RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3652
(394 letters)
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 271 bits (695), Expect = 7e-87
Identities = 111/182 (60%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 15 SYSDSVSKYPFLKELGLSGSVNPGVYDGTSWKANGEIIPSINPSTGETIASVQQGNVQDY 74
+ + +Y +LKELGL N GVY+G SW GE+I + P+ E IA V+Q +V DY
Sbjct: 4 TLLINQPQYAWLKELGLR-EENEGVYNG-SWGGRGEVITTYCPANNEPIARVRQASVADY 61
Query: 75 HRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQ 134
++ +R A+ WA +PAP+RGEIVRQIGDALR K+ LG LVSLEMGKIL EG+GEVQ
Sbjct: 62 EETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEGVGEVQ 121
Query: 135 EFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIA 194
E++DICDYAVGLSR G ILPSER GH L+E WNP+G+VGII+AFNFPVAVYGWN AIA
Sbjct: 122 EYVDICDYAVGLSRMIGGPILPSERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIA 181
Query: 195 LV 196
++
Sbjct: 182 MI 183
Score = 226 bits (579), Expect = 1e-69
Identities = 93/127 (73%), Positives = 111/127 (87%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K +DRPG +VEPTIVTGL H++ + H ETFAPI+YVF F + +E WNNEVKQGLSSSI
Sbjct: 373 KVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQGLSSSI 432
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
FTKD+ +F+WLGP+GSDCG++NVNIPT+GAEIGGAFGGEK+TGGGRESGSD+WKQY RR
Sbjct: 433 FTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMRR 492
Query: 375 STVTINH 381
ST TIN+
Sbjct: 493 STCTINY 499
Score = 105 bits (264), Expect = 6e-25
Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 195 LVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK 254
VG+ VQ RFG+ LLELGGNNAII EDADL+L +FA GTAGQRCTT RRLF+H+
Sbjct: 254 QVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHE 313
Query: 255 KKIDRPGYFVE 265
D V
Sbjct: 314 SIHDE---VVN 321
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 137 bits (346), Expect = 3e-35
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 1/156 (0%)
Query: 42 GTSWKANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIV 100
++IP++NP+ E + + Q + I +++AA+ AW R E +
Sbjct: 537 NGKEVRTNDLIPTVNPNKPSEVLGQICQAGTTEVGDAIAAAKAAFPAWRDTDPRTRAEYL 596
Query: 101 RQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP 160
+ A R +L L LE+GK + +V E ID +Y P
Sbjct: 597 LKAAQAARKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLEYYAREMIRLGQPQRVGHAP 656
Query: 161 GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
G + + P GV +I+ +NFP+A+ A+ A+V
Sbjct: 657 GELNHYFYEPKGVAAVIAPWNFPLAISMGMASAAIV 692
Score = 105 bits (265), Expect = 8e-25
Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 67/250 (26%)
Query: 201 QSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDR- 259
Q+ K++ E+GG NAII+++DADL+ A ++++ G GQ+C+ R+ + D+
Sbjct: 772 QANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVYDKF 831
Query: 260 ------------------PGYFVEPTI-----------VTGLPHNSRVVHRET------- 283
P ++ V++
Sbjct: 832 IERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGY 891
Query: 284 -FAP--------------------IVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNL 322
++ V D+AI W N + L+ IF++ +L
Sbjct: 892 FVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHL 951
Query: 323 FKWLGPQGSDCGLINVNIPTNGAEIGGA-FGGEKYTGGG-RESGSDSWKQYCRRSTVTIN 380
K + G + +N GA + FGG + +G G + G D + VT N
Sbjct: 952 AKAR--REFRVGNLYINRNNTGALVERQPFGGARMSGVGTKAGGPDYLLHFMDPRVVTEN 1009
Query: 381 HGKEITLAQG 390
T+ +G
Sbjct: 1010 -----TMRRG 1014
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 134 bits (339), Expect = 4e-35
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 2/154 (1%)
Query: 45 WKANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQI 103
W E + S+NPS E + + + + +E++ A+ W P R ++ +
Sbjct: 46 WVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKA 105
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPS-ERPGH 162
+R + L + E+GK E +V E ID +Y + Y + PG
Sbjct: 106 AALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGE 165
Query: 163 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ PLG +I+ +NFPVA++ +
Sbjct: 166 DNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVA 199
Score = 101 bits (254), Expect = 1e-23
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K+++ GYF+ PT+ T +P +R+ E F P++ V EA+ N+ GL+ +
Sbjct: 390 KRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGV 449
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA-FGGEKYTGGGRESGS-DSWKQYC 372
+++ +L + G + N GA +G FGG K +G ++G+ D + +
Sbjct: 450 YSRKREHLEWAR--REFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFL 507
Query: 373 RRSTVTIN 380
V
Sbjct: 508 EMKAVAER 515
Score = 67.2 bits (165), Expect = 2e-12
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 201 QSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRP 260
Q+ F + +E GG NAIIV+E AD +LA + +V + G GQ+C+ RL L + +
Sbjct: 279 QTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEP- 337
Query: 261 GYFVE 265
+E
Sbjct: 338 --VLE 340
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 132 bits (335), Expect = 1e-34
Identities = 41/149 (27%), Positives = 65/149 (43%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ I +INP IA +Q ++ D E+++ A A WAA PA R I+ + +
Sbjct: 25 NSDRISTNINPYDDSVIAESKQASIADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAEL 84
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
L + + + E G ++ E+ +I + G I PS PG
Sbjct: 85 LEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVHGRISPSNTPGKENRV 144
Query: 167 NWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
GVVG+IS +NFP+ + + A AL
Sbjct: 145 YRVAKGVVGVISPWNFPLNLSIRSVAPAL 173
Score = 106 bits (267), Expect = 2e-25
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 258 DRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK 317
G V P + + + + + E F P++ V D A N GLS+++++K
Sbjct: 364 PIEGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWSK 423
Query: 318 DVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTV 377
D+ ++ D G++++N T E FGG K +G GR +G + +++ +
Sbjct: 424 DIDRAAQF--ALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGRFNGDWAIEEFTTDRWI 481
Query: 378 TINHG 382
I
Sbjct: 482 GIKRS 486
Score = 62.2 bits (152), Expect = 9e-11
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
+ LELGGN +V DAD++ A Q GQ C + R+ + D F+E
Sbjct: 256 TVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDE---FLE 312
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 132 bits (334), Expect = 3e-34
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 1/153 (0%)
Query: 45 WKANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQI 103
+ I S NP+ + + SV + N + I+S+ A+ W + R I+ +
Sbjct: 46 RVTTEDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQTWRNVNPEERANILVKA 105
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHV 163
+R + + E GK E + E ID +Y + RPG
Sbjct: 106 AAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQMIELNRGKEILSRPGEQ 165
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ P+GV IS +NF +A+ A +V
Sbjct: 166 NRYFYTPMGVTVTISPWNFALAIMVGTAVAPIV 198
Score = 114 bits (287), Expect = 6e-28
Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 62/254 (24%)
Query: 194 ALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH 253
A V Q+ ++++E+GG + ++V+ DADL+LA + ++ + G +GQ+C+ R +H
Sbjct: 271 AAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIH 330
Query: 254 KKKIDR-------------------PGYFV---------------------EPTIVTG-- 271
K D ++ E ++TG
Sbjct: 331 KDVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGE 390
Query: 272 ----------------LPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIF 315
L + ++ E F P+V + D A+ N + GL+ ++
Sbjct: 391 GDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVI 450
Query: 316 TKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA-FGGEKYTG-GGRESGSDSWKQYCR 373
T++ ++ + + G + N GA +G FGG K +G + G D + +
Sbjct: 451 TRNRAHIEQAK--REFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQ 508
Query: 374 RSTVTINHGKEITL 387
TV+ + + +
Sbjct: 509 AKTVSEMYAENLYF 522
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 127 bits (322), Expect = 6e-33
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 57/230 (24%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL---------FLHK-- 254
++LELGG ++ IV EDADL L + ++ G +GQRCT +R+ + K
Sbjct: 246 PIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIR 305
Query: 255 --------------------------KKID------------------RPGYFVEPTIVT 270
++ R G + P +
Sbjct: 306 EKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFD 365
Query: 271 GLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQG 330
+ + R+ E F P++ + S++EAI +N+ + GL +SIFT D F +
Sbjct: 366 KVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFG--IAEQ 423
Query: 331 SDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ G +++N T F G K +G G + S + +V +
Sbjct: 424 LEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFD 473
Score = 124 bits (314), Expect = 8e-32
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 45 WKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIG 104
