/232 (26%)
Query: 196 VGVAVQSRFGKLL----LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
VG + + G+ L LELGG N +IV DADL+ A + F GQ C + R+
Sbjct: 210 VGREIAEKAGRHLKKITLELGGKNPLIVLADADLDYAVRAAAFGAFMHQGQICMSASRII 269
Query: 252 LHKKKIDR-------------------PGYFVEPTI------------------------ 268
+ + D P + P I
Sbjct: 270 VEEPVYDEFVKKFVARASKLKVGDPRDPDTVIGPLISPRQVERIKRQVEDAVAKGAKLLT 329
Query: 269 -------------VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIF 315
+T + + R+ ETF P+ V P +EA+ N+ + GLS++I
Sbjct: 330 GGKYDGNFYQPTVLTDVTPDMRIFREETFGPVTSVIPAKDAEEALELANDTEYGLSAAIL 389
Query: 316 TKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDS 367
T D+ FK + + G++++N PT E FGG K +G GRE G S
Sbjct: 390 TNDLQRAFKL--AERLESGMVHINDPTILDEAHVPFGGVKASGFGREGGEWS 439
Score = 87.4 bits (217), Expect = 8e-19
Identities = 41/132 (31%), Positives = 61/132 (46%)
Query: 53 PSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLV 112
+NP+ G A V G+ QD R I ++ A+ AWAA R I+ + + + +
Sbjct: 2 DDLNPADGSVYARVAVGSRQDAERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRAD 61
Query: 113 PLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLG 172
L L+ E G + E ++ A G R G LPS+ PG V + PLG
Sbjct: 62 DLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGECRRVRGETLPSDSPGTVSMSVRRPLG 121
Query: 173 VVGIISAFNFPV 184
VV I+ FN+P+
Sbjct: 122 VVAGITPFNYPL 133
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 93.7 bits (234), Expect = 5e-21
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 258 DRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK 317
D PGYF+ PTIV P SR+V E F P++ V + DE I N+ + GL +S+++
Sbjct: 328 DGPGYFIPPTIVDDPPEGSRIVDEEQFGPVLPVLKYSDEDEVIARANDSEYGLGASVWSS 387
Query: 318 DVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA--FGGEKYTGGGRESGSDSWKQYCRRS 375
D+ + + + G + +N + FGG K +G G E G + K+Y +
Sbjct: 388 DLERAEA-VARR-LEAGTVWIN---THGALDPDAPFGGHKQSGIGVEFGIEGLKEYTQTQ 442
Query: 376 TVTI 379
+ I
Sbjct: 443 VINI 446
Score = 93.4 bits (233), Expect = 8e-21
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
INP+TGE AS + + + +++AA+ W+A P R + I DA+ L
Sbjct: 2 INPATGEVFASAPVASEAQLDQAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEEL 61
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSER----PGHVLLENWNP 170
+L++LE GK LAE EV AV R + LP E + P
Sbjct: 62 ARLLTLEQGKPLAEAQFEV-------GGAVAWLRYTASLDLPDEVIEDDDTRRVELRRKP 114
Query: 171 LGVVGIISAFNFPVAVYGWNAAIALV 196
LGVV I +NFP+ + W A AL+
Sbjct: 115 LGVVAAIVPWNFPLLLAAWKIAPALL 140
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 94.0 bits (234), Expect = 6e-21
Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 8/159 (5%)
Query: 42 GTSWKA--NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEI 99
G W +G+ P NP+TGE IA+V + + I S+ A+ +W+ L A R +I
Sbjct: 30 GGKWTDAYDGKTFPVYNPATGEVIANVPCMGRAETNDAIASAHDAFPSWSKLTASERSKI 89
Query: 100 VRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEV---QEFIDICDYAVGLSRTYSGSILP 156
+R+ D + L QL++LE GK L E IGEV F++ +A R Y G I+P
Sbjct: 90 LRRWYDLIIANKEDLAQLMTLEQGKPLKEAIGEVAYGASFLEY--FAEEAKRVY-GDIIP 146
Query: 157 SERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
S P LL P+GVVG I+ +NFP+A+ AL
Sbjct: 147 SPFPDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPAL 185
Score = 69.7 bits (171), Expect = 6e-13
Identities = 53/228 (23%), Positives = 84/228 (36%), Gaps = 68/228 (29%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID------- 258
++ LELGGN IV +DADL++A + + + +GQ C R+ + + D
Sbjct: 265 RVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQTCVCANRILVQEGIYDKFAEAFS 324
Query: 259 ------------RPGYFVEPTI-----------------------VTGLPHN-------- 275
G P I + G H+
Sbjct: 325 KAVQKLVVGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEP 384
Query: 276 ---------SRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWL 326
+ E F P+ + F + +EAI N+ + GL++ IFT+D+ W
Sbjct: 385 TVLGDVTEDMLIFREEVFGPVAPLTRFKTEEEAIAIANDTEAGLAAYIFTRDLQRA--WR 442
Query: 327 GPQGSDCGLINVN---IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQY 371
+ + G++ VN I T A FGG K +G GRE +Y
Sbjct: 443 VSEALEYGIVGVNEGLISTEVA----PFGGVKQSGLGREGSKYGIDEY 486
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 91.7 bits (228), Expect = 3e-20
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVP 113
++NP+TGE IA V Q + +D + ++RAA+ AW+A+ RG I+ ++ + +
Sbjct: 1 TLNPATGELIARVAQASAEDVDAAVAAARAAFEAWSAMDPAERGRILWRLAELILANADE 60
Query: 114 LGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERP--GHVLLENWNP 170
L +L SL+ GK + +V D Y G + G ++P P + + E P
Sbjct: 61 LARLESLDTGKPIRAARRLDVPRAADTFRYYAGWADKIEGEVIPVRGPFLNYTVRE---P 117
Query: 171 LGVVGIISAFNFPVAVYGWNAAIAL-VGVAV-----------QSRFGKLLLELG 212
+GVVG I +NFP+ W A AL G V R +L+ E G
Sbjct: 118 VGVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAG 171
Score = 77.1 bits (190), Expect = 2e-15
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K+ G+FVEPTI +P R+ E F P+V V F +EA+ N + GL++ +
Sbjct: 330 KRPGARGFFVEPTIFAAVPPEMRIAQEEIFGPVVSVMRFRDEEEALRIANGTEYGLAAGV 389
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
+T+D+ + G + +N N + G FGG K +G GRE G ++ +Y
Sbjct: 390 WTRDLGRAHRV--AAALKAGTVWINT-YNRFDPGSPFGGYKQSGFGREMGREALDEYTEV 446
Query: 375 STVTIN 380
+V +N
Sbjct: 447 KSVWVN 452
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 90.8 bits (226), Expect = 6e-20
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 62/226 (27%)
Query: 196 VGVAVQSRFGK--LLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH 253
VG +++R GK ++LELGGN A+IV+ DADL+ A Q ++F AGQ C + +R+ +H
Sbjct: 213 VGWDLKARAGKKKVVLELGGNAAVIVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVLVH 272
Query: 254 KKKIDR-------------------PGYFVEP---------------------------- 266
+ D V P
Sbjct: 273 RSVYDEFKSRLVARVKALKTGDPKDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGG 332
Query: 267 ---------TIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK 317
TI+ +P + V E F P+V V P+D DEA+ N+ K GL + +FT+
Sbjct: 333 KRDGALLEPTILEDVPPDMEVNCEEVFGPVVTVEPYDDFDEALAAVNDSKFGLQAGVFTR 392
Query: 318 DVTNLFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRE 362
D+ + + G + +N +PT + +GG K +G GRE
Sbjct: 393 DLEKALRAWD--ELEVGGVVINDVPTFRVD-HMPYGGVKDSGIGRE 435
Score = 76.1 bits (188), Expect = 5e-15
Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 52 IPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKL 111
+ NP TGE +A V D I ++ A+ ALPA RR I+ L +
Sbjct: 1 LEVTNPYTGEVVARVALAGPDDIEEAIAAAVKAFRPMRALPAHRRAAILLHCVARLEERF 60
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILP---SER-PGHVLLEN 167
L + + LE GK + + GEV ID A + G +LP S R G L
Sbjct: 61 EELAETIVLEAGKPIKDARGEVARAIDTFRIAAEEATRIYGEVLPLDISARGEGRQGLVR 120
Query: 168 WNPLGVVGIISAFNFP 183
P+G V I+ FNFP
Sbjct: 121 RFPIGPVSAITPFNFP 136
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 90.4 bits (225), Expect = 7e-20
Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 62/222 (27%)
Query: 203 RFGKLL-LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK------- 254
R GK+L LE+GGNN ++V + AD++ A +V + TAGQRCT RRL +
Sbjct: 198 RPGKILALEMGGNNPLVVWDVADIDAAAYLIVQSAFLTAGQRCTCARRLIVPDGAVGDAF 257
Query: 255 --------KKIDRPGYFVEPTIVTGLPHNSRVVHRETFA--------------------- 285
K++ EP + L +
Sbjct: 258 LERLVEAAKRLRIGAPDAEPPFMGPLIIAAAAARYLLAQQDLLALGGEPLLAMERLVAGT 317
Query: 286 -----------------------PIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNL 322
P++ V+ +D DEAI N + GLS+ + + D L
Sbjct: 318 AFLSPGIIDVTDAADVPDEEIFGPLLQVYRYDDFDEAIALANATRFGLSAGLLSDD-EAL 376
Query: 323 FKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
F+ G++N N PT GA FGG +G R S
Sbjct: 377 FERFL-ARIRAGIVNWNRPTTGASSTAPFGGVGLSGNHRPSA 417
Score = 58.8 bits (143), Expect = 2e-09
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 78 IESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFI 137
+ ++RAA+ WAAL R I+R+ + L+ L +L+S E GK L E EV
Sbjct: 6 VAAARAAFPGWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQTEVAAMA 65
Query: 138 DICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFP 183
D ++ +G + + P GV+ + FNFP
Sbjct: 66 GKIDISIKAYHERTGE-RATPMAQGRAVLRHRPHGVMAVFGPFNFP 110
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 88.5 bits (220), Expect = 4e-19
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 11/156 (7%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAA--WAALPAPRRGEIVRQIG 104
A+G+ INP+ GE IA+V +G +D R I ++R A+ + W LPA R ++ +I
Sbjct: 10 ASGKTRDIINPANGEVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQERAALLFRIA 69
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHV- 163
D +R L +L +L GK L E ++ + + Y GL+ +G + P HV
Sbjct: 70 DKIREDAEELARLETLNTGKTLRESEIDIDDVANCFRYYAGLATKETGEVYDV--PPHVI 127
Query: 164 ---LLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ E P+GV G+I+ +N+P+ W A AL
Sbjct: 128 SRTVRE---PVGVCGLITPWNYPLLQAAWKLAPALA 160
Score = 62.7 bits (153), Expect = 1e-10
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYFVEPTI + R+V E F P++ V FD+ +EAI N+ GL+ +++TKD+
Sbjct: 357 GYFVEPTIFDDVDRTMRIVQEEIFGPVLTVERFDTEEEAIRLANDTPYGLAGAVWTKDIA 416
Query: 321 NLFK----------WLGPQGSDCGLIN-VNIPTNGAEIGGAFGGEKYTGGGRESGSDSWK 369
+ W IN + A +GG K +G GRE G +
Sbjct: 417 RANRVARRLRAGTVW----------INDYHPYFAEAP----WGGYKQSGIGRELGPTGLE 462
Query: 370 QYCRRSTVTIN 380
+Y + IN
Sbjct: 463 EYQETKHININ 473
Score = 36.5 bits (85), Expect = 0.021
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 204 FGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF----LHKKKIDR 259
K+ LELGG N IV DAD A + AGQ C+ RL +H K +
Sbjct: 237 VKKVALELGGKNPNIVFADADFETAVDQALNGVFFNAGQVCSAGSRLLVEESIHDKFVAA 296
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 88.1 bits (219), Expect = 5e-19
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 60/218 (27%)
Query: 204 FGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH---------- 253
K+ LELGGNN +V EDAD++ A VF GQ C R+ +H
Sbjct: 234 LKKVALELGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVYDEFVEK 293
Query: 254 --------------------------------KKKIDRP--------------GYFVEPT 267
KI++ G +EPT
Sbjct: 294 FVERVKALPYGDPSDPDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGEAEGNVLEPT 353
Query: 268 IVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLG 327
+++ + ++ + E F P+ + D +EA+ N+ + GLS ++FT D+ ++
Sbjct: 354 VLSDVTNDMEIAREEIFGPVAPIIKADDEEEALELANDTEYGLSGAVFTSDLERGVQF-- 411
Query: 328 PQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRESG 364
+ D G+ ++N P N E FGGEK +G GR +G
Sbjct: 412 ARRIDAGMTHINDQPVND-EPHVPFGGEKNSGLGRFNG 448
Score = 78.1 bits (193), Expect = 9e-16
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 41 DGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIV 100
DGTS I +NP TGET+A + + +D ++ AA WAA R EI+
Sbjct: 5 DGTS----ERTIDVLNPYTGETLAEIPAASKEDVDEAYRAAAAAQKEWAATLPQERAEIL 60
Query: 101 RQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP 160
+ L + + + + E G + E + I A G ILPS+ P
Sbjct: 61 EKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITREAATFPLRMEGRILPSDVP 120
Query: 161 G---HVLLENWNPLGVVGIISAFNFP 183
G V E PLGVVG+IS +NFP
Sbjct: 121 GKENRVYRE---PLGVVGVISPWNFP 143
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 87.8 bits (218), Expect = 7e-19
Identities = 104/471 (22%), Positives = 166/471 (35%), Gaps = 151/471 (32%)
Query: 49 GEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY---AAWAALPAPRRGEIVRQIGD 105
G+ P+INP+TGE I VQ+G+ D + ++++RAA+ + W + A RG ++ ++ D
Sbjct: 21 GKTFPTINPATGEKICEVQEGDKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLAD 80
Query: 106 ALRHKLVPLGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVL 164
+ L L +L+ GK ++ + ++ I + Y G + G +P +
Sbjct: 81 LIERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAGWADKIHGKTIPMDGDFFTY 140
Query: 165 LEN-----------WN-------------------------------------------- 169
+ WN
Sbjct: 141 TRHEPVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGF 200
Query: 170 PLGVVGIISAFNFPVAVYGWNAAIA--------------LVGVAVQSRFGK-----LLLE 210
P GVV ++ + P A AAI+ VG +Q GK + LE
Sbjct: 201 PPGVVNVVPGYG-PTA----GAAISSHPDIDKVAFTGSTEVGKLIQQAAGKSNLKRVTLE 255
Query: 211 LGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVEPTI-- 268
LGG + IV DADL+ A + A GQ C R F+ + D FV+ ++
Sbjct: 256 LGGKSPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRTFVQESIYDE---FVKRSVER 312
Query: 269 ----VTGLPHNSRV-----VHRETFAPIV-------------------------YVFP-- 292
V G P + + + E F I+ ++ P
Sbjct: 313 AKKRVVGNPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTV 372
Query: 293 ------------------------FDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGP 328
F ++DE I N GL++++FTKD+ +
Sbjct: 373 FSDVTDDMRIAKEEIFGPVQQIFKFKTIDEVIERANNTTYGLAAAVFTKDIDKAITF--S 430
Query: 329 QGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
G + VN N FGG K +G GRE G ++Y TVTI
Sbjct: 431 NALRAGTVWVNCY-NVVSPQAPFGGYKMSGNGRELGEYGLQEYTEVKTVTI 480
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 87.6 bits (218), Expect = 7e-19
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYFVEPT++TGL ++SRV E F P+V V PFD +EAI N+ GL++ ++T+D+
Sbjct: 340 GYFVEPTVITGLDNDSRVAQEEIFGPVVTVIPFDDEEEAIELANDTPYGLAAYVWTRDLG 399
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
+ + + G + VN ++ FGG K +G GRE G S + Y V I
Sbjct: 400 RAHRV--ARRLEAGTVWVNCW-LVRDLRTPFGGVKASGIGREGGDYSLEFYTELKNVCI 455
Score = 77.2 bits (191), Expect = 2e-15
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVP 113
+ NP+TGE +A V +G + + +++ A+ W+ + R I+ ++ D + +
Sbjct: 1 NFNPATGEVLAKVPEGGAAEVDAAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADE 60
Query: 114 LGQLVSLEMGKILAEGIGEV-----QEFIDICDYAVGLSRTYSGSILPSERPGHVLLENW 168
L L SL+ GK + F DY + G P + G +
Sbjct: 61 LALLESLDTGKPITLARTRDIPRAAANFRFFADYIL----QLDGESYPQD-GGALNYVLR 115
Query: 169 NPLGVVGIISAFNFPVAVYGWNAAIAL 195
P+GV G+I+ +N P+ + W A AL
Sbjct: 116 QPVGVAGLITPWNLPLMLLTWKIAPAL 142
Score = 52.6 bits (127), Expect = 2e-07
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
+ LELGG N IV DADL+ A V + G+ C R+ + + D F+E
