RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3653
(202 letters)
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 128 bits (322), Expect = 7e-38
Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 19/156 (12%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIM- 77
+ + AL++ WH++ C+ C E F + YC+DD+F F KC C I
Sbjct: 19 RFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPP 77
Query: 78 -ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCET 136
+ A + +H CF C CK+ + + + + C+
Sbjct: 78 TQVVRRAQDFVYHLHCFACVVCKRQLATGDEF----------------YLMEDSRLVCKA 121
Query: 137 HYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVC 172
Y + G G + A + H
Sbjct: 122 DYETAKQGGSGGSGGSGGGTPMVAASPERHDGGLQA 157
Score = 101 bits (252), Expect = 2e-27
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 67 PKCGGCNRAIMENYV-SALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSF 125
P C GC++ I++ ++ AL+ WHS C C DC P+
Sbjct: 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPL-------------------AERC 47
Query: 126 FDHEGLPYCETHYHAKRGSLCAGCHK--PITGRCITAMFRKFHPEHFVCAFCLRQLNKGT 183
F YC+ + + G+ CA C P T A +H F C C RQL G
Sbjct: 48 FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGD 107
Query: 184 --FKEQNDKPYCHGCFEKLFG 202
+ ++ + C +E
Sbjct: 108 EFYLMEDSRLVCKADYETAKQ 128
Score = 81.0 bits (200), Expect = 9e-20
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 12 HFSLRCFQKCVTALEKTWHTEHFFCAQCGKQF--GEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ Q A + +H F C C +Q G++ + +D + C+ DY
Sbjct: 72 QLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGS 131
Query: 70 GGCNRAIMENYVSALNTQWHSTCFVCRDCKKP 101
GG + + A + + H +
Sbjct: 132 GGSGGSGGGTPMVAASPERHDGGLQANPVEVQ 163
Score = 54.8 bits (132), Expect = 6e-10
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 142 RGSLCAGCHKPITGRCI-TAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKL 200
+CAGC + I R I A+ R +H + C+ C L + + YC F K
Sbjct: 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCKDDFFKR 63
Query: 201 FG 202
FG
Sbjct: 64 FG 65
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 118 bits (298), Expect = 3e-34
Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 24/169 (14%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENYV-SALNTQWHSTCFV 94
+ + +G ++ G P C GC++ I++ ++ AL+ WHS C
Sbjct: 30 RLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLK 89
Query: 95 CRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPI- 153
C DC P+ F YC+ + + G+ CA C I
Sbjct: 90 CSDCHVPL-------------------AERCFSRGESVYCKDDFFKRFGTKCAACQLGIP 130
Query: 154 -TGRCITAMFRKFHPEHFVCAFCLRQLNKGT--FKEQNDKPYCHGCFEK 199
T A +H F C C RQL G + ++ + C +E
Sbjct: 131 PTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179
Score = 100 bits (251), Expect = 4e-27
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIM- 77
+ + AL++ WH++ C+ C E F + YC+DD+F F KC C I
Sbjct: 73 RFILKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGIPP 131
Query: 78 -ENYVSALNTQWHSTCFVCRDCKKP-VTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCE 135
+ A + +H CF C CK+ TG FY ME + C+
Sbjct: 132 TQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLME-----------------DSRLVCK 174
Query: 136 THYHAKR 142
Y +
Sbjct: 175 ADYETAK 181
Score = 70.3 bits (172), Expect = 2e-15
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Query: 103 TGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPITGRCI-TAM 161
G + + + Q D G +CAGC + I R I A+
Sbjct: 20 FGDEDERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKAL 79
Query: 162 FRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
R +H + C+ C L + + YC F K FG
Sbjct: 80 DRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCKDDFFKRFG 119
Score = 50.3 bits (120), Expect = 3e-08
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 12 HFSLRCFQKCVTALEKTWHTEHFFCAQCGKQF--GEDGFHEKDGKPYCRDDY 61
+ Q A + +H F C C +Q G++ + +D + C+ DY
Sbjct: 126 QLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 109 bits (275), Expect = 2e-31
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENY 80
A + WH +HF C C + + + KP C+ Y A C GC+ AI
Sbjct: 18 YTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV 77
Query: 81 --VSALNTQWHST--CFVCRDCKKPVTGKSFYAMEGKPDCRQ 118
V+ N WH++ CF+C C K + G+ F +EG C
Sbjct: 78 QRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV 119
Score = 102 bits (255), Expect = 2e-28
Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 23/140 (16%)
Query: 67 PKCGGCNRAIMEN-YVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSF 125
P+C GC+ I N Y A N WH F C DC + G+ +