WK + I P++G + SV + ++ S++ A AW AL R + ++
Sbjct: 13 WKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVA 72
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILP-----SER 159
D L +G ++S E+ K + EV +I +YA G +L +
Sbjct: 73 DILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAAS 132
Query: 160 PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
+ + P+G+V IS FN+PV + G A AL+
Sbjct: 133 KKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALI 169
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 126 bits (318), Expect = 3e-32
Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 57/240 (23%)
Query: 201 QSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL---------F 251
+++ ++LELGG + IV +DADL L +V +GQRCT +R+
Sbjct: 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVADQL 309
Query: 252 LHK----------------------------KKID------------------RPGYFVE 265
+ I R G +
Sbjct: 310 VANIKELVEQLTVGSPEDDADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLS 369
Query: 266 PTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKW 325
PT++ + RV E F P++ + +EAI+ +N+ GL +SIFTKD
Sbjct: 370 PTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAIN- 428
Query: 326 LGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTINHGKEI 385
+ + G +++N T F G K +G G + S R +N + +
Sbjct: 429 -IGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGVQGIKPSLLSMTRERVTVLNLAENL 487
Score = 122 bits (308), Expect = 8e-31
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 7/158 (4%)
Query: 45 WK--ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQ 102
W GE I P++G + S+ + ++ + I+ ++ A W P R +++
Sbjct: 20 WVESRTGERISISAPASGVALGSIPALSQEEVNDAIQGAKDAQKIWKIRPIHERVDLLYA 79
Query: 103 IGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSER--- 159
D L + +G+L+ E+ K IGEV DI + + +G L ++
Sbjct: 80 WADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADIIRHTADEALRLNGETLKGDQFKG 139
Query: 160 --PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ L PLGVV IS FN+PV + A AL
Sbjct: 140 GSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAPAL 177
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 125 bits (317), Expect = 4e-32
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
GE + S++P + S + + + ++R A+ AWA P +R E++ +
Sbjct: 17 GQGETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFPAWARRPLEQRIELLERFAAT 76
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
L+ + L +++ E GK L E EV ++ +V R +G +L
Sbjct: 77 LKSRADELARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGEKSGPLADATAVLR 136
Query: 167 NWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ P GVV + +NFP + + AL
Sbjct: 137 H-KPHGVVAVFGPYNFPGHLPNGHIVPAL 164
Score = 94.5 bits (236), Expect = 2e-21
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQ 308
+ L + + P I+ + + E F P++ V + AI N +
Sbjct: 348 QPLLAMTQPIDGAALLTPGILD-VSAVAERPDEEFFGPLLQVIRYSDFAAAIREANATQY 406
Query: 309 GLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
GL++ + + ++L S G++N N GA FGG +G R S
Sbjct: 407 GLAAGLLSDSRERFEQFL--VESRAGIVNWNKQLTGAASSAPFGGIGASGNHRPSA 460
Score = 63.7 bits (156), Expect = 3e-11
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHK 254
L LE+GGNN ++V E ADL+ A ++ + +AGQRCT RRL + +
Sbjct: 244 ILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQ 292
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 119 bits (300), Expect = 2e-29
Identities = 53/245 (21%), Positives = 84/245 (34%), Gaps = 69/245 (28%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLH------------ 253
L+ E GG NA+I + A +V + +AGQRC+ R LF+
Sbjct: 756 PLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVA 815
Query: 254 --------------------------KKKIDR------------------PGYFVEPTIV 269
K+++D G FV P I
Sbjct: 816 GAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIF 875
Query: 270 TGLPHNSRVVHRETFAPIVYV--FPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLG 327
+ E F PI++V + ++L+ + GL+ + ++ ++ +
Sbjct: 876 ELTEA--GQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAII- 932
Query: 328 PQGSDCGLINVNIPTNGAEIGGA-FGGEKYTG-GGRESGSDSWKQYCRRSTVTINHGKEI 385
G I VN GA +G FGG +G G + G ++ TVTIN
Sbjct: 933 -DRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGGPHYLARFATEQTVTIN----- 986
Query: 386 TLAQG 390
T A G
Sbjct: 987 TAAAG 991
Score = 107 bits (268), Expect = 3e-25
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 1/154 (0%)
Query: 44 SWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQI 103
+ + + + + + + H + ++RA +A W+ PA R + Q
Sbjct: 522 GARTALDQLLTDVKAETGDLKPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQA 581
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP-GH 162
L + L+ E GK L + + E++E D C Y R GS P G
Sbjct: 582 AHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGE 641
Query: 163 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALV 196
GV IS +NFP+A++ AL+
Sbjct: 642 SNALTMRGRGVFVAISPWNFPLAIFLGQVTAALM 675
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 113 bits (285), Expect = 8e-28
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 48 NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
N E + INP + E I + + ++ I+++ LP +R I+ I +
Sbjct: 10 NREDMDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQI 69
Query: 108 RHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN 167
+ K L ++++++ GK + + EV+ I A + + ++PS ++
Sbjct: 70 KEKKEELAKILAIDAGKPIKQARVEVERSIGTFKLAAFYVKEHRDEVIPS--DDRLIFTR 127
Query: 168 WNPLGVVGIISAFNFPVAVYGWNAAIAL 195
P+G+VG I+ FNFP+ + A A+
Sbjct: 128 REPVGIVGAITPFNFPLNLSAHKIAPAI 155
Score = 99.2 bits (248), Expect = 6e-23
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 60/236 (25%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL---------FLHK-- 254
K+ LELGG N IV +DADLN A L+ AGQ C + + F+
Sbjct: 237 KIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFV 296
Query: 255 ---------------------------KKID------------------RPGYFVEPTIV 269
+ ++ R PTI+
Sbjct: 297 NKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTIL 356
Query: 270 TGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQ 329
+ ++ + ETFAP++ + + +E I N + GL S+IFT D+ K+ +
Sbjct: 357 E-VDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKF--AE 412
Query: 330 GSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTINHGKEI 385
+ G + +N + + FGG K +G GRE + ++ T+ I+ + +
Sbjct: 413 NLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIISKAENL 468
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 111 bits (280), Expect = 4e-27
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
I +NP+T I+ + G +D + I+++ A W ALPA R +R+I
Sbjct: 19 RGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAG 78
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHV 163
+R + + L+ E GKI EV ++ID A R G I+ S+RPG
Sbjct: 79 IRERASEISALIVEEGGKIQQLAEVEVAFTADYIDY--MAEWARRYE-GEIIQSDRPGEN 135
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+L LGV I +NFP + A AL
Sbjct: 136 ILLFKRALGVTTGILPWNFPFFLIARKMAPAL 167
Score = 85.3 bits (212), Expect = 3e-18
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K ++ GY+ PT++ + ++H ETF P++ V FD+L++AI+ N+ GL+SSI
Sbjct: 356 KAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSI 415
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESG 364
+T+++ K + +G G +N G G + +G G G
Sbjct: 416 YTQNLNVAMKAI--KGLKFGETYINRENFEAMQ---GFHAGWRKSGIGGADG 462
Score = 46.0 bits (110), Expect = 1e-05
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
K+ LELGG IV +DADL LA + +V + +GQ C R+++ K D+ FV
Sbjct: 247 KVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQ---FVN 303
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 110 bits (277), Expect = 9e-27
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+G +NP I + + + ++ A WA R ++++
Sbjct: 19 ESGRTEDILNPYDQSVITTASLATGKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGY 78
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGL-SRTYSGSILPSERPGHVLL 165
L + +++ E G + + E+++ I I D A+ +PS+ G
Sbjct: 79 LHENRDDIIMMIARETGGTIIKSTIELEQTIAILDEAMTYTGELGGVKEVPSDIEGKTNK 138
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
PLGV+ IS FNFP+ + + A A+
Sbjct: 139 IYRLPLGVISSISPFNFPMNLSMRSIAPAI 168
Score = 93.8 bits (234), Expect = 4e-21
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 259 RPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
R G + P + G +NS++ E FAPI + S EAI N+ + GLSS++FT D
Sbjct: 358 RVGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSD 417
Query: 319 VTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVT 378
+ K+ D G+ +VN + AFGG K +G GR +++ ++
Sbjct: 418 LEKGEKF--ALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGRFGNPWVVEEFTVTKWIS 475
Query: 379 INHGK 383
I
Sbjct: 476 IQKQY 480
Score = 54.9 bits (133), Expect = 2e-08
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
++ LELGGNN V DAD++ A +F GQ C R+ +H+ D FVE
Sbjct: 249 RMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDE---FVE 305