Sbjct: 222 PVSLELGGKNPNIVFADADLDRAVDAAVRSSFSNNGEVCLAGSRILVQRSIYDE---FLE 278
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 87.4 bits (217), Expect = 9e-19
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVP 113
INP+TG+ +A V + D R + ++RAA+ W A R ++R++ LR
Sbjct: 1 VINPATGQVLARVPAASAADVDRAVAAARAAFPEWRATTPLERARMLRELATRLREHAEE 60
Query: 114 LGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGV 173
L + +L+ G ++ +G+V + DY GL G +P ++ P GV
Sbjct: 61 LALIDALDCGNPVSAMLGDVMVAAALLDYFAGLVTELKGETIPVG-GRNLHYTLREPYGV 119
Query: 174 VGIISAFNFPVAVYGWNAAIALV-GVAV------QS-----RFGKLLLEL 211
V I AFN P+ A L G V Q+ R +L E+
Sbjct: 120 VARIVAFNHPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSALRLAELAREV 169
Score = 67.8 bits (166), Expect = 2e-12
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G++VEPT+ + R+ E F P++ V + E + N V+ GL+++I+T D++
Sbjct: 339 GFYVEPTVFADVTPGMRIAREEIFGPVLSVLRWRDEAEMVAQANGVEYGLTAAIWTNDIS 398
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ + G + +N ++ +G FGG K +G GRE + Y + V +
Sbjct: 399 QAH--RTARRVEAGYVWIN-GSSRHFLGAPFGGVKNSGIGREECLEELLSYTQEKNVNVR 455
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 87.0 bits (216), Expect = 1e-18
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 58/169 (34%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID---------- 258
LELGG +IV +DADL+ A + A AGQ CT R+++H+ D
Sbjct: 225 LELGGKAPVIVFDDADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVYDEFVAALVEAV 284
Query: 259 ---RPGY----------------------FVE-----------------------PTIVT 270
R G FVE PT+V
Sbjct: 285 SAIRVGDPDDEDTEMGPLNSAAQRERVAGFVERAPAHARVLTGGRRAEGPGYFYEPTVVA 344
Query: 271 GLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
G+ + +V E F P+V V PFD DEAI N+V+ GL+SS++T+DV
Sbjct: 345 GVAQDDEIVQEEIFGPVVTVQPFDDEDEAIELANDVEYGLASSVWTRDV 393
Score = 62.7 bits (153), Expect = 9e-11
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
++P+TGE IA+V + D + ++ AA+ +W R + + ++ DA+ L
Sbjct: 2 VDPATGEEIATVPDASAADVDAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEEL 61
Query: 115 GQLVSLEMGKILAEGI-GEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGV 173
L S GK L E+ +D + G +RT G PGH + P+GV
Sbjct: 62 AALESRNTGKPLHLVRDDELPGAVDNFRFFAGAARTLEGPAAGEYLPGHTSMIRREPIGV 121
Query: 174 VGIISAFNFPVAVYGWNAAIAL 195
V I+ +N+P+ + W A AL
Sbjct: 122 VAQIAPWNYPLMMAAWKIAPAL 143
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 86.1 bits (214), Expect = 2e-18
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+GE INP+TGE +A+VQ D + S++ WAA+ A R I+R+ D
Sbjct: 19 TSGETFEVINPATGEVLATVQAATPADVEAAVASAKQGQKIWAAMTAMERSRILRRAVDI 78
Query: 107 LRHKLVPLGQLVSLEMGKILAEGI-GEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
LR + L L +L+ GK + E ++ D+ +Y GL+ G +P R G +
Sbjct: 79 LRERNDELAALETLDTGKPIQETSVVDIVTGADVLEYYAGLAPALEGEQIPL-RGGSFVY 137
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
PLGV I A+N+P+ + W +A AL
Sbjct: 138 TRREPLGVCAGIGAWNYPIQIACWKSAPAL 167
Score = 57.2 bits (139), Expect = 6e-09
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G FV PT+ T + +V E F P++ V FD DE I N+ + GL++ +FT D++
Sbjct: 364 GAFVAPTVFTDCTDDMTIVREEIFGPVMSVLTFDDEDEVIARANDTEYGLAAGVFTADLS 423
Query: 321 NLFKWLGP-QGSDCGLINVNIPTNG---AEIGGAFGGEKYTGGGRESGSDSWKQYCRRST 376
+ + + C IN T G AE+ GG K +G GRE+G + + Y + +
Sbjct: 424 RAHRVIHQLEAGIC-WIN----TWGESPAEM--PVGGYKQSGIGRENGIATLEHYTQIKS 476
Query: 377 VTINHGK 383
V + G
Sbjct: 477 VQVEMGP 483
Score = 39.5 bits (93), Expect = 0.002
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKK 255
+ELGG + +IV +DADL+ A + A ++GQ CT R+F+ K
Sbjct: 249 MELGGKSPLIVFDDADLDRAADIAMLANFYSSGQVCTNGTRVFVQKS 295
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 85.3 bits (212), Expect = 5e-18
Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 47 ANGEIIPSINPSTGE-TIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD 105
GE P I+P+ E TI V + +D + + AA+A W+A P R EI+ + D
Sbjct: 43 ETGEGAPVIDPADHERTIGEVSLADAEDVDAALAIAAAAFAGWSATPVEERAEILEKAAD 102
Query: 106 ALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICD-YAVGLSRTYSGSILPSERPGHVL 164
L L L + E GK LA+ EV+E ID C YA +S LP G +
Sbjct: 103 LLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQARELFSDPELPGPT-GELN 161
Query: 165 LENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ GV IS +NFP+A++ A AL
Sbjct: 162 GLELHGRGVFVCISPWNFPLAIFTGQIAAALA 193
Score = 49.1 bits (118), Expect = 3e-06
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 251 FLHKKKIDRP-GYFVEPTIVTGLPHNSRVVHRETFAPIVYV--FPFDSLDEAITWNNEVK 307
+ +D GYFV P I+ + E F PI++V F + LDEAI N
Sbjct: 377 LIAPAPLDDGNGYFVAPGIIEI--VGIFDLTTEVFGPILHVIRFKAEDLDEAIEDINATG 434
Query: 308 QGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIG-GAFGGEKYTGGGRESGSD 366
GL+ I ++D + W + + G + +N GA +G FGG +G G ++G
Sbjct: 435 YGLTLGIHSRDEREIEYWR--ERVEAGNLYINRNITGAIVGRQPFGGWGLSGTGPKAGGP 492
Query: 367 SW-KQYCRRSTVTINH 381
++ ++ TV++N
Sbjct: 493 NYLLRFGNEKTVSLNT 508
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 84.5 bits (209), Expect = 7e-18
Identities = 70/274 (25%), Positives = 106/274 (38%), Gaps = 83/274 (30%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVP 113
S+NP+TGE ++ + D ++ + A + W R + +R IG ALR +
Sbjct: 11 SVNPATGEQLSVLPWAGADDIENALQLAAAGFRDWRETNIDYRAQKLRDIGKALRARSEE 70
Query: 114 LGQLVSLEMGKILAEGIGEVQEFIDICD-YAVGLSRTYSGSILPSERPGHVLLEN----- 167
+ Q+++ EMGK + + EV + ++CD YA + ++L +E L+EN
Sbjct: 71 MAQMITREMGKPINQARAEVAKSANLCDWYA-----EHGPAMLKAEP---TLVENQQAVI 122
Query: 168 -WNPLGVVGIISAFNFPV------------------------------------------ 184
+ PLG + I +NFP+
Sbjct: 123 EYRPLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAGIP 182
Query: 185 -AVYGW-NAA------------IALVGVAVQSRFG------------KLLLELGGNNAII 218
VYGW NA IA V V R G K +LELGG++ I
Sbjct: 183 QGVYGWLNADNDGVSQMINDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFI 242
Query: 219 VNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFL 252
V DADL LA + V GQ C +R +
Sbjct: 243 VLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII 276
Score = 42.5 bits (100), Expect = 3e-04
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQ 308
RL L +KI G + PT++ + E F P+ + + A+ N+ +
Sbjct: 332 RLLLGGEKIAGAGNYYAPTVLANVTPEMTAFREELFGPVAAITVAKDAEHALELANDSEF 391
Query: 309 GLSSSIFTKDVTNLFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRESGSDS 367
GLS++IFT D T + +CG + +N + A + AFGG K +G GRE
Sbjct: 392 GLSATIFTTDETQARQM--AARLECGGVFINGYCASDARV--AFGGVKKSGFGRELSHFG 447
Query: 368 WKQYCRRSTV 377
++C TV
Sbjct: 448 LHEFCNIQTV 457
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 84.5 bits (209), Expect = 8e-18
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
A+G+ P+I+P GE IA V +G+ +D R ++++R A+ W + R I+ +
Sbjct: 16 ASGKTFPTIDPRNGEVIAHVAEGDAEDVDRAVKAARKAFDEGPWPRMTGYERSRILLRFA 75
Query: 105 DALRHKLVPLGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERPGHV 163
D L L L + + GK + EV + Y G + G LP++ P HV
Sbjct: 76 DLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFRYYAGWADKIHGMTLPADGPHHV 135
Query: 164 --LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL-------VGVAVQSRF-----GKLLL 209
L E P+GVVG I +NFP+ ++ W AL + A Q+ KL
Sbjct: 136 YTLHE---PIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAA 192
Query: 210 ELG 212
E G
Sbjct: 193 EAG 195
Score = 63.7 bits (155), Expect = 5e-11
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+I GY+++PTI + + + ++ E F P+ + F ++DE I N K GL++ +
Sbjct: 355 DRIGSKGYYIQPTIFSDVKDDMKIARDEIFGPVQSILKFKTVDEVIKRANNSKYGLAAGV 414
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQY 371
F+K++ + L + G + VN + + FGG K +G GRE G + Y
Sbjct: 415 FSKNI-DTANTLS-RALKAGTVWVNC-YDVFDASIPFGGYKMSGIGREKGIYALNNY 468
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 84.5 bits (209), Expect = 1e-17
Identities = 107/469 (22%), Positives = 168/469 (35%), Gaps = 160/469 (34%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
A+G+ P+++P TGE IA V +G+ +D +R + ++R A+ W + A R I+ +
Sbjct: 70 ASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSRILLRFA 129
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRT-------------- 149
D L L L + + GK + E+ F + Y G +
Sbjct: 130 DLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAGWADKIHGLTVPADGPHHV 189
Query: 150 --------YSGSILPSERP---------------------------------GHVLLENW 168
+G I+P P +L E
Sbjct: 190 QTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLLHEAG 249
Query: 169 NPLGVVGIISAFNFPVAVYGWNAAIA-------------------LVGVAVQSRFGKLLL 209
P GV+ ++S F P A AA+A ++ +A +S + L
Sbjct: 250 LPPGVLNVVSGFG-PTA----GAALASHMDVDKLAFTGSTDTGKIVLELAAKSNLKPVTL 304
Query: 210 ELGGNNAIIVNEDADLN----LAQQCLVF----ACCGTAGQRCTTTRRL---FLHKKK-- 256
ELGG + IV EDAD++ LA L F CC AG R R+ F+ K K
Sbjct: 305 ELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCC--AGSRTFVHERVYDEFVEKAKAR 362
Query: 257 -------------------IDR-----------------------------PGYFVEPTI 268
ID GY+++PT+
Sbjct: 363 ALKRVVGDPFKKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDRFGSKGYYIQPTV 422
Query: 269 VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV---TNLFKW 325
+ + + + E F P+ + F LDE I N + GL++ +FT+++ L +
Sbjct: 423 FSNVQDDMLIAQDEIFGPVQSILKFKDLDEVIRRANNTRYGLAAGVFTQNLDTANTLSRA 482
Query: 326 L--GPQGSDC-GLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQY 371
L G +C + + IP FGG K +G GRE G S Y
Sbjct: 483 LRVGTVWVNCFDVFDAAIP---------FGGYKMSGIGREKGIYSLNNY 522
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 83.6 bits (207), Expect = 1e-17
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
INP+T TI + +D + ++R A+ W R + +R I + +R + L
Sbjct: 2 INPATEATIGEIPAATAEDVDAAVRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREEL 61
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLS---RTYSGSILPSERPG---HVLLENW 168
+L + + GK L E +V + +Y L+ + +P V E
Sbjct: 62 AELEARDNGKPLDEAAWDVDDVAGCFEYYADLAEQLDAKAERAVPLPSEDFKARVRRE-- 119
Query: 169 NPLGVVGIISAFNFPVAVYGWNAAIAL 195
P+GVVG+I+ +NFP+ + W A AL
Sbjct: 120 -PVGVVGLITPWNFPLLMAAWKVAPAL 145
Score = 57.4 bits (139), Expect = 5e-09
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 259 RPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
GYF+ PT+ +P +SR+ E F P++ V F + DEAI N+ + GL++++ ++D
Sbjct: 339 EKGYFIAPTVFADVPTDSRIWREEIFGPVLCVRSFATEDEAIALANDSEYGLAAAVISRD 398
Query: 319 ------VTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
V + G++ +N +GG K +G GRE G
Sbjct: 399 AERCDRVAEAL--------EAGIVWINCS-QPCFPQAPWGGYKRSGIGRELG 441
Score = 52.7 bits (127), Expect = 1e-07
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH 253
LELGG + IIV +DADL A + +F C GQ C+ T RL +H
Sbjct: 228 LELGGKSPIIVFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVH 272
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 83.5 bits (207), Expect = 2e-17
Identities = 44/125 (35%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 60 GETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVS 119
G + V + D R + AA AWAA P R ++R+ D L + +
Sbjct: 1 GAVLGEVGVADAADVDRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIV 60
Query: 120 LEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISA 179
E G I + EV I A GL G ILPS PG + L PLGVVG+IS
Sbjct: 61 RESGSIRPKAGFEVGAAIGELHEAAGLPTQPQGEILPSA-PGRLSLARRVPLGVVGVISP 119
Query: 180 FNFPV 184
FNFP+
Sbjct: 120 FNFPL 124
Score = 69.2 bits (170), Expect = 8e-13
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G F PT+++G+ E F P+ V FDS +EA+ N+ + GLS+ I ++DV
Sbjct: 326 GLFYRPTVLSGVKPGMPAFDEEIFGPVAPVTVFDSDEEAVALANDTEYGLSAGIISRDVG 385
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTG-GGRESGSDSWKQYCRRSTVTI 379
L + G++++N T E FGG +G G R G +W+++ + VT+
Sbjct: 386 RAMA-LADR-LRTGMLHINDQTVNDEPHNPFGGMGASGNGSRFGGPANWEEFTQWQWVTV 443
Score = 53.1 bits (128), Expect = 1e-07
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 184 VAVYGWNAAIALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQR 243
++ G A VG A K+ LELGG NA+IV +DADL+LA + GQ
Sbjct: 193 ISFTGSTAVGRKVGEAAGRHLKKVSLELGGKNALIVLDDADLDLAASNGAWGAFLHQGQI 252
Query: 244 CTTTRRLFLHKK 255
C R +H+
Sbjct: 253 CMAAGRHLVHES 264
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 82.7 bits (205), Expect = 3e-17
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYFV PT++ +P +SR+ E F P++ V PFD EAI N GL + ++T+D
Sbjct: 338 GYFVAPTLLDDVPPDSRLAQEEIFGPVLAVMPFDDEAEAIALANGTDYGLVAGVWTRDGD 397
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
+ + G + VN G I FGG K +G GRE G ++ Y + TV +
Sbjct: 398 RAL-RVA-RRLRAGQVFVNNYGAGGGIELPFGGVKKSGHGREKGLEALYNYTQTKTVAV 454
Score = 78.8 bits (195), Expect = 5e-16
Identities = 65/272 (23%), Positives = 97/272 (35%), Gaps = 73/272 (26%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWA-ALPAPRRGEIVRQIGDALRHKLV 112
+PSTGE A + +G D R ++++R A+ + L RG ++ +I +R
Sbjct: 1 VFDPSTGEVFARIARGGAADVDRAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHAD 60
Query: 113 PLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSE---------RP--- 160
L +L SL+ GK L + +V+ +Y G + G +P P
Sbjct: 61 ELARLESLDTGKPLTQARADVEAAARYFEYYGGAADKLHGETIPLGPGYFVYTVREPHGV 120
Query: 161 -GHVLLENWN-PLGVVG------------------------------IISAFNFPVAV-- 186
GH++ WN PL + G + P
Sbjct: 121 TGHII--PWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALN 178
Query: 187 ----YGWNAAIAL----------------VGVAVQ----SRFGKLLLELGGNNAIIVNED 222
G A AL G+AV + LELGG + IV D
Sbjct: 179 VVTGLGAEAGAALVAHPGVDHISFTGSVETGIAVMRAAAENVVPVTLELGGKSPQIVFAD 238
Query: 223 ADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK 254
ADL A +V A AGQ C+ RL +H+
Sbjct: 239 ADLEAALPVVVNAIIQNAGQTCSAGSRLLVHR 270
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 82.6 bits (205), Expect = 3e-17
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+ D GY+ EPT++ G + +V RE F P+V V PFD D+A+ W N+ GL+SS+
Sbjct: 351 EAPDGKGYYYEPTLLAGARQDDEIVQREVFGPVVSVTPFDDEDQAVRWANDSDYGLASSV 410
Query: 315 FTKDV 319
+T+DV
Sbjct: 411 WTRDV 415
Score = 62.2 bits (152), Expect = 1e-10
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 49 GEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALR 108