Sbjct: 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVM---------------- 47
Query: 126 FDHEGLPYCETHYHAKRGSLCAGCHKPITGRC--ITAMFRKFHP--EHFVCAFCLRQLNK 181
P C+ Y +C GCH I +T +H E F+C+ C + L
Sbjct: 48 --VNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIG 105
Query: 182 GTFKEQNDKPYCHGCFEKLF 201
F +C +K
Sbjct: 106 QKFMPVEGMVFCSVECKKRM 125
Score = 58.6 bits (142), Expect = 1e-11
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 146 CAGCHKPITGR-CITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
CAGC + I A + +H +HF C C L + NDKP C C+ K
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA 63
Score = 47.8 bits (114), Expect = 1e-07
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 9 FDDHFSLRCF---------QKCVTALEKTWH--TEHFFCAQCGKQFGEDGFHEKDGKPYC 57
+ + ++ C + VT +WH TE F C+ C K F +G +C
Sbjct: 58 YVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 117
Query: 58 RDDYFDLFA 66
+ +
Sbjct: 118 SVECKKRMS 126
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 101 bits (253), Expect = 2e-27
Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 24/166 (14%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDG--FHEKDGKPYCRDDYFDLF--APKCGGCNR 74
+ + A++ WH+ C+ C Q G+ G + K G CR+DY LF + C C +
Sbjct: 18 RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ 77
Query: 75 AI--MENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLP 132
+I E + A +H CF C C+ + G F G
Sbjct: 78 SIPASELVMRAQGNVYHLKCFTCSTCRNRLV-----------------PGDRFHYINGSL 120
Query: 133 YCETHYHAKRGSLCAGCHKPIT-GRCITAMFRKFHPEHFVCAFCLR 177
+CE + G + P F
Sbjct: 121 FCEHDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDE 166
Score = 94.3 bits (234), Expect = 2e-24
Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 22/145 (15%)
Query: 64 LFAPKCGGCNRAIMENYV-SALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
L +C GC I + ++ A+++ WHS C C C+ + G
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD----------------IG 46
Query: 123 GSFFDHEGLPYCETHYHAKRG--SLCAGCHKPITG--RCITAMFRKFHPEHFVCAFCLRQ 178
S + G+ C Y G C+ C + I + A +H + F C+ C +
Sbjct: 47 TSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 106
Query: 179 LNKG-TFKEQNDKPYCHGCFEKLFG 202
L G F N +C
Sbjct: 107 LVPGDRFHYINGSLFCEHDRPTALI 131
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 101 bits (252), Expect = 3e-27
Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 30/186 (16%)
Query: 18 FQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIM 77
F + V ++H F C C K + YC+ Y + PK G
Sbjct: 19 FAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAG 78
Query: 78 ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETH 137
+ ++ G
Sbjct: 79 TLS-----------------------------TDKGESLGIKYEEGQSHRPTNPNASRMA 109
Query: 138 YHAKRGSLCAGCHKPIT-GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGC 196
C C + + + + +H F CA C + L T +++ + YC GC
Sbjct: 110 QKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGC 169
Query: 197 FEKLFG 202
+ K FG
Sbjct: 170 YAKNFG 175
Score = 80.8 bits (199), Expect = 2e-19
Identities = 23/140 (16%), Positives = 35/140 (25%), Gaps = 19/140 (13%)
Query: 11 DHFSLRCFQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCG 70
+ + K G ++ E H R + C
Sbjct: 60 SCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCP 119
Query: 71 GCNRAIMEN-YVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHE 129
C +A+ V WH +CF C C K + + D +
Sbjct: 120 RCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKS------------------LESTTLADKD 161
Query: 130 GLPYCETHYHAKRGSLCAGC 149
G YC+ Y G G
Sbjct: 162 GEIYCKGCYAKNFGPKGFGF 181
Score = 61.2 bits (148), Expect = 5e-12
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAI 76
V K+WH F CA+CGK +KDG+ YC+ Y F PK G +
Sbjct: 130 KVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 97.9 bits (244), Expect = 4e-27
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 123 GSFFDHEGLPYCETHYHA-KRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNK 181
GS D + L H A KR +CA C++ I G + A+ + +HPE F CA C +
Sbjct: 4 GSSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAY 63
Query: 182 GTFKEQNDKPYCHGCFEKLFG 202
F E+ YC C+EK F
Sbjct: 64 IGFVEEKGALYCELCYEKFFA 84
Score = 73.6 bits (181), Expect = 1e-17
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 48 FHEKDGKPYCRDDYFD-LFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKS 106
++D + P C CN+ I ++ AL WH F C CK
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKN------ 59
Query: 107 FYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCA 147
F + +G YCE Y S +
Sbjct: 60 ------------TMAYIGFVEEKGALYCELCYEKFFASGPS 88