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 109 bits (274), Expect = 2e-26
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 47 ANGEIIPSINPSTGETIA-SVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGD 105
+ + N TGE + + + ++ ++ + L +R ++R I
Sbjct: 4 QTDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIAS 63
Query: 106 ALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGS--------ILPS 157
L + + LE GE+ + + + S +
Sbjct: 64 ELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRA 123
Query: 158 ERPGHVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 195
P + LG V + A NFP+A G + A AL
Sbjct: 124 PLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASAL 163
Score = 81.6 bits (202), Expect = 5e-17
Identities = 31/233 (13%), Positives = 58/233 (24%), Gaps = 67/233 (28%)
Query: 209 LELGGNNAIIVNEDADLNLAQ--QCLVFACCGTAGQRCTTTRRLFLHKKKID-------- 258
ELG N + A A V + GQ CT +F
Sbjct: 252 GELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQ 311
Query: 259 ---------------------------------------------RPGYFVEPTIVTGLP 273
FV +
Sbjct: 312 SLIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQAESPCVASALFVTSSENW--- 368
Query: 274 HNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT--KDVTNLFKWLGPQGS 331
E F P + +++ + ++ + + L+++I +D + + +
Sbjct: 369 RKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEE 428
Query: 332 DCGLINVNIPTNGAEIGGA--FGGEK---YTGGGRESGSDSWKQYCRRSTVTI 379
G + N G E+G A GG G+++ ++ R V
Sbjct: 429 IAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVGAEAIHRWLR--PVAY 479
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 108 bits (273), Expect = 4e-26
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 5/156 (3%)
Query: 45 WKANGEIIPSINPSTGETIASVQQGNVQDYHRCIES-SRAAYAAWAALPAPRRGEIVRQI 103
W +G+ I +P TIA V + ++ R ++ + + +P R ++R+
Sbjct: 27 WGGSGQEIEVKSPIDLATIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKA 86
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP--- 160
D + L +++ + GK + +GEV+ +D A + G +P +
Sbjct: 87 ADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDT 146
Query: 161 -GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
L PLGVV I+ FN+P+ +
Sbjct: 147 LETEGLVRREPLGVVAAITPFNYPLFDAVNKITYSF 182
Score = 83.0 bits (206), Expect = 2e-17
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 261 GYFVEPTIVTGL---PHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTK 317
+V+PT V + + RE FAP+ LD+AI N GL +++F +
Sbjct: 371 PTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGR 430
Query: 318 DVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTV 377
DV + + + + G I +N FGG K +G RE + + T+
Sbjct: 431 DVVKIRR--AVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAVTAYKTI 488
Query: 378 TINHGKE 384
N+ +
Sbjct: 489 VFNYKGK 495
Score = 59.5 bits (145), Expect = 6e-10
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
+ ++ELGG + IV EDADL+LA + AGQRC + + + + VE
Sbjct: 259 QYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGK---LVE 315
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 108 bits (273), Expect = 4e-26
Identities = 35/170 (20%), Positives = 54/170 (31%), Gaps = 10/170 (5%)
Query: 41 DGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIV 100
G G I +P TG + V + + AA AL +R +
Sbjct: 13 AGQWIAGTGAGITLTDPVTGVALVRVSSEGLDLARAFSFAREDGGAALRALTYAQRAARL 72
Query: 101 RQIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERP 160
I L+ K + + G + ++ I Y L + +
Sbjct: 73 ADIVKLLQAKRGDYYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLGASLGEVHALRDGS 132
Query: 161 GHVLLENWN---------PLGVVGIISAFNFPVAVYGWNAAIALV-GVAV 200
L ++ + GV I+AFNFP AA AL+ GV V
Sbjct: 133 AESLSKDRSFSAQHVLSPTRGVALFINAFNFPSWGLWEKAAPALLSGVPV 182
Score = 74.3 bits (183), Expect = 1e-14
Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 261 GYFVEPTI--VTGLPHNSRVVHRETFAPIVYVFPFDSLD--------EAITWNNEVKQGL 310
V P + V + + + E F P+ V P+ A+ + L
Sbjct: 380 AACVAPHLFVVNDPDNATLLHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSL 439
Query: 311 SSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGA--------FGGEKYTGGGRE 362
+SI++ D +L + G ++ P+ G GG GGG E
Sbjct: 440 VASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGHGNVMPMSLHGGPGRAGGGEE 499
Query: 363 -SGSDSWKQYCRRSTVTIN 380
G + Y RRS +
Sbjct: 500 LGGLRALAFYHRRSAIQAA 518
Score = 57.7 bits (140), Expect = 3e-09
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 199 AVQSRFGKLLLELGGNNAIIVNEDAD-----LNLAQQCLVFACCGTAGQRCTTTRRLFLH 253
A R +L ++ N+ I+ DA +L + +V +GQ+CT RR F+
Sbjct: 249 AFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVP 308
Query: 254 KKKIDRPGYFVE 265
+ ++ +E
Sbjct: 309 EAALEP---VLE 317
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 104 bits (262), Expect = 9e-25
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ I ++PSTG+ I + G D +E ++AA AWA L A R ++R +
Sbjct: 25 NESDTIDILSPSTGKVIGEIPAGCKADAENALEVAQAAQKAWAKLTARTRQNMLRTFANK 84
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHV 163
+R L ++ E GK+L+ EV FID G ILPS+
Sbjct: 85 IRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDY--GCDNALTIE-GDILPSDNQDEK 141
Query: 164 LLENWNPLGVVGIISAFNFPVA 185
+ + P GVV I+A+NFP+A
Sbjct: 142 IYIHKVPRGVVVGITAWNFPLA 163
Score = 79.5 bits (197), Expect = 2e-16
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 253 HKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSS 312
+ G + EPT++ + ++ VVH ETF PI+ + S+++AI + N+ GLS+
Sbjct: 363 ATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQAIEFCNDSIYGLSA 422
Query: 313 SIFTKDVTNLFKWLGPQGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESGS 365
+ T+ N+ + + G + +N + G G K +G G E
Sbjct: 423 YVHTQSFANINQA--ISDLEVGEVYINRGMGEQHQ---GFHNGWKQSGFGGE-DG 471
Score = 45.2 bits (108), Expect = 2e-05
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
++LELGG ++V +DADL+ A + ++ GQ CT RL++H D F+
Sbjct: 253 PVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVYDE---FMA 309
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 103 bits (260), Expect = 2e-24
Identities = 66/269 (24%), Positives = 96/269 (35%), Gaps = 74/269 (27%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ +NP+T E + V +D +++ A+ W+ + PRR I+
Sbjct: 18 KTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQL 77
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
L L L+++E GK E +GEV I+ ++A G G L S +E
Sbjct: 78 LSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATD---VE 134
Query: 167 NWN---PLGVVGIISAFN---------FPVA----------------------------- 185
N P+GVVG I+ FN FP+A
Sbjct: 135 AANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKA 194
Query: 186 ---------VYGWN------------AAIALVG---VAVQ-----SRFGKLLLELGG-NN 215
VYG + AI+ VG V S K + L G N
Sbjct: 195 GLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKN 254
Query: 216 AIIVNEDADLNLAQQCLVFACCGTAGQRC 244
IV DA+L +V A G+AG+RC
Sbjct: 255 HTIVLNDANLEDTVTNIVGAAFGSAGERC 283
Score = 49.9 bits (120), Expect = 7e-07
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD-- 318
GYFV PTI + + E FAP++ V +L EAI N+ + + +FT +
Sbjct: 360 GYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSN 419
Query: 319 VTNLFKWLGPQGSDCGL--INVNIPTNGAEIGGAFGGEK--YTGGGRESGSDSWKQYCRR 374
F+ + D G+ IN+ +P A F G K + G +G DS Y R+
Sbjct: 420 AIRYFR----ENIDAGMLGINLGVPAPMAFFP--FSGWKSSFFGTLHANGKDSVDFYTRK 473
Query: 375 STVT 378
VT
Sbjct: 474 KVVT 477
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 103 bits (259), Expect = 2e-24
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 45 WKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIG 104
W P +P++G + V V++ + ++ A+ W + A R ++R+
Sbjct: 21 WLPAAATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWY 80
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPG 161
+ + L ++++ E GK L E GE+ F++ ++ R Y G I+ +
Sbjct: 81 NLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEW--FSEEARRVY-GDIIHTPAKD 137
Query: 162 HVLLENWNPLGVVGIISAFNFPVA 185
L P+GV +I+ +NFP A
Sbjct: 138 RRALVLKQPIGVAAVITPWNFPSA 161
Score = 79.9 bits (198), Expect = 2e-16
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K+ F EPT++ + + H ETF P+ V FD+ +EAI N GL+
Sbjct: 363 KRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYF 422
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESGS 365
+++D +++ + + G++ VN + ++ FGG K +G GRE GS
Sbjct: 423 YSQDPAQIWRV--AEQLEVGMVGVNEGLISSVE---CPFGGVKQSGLGRE-GS 469
Score = 45.6 bits (109), Expect = 2e-05
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
++ +ELGG IV + A+++ A + + GQ C + + + + D FV+
Sbjct: 254 RVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDA---FVK 310
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 103 bits (259), Expect = 3e-24
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
AN INP E I +V +G +D R I ++R A+ W+ A RG+ VR I
Sbjct: 45 ANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIA 104
Query: 105 DALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGH-- 162
D ++ L +L +L+ GK L E ++ + ++ Y GL+ G ++ S P
Sbjct: 105 DKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFAGLADKDGGEMIDSPIPDTES 164