GE P NP+TGE +A + + + + ++ AA+ W+ R E + ++ DA+
Sbjct: 16 GEKQPVYNPATGEVLAEIAEASAAQVDAAVAAADAAFPEWSQTTPKERAEALLKLADAIE 75
Query: 109 HKLVPLGQLVSLEMGK-ILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN 167
+L SL GK + E+ +D+ + G +R G GH +
Sbjct: 76 ENADEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAGAARCLEGKAAGEYLEGHTSMIR 135
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+P+GVV I+ +N+P+ + W A AL
Sbjct: 136 RDPVGVVASIAPWNYPLMMAAWKLAPAL 163
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 82.2 bits (204), Expect = 7e-17
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 16/158 (10%)
Query: 46 KANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIG 104
+G P +NP+ + + +V + + +D R + +++AA+ W+A PA R I+ +
Sbjct: 563 DVDGGTRPVLNPADHDDVVGTVTEASAEDVERALAAAQAAFPEWSATPAAERAAILERAA 622
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICD-YAVGLSRTYSGSILPSERPGHV 163
D + + L L E GK LA I EV+E +D YA R +G
Sbjct: 623 DLMEAHMPELFALAVREAGKTLANAIAEVREAVDFLRYYAAQARRLLNGPGHK------- 675
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIALV-GVAV 200
PLG V IS +NFP+A++ A ALV G V
Sbjct: 676 ------PLGPVVCISPWNFPLAIFTGQIAAALVAGNTV 707
Score = 29.1 bits (66), Expect = 4.9
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 199 AVQSRFGK---LLLELGGNNAIIVNEDADLNLAQQCL--VFACC-GTAGQRCTTTRRLFL 252
+ R G L+ E GG NA+IV+ A L +Q + V A +AGQRC+ R L L
Sbjct: 774 TLAKRSGPPVPLIAETGGQNAMIVDSSA---LPEQVVADVIASAFDSAGQRCSALRVLCL 830
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 81.5 bits (202), Expect = 8e-17
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 257 IDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT 316
+ G+FVEPT+ G+ + R+ E F P++ V FDS +EA+ N+ GL++S++T
Sbjct: 343 TETGGFFVEPTVFDGVTPDMRIAREEIFGPVLSVITFDSEEEAVALANDSVYGLAASVWT 402
Query: 317 KDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRST 376
D++ + + G + VN + +I FGG K +G GR+ + +Y T
Sbjct: 403 SDLSRAHR--VARRLRAGTVWVNC-FDEGDITTPFGGFKQSGNGRDKSLHALDKYTELKT 459
Query: 377 VTI 379
I
Sbjct: 460 TWI 462
Score = 68.0 bits (167), Expect = 2e-12
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 49 GEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIGDA 106
GE +INP+TG +A V + D R + ++R A+ W+ L R ++ ++ D
Sbjct: 1 GETFATINPATGRVLAEVAACDAADVDRAVAAARRAFESGVWSRLSPAERKAVLLRLADL 60
Query: 107 LRHKLVPLGQLVSLEMGKILAEGI-GEVQEFIDICD-YAVGLSRTYSGSILPSERPGHVL 164
+ L L +L+MGK +++ + +V + YA + + Y G + P+ P +
Sbjct: 61 IEAHRDELALLETLDMGKPISDALAVDVPSAANTFRWYAEAIDKVY-GEVAPTG-PDALA 118
Query: 165 LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
L PLGVVG + +NFP+ + W A AL
Sbjct: 119 LITREPLGVVGAVVPWNFPLLMAAWKIAPAL 149
Score = 39.9 bits (94), Expect = 0.002
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 199 AVQSRFGKLLLELGGNNAIIVNEDA-DLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKI 257
+ QS ++ LE GG + IV DA DL+ A + G+ C+ RL +H+
Sbjct: 223 SGQSNLKRVWLECGGKSPNIVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIK 282
Query: 258 DRPGYFVE 265
D F+E
Sbjct: 283 DE---FLE 287
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 80.5 bits (199), Expect = 2e-16
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 54 SINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIGDALRHKL 111
SI+P+TGE I + G V + I ++R A+ WA P R ++ ++ DA
Sbjct: 1 SIDPATGEVIGTYADGGVAEAEAAIAAARRAFDETDWAHDPR-LRARVLLELADAFEANA 59
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPL 171
L +L++LE GKIL E E+ I Y GL+RT +G ++ E PG L P+
Sbjct: 60 ERLARLLALENGKILGEARFEISGAISELRYYAGLARTEAGRMIEPE-PGSFSLVLREPM 118
Query: 172 GVVGIISAFNFPVA 185
GV GII +N PV
Sbjct: 119 GVAGIIVPWNSPVV 132
Score = 60.0 bits (146), Expect = 8e-10
Identities = 52/250 (20%), Positives = 82/250 (32%), Gaps = 70/250 (28%)
Query: 192 AIALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
AI R G LELGG IV +DADL+ A L A AGQ C R+
Sbjct: 212 AIMAAAAPTLKRLG---LELGGKTPCIVFDDADLDAALPKLERALTIFAGQFCMAGSRVL 268
Query: 252 LHKKKIDR---------------PGY----------------FVEPTIVTGLPHNSRVVH 280
+ + D PG V+ + + + VV
Sbjct: 269 VQRSIADEVRDRLAARLAAVKVGPGLDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVL 328
Query: 281 R-------------------------------ETFAPIVYVFPFDSLDEAITWNNEVKQG 309
R E F P++ + FD EA+ N+ G
Sbjct: 329 RGGPVTEGLAKGAFLRPTLLEVDDPDADIVQEEIFGPVLTLETFDDEAEAVALANDTDYG 388
Query: 310 LSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA-FGGEKYTGGGRESGSDSW 368
L++S++T+D+ + + G + +N A GG + +G GR G +
Sbjct: 389 LAASVWTRDLARAMRV--ARAIRAGTVWIN--DWNKLFAEAEEGGYRQSGLGRLHGVAAL 444
Query: 369 KQYCRRSTVT 378
+ + +
Sbjct: 445 EDFIEYKHIY 454
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 80.2 bits (198), Expect = 2e-16
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G +V+PTI TGLP ++RVV E F P ++ PFDS +E I N+ GL++S++T+D++
Sbjct: 364 GAWVQPTIWTGLPDSARVVTEEIFGPCCHIAPFDSEEEVIALANDTPYGLAASVWTEDLS 423
Query: 321 NLFKWLGPQGSDCGLINVN------IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
+ + + G++ VN + T FGG K +G GRE G S + Y
Sbjct: 424 RAHRV--ARQMEVGIVWVNSWFLRDLRT-------PFGGSKLSGIGREGGVHSLEFYTEL 474
Query: 375 STVTIN 380
+ V I
Sbjct: 475 TNVCIK 480
Score = 45.9 bits (109), Expect = 2e-05
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 48 NGEIIPS------INPSTGETIASVQQGNVQDYHRCIESSRAAYAA-WAALPAPRRG--- 97
NG + S INP G IA V + + + ++RAA W + R
Sbjct: 6 NGAFVESGKTFANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPWGKMTVAERADLL 65
Query: 98 -----EIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSG 152
EI R+ D L ++ G+ SL + G + F D+ +
Sbjct: 66 YAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFADVV-------KNAPT 118
Query: 153 SILPSERPGHVLLENW---NPLGVVGIISAFNFPVAVYGWNAAIAL 195
P N+ PLGVVG+IS +N P+ + W AL
Sbjct: 119 ECFEMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMTWKVGPAL 164
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 80.0 bits (198), Expect = 2e-16
Identities = 60/241 (24%), Positives = 95/241 (39%), Gaps = 68/241 (28%)
Query: 196 VGVAVQSRFG----KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
VG + ++ ++LLELGG +A IV +DADL A V C AGQ C T RL
Sbjct: 214 VGRRIMAQAAATLKRVLLELGGKSANIVLDDADLAAAAPAAVGVCMHNAGQGCALTTRLL 273
Query: 252 LHKKKIDR-------------------PGYFVEP----------------------TIVT 270
+ + + D PG + P +VT
Sbjct: 274 VPRSRYDEVVEALAAAFEALPVGDPADPGTVMGPLISAAQRDRVEGYIARGRDEGARLVT 333
Query: 271 G--------------------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGL 310
G + ++ R+ E F P++ V P+D DEA+ N+ GL
Sbjct: 334 GGGRPAGLDKGFYVEPTLFADVDNDMRIAQEEIFGPVLVVIPYDDDDEAVRIANDSDYGL 393
Query: 311 SSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQ 370
S +++ DV ++ + G + +N G FGG K +G GRE+G + ++
Sbjct: 394 SGGVWSADVDRAYRV--ARRIRTGSVGIN-GGGGYGPDAPFGGYKQSGLGRENGIEGLEE 450
Query: 371 Y 371
+
Sbjct: 451 F 451
Score = 66.9 bits (164), Expect = 5e-12
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 6/147 (4%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWA-ALPAPRRGEIVRQIGDALRHKLVP 113
INP+T E I + D I ++R A+ + A R +RQ+ +AL +
Sbjct: 2 INPATEEVIGTAPDAGAADVDAAIAAARRAFDTGDWSTDAEERARCLRQLHEALEARKEE 61
Query: 114 LGQLVSLEMGKILA-EGIGEVQEFIDICDYAVGLSRTYSGSI-LPSERPGHVLLENW--- 168
L L+ E+G + +V I Y L+ ++ LP
Sbjct: 62 LRALLVAEVGAPVMTARAMQVDGPIGHLRYFADLADSFPWEFDLPVPALRGGPGRRVVRR 121
Query: 169 NPLGVVGIISAFNFPVAVYGWNAAIAL 195
P+GVV I+ +NFP + A AL
Sbjct: 122 EPVGVVAAITPWNFPFFLNLAKLAPAL 148
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 80.0 bits (197), Expect = 3e-16
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 48 NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
NGE+I NP+ G+ + SV + + I+++ A AW AL A R I+R+ + +
Sbjct: 24 NGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERANILRRWFNLM 83
Query: 108 RHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHVL 164
L +L++LE GK LAE GE+ FI+ +A R Y G +P + L
Sbjct: 84 MEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEW--FAEEGKRIY-GDTIPGHQADKRL 140
Query: 165 LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ P+GV I+ +NFP A+ A AL
Sbjct: 141 IVIKQPIGVTAAITPWNFPAAMITRKAGPAL 171
Score = 62.6 bits (152), Expect = 1e-10
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G F +PTI+ +P N++V ETF P+ +F F + I N+ + GL++ + +D++
Sbjct: 365 GNFFQPTILVDVPANAKVAKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLS 424
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRE 362
+F+ + + G++ +N E+ FGG K +G GRE
Sbjct: 425 RVFRV--GEALEYGIVGINTGIISNEV-APFGGIKASGLGRE 463
Score = 39.1 bits (91), Expect = 0.003
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
K+ LELGGN IV +DADL+ A + + + AGQ C RL++ DR
Sbjct: 251 KVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDR 304
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 79.3 bits (196), Expect = 4e-16
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
I P+TGE +A+V +D ++S++AA W+A RG I+R+ D LR + +
Sbjct: 2 IEPATGEVLATVHCAGAEDVDLAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEI 61
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWN----- 169
+L +++ GK + E ++ D +Y GL+ T SG HV L +
Sbjct: 62 ARLETIDNGKPIEEARVDIDSSADCLEYYAGLAPTLSGE--------HVPLPGGSFAYTR 113
Query: 170 --PLGVVGIISAFNFPVAVYGWNAAIAL 195
PLGV I A+N+P+ + W +A AL
Sbjct: 114 REPLGVCAGIGAWNYPIQIASWKSAPAL 141
Score = 71.6 bits (176), Expect = 2e-13
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G++V P ++T + +V E F P++ + PFD+ +E I N+ GL++ +FT+D+
Sbjct: 339 GFYVSPCVLTDCTDDMTIVREEIFGPVMSILPFDTEEEVIRRANDTTYGLAAGVFTRDLQ 398
Query: 321 NLFKWLGP-QGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
+ + Q C + NI + E+ FGG K +G GRE+G+ + + Y + TV +
Sbjct: 399 RAHRVIAQLQAGTCWINTYNI--SPVEV--PFGGYKQSGFGRENGTAALEHYTQLKTVYV 454
Query: 380 NHG 382
G
Sbjct: 455 EMG 457
Score = 43.8 bits (104), Expect = 9e-05
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG + +I+ +DADL A + A + GQ C+ R+F+ + D F E
Sbjct: 223 LELGGKSPLIIFDDADLENAVNGAMMANFLSQGQVCSNGTRVFVQRSIKDE---FTE 276
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 79.0 bits (195), Expect = 4e-16
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K+ + G F EPT+++ + + V ETF P+ VF FD +E I N+ + GL++
Sbjct: 331 KRHELGGNFFEPTVLSNVTADMLVSKEETFGPLAPVFKFDDEEEVIAIANDTEVGLAAYF 390
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQY 371
F++D++ + W + + G++ +N + FGG K +G GRE ++Y
Sbjct: 391 FSRDLSRI--WRVAEALEYGMVGINTGLISNVV-APFGGVKQSGLGREGSKYGIEEY 444
Score = 70.5 bits (173), Expect = 2e-13
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 56 NPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLG 115
NP+TGE I SV V + I ++ A+ W A A R ++R+ + + L
Sbjct: 3 NPATGEIIGSVPDQGVDETEAAIRAAYEAFKTWRATTAKERSSLLRKWYNLMMENKDDLA 62
Query: 116 QLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLG 172
+L++LE GK L E GE+ F++ +A R Y G +PS + L+ P+G
Sbjct: 63 RLITLENGKPLKEAKGEILYAASFLEW--FAEEAKRVY-GDTIPSPQSDKRLIVIKQPVG 119
Query: 173 VVGIISAFNFPVAVYGWNAAIAL 195
V I+ +NFP A+ A AL
Sbjct: 120 VCAAITPWNFPAAMITRKAGAAL 142
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 79.2 bits (195), Expect = 5e-16
Identities = 36/150 (24%), Positives = 67/150 (44%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
A+G IP NP+T E V +V + + S+R + W +R ++ +
Sbjct: 13 ASGTYIPVTNPATNEVTTKVAFASVDEVDAAVASARETFLTWGQTSLAQRTSVLLRYQAL 72
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
L+ + +L++ E GK ++ +G+V +++ ++A G++ G +
Sbjct: 73 LKEHRDEIAELITAEHGKTHSDALGDVARGLEVVEHACGVNSLLKGETSTQVATRVDVYS 132
Query: 167 NWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
PLGV I+ FNFP + W IA+
Sbjct: 133 IRQPLGVCAGITPFNFPAMIPLWMFPIAIA 162
Score = 50.3 bits (120), Expect = 1e-06
Identities = 59/242 (24%), Positives = 84/242 (34%), Gaps = 67/242 (27%)
Query: 202 SRFGKLLLELGG-NNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFL-------- 252
S GK + LGG N ++V DAD + A LV A G AGQRC L
Sbjct: 235 SAHGKRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQRCMAISAAVLVGAADEWV 294
Query: 253 -----------------------------HKKKI----------------DRPGYFVE-- 265
K ++ D GY V+
Sbjct: 295 PEIRERAEKIRIGPGDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGY 354
Query: 266 -------PTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
PT++ +P + E F P++ V D+L+EAI N G ++IFT+D
Sbjct: 355 EEGNWVGPTLLERVPPTMKAYQEEIFGPVLCVLEADTLEEAIALINASPYGNGTAIFTRD 414
Query: 319 VTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEK--YTGGGRESGSDSWKQYCRRST 376
++ + G + VN+P +F G K + G G Y R T
Sbjct: 415 GAAARRF--QHEIEVGQVGVNVPIPVPLPYFSFTGWKDSFFGDHHIYGKQGTHFYTRGKT 472
Query: 377 VT 378
VT
Sbjct: 473 VT 474
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 78.6 bits (194), Expect = 7e-16
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+ + GYFV+PT+V +SR++ ETF P+V P++ +E I N+ GL++S+
Sbjct: 354 EALAGEGYFVQPTLVLARSADSRLMREETFGPVVSFVPYEDEEELIQLINDTPFGLTASV 413
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
+T +++ +++ + G + VN+ T + FGG K +G GRE GS Y
Sbjct: 414 WTNNLSKALRYI--PRIEAGTVWVNMHTF-LDPAVPFGGMKQSGIGREFGSAFIDDYTEL 470
Query: 375 STVTI 379
+V I
Sbjct: 471 KSVMI 475
Score = 71.7 bits (176), Expect = 1e-13
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 41 DGTSWKANGEIIPSI-NPSTGETIASVQQGNVQDYHRCIESSRAAY-AAWAALPAPRRGE 98
DG E I NP+T + IASV D + S+ A+ +AWA RG
Sbjct: 5 DGRPVAGQSEKRLDITNPATEQVIASVASATEADVDAAVASAWRAFVSAWAKTTPAERGR 64
Query: 99 IVRQIGDALRHKLVPLGQLVSLEMGKI--LAEGIGEVQEFIDICDYAVGLSRTYSGSILP 156
I+ ++ D + L QL +L GK L+ EV + + Y G + +G L
Sbjct: 65 ILLRLADLIEQHGEELAQLETLCSGKSIHLSRAF-EVGQSANFLRYFAGWATKINGETLA 123
Query: 157 SERPG-----HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
P + P+GVV I +NF V + W AL
Sbjct: 124 PSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIAVWKIGAALA 168
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 78.7 bits (195), Expect = 1e-15
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 16 YSDSVSKYPFLKELGLSGSVNPGVYDGTSWKA------NGEIIPSINPS-TGETIASVQQ 68
+D P + + W+A GE P ++P+ + V