Query: 163 -VLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
++ E P+GVV I+ +N+P+ W A AL
Sbjct: 165 KIVKE---PVGVVTQITPWNYPLLQASWKIAPAL 195
Score = 81.1 bits (201), Expect = 9e-17
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 25/136 (18%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G F EPT++T + R+V E F P+V V F++ EAI N+ GL+ ++F+KD+
Sbjct: 393 GLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAGAVFSKDIG 452
Query: 321 NLFK----------WLGPQGSDCGLINV-NIPTNGAEIGGAFGGEKYTGGGRESGSDSWK 369
+ W IN + A +GG K +G GRE G + +
Sbjct: 453 KAQRVANKLKLGTVW----------INDFHPYFAQAP----WGGYKQSGIGRELGKEGLE 498
Query: 370 QYCRRSTVTINHGKEI 385
+Y + N ++
Sbjct: 499 EYLVSKHILTNTNPQL 514
Score = 53.7 bits (130), Expect = 5e-08
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG N I+ +DAD LA + AGQ C+ R+ + D+ F +
Sbjct: 278 LELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDK---FEQ 331
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 103 bits (258), Expect = 4e-24
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 51 IIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHK 110
P P+TG + + ++ + ++S++AAY W+ + R ++ + +R +
Sbjct: 37 TEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRER 96
Query: 111 LVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGH--VLLENW 168
+ +L + GK + E ++ +Y GL+ T SG + E
Sbjct: 97 RDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRRE-- 154
Query: 169 NPLGVVGIISAFNFPVAVYGWNAAIAL 195
PLGV I A+N+P + W A AL
Sbjct: 155 -PLGVCAGILAWNYPFMIAAWKCAPAL 180
Score = 79.5 bits (197), Expect = 2e-16
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYF+ P ++ + V E F P++ V PFD+ +E + N GL+S +FT+D++
Sbjct: 379 GYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDIS 438
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ + G +N + + + FGG K +G GRE+G + Y + TV +
Sbjct: 439 RAHRV--AANLEAGTCYINTY-SISPVEVPFGGYKMSGFGRENGQATVDYYSQLKTVIVE 495
Query: 381 HG 382
G
Sbjct: 496 MG 497
Score = 50.6 bits (122), Expect = 4e-07
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG + +++ +D +L A + + A T GQ CT R+F+ ++ + + F+E
Sbjct: 262 LELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQ---FLE 315
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 101 bits (255), Expect = 8e-24
Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
++G +INP+ GE +A VQ+ + +D R ++S+ WAA+ A +R I+R+ D
Sbjct: 19 SSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDI 78
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSILPSERPGH--V 163
LR + L L +L+ GK LAE ++ D+ +Y GL G +P
Sbjct: 79 LRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYT 138
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
E PLGVV I A+N+PV + W +A AL
Sbjct: 139 RRE---PLGVVAGIGAWNYPVQIALWKSAPAL 167
Score = 77.6 bits (192), Expect = 1e-15
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G +V PT+ T + +V E F P++ + +D DEAI N+ + GL++ + T+D+
Sbjct: 366 GAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLA 425
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ + + G+ +N + GG K +G GRE+G + Y R +V +
Sbjct: 426 RAHRAI--HRLEAGICWINTW-GESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVE 482
Query: 381 HG 382
G
Sbjct: 483 LG 484
Score = 49.8 bits (120), Expect = 7e-07
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 199 AVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID 258
A S ++ +ELGG + +I+ DADL+ A V A ++GQ CT R+F+H+ +
Sbjct: 241 ASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQA 300
Query: 259 RPGYFVE 265
R F
Sbjct: 301 R---FEA 304
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 101 bits (255), Expect = 8e-24
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 52 IPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKL 111
S+NP T E AS + I + A Y W R EI+ I +AL+
Sbjct: 6 YQSVNPYTNEAFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHE 65
Query: 112 VPLGQLVSLEMGKILAEGIGEVQEFIDICD-YAVGLSRTYSGSILPSERPGHVLLENWNP 170
L ++++LEMGK+L+E EV+ + IC+ YA + L S+ G+
Sbjct: 66 DELAKMMTLEMGKLLSESKEEVELCVSICNYYADHGPEMLKPTKLNSD-LGNAYYL-KQS 123
Query: 171 LGVVGIISAFNFPVA 185
GV+ +NFP+
Sbjct: 124 TGVIMACEPWNFPLY 138
Score = 80.3 bits (199), Expect = 1e-16
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+ID G F PTI+T + ++ V +E F PI VF + + AI N+ GL SS+
Sbjct: 335 PEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSV 394
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRE 362
D+ K + Q + G+ +N + FGG K +G GRE
Sbjct: 395 IGSDIDRAKK-VSAQ-IETGMTVINGRWITSG-ELPFGGIKKSGYGRE 439
Score = 52.9 bits (128), Expect = 9e-08
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 196 VGVAVQSRFG----KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
G AV G K +ELGGN+A IV +DAD + + L A GQ CT+++R+
Sbjct: 213 GGSAVAEAAGKNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRII 272
Query: 252 LHKKKIDRPGYFVE 265
+ K + D +
Sbjct: 273 VEKSRYDE---VLH 283
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 101 bits (254), Expect = 1e-23
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
A+G I NP+ G I +V +V I++S A + WAA A R I+R+ D
Sbjct: 45 ADGTTIKVTNPADGSVIGTVPSLSVATIKEAIDASAKALSGWAAKTAKERAGILRKWFDL 104
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHV 163
+ + +++ E GK LAE GEV FI+ +A R Y G +P+ + G
Sbjct: 105 IIANADDIALIMTSEQGKPLAEARGEVLYAASFIEW--FAEEAKRVY-GDTIPAPQNGQR 161
Query: 164 LLENWNPLGVVGIISAFNFPVA 185
L P+GV I+ +NFP A
Sbjct: 162 LTVIRQPVGVTAAITPWNFPAA 183
Score = 89.6 bits (223), Expect = 1e-19
Identities = 55/219 (25%), Positives = 85/219 (38%), Gaps = 65/219 (29%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRL---------FLHK-- 254
++ LELGGN IV +DADL+ A + + AGQ C R+ F K
Sbjct: 273 RISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAEKLA 332
Query: 255 ---------------------------KKIDR-------------------PGYFVEPTI 268
K+ G F EP I
Sbjct: 333 AKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGI 392
Query: 269 VTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGP 328
+TG+ + V ETF P+ +F FD+ +E I N+ GL++ +T++ + +
Sbjct: 393 LTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRV--S 450
Query: 329 QGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESGS 365
+ + G++ N + +N FGG K +G GRE GS
Sbjct: 451 EALEYGMVGHNTGLISNEV---APFGGVKQSGLGRE-GS 485
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 101 bits (254), Expect = 1e-23
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
NGE I NP+ G+ + SV + + I+++ A AW AL A R I+R +
Sbjct: 22 NNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNL 81
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHV 163
+ L +L++LE GK LAE GE+ FI+ +A R Y G +P +
Sbjct: 82 MMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEW--FAEEGKRIY-GDTIPGHQADKR 138
Query: 164 LLENWNPLGVVGIISAFNFPVA 185
L+ P+GV I+ +NFP A
Sbjct: 139 LIVIKQPIGVTAAITPWNFPAA 160
Score = 79.9 bits (198), Expect = 1e-16
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K +R G F +PTI+ +P N++V ETF P+ +F F + I N+ + GL++
Sbjct: 358 KAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYF 417
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESGS 365
+ +D++ +F+ + + G++ +N I +N FGG K +G GRE GS
Sbjct: 418 YARDLSRVFRV--GEALEYGIVGINTGIISNEV---APFGGIKASGLGRE-GS 464
Score = 45.2 bits (108), Expect = 2e-05
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
K+ LELGGN IV +DADL+ A + + + AGQ C RL++ DR F E
Sbjct: 250 KVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDR---FAE 306
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 101 bits (254), Expect = 1e-23
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
A G NP+TG IA V +D +E+ ++A P R + + I D
Sbjct: 24 AGGATFDVYNPATGSVIAKVPSMPEEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDG 83
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHV 163
L+ +G+++ +E GK E GEV F D A +S +P +
Sbjct: 84 LKENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDY--CAKHISALD-SHTIPEKPKDCT 140
Query: 164 LLENWNPLGVVGIISAFNFPVA 185
++ P+GV G+I +NFP+
Sbjct: 141 WTVHYRPVGVTGLIVPWNFPIG 162
Score = 77.6 bits (192), Expect = 1e-15
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 260 PGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDV 319
G F PT+V G+ ETF P+V + F + +E I N+ + GL+S +FT D
Sbjct: 366 DGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEVIDAGNDTEFGLASYVFTADA 425
Query: 320 TNLFKWLGPQGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESGS 365
+ G G + N FGG K +G GRE G
Sbjct: 426 ERAQRV--AAGLRFGHVGWNTGTGPTPE---APFGGMKASGIGRE-GG 467
Score = 45.6 bits (109), Expect = 2e-05
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
KL LELGGN IV +DADL A L+ GQ C R+F+H+K D F +
Sbjct: 252 KLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVADA---FGQ 308
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 100 bits (252), Expect = 2e-23
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ +P+TGE++ +V + + R IE+++AA+A W A R I+R+ D
Sbjct: 25 DSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDL 84
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQ---EFIDICDYAVGLSRTYSGSILPSERPGHV 163
+ L +++ E GK LAE GE+ FI+ +A R G LP+
Sbjct: 85 VIANSDDLALILTTEQGKPLAEAKGEIAYAASFIEW--FAEEGKRVA-GDTLPTPDANKR 141
Query: 164 LLENWNPLGVVGIISAFNFPVA 185
++ P+GV I+ +NFP A
Sbjct: 142 IVVVKEPIGVCAAITPWNFPAA 163
Score = 80.3 bits (199), Expect = 1e-16
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
K+ F EPT++TG+ + V ETF P+ +F F S +E + N+ + GL++ +
Sbjct: 361 KRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYL 420
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVN--IPTNGAEIGGAFGGEKYTGGGRESGS 365
+++D+ +++ + + G++ +N + +N FGG K +G GRE GS
Sbjct: 421 YSRDIGRVWRV--AEALEYGMVGINTGLISNEV---APFGGVKQSGLGRE-GS 467
Score = 45.2 bits (108), Expect = 2e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
KL LELGGN IV +DADL+ A + + + GQ C T R F+H++ D F +
Sbjct: 253 KLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDA---FAD 309
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 100 bits (252), Expect = 2e-23
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 7/159 (4%)
Query: 41 DGTSWKANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIV 100
+G GE P NP+TG+ + + + + + + ++ AA+A W R E +
Sbjct: 29 NGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECL 88
Query: 101 RQIGDALRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSILPSER 159
++ D + +L S GK L E+ +D+ + G +R +G
Sbjct: 89 LKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYL 148
Query: 160 PGH---VLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
GH + + PLGVV I+ +N+P+ + W A AL
Sbjct: 149 EGHTSMIRRD---PLGVVASIAPWNYPLMMAAWKLAPAL 184
Score = 95.7 bits (239), Expect = 1e-21
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+K GY+ PT++ G + +V +E F P+V V PFD+ ++ + W N+ + GL+SS+
Sbjct: 372 EKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSV 431
Query: 315 FTKDVTNLFK----------WLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
+TKDV + W +N + +E+ GG+K +G G++
Sbjct: 432 WTKDVGRAHRVSARLQYGCTW----------VNTHFMLV-SEM--PHGGQKLSGYGKDMS 478
Query: 365 SDSWKQYCRRSTVTINH 381
+ Y V + H
Sbjct: 479 LYGLEDYTVVRHVMVKH 495
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 99 bits (250), Expect = 3e-23
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 48 NGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
S+NP+TG+T+A++ N Q+ + + + + W +R + +R IG AL
Sbjct: 5 TATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQAL 64
Query: 108 RHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLEN 167
R + Q ++ EMGK + + EV + +CD+ P+ +
Sbjct: 65 RAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAEHGPAMLNPE-PTLVENQQAVIE 123
Query: 168 WNPLGVVGIISAFNFPVA 185
+ PLGV+ I +NFP+
Sbjct: 124 YRPLGVILAIMPWNFPLW 141
Score = 81.8 bits (203), Expect = 4e-17
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+KI G + T++ + + +E F P+ + A+ N+ + GLS++I
Sbjct: 338 EKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALANDSEFGLSATI 397
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
FT D T + + + +CG + +N + AFGG K +G GRE ++C
Sbjct: 398 FTADDTLAAE-MAAR-LECGGVFINGYSASDA-RVAFGGVKKSGFGRELSHFGLHEFCNV 454
Query: 375 STVTIN 380
TV N
Sbjct: 455 QTVWKN 460
Score = 52.1 bits (126), Expect = 2e-07
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 196 VGVAVQSRFG----KLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
G A+ ++ G K +LELGG++ IV DADL LA + V GQ C +R
Sbjct: 216 AGAAIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFI 275
Query: 252 LHKKKIDRPGYFVE 265
+ + F +
Sbjct: 276 VEEGIAQA---FTD 286
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 100 bits (251), Expect = 3e-23
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYA--AWAALPAPRRGEIVRQIG 104
+ ++I P+TGE + V D + ++RAA+ W + P R ++
Sbjct: 21 STSDVIEVRCPATGEYVGKVPMAAAADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAV 80
Query: 105 DALRHKLVPLGQLVSLEMGKILAE-GIGEVQEFIDICDYAVGLSRTYSGSILPSERPGH- 162
L + +L++ E G+ + +Y G + + + + G
Sbjct: 81 KMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAADKVTWTETRTGSYGQS 140
Query: 163 -VLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
V E P+GVVG I A+N P+ + A AL
Sbjct: 141 IVSRE---PVGVVGAIVAWNVPLFLAVNKIAPAL 171
Score = 71.8 bits (177), Expect = 7e-14
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G+F++PT+ + + + E F P++ + P+D+ ++AI N+ GL+ S++T DV
Sbjct: 366 GFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAGSVWTTDVP 425
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
K + Q G +N + G FGG K +G GRE+G + + + ++ +V +
Sbjct: 426 KGIK-ISQQ-IRTGTYGIN--WYAFDPGSPFGGYKNSGIGRENGPEGVEHFTQQKSVLLP 481
Query: 381 HGKEI 385
G +
Sbjct: 482 MGYTV 486
Score = 53.3 bits (129), Expect = 7e-08
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 196 VGVAVQSRFGKLL----LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
VG V R ++L LELGG +A I+ ED DL A +VF+ AGQ C R+
Sbjct: 236 VGREVGRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRIL 295
Query: 252 LHKKKIDRPGYFVE 265
+ + D V
Sbjct: 296 APRSRYDE---IVA 306
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 99.6 bits (249), Expect = 5e-23
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+G + NP+TGE +V + D +ES++AA WAA RR + +
Sbjct: 39 TSGRVSNIFNPATGEVQGTVALASDADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQL 98
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE 166
L + L +++S E GK + + G++ +++C++ +G+ PG ++
Sbjct: 99 LNDNMNELAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGIPHLQKSEFTEGAGPG---ID 155
Query: 167 NWN---PLGVVGIISAFNFPVAVYGWNAAIALV 196
++ P+G+ I+ FNFP + W A A+
Sbjct: 156 MYSIRQPVGIGAGITPFNFPGMIPMWMFAPAIA 188
Score = 48.0 bits (115), Expect = 3e-06
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD-- 318
G+F+ + + + + E F P++ V + +EA++ + + G +I+T+D
Sbjct: 385 GHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYEEALSLPMKHEYGNGVAIYTRDGD 444
Query: 319 VTNLFKWLGPQGSDCGL--INVNIPTNGAEIGGAFGGEK--YTGGGRESGSDSWKQYCRR 374
F + G+ +NV IP A FGG K G + G+DS K + R
Sbjct: 445 AARDFA----SRINIGMVGVNVPIPVPLAYHS--FGGWKSSSFGDLNQHGTDSIKFWTRT 498
Query: 375 STVT 378
T+T
Sbjct: 499 KTIT 502
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 98.4 bits (246), Expect = 1e-22
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
G SI P+TGE IA + R I S++ A WAA+ RG I+++ D
Sbjct: 27 NTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQKEWAAMSPMARGRILKRAADI 86
Query: 107 LRHKLVPLGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRT-YSGSILPSERP-GHV 163
+R + L L +L+ GK + E + + D ++ G++ + +G +P +
Sbjct: 87 MRERNDALSTLETLDTGKPIQETIVADPTSGADAFEFFGGIAPSALNGDYIPLGGDFAYT 146
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
PLGV I A+N+P + W AA AL
Sbjct: 147 KRV---PLGVCVGIGAWNYPQQIACWKAAPAL 175
Score = 80.3 bits (199), Expect = 1e-16
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G +V+PT+ + + + E F P++ V FD DE + N + GL+ +FT D+
Sbjct: 371 GAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANATEFGLAGGVFTADLA 430
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ G + G + +N N + FGG K +G GRE+ + + + Y TV ++
Sbjct: 431 RAHRV--VDGLEAGTLWINTY-NLCPVEIPFGGSKQSGFGRENSAAALEHYSELKTVYVS 487
Query: 381 HGK 383
GK
Sbjct: 488 TGK 490
Score = 50.6 bits (122), Expect = 5e-07
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
+ELGG + +IV +DAD+ A + ++GQ C+ R+F+ KK R F+E
Sbjct: 257 MELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKAR---FLE 310
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 97.6 bits (244), Expect = 2e-22
Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 6/152 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ + I+PST E A + G+ +D + I +++ A+ W R V +I +
Sbjct: 38 STPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEI 97
Query: 107 LRHKLVPLGQLVSLEMGKILAE-GIGEVQEFIDICDYAVGLSRTYSGSILPSERPGH--V 163
+ + + +S+EMG + + + + +S E +
Sbjct: 98 YEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYKEFSFQEALIEGNEQAIL 157
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ +GVVG+I+ +N+P+ AL
Sbjct: 158 HYD---AIGVVGLITPWNWPMNQVTLKVIPAL 186
Score = 68.7 bits (169), Expect = 8e-13
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GY+V PT+ + + R+ E F P++ + PF++ DEA+T N+ + GL++ I ++D +
Sbjct: 382 GYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQDRS 441
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVT 378
+ G++ VN + G FGG K++G RE G K++ ++
Sbjct: 442 KCRRI--AAQVRSGMVEVN--GHELPGGSYFGGVKFSGRAREGGLWGIKEFLDTKAIS 495
Score = 47.6 bits (114), Expect = 5e-06
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 196 VGVAVQSRFGKLL----LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLF 251
G + L LELGG A I+ DAD++ Q+ V C +GQ C R+
Sbjct: 252 AGKDISKNASNTLKRVCLELGGKGANIIFADADIDALQRG-VRHCFYNSGQSCNAPTRML 310
Query: 252 LHKKKIDRPGYFVE 265
+ + D+ ++
Sbjct: 311 VEQAIYDK---AIK 321
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 97.5 bits (243), Expect = 3e-22
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 17/160 (10%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