Sbjct: 530 LNDRSELEPLAAAIAA--------FLEKQWQAGPIINGEGEARPVVSPADRRRVVGEVAF 581
Query: 69 GNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAE 128
+ + + + ++RAA+ AW+ P R I+ + D L L L E GK L +
Sbjct: 582 ADAEQVEQALAAARAAFPAWSRTPVEERAAILERAADLLEANRAELIALCVREAGKTLQD 641
Query: 129 GIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN---WNPLGVVGIISAFNFPVA 185
I EV+E +D C Y +R G+ P + PG N + GV IS +NFP+A
Sbjct: 642 AIAEVREAVDFCRYYAAQARRLFGA--PEKLPGPTGESNELRLHGRGVFVCISPWNFPLA 699
Query: 186 VYGWNAAIALV-GVAV 200
++ A AL G V
Sbjct: 700 IFLGQVAAALAAGNTV 715
Score = 29.4 bits (67), Expect = 4.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 210 ELGGNNAIIVNEDADLNLAQQCLV------FACCGTAGQRCTTTRRLFLH 253
E GG NA+IV+ A L +Q + F +AGQRC+ R LF+
Sbjct: 796 ETGGQNAMIVDSTA---LPEQVVDDVVTSAF---RSAGQRCSALRVLFVQ 839
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 77.4 bits (191), Expect = 1e-15
Identities = 59/281 (20%), Positives = 104/281 (37%), Gaps = 73/281 (25%)
Query: 52 IPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKL 111
I NP+ GE I +V + ++ IE + A + LPA +R +I+ ++ + + +
Sbjct: 1 IEVRNPANGEVIDTVPSLSREEVREAIEVAEKAKDVMSNLPAYKRYKILMKVAELIERRK 60
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSE----RPGHVLLEN 167
L +L+++E+GK + + EV+ I + A ++ G +P + +
Sbjct: 61 EELAKLLTIEVGKPIKQSRVEVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTV 120
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIAL-VGVAV-----------QSRFGKLLLELG--- 212
P+GVVG I+ FNFP ++ A A+ VG +V K+L E G
Sbjct: 121 REPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGLPP 180
Query: 213 -------GNNAIIVNE-------------------------------------------- 221
G + + +E
Sbjct: 181 GVINVVTGYGSEVGDEIVTNPKVNMISFTGSTAVGLLIASKAGGTGKKVALELGGSDPMI 240
Query: 222 ---DADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
DADL A V AGQ C +R+ + ++ D+
Sbjct: 241 VLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVYDK 281
Score = 68.9 bits (169), Expect = 9e-13
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
G F PT++ + V+ E F P++ + +EA+ N + GL +S+FT D+
Sbjct: 339 EGSFFPPTVLENDTPDMIVMKEEVFGPVLPIAKVKDDEEAVEIANSTEYGLQASVFTNDI 398
Query: 320 TNLFKWLGPQGSDCGLINVNIPTNGAEIGG---------AFGGEKYTGGGRES 363
K + + G I FGG K +G GRE
Sbjct: 399 NRALK-----------VARELEAGGVVINDSTRFRWDNLPFGGFKKSGIGREG 440
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 77.8 bits (192), Expect = 2e-15
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 47 ANGEIIPSINPST-GETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD 105
A GE P INP+ + + +V + D + +E++ AA W+A P R I+ + D
Sbjct: 124 AGGEPRPVINPADPDDIVGTVTEATEADVEQALEAAVAAAPIWSATPPAERAAILERAAD 183
Query: 106 ALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
+ ++ L L+ E GK L+ I EV+E +D Y G +R G+ H
Sbjct: 184 LMEAQMPQLMGLLVREAGKTLSNAIAEVREAVDFLRYYAGQARDTFGN------LTH--- 234
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
PLG V IS +NFP+A++ A AL
Sbjct: 235 ---RPLGPVVCISPWNFPLAIFTGQIAAALA 262
Score = 35.8 bits (83), Expect = 0.037
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 207 LLLELGGNNAIIVNEDADLNLAQQCL---VFACCGTAGQRCTTTRRLFLHKKKIDR 259
L+ E GG NA+IV+ A LA+Q + + + +AGQRC+ R L L + DR
Sbjct: 345 LIAETGGQNAMIVDSSA---LAEQVVADVLASAFDSAGQRCSALRVLCLQEDVADR 397
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 76.7 bits (189), Expect = 3e-15
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYF+ PTI T +P + R+V E F P+V + F + +EAI N+ GL++++FTKD+
Sbjct: 367 GYFIPPTIFTDVPQDMRIVKEEIFGPVVVISKFKTYEEAIKKANDTTYGLAAAVFTKDIR 426
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ + + G++ +N +N +++G FGG K +G GRE G + Y + V IN
Sbjct: 427 RAHRVA--RELEAGMVWIN-SSNDSDVGVPFGGFKMSGIGRELGEYGLETYTQTKAVHIN 483
Score = 74.8 bits (184), Expect = 1e-14
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY-AAWAALPAPRRGEIVRQIGD 105
++GE I ++NPSTGE IASV +D + ++++R A+ + W+ + RGE++ ++ D
Sbjct: 20 SDGETIKTVNPSTGEVIASVYAAGEEDVDKAVKAARKAFESWWSKVTGEERGELLDKLAD 79
Query: 106 ALRHKLVPLGQLVSLEMGKIL-AEGIGEVQEFIDICDYAVGLSRTYSGSILP--SERPGH 162
+ L + +L+ GK + +G++ E I + Y G + G +P + +
Sbjct: 80 LVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIRYYAGWADKIQGKTIPTSPNKLAY 139
Query: 163 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
L E P GV G I +N+P+A+ W A AL
Sbjct: 140 TLHE---PYGVCGQIIPWNYPLAMAAWKLAPAL 169
Score = 42.0 bits (99), Expect = 4e-04
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 170 PLGVVGIISAFNFPVAVYGWNAA-------IAL-----VGVAVQSRFGKLL----LELGG 213
P GVV II + AV G A IA G V + L LE GG
Sbjct: 200 PPGVVNIIPGYG---AVAGSALAEHPDVDKIAFTGSTATGRLVMKAAAQNLKAVTLECGG 256
Query: 214 NNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
+ +V EDADL+ A + +GQ CT T R+++ + D+ FVE
Sbjct: 257 KSPALVFEDADLDQAVKWAAAGIMYNSGQNCTATSRIYVQESIYDK---FVE 305
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 76.5 bits (189), Expect = 4e-15
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
+G+ P+INP+T E I V + + +D ++++RAA+ W + RG ++ ++
Sbjct: 16 VSGKTFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWRKMDPRERGRLLNKLA 75
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGI-GEVQEFIDICDYAVGLSRTYSGSILPSERPGHV 163
D + L L SL+ GK L E G+V I Y G + G +P +
Sbjct: 76 DLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLRYYAGWADKIQGKTIPIDGNFLA 135
Query: 164 L--LENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
E P+GV G I +NFP+ + W A AL
Sbjct: 136 YTRRE---PIGVCGQIIPWNFPLLMLAWKLAPALA 167
Score = 73.8 bits (182), Expect = 3e-14
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQ 308
L ++ GYF++PT+ T + + ++ E F P+V + F + DE I N+ +
Sbjct: 349 TLLTGGERHGSKGYFIQPTVFTDVKDDMKIAKEEIFGPVVTILKFKTEDEVIERANDTEY 408
Query: 309 GLSSSIFTKDVTNLFK----------WLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTG 358
GL++ +FTKD+ + W+ + + +P FGG K +G
Sbjct: 409 GLAAGVFTKDINKALRVSRALKAGTVWVNTY----NVFDAAVP---------FGGFKQSG 455
Query: 359 GGRESGSDSWKQYCRRSTVTI 379
GRE G + ++Y + VTI
Sbjct: 456 FGRELGEEGLEEYTQVKAVTI 476
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 76.4 bits (188), Expect = 4e-15
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 2/165 (1%)
Query: 33 GSVNPGVYDGTSWKANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAAL 91
G P V +G + +I+ SINP E + +V + + + ++++ A+ AW
Sbjct: 30 GKTYPLVINGERVETENKIV-SINPCDKSEVVGTVSKASQEHAEHALQAAAKAFEAWKKT 88
Query: 92 PAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYS 151
R I+ + +R + L+ E+GK E EV E ID +Y +
Sbjct: 89 DPEERAAILFKAAAIVRRRRHEFSALLVKEVGKPWNEADAEVAEAIDFMEYYARQMIELA 148
Query: 152 GSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ R G + P GV +IS +NFP A+ +V
Sbjct: 149 KGKPVNSREGETNQYVYTPTGVTVVISPWNFPFAIMVGMTVAPIV 193
Score = 59.9 bits (145), Expect = 1e-09
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 62/238 (26%)
Query: 201 QSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKK----- 255
Q +++ E+GG + +IV+EDAD+ LA Q + G AGQ+C+ R +H+K
Sbjct: 273 QKHLKRVIAEMGGKDTVIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAVVHEKVYDEV 332
Query: 256 --------------KIDRPGYFVEPTI--------------------------------- 268
D +V P I
Sbjct: 333 VERFVEITESLKVGPPDSADVYVGPVIDQKSFNKIMEYIEIGKAEGRLVSGGCGDDSKGY 392
Query: 269 ------VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNL 322
+ +R+ E F P+V DEA+ N + GL+ + + + ++
Sbjct: 393 FIGPTIFADVDRKARLAQEEIFGPVVAFIRASDFDEALEIANNTEYGLTGGVISNNRDHI 452
Query: 323 FKWLGPQGSDCGLINVNIPTNGAEIG-GAFGGEKYTG-GGRESGSDSWKQYCRRSTVT 378
+ + G + N GA +G FGG K +G + G D + + TVT
Sbjct: 453 NR--AKAEFEVGNLYFNRNITGAIVGYQPFGGFKMSGTDSKAGGPDYLALFMQAKTVT 508
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 76.0 bits (187), Expect = 5e-15
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 15/154 (9%)
Query: 49 GEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALR 108
GE +++P+T E + SV +G D R ++++ A+ WA L A R + +I D +
Sbjct: 15 GETFETLSPATNEVLGSVARGGAADVDRAAKAAKEAFKRWAELKAAERKRYLHKIADLIE 74
Query: 109 HKLVPLGQLVSLE-------MGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPG 161
+ L L+ + + + F D C+ A+ G P
Sbjct: 75 QHADEIAVLECLDCGQPLRQTRQQVIRAAENFRFFADKCEEAM------DGRTYPV--DT 126
Query: 162 HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
H+ P+G VG+I+ +N P + W A AL
Sbjct: 127 HLNYTVRVPVGPVGLITPWNAPFMLSTWKIAPAL 160
Score = 73.7 bits (181), Expect = 3e-14
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 259 RPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
G +V PT+ TG ++ R+ E F P++ V PF +EAI N+ + GL+ ++T D
Sbjct: 359 GRGNYVLPTVFTGADNHMRIAQEEIFGPVLTVIPFKDEEEAIEKANDTRYGLAGYVWTND 418
Query: 319 VTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVT 378
V + + G+I VN N + FGG K +G GRE G+ S+ Y V
Sbjct: 419 VGRAHRV--ALALEAGMIWVN-SQNVRHLPTPFGGVKASGIGREGGTYSFDFYTETKNVA 475
Query: 379 INHG 382
+ G
Sbjct: 476 LALG 479
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 75.0 bits (185), Expect = 1e-14
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
P TGE + + Q D +RAA AWAA P R + + D + + L
Sbjct: 1 EAPFTGEPLGELPQSTPADVEAAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDEL 60
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYS---GSILPSERPGHVL------L 165
L+ LE GK F ++ D A+ +R Y+ +L R +
Sbjct: 61 LDLIQLETGKARR------HAFEEVLDVAIV-ARYYARRAERLLKPRRRRGAIPVLTRTT 113
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIALV-GVAV 200
N P GVVG+IS +N+P+ + +A AL+ G AV
Sbjct: 114 VNRRPKGVVGVISPWNYPLTLAVSDAIPALLAGNAV 149
Score = 68.5 bits (168), Expect = 1e-12
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 262 YFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTN 321
YF EPT++TG+ + + ETF P+V ++ DEAI N+ GL++S++T+D
Sbjct: 337 YFYEPTVLTGVTEDMELFAEETFGPVVSIYRVADDDEAIELANDTDYGLNASVWTRDGAR 396
Query: 322 LFKWLGPQGSDCGLINVN---IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVT 378
+ + + G +NVN + I GG K +G GR G++ +Y TV
Sbjct: 397 GRR-IAAR-LRAGTVNVNEGYAAAWAS-IDAPMGGMKDSGLGRRHGAEGLLKYTETQTVA 453
Score = 56.9 bits (138), Expect = 8e-09
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG N +IV EDADL+ A V AC AGQ C + R+++H+ D FV
Sbjct: 224 LELGGKNPMIVLEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDE---FVR 277
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 74.9 bits (185), Expect = 1e-14
Identities = 60/244 (24%), Positives = 88/244 (36%), Gaps = 85/244 (34%)
Query: 207 LLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE- 265
L+LELGG + IV DADL LA + +V +GQRCT +R+ +H+ D VE
Sbjct: 245 LVLELGGKDPAIVLPDADLELAAKEIVKGALSYSGQRCTAIKRVLVHESVADE---LVEL 301
Query: 266 ----------------PTIVTGLP-----------------HNSRVVH------------ 280
+T L + V++
Sbjct: 302 LKEEVAKLKVGMPWDNGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGGREGGNLIYP 361
Query: 281 --------------RETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWL 326
E F P++ + + ++EAI N+ GL +SIFTKD+ K
Sbjct: 362 TLLDPVTPDMRLAWEEPFGPVLPIIRVNDIEEAIELANKSNYGLQASIFTKDINKARK-- 419
Query: 327 GPQGSDCGLIN------VNIPTNGAEIGG----AFGGEKYTGGGRESGSDSWKQYCRRST 376
L + VNI N G F G K +G G + D+ + RR
Sbjct: 420 --------LADALEVGTVNI--NSKCQRGPDHFPFLGRKDSGIGTQGIGDALRSMTRRKG 469
Query: 377 VTIN 380
+ IN
Sbjct: 470 IVIN 473
Score = 60.7 bits (148), Expect = 4e-10
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 35 VNPGVYDGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAA-LPA 93
+ +G +++G+ I +P GE I SV + + E++ A W +P
Sbjct: 1 QFKYLINGEWKESSGKTIEVYSPIDGEVIGSVPALSALEILEAAETAYDAGRGWWPTMPL 60
Query: 94 PRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGS 153
R + + + D L+ + L+ E+GK L + + EV ID + + G
Sbjct: 61 EERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRDTIEELKRLDGD 120
Query: 154 ILPSERPGHVL-LENW---NPLGVVGIISAFNFPV 184
LP + PLGVV I FN+P+
Sbjct: 121 SLPGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPL 155
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 74.7 bits (183), Expect = 2e-14
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 48 NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
GE P NP+TGE I + + + + + ++ AA+A W R E + ++ D +
Sbjct: 14 EGEKQPVYNPATGEVILEIAEASAEQVDAAVRAADAAFAEWGQTTPKARAECLLKLADVI 73
Query: 108 RHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
+L S GK L E+ +D+ + G +R SG GH +
Sbjct: 74 EENAQVFAELESRNCGKPLHSVFNDEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMI 133
Query: 167 NWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+PLGVV I+ +N+P+ + W A AL
Sbjct: 134 RRDPLGVVASIAPWNYPLMMAAWKLAPAL 162
Score = 61.6 bits (149), Expect = 2e-10
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GY+ PT++ G + +V +E F P+V + FD ++ + W N+ + GL+SS++TKDV
Sbjct: 356 GYYFAPTLLAGAKQDDAIVQKEVFGPVVSITSFDDEEQVVNWANDSQYGLASSVWTKDVG 415
Query: 321 NLFKWLGPQGSDCGLINVN------IPTNGAEIGG------AFGGEKYT 357
+ C +N + +P G ++ G +G E YT
Sbjct: 416 RAHRLSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYT 464
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 73.9 bits (182), Expect = 3e-14
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAA--WAALPAPRRGEIVRQIGDALRHKLV 112
+P+ G +A +G V+D + ++R A+ W + R ++ ++ D +R +
Sbjct: 2 RSPAHGVVVARYAEGTVEDVDAAVAAARKAFDKGPWPRMSGAERAAVLLKVADLIRARRE 61
Query: 113 PLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSG---SILPSERPGHVLLENWN 169
L + +LE GK +++ GE++ D+ YA L+RT G + L + G VL E
Sbjct: 62 RLALIETLESGKPISQARGEIEGAADLWRYAASLARTLHGDSYNNLGDDMLGLVLRE--- 118
Query: 170 PLGVVGIISAFNFP 183
P+GVVGII+ +NFP
Sbjct: 119 PIGVVGIITPWNFP 132
Score = 71.2 bits (175), Expect = 2e-13
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 259 RPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
G F +PTI T + + + E F P++ V FD++DEAI N+ GLS+ +++KD
Sbjct: 337 AAGLFYQPTIFTDVTPDMAIAREEIFGPVLSVLTFDTVDEAIALANDTVYGLSAGVWSKD 396
Query: 319 VTNLFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTV 377
+ + G + VN E+ FGG K +G GRE G ++Y TV
Sbjct: 397 IDTAL--TVARRIRAGTVWVNTFLDGSPEL--PFGGFKQSGIGRELGRYGVEEYTELKTV 452
Query: 378 TI 379
+
Sbjct: 453 HL 454
Score = 46.6 bits (111), Expect = 1e-05
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK 254