P+ P+ + +V+ +R E++ A+ + R +R I D
Sbjct: 43 GTFASAPAHGPAHDFAVGTVE-----LVNRACEAAEEAFWTYGYSSRKERAAFLRAIADE 97
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQE-------FIDICDYAVGLSRTYSGSILPSER 159
+ + + ++ S E G A GE F D + L R + +P +
Sbjct: 98 IEARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADHIEKGDYLDRRV-DAAMPERQ 156
Query: 160 P--GHVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 195
P + P+G V + A NFP+A G + A AL
Sbjct: 157 PAPRQEIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAAL 196
Score = 76.7 bits (189), Expect = 2e-15
Identities = 28/213 (13%), Positives = 49/213 (23%), Gaps = 59/213 (27%)
Query: 209 LELGGNNAIIVNEDADLNLAQQC---LVFACCGTAGQRCTTTRRLFLHKKKI-------- 257
ELG N + + +A A+ + AGQ CT + +
Sbjct: 285 GELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADADRFTTAA 344
Query: 258 ----------------------------------------DRPGYFVEPTI---VTGLPH 274
+ G P +
Sbjct: 345 VEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATESSGRDASPNLFETTGAQFL 404
Query: 275 NSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFT--KDVTNLFKWLGPQGSD 332
+ E F P+ V S E + L+++I D+ +
Sbjct: 405 ADHALGEEVFGPLGLVVRVGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERK 464
Query: 333 CGLINVNIPTNGAEIGGA---FGGEKYTGGGRE 362
G + VN G E+ + G +
Sbjct: 465 AGRVLVNGFPTGVEVVDSMVHGGPYPASTNFGA 497
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 96.9 bits (242), Expect = 4e-22
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+GE PS++P+T E + +G ++ R +++ A+ W+ A R + +I +
Sbjct: 39 ESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAEL 98
Query: 107 LRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLS-RTYSGSILPSERPGH--V 163
+ L + L+ G++L +V + + + P +R
Sbjct: 99 IEKHADELAVMECLDAGQVLRIVRAQVARAAENFAFYAEYAEHAMEDRTFPVDRDWLYYT 158
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
+ P G VGII+ +N P+ + W A AL
Sbjct: 159 VRV---PAGPVGIITPWNAPLMLSTWRIAPAL 187
Score = 83.0 bits (206), Expect = 2e-17
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 235 ACCGTAGQRCTTTRRLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFD 294
A G+R T+ R + G ++ PT+ G H ++ E F P++ PF
Sbjct: 368 ARLLVGGERAKTSFRGEDLSR-----GNYLLPTVFVGENH-MKIAQEEIFGPVLVAIPFK 421
Query: 295 SLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGE 354
+EA+ N+ K GL++ +FT+D+ + + G++ +N N + FGG
Sbjct: 422 DEEEALRKANDTKYGLAAYVFTRDLERAHRL--ALELEAGMVYLNSH-NVRHLPTPFGGV 478
Query: 355 KYTGGGRESGSDSWKQYCRRSTVTINHG 382
K +G RE G+ + Y T+ +
Sbjct: 479 KGSGDRREGGTYALDFYTDLKTIALPLR 506
Score = 51.4 bits (124), Expect = 3e-07
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
ELGG + +V DADL A +VF G+RCT + RL + +K + FV
Sbjct: 270 PELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIFED---FVG 323
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 96.8 bits (242), Expect = 4e-22
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
+ G+F +PT+V G +V RE F P+V V F D+A+ W N+ GL+SS+
Sbjct: 374 RTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSDYGLASSV 433
Query: 315 FTKDVTNLFK----------WLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESG 364
+TKD++ + W IN + E+ GG K +G G++
Sbjct: 434 WTKDISKAMRAASRLQYGCTW----------INTHFMLT-NEM--PHGGIKQSGYGKDMS 480
Query: 365 SDSWKQYCRRSTVTINHG 382
+ + Y + INHG
Sbjct: 481 VYALEDYTAVRHIMINHG 498
Score = 95.3 bits (238), Expect = 1e-21
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 38 GVYDGTSW-KANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRR 96
+ G+ + +NP TG I + + + ++++ A+ W+ R
Sbjct: 27 QLLIGSRFEAGTEAEEHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAER 86
Query: 97 GEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIG-EVQEFIDICDYAVGLSRTYSGSIL 155
+ +I DA+ + L +L GK + E+ ID + G R
Sbjct: 87 SNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAGAVRNLHAPAA 146
Query: 156 PSERPGH---VLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
PGH + + P+G+VG I+ +N+P+ + W A A+
Sbjct: 147 GEYLPGHTSMIRRD---PIGIVGSIAPWNYPLMMMAWKLAPAI 186
Score = 50.2 bits (121), Expect = 6e-07
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG +IV DADL + AGQ CT R++ ++ V
Sbjct: 268 LELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEK---LVA 321
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 96.8 bits (242), Expect = 4e-22
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAA-----WAALPAPRRGEIVR 101
+ IP INP+T I + +D + +++ A WA R +R
Sbjct: 20 VLNKRIPVINPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLR 79
Query: 102 QIGDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGS-ILPSERP 160
I + K L +L S++ GK L E ++ + +Y L+ P P
Sbjct: 80 AIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYADLAEKLDARQKAPVSLP 139
Query: 161 G-----HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
HVL E P+GVVG+I+ +N+P+ + W A AL
Sbjct: 140 MDTFKSHVLRE---PIGVVGLITPWNYPMLMATWKVAPAL 176
Score = 81.0 bits (201), Expect = 8e-17
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD-- 318
G+F+EPTI+T + N ++ E F P++ V F + +EAI N+ GL +++ + D
Sbjct: 372 GFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGAAVISNDLE 431
Query: 319 ----VTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
VT FK G++ VN +GG K +G GRE G Y
Sbjct: 432 RCERVTKAFK--------AGIVWVNCS-QPCFTQAPWGGVKRSGFGRELGEWGLDNYLSV 482
Query: 375 STVTINHGKE 384
VT +E
Sbjct: 483 KQVTQYISEE 492
Score = 54.1 bits (131), Expect = 4e-08
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG + ++V ED DL+ A + +F C T GQ C+ T RL LH+ F+
Sbjct: 259 LELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATE---FLN 312
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 96.9 bits (242), Expect = 5e-22
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 47 ANGEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAA--WAALPAPRRGEIVRQI 103
A+G I ++P GE + + + + D + + ++R A+ A W + R ++ ++
Sbjct: 35 ASGSTIDRVSPGHAGEVVGTWPEASADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKV 94
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHV 163
D + + L + SLE+GK +A+ GE+ D+ YA G +R G + +
Sbjct: 95 ADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQARALEGQTHNNIGDDRL 154
Query: 164 LLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
L P+GVVGII+ +NFP + A+
Sbjct: 155 GLVLREPVGVVGIITPWNFPFIIASERVPWAI 186
Score = 80.3 bits (199), Expect = 1e-16
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
G + PT+ G+ + + E F P++ F + DEA+ N + GLS+S+++ ++
Sbjct: 381 GLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSASVWSTNLE 440
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVTIN 380
+ + G +N GG K +G GRE G + +Y + V +
Sbjct: 441 TALQ--TIRRIRAGRCWINS-VIDGTPELPIGGYKKSGLGRELGRYGFDEYSQFKGVHVT 497
Query: 381 HGKEI 385
G+
Sbjct: 498 LGRPA 502
Score = 50.3 bits (121), Expect = 7e-07
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG IV DADL+ A + + AGQ C + RL + + D +E
Sbjct: 269 LELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDA---LME 322
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 94.9 bits (237), Expect = 2e-21
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDA 106
+ E I INP+T E I V +GN D + +E++ Y + R ++ +I
Sbjct: 20 NSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKE 79
Query: 107 LRHKLVPLGQLVSLEMGKILAE-GIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLL 165
++ + Q ++ E+G L+ Q ++ A Y + V+
Sbjct: 80 YENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEFEERRGD--DLVVK 137
Query: 166 ENWNPLGVVGIISAFNFPVAVYGWNAAIAL 195
E +GV G+I+ +NFP A A
Sbjct: 138 E---AIGVSGLITPWNFPTNQTSLKLAAAF 164
Score = 67.5 bits (166), Expect = 1e-12
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 261 GYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVT 320
GYF PTI + + + E F P++ V ++ LDEAI N+ K GL+ + KD
Sbjct: 361 GYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDEAIQIANDTKYGLAGYVIGKDKE 420
Query: 321 NLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRRSTVT 378
L K + + G + +N G + FGG K +G GRE G +++ ++
Sbjct: 421 TLHKV--ARSIEAGTVEIN--EAGRKPDLPFGGYKQSGLGREWGDYGIEEFLEVKSIA 474
Score = 50.2 bits (121), Expect = 5e-07
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE--- 265
LELGG + IV +D D+ A + GQ CT R+ + K D F+
Sbjct: 247 LELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDA---FLAELK 303
Query: 266 ---PTIVTGLPHN 275
+ G P
Sbjct: 304 EQFSQVRVGNPRE 316
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 94.2 bits (235), Expect = 3e-21
Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 86/297 (28%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY---AAWAALPAPRRGEIVRQI 103
+G+ P NP+T E + V++G+ +D + ++++R A+ + W + A RG ++ ++
Sbjct: 33 VSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKL 92
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERPGH 162
D + + L + ++ GK+ + + ++ I Y G + G +P +
Sbjct: 93 ADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFF 152
Query: 163 VLLEN-----------WN----------------------------PL------------ 171
+ WN PL