K+ LELGG N IV DADL+ A +VF AG+ C + RL +H+
Sbjct: 224 KVSLELGGKNPQIVFADADLDAAADAVVFGVYFNAGECCNSGSRLLVHE 272
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 73.7 bits (181), Expect = 3e-14
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 64/244 (26%)
Query: 199 AVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFL------ 252
S K+ LELGG + +I+ D D++ A + + + G+ C RLF+
Sbjct: 246 CAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVEESIHD 305
Query: 253 -----------------------------HKKKID------------------------R 259
HK +D R
Sbjct: 306 EFVRRVVEEVKKMKIGDPLDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDR 365
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYV--FPFDSLDEAITWNNEVKQGLSSSIFTK 317
PG+F EPT+ T + + + E+F PI+ + F +D + N+ + GL+S +FTK
Sbjct: 366 PGFFFEPTVFTDVEDHMFIAKEESFGPIMIISKFDDGDVDGVLQRANDTEYGLASGVFTK 425
Query: 318 DVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTV 377
D+ + G + VN N ++ FGG K +G G++ G ++ +Y + TV
Sbjct: 426 DINKALYV--SDKLEAGTVFVNT-YNKTDVAAPFGGFKQSGFGKDLGEEALNEYLKTKTV 482
Query: 378 TINH 381
TI +
Sbjct: 483 TIEY 486
Score = 57.9 bits (140), Expect = 4e-09
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 6/155 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
G+ +INP+ G I V V+D R + +++ A+ W + A RG ++ ++
Sbjct: 18 EGGKTYNTINPTDGSVICKVSLATVEDVDRAVAAAKEAFENGEWGKMNARDRGRLMYRLA 77
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSILP--SERPG 161
D + L + SL+ G + + V I Y G G +P RP
Sbjct: 78 DLMEEHQEELATIESLDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGKTIPINQARPN 137
Query: 162 HVL-LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
L L P+GV GI+ +N+P+ + W A L
Sbjct: 138 RNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAACL 172
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 73.4 bits (181), Expect = 4e-14
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 40 YDGTSWKA--NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAA--WAALPAPR 95
+ G W A E I ++P+T E + V + D + ++R A+ W L
Sbjct: 2 FIGGRWVAPSGSETIDVVSPATEEVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPAE 61
Query: 96 RGEIVRQIGDALRHKLVPLGQLVSLEMGK-ILAEGIGEVQEFIDICDYAVGLSRTYSGSI 154
R ++R++ DAL + L +L + E G I + + Y L+R +
Sbjct: 62 RAAVLRRLADALEARADELARLWTAENGMPISWSRRAQGPGPAALLRYYAALARDFP--- 118
Query: 155 LPSERPG------HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
RPG V E P+GVV I +N P+ + A AL
Sbjct: 119 FEERRPGSGGGHVLVRRE---PVGVVAAIVPWNAPLFLAALKIAPALA 163
Score = 71.1 bits (175), Expect = 2e-13
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G+FVEPT+ + ++ R+ E F P++ V P+D D+A+ N+ GLS S++T DV
Sbjct: 357 GWFVEPTLFADVDNDMRIAQEEIFGPVLSVIPYDDEDDAVRIANDSDYGLSGSVWTADV- 415
Query: 321 NLFKWLGPQGSD------CGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
+G G + VN + G FGG K +G GRE G
Sbjct: 416 -------ERGLAVARRIRTGTVGVNGFR--LDFGAPFGGFKQSGIGREGG 456
Score = 45.3 bits (108), Expect = 4e-05
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 184 VAVYGWNAAIALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQR 243
V+ G AA + R ++ LELGG +A IV +DADL+ A LV A GQ
Sbjct: 219 VSFTGSTAAGRRIAAVCGERLARVTLELGGKSAAIVLDDADLDAAVPGLVPASLMNNGQV 278
Query: 244 CTTTRRL 250
C R+
Sbjct: 279 CVALTRI 285
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 73.4 bits (181), Expect = 4e-14
Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 52 IPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKL 111
P TGE +A+V D +RAA AWAA P R ++ + D +
Sbjct: 34 REVTAPFTGEPLATVPVSTAADVEAAFARARAAQRAWAATPVRERAAVLLRFHDLVLENR 93
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTY---SGSIL-PSERPGHVLL-- 165
L LV LE GK EV D A+ +R Y + +L P R G + +
Sbjct: 94 EELLDLVQLETGKARRHAFEEV------LDVALT-ARYYARRAPKLLAPRRRAGALPVLT 146
Query: 166 ---ENWNPLGVVGIISAFNFPVA 185
E P GVVG+IS +N+P+
Sbjct: 147 KTTELRQPKGVVGVISPWNYPLT 169
Score = 68.4 bits (168), Expect = 2e-12
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 262 YFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTN 321
F EPT++TG+ + + ETF P+V V+P +DEA+ N+ GL++S++T D
Sbjct: 373 LFYEPTVLTGVTPDMELAREETFGPVVSVYPVADVDEAVERANDTPYGLNASVWTGDTAR 432
Query: 322 LFKWLGPQGSDCGLINVN---IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVT 378
+ + G +NVN G+ + GG K +G GR G++ +Y T+
Sbjct: 433 GRA-IAAR-IRAGTVNVNEGYAAAWGS-VDAPMGGMKDSGLGRRHGAEGLLKYTESQTIA 489
Score = 57.6 bits (140), Expect = 4e-09
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG N +IV +DADL+ A V AC AGQ C + R+++H+ D FV
Sbjct: 260 LELGGKNPMIVLDDADLDKAAAGAVRACFSNAGQLCISIERIYVHESIYDE---FVR 313
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 72.9 bits (180), Expect = 6e-14
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
A E I INP+T E I +V G D R + ++R A+ AW+A R ++ +I +A
Sbjct: 11 AGTETIDVINPATEEVIGTVPLGTAADVDRAVAAARRAFPAWSATSVEERAALLERIAEA 70
Query: 107 LRHKLVPLGQLVSLEMG--KILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVL 164
+ L Q ++LEMG LA +V I A + + ER G+ L
Sbjct: 71 YEARADELAQAITLEMGAPITLARAA-QVGLGIGHLRAAADALKDFEF----EERRGNSL 125
Query: 165 LENWNPLGVVGIISAFNFPV 184
+ P+GV G+I+ +N+P+
Sbjct: 126 VV-REPIGVCGLITPWNWPL 144
Score = 55.6 bits (135), Expect = 2e-08
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD-- 318
GYFV+PT+ + + + E F P++ + P+D DEAI N+ GL+ +++ D
Sbjct: 352 GYFVKPTVFADVTPDMTIAREEIFGPVLSIIPYDDEDEAIAIANDTPYGLAGYVWSADPE 411
Query: 319 ----VTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
V + G +++N G FGG K +G GRE G
Sbjct: 412 RARAVARRLR--------AGQVHIN--GAAFNPGAPFGGYKQSGNGREWG 451
Score = 35.2 bits (82), Expect = 0.049
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
LELGG +A I+ +DADL A V AC +GQ C R+ + + +
Sbjct: 238 LELGGKSANIILDDADLEKAVPRGVAACFANSGQSCNAPTRMLVPRSRYAE 288
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 72.2 bits (177), Expect = 8e-14
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYF+EPTI T + + ++V E F P+V V F + +EAI N+ GL++++FT ++
Sbjct: 364 GYFIEPTIFTDVTEDMKIVKEEIFGPVVAVIKFKTEEEAIKRANDSTYGLAAAVFTNNIN 423
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
N + G + VN N FGG K +G GRE G + + Y + V IN
Sbjct: 424 NAIR--VANALKAGTVWVNC-YNLLHHQVPFGGYKQSGIGRELGEYALENYTQIKAVHIN 480
Score = 56.8 bits (137), Expect = 7e-09
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 34 SVNPGVYDGTSW--KANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAAL 91
G++ + +G + NPSTG+ I + + D +E + AA+ L
Sbjct: 4 EQPTGLFINGEFVDSVHGGTVKVYNPSTGKLITKIAEATEADVDIAVEVAHAAFETDWGL 63
Query: 92 --PAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGK-ILAEGIGEVQEFIDICDYAVGLSR 148
+RG + ++ D + L L + +L+ GK +VQ D Y G +
Sbjct: 64 KVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFRYYGGWAD 123
Query: 149 TYSGSILP--SERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
G ++ ++ + E P+GV G I +NFP+ + W A AL
Sbjct: 124 KIHGQVIETDIKKLTYTRHE---PIGVCGQIIPWNFPLLMCAWKIAPAL 169
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 72.1 bits (177), Expect = 9e-14
Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 92/245 (37%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL---------FLHK----- 254
LELGG + IIV +D DL+ A + +F C T GQ C+ T RL FL K
Sbjct: 259 LELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRLLVHERIASEFLEKLVKWA 318
Query: 255 ------------------------KKI------------------DRP-----GYFVEPT 267
+K+ RP G+F+EPT
Sbjct: 319 KNIKISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGFFIEPT 378
Query: 268 IVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD------VTN 321
I+T + + ++ E F P++ V F + DEAI N+ GL+ ++ + D V+
Sbjct: 379 IITDVTTSMQIWREEVFGPVLCVKTFSTEDEAIELANDSHYGLAGAVISNDLERCERVSE 438
Query: 322 LFKWLGPQGSDCGLINVN--------IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCR 373
F G++ +N P +GG K +G GRE G + Y
Sbjct: 439 AF--------QAGIVWINCSQPCFCQAP---------WGGIKRSGFGRELGEWGLENYLS 481
Query: 374 RSTVT 378
VT
Sbjct: 482 VKQVT 486
Score = 70.1 bits (172), Expect = 4e-13
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 38 GVYDGTSWKA--NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAA-----WAA 90
++ G W+ G+ IP +NP+T ETI + +D +E++R A+ WA
Sbjct: 9 QLFIGGEWREPVLGKRIPVVNPATEETIGDIPAATAEDVDAAVEAARKAFKRNKGKDWAR 68
Query: 91 LPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGL---- 146
R + +R I + + L +L +L+ GK L E ++ + +Y L
Sbjct: 69 TTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEAAWDMDDVAGCFEYYADLAEAL 128
Query: 147 -SRTYSGSILPSER-PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
++ + LP E G+VL PLGVVG+I+ +N+P+ + W A AL
Sbjct: 129 DAKQKAPVSLPMETFKGYVL---KEPLGVVGLITPWNYPLLMATWKVAPAL 176
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 71.8 bits (176), Expect = 1e-13
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 3/164 (1%)
Query: 40 YDGTSWKANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGE 98
G W E + S++P E + + + + + +E++ AA+ W P R
Sbjct: 22 VIGGEWVDTKERMVSVSPFAPSEVVGTTAKADKAEAEAALEAAWAAFKTWKDWPQEDRAR 81
Query: 99 IVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDY-AVGLSRTYSGSILPS 157
++ + D LR + L ++ E+GK E I +V E ID Y A R ++
Sbjct: 82 LLLKAADLLRRRRRELIATLTYEVGKNWVEAIDDVAEAIDFIRYYARAALRLRYPAVEVV 141
Query: 158 ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNA-AIALVGVAV 200
PG + LG +IS +NFPVA++ A VG V
Sbjct: 142 PYPGEDNESFYVGLGAGVVISPWNFPVAIFTGMIVAPVAVGNTV 185
Score = 48.7 bits (116), Expect = 3e-06
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPI--VYVFPFDSLDEAITWNNEV 306
+L L K+++ GYFV PT+V +P +R+ E F P+ V + D EA+ N
Sbjct: 366 QLVLGGKRLEGEGYFVAPTVVEEVPPKARIAQEEIFGPVLSVIRYKDDDFAEALEVANST 425
Query: 307 KQGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIG-GAFGGEKYTGGGRESG 364
GL+ ++++ +L + + G + +N GA +G FGG K +G ++G
Sbjct: 426 PYGLTGGVYSRKREHL-EEARRE-FHVGNLYINRKITGALVGVQPFGGFKLSGTNAKTG 482
Score = 45.3 bits (107), Expect = 4e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 201 QSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
Q+ F +L +E GG NAIIV+E AD L + +V + G GQ+C+ RL L + +
Sbjct: 260 QTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQKCSAASRLILTQGAYEP 318
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 70.6 bits (173), Expect = 3e-13
Identities = 101/477 (21%), Positives = 177/477 (37%), Gaps = 161/477 (33%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
A+G+ + +P TGE IA + +G+ +D ++++R A+ W + RG I+ +
Sbjct: 33 ASGKTFETRDPRTGEVIARIAEGDKEDVDLAVKAAREAFDHGPWPRMSGFERGRIMMKFA 92
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYS-------GSILPS 157
D + + L L +++ GK+ A G + +DI A GL R Y+ G L
Sbjct: 93 DLIEEHIEELAALDTIDAGKLFALG-----KAVDIPA-AAGLLRYYAGAADKIHGETLKM 146
Query: 158 ERP--GHVLLEN---------WN------------------------------------- 169
R G+ L E WN
Sbjct: 147 SRQLQGYTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQTPLSALFYAH 206
Query: 170 -------PLGVVGIISAFNFPVAVYGWNAAIA-------------------LVGVAVQSR 203
P GV+ +++ F P A AAIA ++ A S
Sbjct: 207 LAKLAGVPDGVINVVTGFG-PTA----GAAIASHMDVDKVSFTGSTEVGRKIMQAAATSN 261
Query: 204 FGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH---------- 253
++ LELGG + +++ +DAD+++A + G+ C + R+++
Sbjct: 262 LKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQEGIYDEFVKK 321
Query: 254 -------------------------KKKIDRPGYFVE------PTIVTG----------- 271
K++ ++ ++E T++TG
Sbjct: 322 LVEKAKDWVVGDPFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYI 381
Query: 272 -------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK--DVTNL 322
+ + ++ E F P++ + F +++EAI N K GL++ I TK DV N
Sbjct: 382 EPTIFTDVTEDMKIAQDEIFGPVMSLMKFKTVEEAIKKANNTKYGLAAGIVTKDLDVANT 441
Query: 323 FKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCR-RSTVT 378
+ G I VN + FGG K +G GR+ G D+ +Y + +S VT
Sbjct: 442 VS----RSIRAGTIWVNC-YFAFDPDCPFGGYKMSGFGRDQGMDALDKYLQVKSVVT 493
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 70.3 bits (172), Expect = 4e-13
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 42 GTSWKANGEIIPSINPSTGETI-ASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIV 100
G S+KA+GE P NP+ I V N+ I+S++ A+ W A PA R +
Sbjct: 43 GHSYKADGEAQPVTNPADRRDIVGQVFHANLAHVQAAIDSAQQAFPTWNATPAKERAAKL 102
Query: 101 RQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP 160
++ D L + L L E GK + I EV+E +D C Y R +L
Sbjct: 103 DRLADLLELHMPELMALCVREAGKTIHNAIAEVREAVDFCRYYAKQVR----DVLGEFSV 158
Query: 161 GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
GV IS +NFP+A++ + AL
Sbjct: 159 --------ESRGVFVCISPWNFPLAIFTGQISAALA 186
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 70.1 bits (172), Expect = 4e-13
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
N + P+INP+TGE +ASV Q +D + ++R A+ +W+ALP R + +I
Sbjct: 34 ENRKSFPTINPATGEVLASVLQAEEEDVDAAVAAARTAFESWSALPGHVRARHLYRIARH 93
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSG--SILPSERPGHVL 164
++ L SL+ GK I E ++ DI ++G +L +E G
Sbjct: 94 IQKHQRLFAVLESLDNGK----PIRESRD-CDI-PLVARHFYHHAGWAQLLDTELAG--- 144
Query: 165 LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
W P+GVVG I +NFP+ + W AL
Sbjct: 145 ---WKPVGVVGQIVPWNFPLLMLAWKICPAL 172
Score = 65.9 bits (161), Expect = 1e-11
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G F PT+ T +P SR+ E F P++ V F + EA+ N GL++S+++++++
Sbjct: 365 GPFYPPTLFTNVPPASRIAQEEIFGPVLVVLTFRTAKEAVALANNTPYGLAASVWSENLS 424
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRS 375
+ + G++ +N N + FGG + +G GRE G + +Y R S
Sbjct: 425 LALE-VALS-LKAGVVWIN-GHNLFDAAAGFGGYRESGFGREGGKEGLYEYLRPS 476
Score = 38.1 bits (89), Expect = 0.006
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL 250
KL LELGG + IV +DADL+ A + +V A GQ C RL
Sbjct: 251 KLSLELGGKSPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRL 295
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 69.5 bits (170), Expect = 8e-13
Identities = 66/282 (23%), Positives = 100/282 (35%), Gaps = 78/282 (27%)
Query: 56 NPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLG 115
P G + +V + +V D R A A L R I+ + L + +
Sbjct: 23 YPYNGTVVGTVPKASVDDVRRAF---AIAAAYRPTLTRYERSAILDRAAALLAARKEEIS 79
Query: 116 QLVSLEMGKILAEGIGEVQEFIDICDYAVGLS-----RTYSGSILPSERPGHVLLENWNP 170
L++LE G + + EV D+ +A + + +S + P + V +
Sbjct: 80 DLITLESGLSKKDSLYEVGRVADVLTFAAAEALRDDGQIFSCDLTPHGKARKVFTQREPL 139
Query: 171 LGVVGIISAFNFP---VA------------------------------------------ 185
LGV+ I+ FN P VA
Sbjct: 140 LGVISAITPFNHPMNQVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYEAGLPPQML 199
Query: 186 --VYGWNAAIA----------LV----GVAVQSR------FGKLLLELGGNNAIIVNEDA 223
V G IA LV GVA+ + + +LELGGN+ +IV EDA
Sbjct: 200 QVVTGDPREIADELITNPHVDLVTFTGGVAIGKYIAARAGYRRQVLELGGNDPLIVMEDA 259
Query: 224 DLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
DL+ A V +GQRCT +R+ + + DR F E
Sbjct: 260 DLDRAADLAVKGSYKNSGQRCTAVKRMLVQESVADR---FTE 298
Score = 61.8 bits (150), Expect = 2e-10
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQ 308
RL L R G PT++ + + +V ETF P+ V F +D+AI +N
Sbjct: 344 RLLLGNV---RDGALYAPTVLDRVDPSMTLVREETFGPVSPVIRFCDIDDAIRISNSTAY 400
Query: 309 GLSSSIFTKDVTNLFKWLGPQGSDCGLINV-NIPTNGAEIGGAFGGEKYTGGGRESG-SD 366
GLSS + T + + +++ G +NV +P E+ FGG K +G G + G +
Sbjct: 401 GLSSGVCTNRLDYITRFI--AELQVGTVNVWEVPGYRLEL-TPFGGIKDSGLGYKEGVQE 457
Query: 367 SWKQYCRRSTVTI 379
+ K + T ++
Sbjct: 458 AMKSFTNLKTYSL 470
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 69.0 bits (169), Expect = 9e-13
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K ++ GY+ PT++ + ++H ETF P++ V FD+L+EAI N+ GL+SSI
Sbjct: 285 KAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEAIAMANDSDYGLTSSI 344
Query: 315 FTKDVTNLFK 324
+T+++ K
Sbjct: 345 YTQNLNVAMK 354
Score = 56.3 bits (136), Expect = 1e-08
Identities = 32/96 (33%), Positives = 44/96 (45%)
Query: 101 RQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP 160
R+I +R + + L+ E GKI EV D DY +R Y G I+ S+RP
Sbjct: 2 RKIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRP 61
Query: 161 GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
G +L LGV I +NFP + A AL+
Sbjct: 62 GENILLFKRALGVTTGILPWNFPFFLIARKMAPALL 97
Score = 44.7 bits (106), Expect = 5e-05
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
K+ LELGG IV +DADL+LA + +V + +GQ C R+++ K D+ FV
Sbjct: 176 KVCLELGGKAPAIVMDDADLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQ---FVN 232
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 69.2 bits (170), Expect = 9e-13
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
Query: 50 EIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALR 108
+ I SINP+ E + V + + + ++++ A+ W R I+ + +R
Sbjct: 50 DKIVSINPANKSEVVGRVSKATKELAEKAMQAALEAFETWKKWSPEDRARILLRAAAIIR 109
Query: 109 HKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENW 168
+ + E GK AE + E ID +Y + RPG +
Sbjct: 110 RRKHEFSAWLVKEAGKPWAEADADTAEAIDFLEYYARQMLKLADGKPVESRPGEHNRYFY 169
Query: 169 NPLGVVGIISAFNFPVAVYGWNAAIALV 196
PLGV +IS +NFP A+ A+V
Sbjct: 170 IPLGVGVVISPWNFPFAIMAGMTLAAIV 197
Score = 51.1 bits (123), Expect = 5e-07
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQ 308
RL L + D GYF++PTI + +R++ E F P+V D A+ N +
Sbjct: 382 RLVLGGEGDDSKGYFIQPTIFADVDPKARIMQEEIFGPVVAFIKAKDFDHALEIANNTEY 441
Query: 309 GLSSSIFTKDVTNL 322
GL+ ++ + + +L
Sbjct: 442 GLTGAVISNNREHL 455
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
+++ E+GG +AI+V+EDADL+LA + +V + G +GQ+C+ R +H+ D
Sbjct: 282 RVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQKCSACSRAIVHEDVYDE 335
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 68.3 bits (167), Expect = 2e-12
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 258 DRP-GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT 316
DR G+FVEPT++ GL +N+RV E F P++ V D D+A+ N+ GLS ++F
Sbjct: 359 DRDRGFFVEPTVIAGLDNNARVAREEIFGPVLTVIAHDGDDDAVRIANDSPYGLSGTVFG 418
Query: 317 KDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA-------FGGEKYTGGGRESGSDSWK 369
D G +NVN GG FGG K +G GRE G ++
Sbjct: 419 ADPERAAAVA--ARVRTGTVNVN--------GGVWYSADAPFGGYKQSGIGREMGVAGFE 468
Query: 370 QY 371
+Y
Sbjct: 469 EY 470
Score = 48.6 bits (116), Expect = 4e-06
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 41 DGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGE 98
DG + P++NP+T E + D I ++R A+ W+ A R
Sbjct: 6 DGKLVAGSAGTFPTVNPATEEVLGVAADATAADMDAAIAAARRAFDETDWSRDTA-LRVR 64
Query: 99 IVRQIGDALRHKLVPLGQLVSLEMG--KILAEGIGEVQEFIDICDYAVGLSRTYS----- 151
+RQ+ DALR + L +L E+G ++L G +++ +D +A L+ +Y+
Sbjct: 65 CLRQLRDALRAHVEELRELTIAEVGAPRMLTAG-AQLEGPVDDLGFAADLAESYAWTTDL 123
Query: 152 GSILPSERPGHVLLENWNPLGVVGIISAFNFP 183
G P P L +GVVG I+ +NFP
Sbjct: 124 GVASPMGIPTRRTLRR-EAVGVVGAITPWNFP 154
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 67.9 bits (166), Expect = 2e-12
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 35 VNPGVY----DGTSWK--ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAW 88
++ VY DG W+ ++G+ + NPST +T VQ ++ ++ +ES++AA AW
Sbjct: 11 LDGDVYKYYADGE-WRTSSSGKSVAITNPSTRKTQYKVQACTQEEVNKAMESAKAAQKAW 69
Query: 89 AALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAV--GL 146
A P +R E++ + L+ P+ + + E+ K + + EV D+ Y G+
Sbjct: 70 AKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGV 129
Query: 147 SRTYSGSILPSER-PGH----VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALVGVAV 200
G L S+ PG+ L + PLGVV I FN+PV N A++ + A+
Sbjct: 130 RILGEGKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYPV-----NLAVSKIAPAL 183
Score = 43.2 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 197 GVAVQSRFG--KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCT 245
G+A+ + G L +ELGG +A IV EDADL+LA ++ +GQRCT
Sbjct: 249 GIAISKKAGMVPLQMELGGKDACIVLEDADLDLAAANIIKGGFSYSGQRCT 299
Score = 39.7 bits (93), Expect = 0.002
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 259 RPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
R G + P ++ + + R+ E F P++ V +S++E I N GL +FT+D
Sbjct: 368 REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRD 427
Query: 319 V 319
+
Sbjct: 428 I 428
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 67.8 bits (166), Expect = 3e-12
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 38 GVYDGTSWKA--NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPR 95
+ W A GE + NP G+ + + + +D ++++ A+ W
Sbjct: 2 DNFINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTAEDVDLAVDAAHEAFKTWGKTSVAE 61
Query: 96 RGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSI 154
R I+ +I D + L L +L+ GK + E + ++ ID Y G+ R GS+
Sbjct: 62 RANILNKIADRIEENLELLAVAETLDNGKPIRETLAADIPLAIDHFRYFAGVIRAQEGSL 121
Query: 155 --LPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ + + E PLGVVG I +NFP+ + W A AL
Sbjct: 122 SEIDEDTLSYHFHE---PLGVVGQIIPWNFPLLMAAWKLAPAL 161
Score = 66.2 bits (162), Expect = 7e-12
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYF EPT++ G ++ R+ E F P++ V F +EAI N+ + GL ++T+D+
Sbjct: 363 GYFYEPTLIKGGNNDMRIFQEEIFGPVLAVITFKDEEEAIAIANDTEYGLGGGVWTRDIN 422
Query: 321 NLFKWLGPQGSDCGLINVN----IPTNGAEIGGAFGGEKYTGGGRE 362
+ +G G + VN P FGG K +G GRE
Sbjct: 423 RALRV--ARGIQTGRVWVNCYHQYPA-----HAPFGGYKKSGIGRE 461
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 67.8 bits (166), Expect = 3e-12
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 45 WKA-NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQI 103
W+A GE S NP+T E + + + ++RAA+ AWA L R +V++
Sbjct: 7 WRAGQGESFSSTNPATQEVLWQGAAASAAQVEAAVAAARAAFPAWARLSLEERIAVVQRF 66
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP--- 160
L + L ++++ E GK L E EV I ++ +G SE P
Sbjct: 67 AALLEERKEALARVIARETGKPLWETRTEVASMIGKVAISIKAYHERTGE---SENPMPD 123
Query: 161 GHVLLENWNPLGVVGIISAFNFP 183
G +L + P GVV + +NFP
Sbjct: 124 GRAVLRH-RPHGVVAVFGPYNFP 145
Score = 52.4 bits (126), Expect = 2e-07
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 207 LLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFL 252
L LE+GGNN +IV+E AD++ A ++ + +AGQRCT RRL +
Sbjct: 238 LALEMGGNNPLIVDEVADIDAAVHLIIQSAFISAGQRCTCARRLLV 283
Score = 42.8 bits (101), Expect = 2e-04
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 263 FVEPTI--VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
+ P I VTG+ + + E F P++ V +D DEAI N + GLS+ + + D
Sbjct: 355 LLTPGIIDVTGV---AELPDEEHFGPLLQVIRYDDFDEAIAIANNTRFGLSAGLLSDDRE 411
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRES 363
++L G++N N P GA FGG +G R S
Sbjct: 412 LYDRFL--LEIRAGIVNWNKPLTGASSAAPFGGIGASGNHRPS 452
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 67.5 bits (165), Expect = 3e-12
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K+ D PG+F PT++T + + R+ E F P+ ++ +DEAI N GL S+
Sbjct: 335 KRPDGPGWFYPPTVITDITPDMRLYTEEVFGPVASLYRVADIDEAIEIANATTFGLGSNA 394
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVN-IPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCR 373
+T+D +++ + G + +N + + E+ FGG K +G GRE + +++C
Sbjct: 395 WTRDEAEQERFI--DDLEAGQVFINGMTVSYPELP--FGGVKRSGYGRELSAHGIREFCN 450
Query: 374 RSTVTI 379
TV I
Sbjct: 451 IKTVWI 456
Score = 44.3 bits (105), Expect = 7e-05
Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 32/149 (21%)
Query: 52 IPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKL 111
I +INP+TGET+ + + I + A + + +R D L +
Sbjct: 3 IATINPATGETVKTFTALTDDEVDAAIARAHARFRDYRTTTFAQRARWANAAADLLEAEA 62
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDY-----------------AVGLSRTYSGSI 154
+ L++LEMGK LA E + Y AVG SR Y
Sbjct: 63 DQVAALMTLEMGKTLASAKAEALKCAKGFRYYAEHAEALLADEPADAAAVGASRAYV--- 119
Query: 155 LPSERPGHVLLENWNPLGVVGIISAFNFP 183
+ PLGVV + +NFP
Sbjct: 120 ------------RYQPLGVVLAVMPWNFP 136
Score = 39.0 bits (91), Expect = 0.003
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH 253
K +LELGG++ IV ADL+ A + V A GQ C +R +H
Sbjct: 227 KTVLELGGSDPFIVMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVH 274
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 67.5 bits (165), Expect = 3e-12
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G+F+EPT++ + ++ RV E F P+ V F + DE I N+ + GL +FTKD+
Sbjct: 358 GFFIEPTLIVNVTNDMRVAQEEIFGPVATVIKFKTEDEVIDMANDSEYGLGGGVFTKDIN 417
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRES 363
+ + + G + VN N G FGG K +G GRE+
Sbjct: 418 RALRV--ARAVETGRVWVNT-YNQIPAGAPFGGYKKSGIGRET 457
Score = 65.9 bits (161), Expect = 8e-12
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
++GE I S NP+ GET++ + D R +++++ A+ W R I+ +I D
Sbjct: 13 SSGETIDSYNPANGETLSEITDATDADVDRAVKAAQEAFKTWRKTTVAERANILNKIADI 72
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
+ L + +L+ GK + E +DI A R ++G I E +++ E
Sbjct: 73 IDENKELLAMVETLDNGKPIRETRA-----VDI-PLAADHFRYFAGVIRAEEGSANMIDE 126
Query: 167 NW------NPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ P+GVVG I +NFP + W A AL
Sbjct: 127 DTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAPAL 161
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 67.3 bits (165), Expect = 3e-12
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 14/146 (9%)
Query: 45 WKA-NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQI 103
W A GE S NP +GE + + ++RAA+ AWA L R IV +
Sbjct: 9 WIAGQGEAFESRNPVSGEVLWQGNDATAAQVDAAVRAARAAFPAWARLSFEERQAIVERF 68
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLS------RTYSGSILPS 157
L L ++++ E GK L E EV I+ + +S RT S
Sbjct: 69 AALLEENKEELAEVIARETGKPLWEAATEVTAMIN----KIAISIQAYHERTGEKR---S 121
Query: 158 ERPGHVLLENWNPLGVVGIISAFNFP 183
E + P GVV + +NFP
Sbjct: 122 EMADGAAVLRHRPHGVVAVFGPYNFP 147
Score = 49.2 bits (118), Expect = 2e-06
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 205 GKLL-LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFL 252
K+L LE+GGNN ++++E AD++ A ++ + +AGQRCT RRL +
Sbjct: 237 EKILALEMGGNNPLVIDEVADIDAAVHLIIQSAFISAGQRCTCARRLLV 285
Score = 39.9 bits (94), Expect = 0.002
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 263 FVEPTI--VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
+ P I VTG+ + + E F P++ V +D DEAI N + GLS+ + + D
Sbjct: 357 LLTPGIIDVTGV---AELPDEEYFGPLLQVVRYDDFDEAIRLANNTRFGLSAGLLSDDRE 413
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRES 363
+ ++L G++N N P GA FGG +G R S
Sbjct: 414 DYDQFL--LEIRAGIVNWNKPLTGASSAAPFGGVGASGNHRPS 454
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 66.8 bits (164), Expect = 4e-12
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G + PTI+ + + + E+F P+V + +EA+ N+ + GLS+++FT+D+
Sbjct: 316 GTSMPPTILDNVTPDMDIYSEESFGPVVSIIRVKDEEEAVRIANDSEYGLSAAVFTRDLA 375
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTI 379
+ + + G +++N T E GG K +G GR +G ++ +TI
Sbjct: 376 RALA-VAKR-IESGAVHINGMTVHDEPTLPHGGVKSSGYGRFNGKWGIDEFTETKWITI 432
Score = 51.8 bits (125), Expect = 3e-07
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 208 LLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LLELGG IV EDADL+ A +F +GQ C +T R+ +H+ D FVE
Sbjct: 208 LLELGGKAPAIVLEDADLDAAANAALFGAFLNSGQICMSTERIIVHESIADE---FVE 262
Score = 44.9 bits (107), Expect = 4e-05
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 73 DYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGE 132
D + +E++ AA+ AW+ P R +I+ + D L + + + E G
Sbjct: 1 DADQAVEAAAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETG-----ATAA 55
Query: 133 VQEF-----IDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 184
F + A L G +PS++PG + + P+GVV I+ +N PV
Sbjct: 56 WAGFNVDLAAGMLREAASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPV 112
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 64.6 bits (158), Expect = 2e-11
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPL 114
I+P G IA +++ +E +RAA W A+P R IV + + L +
Sbjct: 1 ISPIDGSVIAERPLASLEAVRAALERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEI 60
Query: 115 GQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVV 174
+ ++ +MG+ +A+ GE++ ++ Y + ++ I E+ G PLGVV
Sbjct: 61 AEELTWQMGRPIAQAGGEIRGMLERARYMISIAEEALADIRVPEKDGFERYIRREPLGVV 120
Query: 175 GIISAFNFP--VAVYGWNAAIA--LVGVAV 200
II+ +N+P AV NA I L G AV
Sbjct: 121 LIIAPWNYPYLTAV---NAVIPALLAGNAV 147
Score = 54.6 bits (132), Expect = 4e-08
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