Sbjct: 153 TYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEA 212
Query: 172 ----GVVGIISAFNFPVAVYGWNAAIAL--------------VG-----VAVQSRFGKLL 208
GVV I+ + P A G AAI+ VG A +S ++
Sbjct: 213 GFPPGVVNIVPGYG-PTA--G--AAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVS 267
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG + IV DADL+ A + GQ C RLF+ + D FV
Sbjct: 268 LELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDE---FVR 321
Score = 84.9 bits (211), Expect = 4e-18
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
GYF++PT+ + + + R+ E F P+ + F SLD+ I N GLS+ I
Sbjct: 373 GPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGI 432
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
FT D+ G + VN + FGG K +G GRE G + +Y
Sbjct: 433 FTNDIDKAITV--SSALQSGTVWVNC-YSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEV 489
Query: 375 STVTINHGKE 384
TVTI ++
Sbjct: 490 KTVTIKISQK 499
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 93.4 bits (233), Expect = 6e-21
Identities = 68/297 (22%), Positives = 109/297 (36%), Gaps = 86/297 (28%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY---AAWAALPAPRRGEIVRQI 103
+ + P++NPSTGE I V +G+ +D + ++++RAA+ + W + A RG ++ ++
Sbjct: 32 VSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRL 91
Query: 104 GDALRHKLVPLGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERPGH 162
D + L L +L+ GK + ++ + Y G + Y G +P +
Sbjct: 92 ADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFF 151
Query: 163 VLLEN-----------WN----------------------------PL------------ 171
+ WN PL
Sbjct: 152 SYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEA 211
Query: 172 ----GVVGIISAFNFPVAVYGWNAAIAL--------------VG-----VAVQSRFGKLL 208
GVV I+ F P A G AAIA +G A S ++
Sbjct: 212 GFPPGVVNIVPGFG-PTA--G--AAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVT 266
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVE 265
LELGG + I+ DAD++ A + FA GQ R F+ + D FVE
Sbjct: 267 LELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDE---FVE 320
Score = 83.8 bits (208), Expect = 1e-17
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSI 314
GYF++PT+ + + E F P++ + F +++E + N GL++++
Sbjct: 372 GIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAV 431
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYCRR 374
FTKD+ Q G + VN + FGG K +G GRE G + Y
Sbjct: 432 FTKDLDKANYL--SQALQAGTVWVNC-YDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 488
Query: 375 STVTIN 380
TVT+
Sbjct: 489 KTVTVK 494
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 91.3 bits (227), Expect = 2e-20
Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 2/136 (1%)
Query: 62 TIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLE 121
++ ++Q+ IES+ A AA+ + IV+ I DA L ++ E
Sbjct: 2 SLEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEE 61
Query: 122 MGKILAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFN 181
G + + +V + + + + + E ++E PLGVV +
Sbjct: 62 TGFGIWQ--DKVIKNVFASKHVYNYIKDMKTIGMLKEDNEKKVMEVAVPLGVVAGLIPST 119
Query: 182 FPVAVYGWNAAIALVG 197
P + + I++
Sbjct: 120 NPTSTVIYKTLISIKA 135
Score = 76.6 bits (189), Expect = 2e-15
Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 65/245 (26%)
Query: 196 VGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKK 255
+ A S + GN + A++ A + ++ + G C + + + + +
Sbjct: 203 MVKAAYSSGTPAIGVGPGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERV 262
Query: 256 KID--------RPGYFVE-------------------PTIV------------TGLPHNS 276
+ + +F+ P IV +P ++
Sbjct: 263 NKEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADA 322
Query: 277 RV-------------VHRETFAPIVYVFPFDSLDEAITWNNEVKQ----GLSSSIFTKDV 319
RV RE API+ + ++ EA + ++ G + I ++D
Sbjct: 323 RVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDK 382
Query: 320 TNLFKWLGPQGSDCGLINVNIPTN----GAEIGGAFGGEKYTG-GGRESGSD--SWKQYC 372
+ + + VN P GA G G S SD +
Sbjct: 383 EIIRE-FA-LKKPVSRLLVNTPGALGGIGATTNLVPALTLGCGAVGGSSSSDNIGPENLF 440
Query: 373 RRSTV 377
+
Sbjct: 441 NIRRI 445
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 90.0 bits (224), Expect = 6e-20
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 2/132 (1%)
Query: 66 VQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKI 125
+ N+ + I + A +A + +I R A +PL Q E G
Sbjct: 1 MPVTNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMG 60
Query: 126 LAEGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 185
+ E F Y G + E + P+G++ I P +
Sbjct: 61 IVEDKVIKNHFASEFIYNKYKDEQTCGIL--EEDDNLGTMTIAEPVGIICGIVPTTNPTS 118
Query: 186 VYGWNAAIALVG 197
+ + I+L
Sbjct: 119 TAIFKSLISLKT 130
Score = 78.5 bits (194), Expect = 5e-16
Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 59/214 (27%)
Query: 196 VGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKK 255
+ A S + GN ++++E AD+ A ++ + G C + + + + +
Sbjct: 198 MVKAAYSSGKPAIGVGAGNVPVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVIVVDE 257
Query: 256 -----------------------------------------------------KIDRPGY 262
K+
Sbjct: 258 VYDEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEMAGVKVPADTK 317
Query: 263 FVEPTIVTGLPHNSRVVHRETFAPIVYVFPFDSLDEAITW----NNEVKQGLSSSIFTKD 318
+ + + ++ H E +P + +F D+ ++A+ G +S ++T
Sbjct: 318 VLIGEGLGKVSYDDAFAH-EKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQ 376
Query: 319 VTNLFK-WLGPQGSDCGLINVNIPTNGAEIGGAF 351
N + I +NIPT IG +
Sbjct: 377 DVNADRIRYFGDKMKTARILINIPTTHGGIGDLY 410
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 89.9 bits (224), Expect = 8e-20
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 6/155 (3%)
Query: 47 ANGEIIPSINPSTGETIASVQQGNVQDYHRCIESSRAAY--AAWAALPAPRRGEIVRQIG 104
+ +INP+ G I V V D + + +++ A+ W + A RG ++ ++
Sbjct: 49 EGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLA 108
Query: 105 DALRHKLVPLGQLVSLEMGKILAEG-IGEVQEFIDICDYAVGLSRTYSGSILPSERPGHV 163
D + L + +L+ G + V I Y G G+ +P +
Sbjct: 109 DVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPN 168
Query: 164 LLENWN---PLGVVGIISAFNFPVAVYGWNAAIAL 195
P+GV GI+ +N+P+ + W A L
Sbjct: 169 RNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACL 203
Score = 80.7 bits (200), Expect = 9e-17
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 255 KKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIVYVFPF--DSLDEAITWNNEVKQGLSS 312
++ RPG+F +PT+ T + + + E+F PI+ + F +D ++ N + GL+S
Sbjct: 392 NQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLAS 451
Query: 313 SIFTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGGAFGGEKYTGGGRESGSDSWKQYC 372
+FT+D+ G + +N N ++ FGG K +G G++ G + +Y
Sbjct: 452 GVFTRDINKALYV--SDKLQAGTVFINTY-NKTDVAAPFGGFKQSGFGKDLGEAALNEYL 508
Query: 373 RRSTVTINH 381
R TVT +
Sbjct: 509 RIKTVTFEY 517
Score = 49.9 bits (120), Expect = 9e-07
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 199 AVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKID 258
S K+ LELGG + +I+ D DLN A Q + + G+ C RLF+ + +
Sbjct: 277 CALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHN 336
Query: 259 RPGYFVE 265
+ FV+
Sbjct: 337 Q---FVQ 340
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 78.1 bits (193), Expect = 7e-16
Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 9/158 (5%)
Query: 49 GEIIPSINPS-TGETIASVQQGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDAL 107
+I ++P +A + +R I+++ AA W P R ++ + D L
Sbjct: 76 SDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADML 135
Query: 108 ----RHKLVPLGQLVSLEMGKILAE-GIGEVQEFIDICDYAVGLSRTYSGSILPSERPGH 162
R +++ + GK + + I E ID + + G S P
Sbjct: 136 SGPRRAEVLA---KTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPST 192
Query: 163 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALVGVAV 200
G V IS FNF A AL+G V
Sbjct: 193 NHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVV 230
Score = 60.0 bits (146), Expect = 5e-10
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 258 DRPGYFVEPTIVTGLPHNSRVVHRETFAPI--VYVFPFDSLDEAITW-NNEVKQGLSSSI 314
+ GY+VEP I+ ++ E F P+ VYV+P D E + ++ GL+ ++
Sbjct: 423 ESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAV 482
Query: 315 FTKDVTNLFKWLGPQGSDCGLINVNIPTNGAEIGG-AFGGEKYTGGGRESGS 365
F +D + + + G +N + G+ +G FGG + +G + G
Sbjct: 483 FAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGG 534
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 59.5 bits (145), Expect = 7e-10
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 52/162 (32%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTT---------------------- 246
LELGG + V+++ DL++A + + + +GQ C
Sbjct: 225 LELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSL 284
Query: 247 --------------TR--------RL--FLHKKKI------DRPGYFVEPTIVTGLPHNS 276
R R+ + +K+ D ++ PTI+T + S
Sbjct: 285 KEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVAYGGTGDAATRYIAPTILTDVDPQS 344
Query: 277 RVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKD 318
V+ E F P++ + SL+EAI + N+ ++ L+ +F+ +
Sbjct: 345 PVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSN 386
Score = 37.5 bits (88), Expect = 0.006