G ++ PT++T + H+ RV+ ETF P+V + S EAI N+ + GL++S++TKD
Sbjct: 336 GGAYLAPTVLTNVDHSMRVMREETFGPVVGIMKVKSDAEAIALMNDSEYGLTASVWTKD 394
Score = 44.2 bits (105), Expect = 8e-05
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 197 GVAVQ----SRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFL 252
G A+Q RF K+ LELGG + V DADL+ A + LV +GQ C + R+++
Sbjct: 207 GRAIQRAAAGRFIKVGLELGGKDPAYVRPDADLDAAAESLVDGAFFNSGQSCCSIERIYV 266
Query: 253 HKKKIDRPGYFVE 265
H+ D FVE
Sbjct: 267 HESIYDA---FVE 276
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 64.8 bits (157), Expect = 2e-11
Identities = 35/148 (23%), Positives = 69/148 (46%)
Query: 48 NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
+ I INP+T E ++ V +++ + +++ A+ W P R ++ + + +
Sbjct: 127 SSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQRVMLKFQELI 186
Query: 108 RHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN 167
R + L ++ E GK L + G++ +++ ++A G++ G LP+ G
Sbjct: 187 RKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVDTYSI 246
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIAL 195
PLGV I FNFP + W +A+
Sbjct: 247 REPLGVCAGICPFNFPAMIPLWMFPVAV 274
Score = 47.0 bits (111), Expect = 1e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 249 RLFLHKKKIDRPGY----FVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNN 304
+L L + I PGY F+ PTI++G+ + E F P++ +S DEAI+ N
Sbjct: 454 KLLLDGRDIVVPGYEKGNFIGPTILSGVTPDMECYKEEIFGPVLVCMQANSFDEAISIIN 513
Query: 305 EVKQGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIP 341
+ K G ++IFT K+ + G I +N+P
Sbjct: 514 KNKYGNGAAIFTSSGAAARKF--QMDIEAGQIGINVP 548
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 64.6 bits (158), Expect = 3e-11
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G++ PT++ + + ++ E F P++ V +EA+ N + GL +S+F KD+
Sbjct: 346 GHYFPPTLLVDVTPDMKIAQEEVFGPVMVVMKASDDEEAVEIANSTEYGLGASVFGKDIK 405
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGA-------FGGEKYTGGGRESGSDSWKQYCR 373
+ + Q G++ +N + G FGG K +G GR +G + + C
Sbjct: 406 RA-RRIASQLE-TGMVAIN------DFGVNYYVQQLPFGGVKGSGFGRFAGEEGLRGLCN 457
Query: 374 RSTVT 378
+VT
Sbjct: 458 PKSVT 462
Score = 41.9 bits (99), Expect = 5e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 207 LLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
++LELGG + IV +DADL+ ++ ++GQ C R+ +H+K D+
Sbjct: 229 VVLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYDK 281
Score = 39.2 bits (92), Expect = 0.003
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 56 NPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD-ALRHKLVPL 114
+P+TG+ + SV +D I ++RAA WA R +++R + L ++ +
Sbjct: 2 DPATGQHLGSVPADTPEDVDEAIAAARAAQREWAKTSFAERRKVLRSLLKYILENQEE-I 60
Query: 115 GQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE------N 167
++ + GK + + +GE+ + C+ + ++ P RPG +L+
Sbjct: 61 CRVACRDTGKTMVDASLGEI---LVTCEKIRWTLKHGEKALRPESRPGGLLMFYKRARVE 117
Query: 168 WNPLGVVGIISAFNFP 183
+ PLGVVG I ++N+P
Sbjct: 118 YEPLGVVGAIVSWNYP 133
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 62.3 bits (152), Expect = 2e-10
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 47 ANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD 105
A GE+ P INP+ + + V++ + + +ES+ A W A P R I+ + D
Sbjct: 656 AAGEMSPVINPADPRDIVGYVREATPAEVEQALESAVNAAPIWFATPPAERAAILERAAD 715
Query: 106 ALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
+ ++ L L+ E GK + I EV+E AV R Y+G +
Sbjct: 716 LMEAQMQTLMGLLVREAGKTFSNAIAEVRE-------AVDFLRYYAGQVRDDFDN----- 763
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ PLG V IS +NFP+A++ A AL
Sbjct: 764 DTHRPLGPVVCISPWNFPLAIFTGQVAAAL 793
Score = 31.5 bits (72), Expect = 0.92
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 207 LLLELGGNNAIIVNEDADLNLAQQC---LVFACCGTAGQRCTTTRRLFLHKKKIDR 259
L+ E GG NA+IV+ A L +Q ++ + +AGQRC+ R L L DR
Sbjct: 880 LIAETGGQNAMIVDSSA---LTEQVVADVLASAFDSAGQRCSALRVLCLQDDVADR 932
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 61.1 bits (149), Expect = 3e-10
Identities = 53/269 (19%), Positives = 79/269 (29%), Gaps = 120/269 (44%)
Query: 170 PLGVVGIISAFNFPV-------------------------------------------AV 186
PLGVV II +N+PV A
Sbjct: 108 PLGVVLIIGPWNYPVLLALSPLVGAIAAGCTVVLKPSELTPHTAALLAELVPKYLDPDAF 167
Query: 187 YGWNAAIALVGVAVQSRFGK-----------------------LLLELGGNNAIIVNEDA 223
+ ++ +F K + LELGG + +IV ++A
Sbjct: 168 QVVQGGVPETTALLEQKFDKIFYTGSGRVGRIIAEAAAKHLTPVTLELGGKSPVIVTKNA 227
Query: 224 DLNLAQQCLVFACCGTAGQ--------------------RCTTTRRLF------------ 251
DL LA + +++ G AGQ F
Sbjct: 228 DLELAAKRILWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEFYPGGANASPDYT 287
Query: 252 ----------LHKK------KI------DRPGYFVEPTIVTGLPHNSRVVHRETFAPIVY 289
L K+ D F+ PTIV+ + + ++ E F P++
Sbjct: 288 RIVNPRHFNRLKSLLDTTKGKVVIGGEMDEATRFIPPTIVSDVSWDDSLMSEELFGPVLP 347
Query: 290 VFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
+ D LDEAI N L+ IFT D
Sbjct: 348 IIKVDDLDEAIKVINSRDTPLALYIFTDD 376
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 60.5 bits (147), Expect = 5e-10
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 40 YDGTSWKA--NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRG 97
+ G W A GE +I P TG+ V + +D ++++ AA AW R
Sbjct: 4 FIGGEWVAPVKGEYFDNITPVTGKVFCEVPRSTAEDIELALDAAHAAKEAWGKTSVAERA 63
Query: 98 EIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSILP 156
I+ +I D + L L + + GK + E + ++ ID Y G R GSI
Sbjct: 64 NILNKIADRMEANLEMLAVAETWDNGKPVRETLAADIPLAIDHFRYFAGCIRAQEGSI-- 121
Query: 157 SERPGHVLLENWN-PLGVVGIISAFNFPVAVYGWNAAIAL 195
SE + + +++ PLGVVG I +NFP+ + W A AL
Sbjct: 122 SEIDENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLAPAL 161
Score = 55.2 bits (133), Expect = 2e-08
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GY+V T G + R+ E F P++ V F +EA+ N+ GL + ++T+D
Sbjct: 364 GYYVPTTFKGG--NKMRIFQEEIFGPVLAVTTFKDEEEALEIANDTLYGLGAGVWTRDGN 421
Query: 321 NLFKWLGPQGSDCGLINVN----IPTNGAEIGGAFGGEKYTGGGRES 363
++ +G G + N P AFGG K +G GRE+
Sbjct: 422 TAYRM--GRGIQAGRVWTNCYHLYPA-----HAAFGGYKQSGIGREN 461
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 55.6 bits (135), Expect = 2e-08
Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 52/162 (32%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRC----------------------TT 246
LELGG + IV+EDA+L LA + +V+ AGQ C
Sbjct: 205 LELGGKSPCIVDEDANLKLAAKRIVWGKFLNAGQTCVAPDYVLVHESVKEKFIKELKEEI 264
Query: 247 T----------------------RRL--FLHKKKI------DRPGYFVEPTIVTGLPHNS 276
RL L KI DR ++EPTI+ + +
Sbjct: 265 KKFYGEDPLESPDYGRIINEKHFDRLAGLLDNGKIVFGGNTDRETLYIEPTILDNVTWDD 324
Query: 277 RVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
V+ E F PI+ V +D+LDEAI + L+ +F++D
Sbjct: 325 PVMQEEIFGPILPVLTYDTLDEAIEIIKSRPKPLALYLFSED 366
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 50.8 bits (122), Expect = 6e-07
Identities = 48/235 (20%), Positives = 81/235 (34%), Gaps = 71/235 (30%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQ-------------------------- 242
LELGG + +IV++ +L +A + + + AGQ
Sbjct: 214 LELGGKSPVIVDKSCNLKVAARRIAWGKFLNAGQTCVAPDYVLVHRSIKDKFIEALKEAI 273
Query: 243 ------------------RCTTTRRL----FLHKKKI------DRPGYFVEPTIVTGLPH 274
T+RL H K+ D +V PTI+
Sbjct: 274 KEFFGEDPKKSEDYSRIVNEFHTKRLAELIKDHGGKVVYGGEVDIENKYVAPTIIVNPDL 333
Query: 275 NSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQGS--- 331
+S ++ E F PI+ + ++++DE + + N + L+ F +D + L S
Sbjct: 334 DSPLMQEEIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDKRHKELVLENTSSGAV 393
Query: 332 ---DC--GLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTINH 381
DC L+N N+P FGG +G G G + + V
Sbjct: 394 VINDCVFHLLNPNLP---------FGGVGNSGMGAYHGKYGFDTFSHPKPVLNKS 439
Score = 31.9 bits (73), Expect = 0.67
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 130 IGEVQEFI-DICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 184
+ E++ + + +Y G P + +++ E PLGVV +I A+N+P+
Sbjct: 73 VAEIEHLLKHLDEYLKPEKVDTVGVFGPGK--SYIIPE---PLGVVLVIGAWNYPL 123
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 49.5 bits (119), Expect = 2e-06
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 256 KIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIF 315
+ D ++ PT++T + + +++ E F P++ + ++ LDE I + N + L+ +F
Sbjct: 311 QFDAAQRYIAPTVLTNVTPDMKIMQEEIFGPVLPIITYEDLDEVIEYINAKPKPLALYVF 370
Query: 316 TKD 318
+KD
Sbjct: 371 SKD 373
Score = 38.4 bits (90), Expect = 0.005
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR 259
LELGG + IV+E ADL A + + + AGQ C +F+H+ D
Sbjct: 205 LELGGKSPTIVDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESVKDA 255
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 49.5 bits (118), Expect = 2e-06
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
A E +++P T +A + +G D R + ++R + W+ +R ++ ++
Sbjct: 32 AENETFETVDPVTQAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLA 91
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICD-------YAVGLSRTYSGSILPS 157
D + L L +L+ GK + + + DI YA + + Y G + +
Sbjct: 92 DLMEAHAEELALLETLDTGKPIRHSLRD-----DIPGAARAIRWYAEAIDKVY-GEVATT 145
Query: 158 ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
++ P+GV+ I +NFP+ + W AL
Sbjct: 146 SSHELAMIVR-EPVGVIAAIVPWNFPLLLTCWKLGPALA 183
Score = 49.1 bits (117), Expect = 2e-06
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 250 LFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQG 309
L L + + PTI + N+ + E F P++ V F S ++A+ N+ + G
Sbjct: 366 LLLDGRNAGLAAA-IGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLANDSQYG 424
Query: 310 LSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWK 369
L ++++T+D++ + + G + VN N ++ FGG K +G GR+ + +
Sbjct: 425 LGAAVWTRDLSRAHRM--SRRLKAGSVFVN-NYNDGDMTVPFGGYKQSGNGRDKSLHALE 481
Query: 370 QYCRRSTVTI 379
++ T+ I
Sbjct: 482 KFTELKTIWI 491
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 49.4 bits (119), Expect = 2e-06
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 252 LHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLS 311
+ ++D+ ++ PTI+ + +S ++ E F PI+ + +D LDEAI + N + L+
Sbjct: 300 VIGGQVDKEERYIAPTILDDVSPDSPLMQEEIFGPILPILTYDDLDEAIEFINSRPKPLA 359
Query: 312 SSIFTKD 318
+F++D
Sbjct: 360 LYLFSED 366
Score = 39.4 bits (93), Expect = 0.003
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRC 244
LELGG + IV++DA+L +A + + + AGQ C
Sbjct: 205 LELGGKSPCIVDKDANLEVAARRIAWGKFLNAGQTC 240
Score = 33.7 bits (78), Expect = 0.17
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 170 PLGVVGIISAFNFPV 184
PLGVV II +N+P+
Sbjct: 100 PLGVVLIIGPWNYPL 114
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 48.2 bits (115), Expect = 4e-06
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 57/168 (33%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK-------------- 254
LE GG +IV+ ADL+ LV AGQ C + +R+F+
Sbjct: 230 LEHGGAAPVIVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVPAEIADDFAQRLAAAA 289
Query: 255 ---------------------KKIDRPGYFVEP------TIVTG---------------- 271
+++DR +V ++ G
Sbjct: 290 EKLVVGDPTDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRLSDTTYAPTVLLD 349
Query: 272 LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
P +++V +E F P+V V+ +D LDEAI N + +++FTKD+
Sbjct: 350 PPRDAKVSTQEIFGPVVCVYSYDDLDEAIAQANSLPVAFQAAVFTKDL 397
Score = 45.9 bits (109), Expect = 2e-05
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 20/156 (12%)
Query: 55 INPSTGETIASVQQGNVQDYHRCIESSRAAY---AAWAALPAPRRGEIVRQIGDALRHKL 111
+NP + I V + + ++++ A + W LPA R I+ ++ D + +
Sbjct: 4 VNPFDLKPIGEVPTVDWAAIDKALDTAHALFLDRNNW--LPAHERIAILERLADLMEERA 61
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILP-------SERPGHVL 164
L L++ E GK L + EV ID + A G +P + R
Sbjct: 62 DELALLIAREGGKPLVDAKVEVTRAIDGVELAADELGQLGGREIPMGLTPASAGRIAFTT 121
Query: 165 LENWNPLGVVGIISAFNFPVAVYGWNAAIALVGVAV 200
E P+GVV ISAFN P+ N + V A+
Sbjct: 122 RE---PIGVVVAISAFNHPL-----NLIVHQVAPAI 149
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 47.6 bits (114), Expect = 8e-06
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 261 GYFVEPTIVTGL-PHNSRVVHR-ETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
G F PT++ P + VH E F P+ + P+DSL EAI + L +S+ T D
Sbjct: 374 GAFFPPTLLLCDDPDAATAVHDVEAFGPVATLMPYDSLAEAIELAARGRGSLVASVVTND 433
Query: 319 VTNL 322
Sbjct: 434 PAFA 437
Score = 33.8 bits (78), Expect = 0.17
Identities = 43/173 (24%), Positives = 61/173 (35%), Gaps = 46/173 (26%)
Query: 40 YDGTSWKAN-GEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPR--- 95
Y W A G+ + TGE +A V + D+ + AYA PA R
Sbjct: 4 YVAGQWHAGTGDGRTLHDAVTGEVVARVSSEGL-DFAAAV-----AYAREKGGPALRALT 57
Query: 96 ---RGEIVRQIGDAL-RHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYS 151
R +++ + L K L +L A G +IDI D +G Y+
Sbjct: 58 FHERAAMLKALAKYLMERK----EDLYALS----AATGATRRDSWIDI-DGGIGTLFAYA 108
Query: 152 G---SILPSERPGHVLLEN----------------WNPLGVVGI-ISAFNFPV 184
LP+ H L+E P V + I+AFNFPV
Sbjct: 109 SLGRRELPNA---HFLVEGDVEPLSKDGTFVGQHILTPRRGVAVHINAFNFPV 158
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 45.7 bits (109), Expect = 3e-05
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 263 FVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT--KDVT 320
++ PT++T + + V+ E F PI+ + ++LDEAI + N ++ L+ +F+ K V
Sbjct: 311 YIAPTVLTDVKPSDPVMQEEIFGPILPIVTVNNLDEAIEFINSREKPLALYVFSNNKKVI 370
Query: 321 NLF 323
N
Sbjct: 371 NKI 373
Score = 31.0 bits (71), Expect = 1.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 167 NWNPLGVVGIISAFNFPVAV 186
PLGVV II A+N+P+ +
Sbjct: 97 YKEPLGVVLIIGAWNYPLQL 116
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 44.0 bits (105), Expect = 1e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 266 PTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAI 300
PT+V + + RV+ E F PI+ + +DSLDEAI
Sbjct: 322 PTLVLNVTDDMRVMQEEIFGPILPILTYDSLDEAI 356
Score = 40.9 bits (97), Expect = 8e-04
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG + I+ DADL A + + F AGQ C + + + K++ FV
Sbjct: 206 LELGGKSPAIIAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVPEDKLEE---FVA 259
Score = 37.5 bits (88), Expect = 0.011
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 170 PLGVVGIISAFNFPV 184
PLGVVGII +N+P+
Sbjct: 101 PLGVVGIIVPWNYPL 115
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 43.6 bits (103), Expect = 1e-04
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 258 DRPGYFVEPTIVTGLPHNSRVVHRETFAPI--VYVFPFDSLDEAITW--NNEVKQGLSSS 313
D GYFVEPT+V ++ E F P+ VYV+P D E I ++ GL+ +
Sbjct: 392 DSVGYFVEPTVVESKDPQEPLMKEEIFGPVLTVYVYPDDKYKE-ILDLVDSTTSYGLTGA 450
Query: 314 IFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSD 366
+F KD + + G +N GA + G++ GG R SG++
Sbjct: 451 VFAKDRDAILEADKVLRFAAGNFYINDKPTGAVV-----GQQPFGGARASGTN 498
Score = 41.7 bits (98), Expect = 5e-04
Identities = 47/175 (26%), Positives = 66/175 (37%), Gaps = 19/175 (10%)
Query: 37 PGVYDGTSWKANGEIIPSINPST-GETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPR 95
P V G +GE I ++P +A + ++ +E++ A W+ LP
Sbjct: 33 PLVIGGEEVWTSGERIYQVSPHNHQAVLAKATNATEELANKAVEAALDAKKEWSLLPFYD 92
Query: 96 RGEIVRQIGDAL----RHKLVP---LGQLVSLEMGK--ILAEGIGEVQEFIDICDYAVGL 146
R I + D L R +++ LGQ K AE I V E ID +
Sbjct: 93 RAAIFLKAADLLSGPYRAEILAATMLGQ------SKTVYQAE-IDAVAELIDFFRFNAKY 145
Query: 147 SRTYSGSILPSERPGHVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALVGVAV 200
+R P PG + PL G V IS FNF A AL+G V
Sbjct: 146 ARELYEQ-QPISAPGEWNRTEYRPLEGFVYAISPFNFTAIAGNLAGAPALMGNTV 199
Score = 28.2 bits (63), Expect = 9.3
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 204 FGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKK 256
F +++ E GG + +V+ AD+ + GQ+C+ RL++
Sbjct: 277 FPRIVGETGGKDFHVVHPSADVEHVVSGTIRGAFEYQGQKCSACSRLYVPHSL 329
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 42.2 bits (100), Expect = 4e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 258 DRPGYFVEPTIVTGLPHNSRVVHRETFAPI--VYVFPFDSLDEAI-TWNNEVKQGLSSSI 314
D GYFVEPT++ +++ E F P+ VYV+P +E + + L+ +I
Sbjct: 392 DSVGYFVEPTVIETTDPKHKLMTEEIFGPVLTVYVYPDSDFEETLELVDTTSPYALTGAI 451
Query: 315 FTKD 318
F +D
Sbjct: 452 FAQD 455
Score = 28.3 bits (64), Expect = 8.3
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 27/138 (19%)
Query: 60 GETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL----RHKLVP-- 113
+A+ + + IE++ A WA +P R I + D L R++L
Sbjct: 57 AHVLATYHYADAALVEKAIEAALEARKEWARMPFEDRAAIFLKAADLLSGKYRYELNAAT 116
Query: 114 -LGQLVSLEMGK--ILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWN- 169
LGQ GK AE I E ID + V Y+ + +++P WN
Sbjct: 117 MLGQ------GKNVWQAE-IDAACELIDFLRFNV----KYAEELY-AQQPLSSPAGVWNR 164
Query: 170 ----PL-GVVGIISAFNF 182
PL G V +S FNF
Sbjct: 165 LEYRPLEGFVYAVSPFNF 182
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 38.8 bits (90), Expect = 0.004
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 203 RFGKLLLELGGNNAIIVNEDADL--NLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRP 260
+ ++ LEL G N ++ DA +A QC V +GQ+CT LF+ + P
Sbjct: 200 KQARIYLELAGFNWKVLGPDAQAVDYVAWQC-VQDMTACSGQKCTAQSMLFVPENWSKTP 258
Query: 261 GY 262
Sbjct: 259 LV 260
Score = 32.6 bits (74), Expect = 0.34
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 76 RCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGK--ILAEGIGEV 133
R + ++ + A L P+R + + +I L K + L GK + AE I
Sbjct: 3 RALLAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKGWMFAENICGD 62
Query: 134 QEFIDICDYAVGLSRTY---SGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 190
Q V S G+ L W P G V +I AFNFP+ +
Sbjct: 63 Q-VQLRARAFVIYSYRIPHEPGNHLGQGLKQQSHGYRW-PYGPVLVIGAFNFPLWIPLLQ 120
Query: 191 AAIAL 195
A AL
Sbjct: 121 LAGAL 125
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 37.9 bits (89), Expect = 0.009
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 261 GYFVEPTIVT-GLPHNSRVVHR-ETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
G F PT++ P + VH E F P+ + P+D LDEAI K L +S+ T D
Sbjct: 378 GAFFPPTLLYCDDPLEAPAVHDVEAFGPVSTLMPYDDLDEAIELAARGKGSLVASLVTAD 437
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 37.4 bits (87), Expect = 0.011
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 252 LHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLS 311
+H + D ++EPTI+ P +S ++ E F P++ + ++E+I N + L+
Sbjct: 306 VHGGERDEKNLYIEPTILLDPPLDSSIMTEEIFGPLLPIITVKKIEESIEIINSRPKPLA 365
Query: 312 SSIFTKD 318
+ +FTK+
Sbjct: 366 AYVFTKN 372
Score = 29.3 bits (66), Expect = 3.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 170 PLGVVGIISAFNFP 183
PLGVV +ISA+NFP
Sbjct: 101 PLGVVLVISAWNFP 114
Score = 28.9 bits (65), Expect = 4.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLV---FACCGTAGQRC 244
LELGG +IV+ DL +A + + + C GQ C
Sbjct: 206 LELGGKCPVIVDSTVDLKVAVRRIAGGKWGCN--NGQAC 242
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 35.9 bits (83), Expect = 0.035
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 32/146 (21%)
Query: 191 AAIALVGVAVQSRFGKLLLEL---------GGNN------AIIVNEDADL---NLAQQCL 232
A IA+ V V+ RF +L+EL G N A I+N+ NL +
Sbjct: 251 ACIAIDYVLVEERFAPILIELLKSTIKKFFGENPRESKSMARILNKKHFQRLSNLLKDPR 310
Query: 233 VFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFP 292
V A +H ID F+EPTI+ P +S ++ E F P++ +
Sbjct: 311 VAAS--------------IVHGGSIDEKKLFIEPTILLNPPLDSDIMTEEIFGPLLPIIT 356
Query: 293 FDSLDEAITWNNEVKQGLSSSIFTKD 318
++++I + N + L+ FT +
Sbjct: 357 VKKIEDSIAFINSKPKPLAIYAFTNN 382
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 35.7 bits (83), Expect = 0.040
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 198 VAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKI 257
+AV S L+ + N A ++N++ L + L T + +KK +
Sbjct: 247 IAVDSVADYLIAAMQRNGAYVLNDEQAEQLLEVVL------------LTNKGATPNKKWV 294
Query: 258 DR-PGYFVE----------PTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEV 306
+ ++ I+ + V E PI+ V + DEAI E+
Sbjct: 295 GKDASKILKAAGIEVPADIRLIIVETDKDHPFVVEEQMMPILPVVRVKNFDEAIELAVEL 354
Query: 307 KQGL--SSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYT 357
+ G ++ I +K+V NL K + + N P+ A +G GGE YT
Sbjct: 355 EHGNRHTAIIHSKNVENLTKM--ARAMQTTIFVKNGPS-YAGLG--VGGEGYT 402
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 34.7 bits (80), Expect = 0.076
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 261 GYFVEPTI-VTGLPHNSRVVH-RETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
V PT+ P + VH E F P+ + P+ A+ + L +S+++ D
Sbjct: 377 AACVGPTLLGASDPDAATAVHDVEVFGPVATLLPYRDAAHALALARRGQGSLVASVYSDD 436
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 33.1 bits (75), Expect = 0.28
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 258 DRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK 317
DR + PTI+ +P +S ++ E F P++ + ++L+E+ + L++ +FT
Sbjct: 323 DRENLKIAPTILLDVPLDSLIMSEEIFGPLLPILTLNNLEESFDVIRSRPKPLAAYLFTH 382
Query: 318 DVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTV 377
+ L + S G++ +I + A FGG +G G G S+ + + V
Sbjct: 383 N-KKLKERFAATVSAGGIVVNDIAVHLALHTLPFGGVGESGMGAYHGKFSFDAFSHKKAV 441
Score = 29.2 bits (65), Expect = 4.0
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 195 LVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCG-TAGQRCTT 246
++ A ++LELGG + ++V+ D DL + + ++ G GQ C +
Sbjct: 203 VIMAAAAKHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIAGKWGCNNGQACIS 255
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 32.5 bits (74), Expect = 0.41
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 210 ELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID 258
E G N ++V+ DL + L F+ +GQ CTT + +++ + I
Sbjct: 305 EKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQMCTTPQNIYVPRDGIQ 353
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 32.5 bits (74), Expect = 0.42
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 210 ELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID 258
E G N +I+ D + L F+ +GQ CTTT+ + + + I
Sbjct: 305 EKAGVNTVIIESTDDYKAMLRNLAFSLSLYSGQMCTTTQAILVPRDGIR 353
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 31.3 bits (71), Expect = 0.94
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 261 GYFVEPTIVTGLPHNSRVVHR-ETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
G F PT++ + VH E F P+ FP+ EA L +++ T D
Sbjct: 367 GAFFPPTLLLAEDPWAGAVHATEAFGPVATFFPYGDRAEAARLAARGGGSLVATLATSD 425
Score = 29.0 bits (65), Expect = 4.6
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 215 NAIIVNEDA-----DLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID 258
NA I+ EDA + +L Q +V AGQ+CT RR+ + K ++
Sbjct: 258 NAAILGEDATPDEPEFDLFAQEIVRELTIKAGQKCTAIRRVIVPKALLE 306
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 30.6 bits (70), Expect = 1.3
Identities = 46/166 (27%), Positives = 62/166 (37%), Gaps = 36/166 (21%)
Query: 213 GNNAIIVNEDADLNLAQQCLVFACCGTAGQR---CTTTRRLFLHKKKIDRP--------- 260
GN I V+E ADL+ A + +V A QR C L +H+
Sbjct: 226 GNCHIYVDESADLDKALKIIVNAKT----QRPSVCNAAETLLVHRAIAKSFLPKLANALQ 281
Query: 261 GYFVE----PTIVTGLPHNSRVVHRETF-----APIVYVFPFDSLDEAITWNNEVKQGLS 311
VE + LP + E + I+ V DSLDEAI N G S
Sbjct: 282 EAGVELRGDAEALALLPDAVKPATEEDWDTEYLDLILAVKVVDSLDEAIAHINTYGSGHS 341
Query: 312 SSIFTKDVTNLFKWLGPQGSDCGLINVNIPTN---------GAEIG 348
+I T+D N +++ D + VN T GAEIG
Sbjct: 342 DAIITEDYANAERFV--NEVDSAAVYVNASTRFTDGGQFGLGAEIG 385
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 30.2 bits (69), Expect = 2.5
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 342 TNGAEIGGAFGGE--KYTGGGRES 363
TNG I F GE KY GGGR S
Sbjct: 694 TNGVGITSFFVGEGIKYVGGGRIS 717
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 29.4 bits (67), Expect = 4.0
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 24/137 (17%)
Query: 76 RCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEG------ 129
++ AA+ ++ AL RR + I D + L E G L E
Sbjct: 3 AAAAAAAAAFESYRALSPARRAAFLEAIADEIEALGDELVARAHAETG--LPEARLQGEL 60
Query: 130 ---IGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWN------PLGVVGIISAF 180
G+++ F D+ ++ + + P L + PLG V + A
Sbjct: 61 GRTTGQLRLFADLVR-----EGSWLDARIDPADPDRQPLPRPDLRRMLVPLGPVAVFGAS 115
Query: 181 NFPVA--VYGWNAAIAL 195
NFP+A V G + A AL
Sbjct: 116 NFPLAFSVAGGDTASAL 132
>gnl|CDD|132150 TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This
model describes a subfamily of MEROPS peptidase family
M42, a glutamyl aminopeptidase family that also includes
the cellulase CelM from Clostridium thermocellum and
deblocking aminopeptidases that can remove acylated
amino acids. Members of this family occur in a three
gene cassette with an amidotransferase (TIGR03104)in the
asparagine synthase (glutamine-hydrolyzing) family, and
a probable acetyltransferase (TIGR03103) in the GNAT
family.
Length = 343
Score = 28.9 bits (65), Expect = 4.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 97 GEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILP 156
G +VR++ D R +LVP+G + AEG V F D S + G+ILP
Sbjct: 71 GAMVRELKDNGRLELVPIGHWSAR-----FAEG-ARVTIFTD--------SGEFRGTILP 116
Query: 157 SERPGHV 163
+ GH
Sbjct: 117 LKASGHA 123
>gnl|CDD|221215 pfam11771, DUF3314, Protein of unknown function (DUF3314). This
small family contains human, mouse and fish members but
the function is not known.
Length = 162
Score = 28.4 bits (63), Expect = 5.0
Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 4 SVRHLQCLRFRSYSDSVSKYPFLKELGLSGSVNPGVYDGTSWKANGEIIPSINPSTGETI 63
SV H +F VS + + S G+Y W GE
Sbjct: 17 SVSHFAIGQFDIRGHEVSIFRYCAPTPYLASGFTGLYKCMRWNVEAPG---EAAGAGEAS 73
Query: 64 ASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVR 101
+ Y C E +R L A GE R
Sbjct: 74 DGTEY-----YFLCYEDTREPAKEAGPLGADSCGEAQR 106
>gnl|CDD|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.
Length = 871
Score = 29.1 bits (66), Expect = 5.3
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 61 ETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPR----RGEIV 100
E + V + N DY I + Y + L PR GEI+
Sbjct: 712 EELREVVRTNKLDY-ELIAKRKEEYELYEKLTPPRVMTSDGEII 754
>gnl|CDD|115934 pfam07310, PAS_5, PAS domain. This family contains a number of
hypothetical bacterial proteins of unknown function
approximately 200 residues long. This region is is
distantly similar to other PAS domains.
Length = 137
Score = 27.7 bits (62), Expect = 6.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 80 SSRAAYAAWAAL----PAPRRGEI 99
S+RA +A W L APRR +I
Sbjct: 5 STRALFAYWNELRGGRAAPRRSDI 28
>gnl|CDD|237395 PRK13482, PRK13482, DNA integrity scanning protein DisA;
Provisional.
Length = 352
Score = 28.2 bits (64), Expect = 6.9
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 95 RRGEIVRQIGDALRHKLVPLGQ---LVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTY 150
+R E+VR+I + + +V LG L+SL++ ++LA G+ E +E + I DY+
Sbjct: 187 QRLEMVRRISEEIEGYVVELGTEGRLISLQLEELLA-GVEEERELL-IRDYSQEKDEDP 243
>gnl|CDD|216115 pfam00780, CNH, CNH domain. Domain found in NIK1-like kinase,
mouse citron and yeast ROM1, ROM2. Unpublished
observations.
Length = 266
Score = 28.0 bits (63), Expect = 9.1
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 288 VYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQGSDC 333
+YV+P +LD + Q L TK + F G G
Sbjct: 57 LYVYPLSALDSKELSSKSAPQKLPE---TKGCS-FFARAGYCGGRF 98
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 28.2 bits (63), Expect = 9.6
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 45 WKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAA--YAAWAALPAPRR----GE 98
WK ++P G+ SV + + + ++S R L P R G+
Sbjct: 7 WKGASNYTTLLDPLNGDKFISVPDTDEDEINEFVDSLRQCPKSGLHNPLKNPERYLLYGD 66
Query: 99 IVRQIGDALRHKLVP--LGQLVSLEMGKILAEGIGEV---QEFI-----DICDYAVGLSR 148
+ ++ LR V +L+ K A+ +GEV ++F+ D + L+R
Sbjct: 67 VSHRVAHELRKPEVEDFFARLIQRVAPKSDAQALGEVVVTRKFLENFAGDQVRF---LAR 123
Query: 149 TY--SGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAV 186
++ G + G+ W P G V II+ FNFP+ +
Sbjct: 124 SFNVPGDHQGQQSSGY----RW-PYGPVAIITPFNFPLEI 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,539,263
Number of extensions: 2024210
Number of successful extensions: 2230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2039
Number of HSP's successfully gapped: 327
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)