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 170 PLGVVGIISAFNFPV 184
PLGVV +I +N+P
Sbjct: 120 PLGVVLVIGTWNYPF 134
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 53.9 bits (130), Expect = 4e-08
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 51/161 (31%)
Query: 209 LELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKK------------- 255
LELGG +IV DADL+ L+F +GQ L++H
Sbjct: 235 LELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERV 294
Query: 256 -------------------------------------KIDRPGYFVEPTIVTGLPHNSRV 278
+ D + T+V G+ N +
Sbjct: 295 KTELPEINSTGKLVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPL 354
Query: 279 VHRETFAPIVYVFPFDSLDEAITWNNEVK-QGLSSSIFTKD 318
+ E F PI+ V FDS+ AI N+ + L+ +F KD
Sbjct: 355 MSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKD 395
Score = 38.1 bits (89), Expect = 0.005
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 170 PLGVVGIISAFNFPV 184
P GV II FN+PV
Sbjct: 130 PYGVTYIIGPFNYPV 144
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 68/425 (16%), Positives = 115/425 (27%), Gaps = 164/425 (38%)
Query: 68 QGNVQDYHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILA 127
QGN DY E R Y G++++ + L L+ +L+ K+
Sbjct: 163 QGNTDDY---FEELRDLYQT----YHVLVGDLIKFSAETLSE-LIRT----TLDAEKVFT 210
Query: 128 EGIGEVQEFIDICDYAVGLSRTYSGSILPSERPGHVLLE-----------NWNP------ 170
+G+ + E+++ + + + Y SI S P +++ + P
Sbjct: 211 QGL-NILEWLE--NPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 171 ----LGVV-GIISAFNFPVAVYGW-----NAAIAL-----VGVAVQSRFGKLLLELGG-N 214
G G+++A W + A+ +GV + L
Sbjct: 267 LKGATGHSQGLVTAV-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 215 NAIIVNEDA--------DLNLAQ-QCLVFACCGTAGQRCTTTRRLF--LHKKKIDRPGYF 263
+++ NE +L Q Q V +++ L ++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG----KQVEISL----VNGAKNL 377
Query: 264 VEPTIVTGLPH-------------------NSRVVHRETFAPIVYVF-----PFDS--LD 297
V V+G P SR+ E F PF S L
Sbjct: 378 V----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 298 EAI-------------------------TWNNEVKQGLSSS--------IFTKDVTNLFK 324
A T++ + LS S I V K
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV----K 489
Query: 325 W-------------LGPQGSDCG---LINVNIPTNGAEIGGAFGGEKYTGGGRESGSDS- 367
W GP G G L + N G + G + D
Sbjct: 490 WETTTQFKATHILDFGP-GGASGLGVLTHRNKDGTGVRV--------IVAGTLDINPDDD 540
Query: 368 --WKQ 370
+KQ
Sbjct: 541 YGFKQ 545
Score = 31.2 bits (70), Expect = 0.86
Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 56/150 (37%)
Query: 122 MGKILAEGIGEVQEFIDICDYAVGLSRTYSGSIL------PSE-------RPGHVLLENW 168
MG L + Q+ + D TY SIL P G + EN+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNH--FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 169 NPL-------GVVG---IISAFNFPVAVYGWNA-------------AIALVGVAVQSRFG 205
+ + G + I N Y + + A+ L+ A F
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA---F- 1744
Query: 206 KLLLELGGNNAIIVNEDADLNLAQQCLVFA 235
+ L G ++ DA FA
Sbjct: 1745 EDLKSKG-----LIPADA---------TFA 1760
Score = 29.2 bits (65), Expect = 3.3
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 31/98 (31%)
Query: 248 RRLFLHKKKIDRPGYFVE------PTIVTGLPHNSRVVH---------RETFAPIVYVFP 292
+ ++ + D +F + IV P + +H RE ++ +++
Sbjct: 1643 QDVW---NRADN--HFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 293 FDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQG 330
D + E+ + +S F +G
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFR----------SEKG 1724
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 7e-06
Identities = 52/377 (13%), Positives = 103/377 (27%), Gaps = 135/377 (35%)
Query: 23 YPFLKELGLSGSVNPGVYDGTSWKANGEIIPSINPSTGETIASVQQGNVQ---DYHRCIE 79
Y FL K + PS+ + Q Y+
Sbjct: 91 YKFLMS---------------PIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-- 132
Query: 80 SSRAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLE-M---GK-ILAEGIGEV- 133
R + ++ AL +L P + V ++ + GK +A +V
Sbjct: 133 ----------------RLQPYLKLRQALL-ELRP-AKNVLIDGVLGSGKTWVA---LDVC 171
Query: 134 --QEFIDICDYAV-----GLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAV 186
+ D+ + + + ++ + + NW + N + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD----HSSNIKLRI 227
Query: 187 YGWNAAIALVGVAVQSRFGKLLLELGGNNAIIVNED-ADLNLAQ----QC--LVFACCGT 239
++Q+ +LL N ++V + + C L+
Sbjct: 228 -----------HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL------ 270
Query: 240 AGQRCTTTRRLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRET---FAPIVYVFPFD-- 294
TTR K+ D T ++ H+ + E + P D
Sbjct: 271 ------TTR----FKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 295 -----------SL------DEAITWNN-------EVKQGLSSSI---FTKDVTNLFKWLG 327
S+ D TW+N ++ + SS+ + +F L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 328 --PQGSDCGLINVNIPT 342
P + +IPT
Sbjct: 380 VFPP-------SAHIPT 389
Score = 38.7 bits (89), Expect = 0.004
Identities = 42/341 (12%), Positives = 91/341 (26%), Gaps = 112/341 (32%)
Query: 39 VYDGTSWKA------------NGEIIPSINPSTGETIASV--QQGNVQDYHRCIESSRAA 84
V + +W A ++ ++ +T I+ D ++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE------VKSL 306
Query: 85 YAAWAALPAPRRGEIVRQIGDALRHKLVPLGQLVSLEMGKILAEGIGE-VQEFIDICDY- 142
+ ++ R++ P +S+ I E +++ + D
Sbjct: 307 LLKYLDCRP---QDLPREV-----LTTNPR--RLSI---------IAESIRDGLATWDNW 347
Query: 143 ----AVGLSRTYSGSI--L-PSERPGHVLLENWNPLGVVGIISAF----NFPVAVYG--W 189
L+ S+ L P+E + ++ L V F + P + W
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAE-----YRKMFDRLSV------FPPSAHIPTILLSLIW 396
Query: 190 NAAI-ALVGVAVQSRFGKLLLELGGNNAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTR 248
I + V V V L+E + I L L +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---------------N 441
Query: 249 RLFLHKKKIDRPGYFVEPTIVTGLPHNSRVVHRETFAPIV---YVFPFDS--LDEAITWN 303
LH+ +D Y + + + P Y + L
Sbjct: 442 EYALHRSIVDH--Y-----------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI---- 484
Query: 304 NEVKQGLSSSIFTKDVTNLFKWLGPQGSDCGLINVNIPTNG 344
+ ++F + F++L + + + + N
Sbjct: 485 ---EHPERMTLFRMVFLD-FRFLEQK-----IRHDSTAWNA 516
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.0
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 78 IESSRAAYAAWAALPA 93
+++S YA +A PA
Sbjct: 25 LQASLKLYADDSA-PA 39
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 28.6 bits (64), Expect = 3.9
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 74 YHRCIESSRAAYAAWAALPAPRRGEIVRQIGDALRH 109
+ S+RA AA A R + R AL H
Sbjct: 291 ELTLLRSARA-LAALEGATAVGRDHLKRVATMALSH 325
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 28.4 bits (64), Expect = 4.5
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 293 FDSLDEAITWNN-------EVKQGLSSSIFTKDVTN 321
+DE I +K+GL + TK + +
Sbjct: 178 LTKIDEGIEIIEKSINKLERIKKGLMHKLLTKGIGH 213
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family
transcriptional regulator, structural genom 2, RHA08332,
MCSG; 2.20A {Rhodococcus SP}
Length = 207
Score = 27.8 bits (62), Expect = 5.1
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 82 RAAYAAWAALPAPRRGEIVRQIGDALRHKLVPLGQ 116
+AY W + E++ +L L LG+
Sbjct: 168 MSAYEQWLDDDSLELNELLASGMQSLYDGLSSLGE 202
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
genomics, PSI, protein structure initiative; HET: ANP
3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
d.142.1.6 PDB: 1m0t_A*
Length = 491
Score = 28.2 bits (62), Expect = 5.1
Identities = 13/138 (9%), Positives = 40/138 (28%), Gaps = 8/138 (5%)
Query: 215 NAIIVNEDADLNLAQQCLVFACCGTAGQRCTTTRRLFLHKKKIDRPGYFVEPTIVTGLPH 274
N + D+ L A T +L+ + + + G+
Sbjct: 69 NELYARITQDMAQPDSYLHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFR 128
Query: 275 NSRVVHRETFAPIVYVFPFDSLDEAITWNNEVKQGLSSSIFTKDVTNLFKWLGPQGSDCG 334
+ ++ ++ + F+++ + GLS + + + L +
Sbjct: 129 SDYLIDKKKGTEQIKQVEFNTVSVSF-------AGLSEKV-DRLHSYLNRANKYDPKGPI 180
Query: 335 LINVNIPTNGAEIGGAFG 352
+ N+ + + +
Sbjct: 181 YNDQNMVISDSGYLLSKA 198
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP;
2.9A {Pyrococcus abyssi GE5}
Length = 389
Score = 27.6 bits (61), Expect = 7.1
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 5 VRHLQCLRFRSYSDSVSKYPFLKELGLSGSVNPGVYDGTSWKANGEIIPSINPSTGETIA 64
+ L +R + + ++LGL + W+ + P I
Sbjct: 323 IHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRIT---FKRLYPDATNEIR 379
Query: 65 SVQQGNVQ 72
+ G
Sbjct: 380 ELIGGKAF 387
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 27.5 bits (62), Expect = 8.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 196 VGVAVQSRFGKLLLELGGNNAIIVNE 221
+G + K + + N AII +E
Sbjct: 243 IGFRPNTELLKGKVAMLDNGAIITDE 268
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 27.4 bits (62), Expect = 8.6
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 196 VGVAVQSRFGKLLLELGGNNAIIVNE 221
+ + Q + ++ + I V+
Sbjct: 240 LNLHPQLAYLDKKIQRNLDQTIAVDA 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,273,009
Number of extensions: 390947
Number of successful extensions: 1103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 167
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)