Score = 69.4 bits (170), Expect = 3e-16
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ AL K+WH E F CA C GF E+ G YC Y FA
Sbjct: 38 PFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 98.7 bits (246), Expect = 6e-27
Identities = 32/140 (22%), Positives = 44/140 (31%), Gaps = 22/140 (15%)
Query: 67 PKCGGCNRAIMENYV-SALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSF 125
CGGC + I + Y A++ WH C C C + G
Sbjct: 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEV----------------GRRL 46
Query: 126 FDHEGLPYCETHYHAKRG--SLCAGCHKPITG--RCITAMFRKFHPEHFVCAFCLRQLNK 181
+ G C Y G LCA C K I + + +H E F CA C +
Sbjct: 47 YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV 106
Query: 182 G-TFKEQNDKPYCHGCFEKL 200
G + N C +
Sbjct: 107 GDRYLLINSDIVCEQDIYEW 126
Score = 97.5 bits (243), Expect = 2e-26
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDG--FHEKDGKPYCRDDYFDLFAPK--CGGCNR 74
+ + A+++ WH + C CG + GE G + K G+ CR DY LF C C++
Sbjct: 15 RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK 74
Query: 75 AI--MENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLP 132
I E + + +H CF C C+K G +
Sbjct: 75 RIRAYEMTMRVKDKVYHLECFKCAACQKHFC-----------------VGDRYLLINSDI 117
Query: 133 YCETHYH 139
CE +
Sbjct: 118 VCEQDIY 124
Score = 52.4 bits (126), Expect = 2e-09
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 145 LCAGCHKPITGR-CITAMFRKFHPEHFVCAFCLRQLNKG--TFKEQNDKPYCHGCFEKLF 201
C GC + I R + A+ + +H + C C +L + + + C + +LF
Sbjct: 4 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
Query: 202 G 202
G
Sbjct: 64 G 64
Score = 49.0 bits (117), Expect = 4e-08
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGE-DGFHEKDGKPYCRDDYFDL 64
+ + +K +H E F CA C K F D + + C D ++
Sbjct: 80 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW 126
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 97.5 bits (243), Expect = 7e-27
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIM- 77
K V + WH F CA+C + F KD K C +PKC GC +AI+
Sbjct: 19 SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA 78
Query: 78 -ENYVSALNTQWHSTCFVCRDC 98
+ V T WH CF
Sbjct: 79 GDQNVEYKGTVWHKDCFSGPSS 100
Score = 81.3 bits (201), Expect = 1e-20
Identities = 22/115 (19%), Positives = 31/115 (26%), Gaps = 22/115 (19%)
Query: 65 FAPKCGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
+ C C + I V N WH TCF C C P
Sbjct: 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHP------------------LAN 45
Query: 123 GSFFDHEGLPYCETHYHAKRGSLCAGCHKPITG--RCITAMFRKFHPEHFVCAFC 175
+F + C + C GC K I + + +H + F
Sbjct: 46 ETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 57.8 bits (140), Expect = 1e-11
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 140 AKRGSLCAGCHKPITG--RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCF 197
+ S C C KPI + + R +H F CA CL L TF +++K C+ C
Sbjct: 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCT 61
Query: 198 EKLFG 202
+
Sbjct: 62 TREDS 66
Score = 29.7 bits (67), Expect = 0.22
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 19 QKCVTALEKTWHTEHFFCAQCG 40
+ V WH + F G
Sbjct: 80 DQNVEYKGTVWHKDCFSGPSSG 101
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 94.3 bits (235), Expect = 7e-26
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 53 GKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEG 112
D+ +F+PKCGGCNR ++ENY+SA++T WH CFVC DC
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFT------------ 49
Query: 113 KPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCA 147
F GSFF+ +G P+CE HYH +RGS +
Sbjct: 50 ------SFSTGSFFELDGRPFCELHYHHRRGSGPS 78
Score = 84.7 bits (210), Expect = 4e-22
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 130 GLPYCETHYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQND 189
+ A C GC++P+ ++AM +HPE FVC C + G+F E +
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDG 61
Query: 190 KPYCHGCFEKLFG 202
+P+C + G
Sbjct: 62 RPFCELHYHHRRG 74
Score = 68.5 bits (168), Expect = 6e-16
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 9 FDDHFSLRCFQ-------KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDY 61
F FS +C ++A++ WH E F C C F F E DG+P+C Y
Sbjct: 10 FLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
Query: 62 FDLFAPKCG 70
Sbjct: 70 HHRRGSGPS 78
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 82.4 bits (204), Expect = 4e-21
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 132 PYCETHYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKP 191
Y K CA C K +T +T + +H E VC C L F +++ P
Sbjct: 4 GSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDP 63
Query: 192 YCHGCFEKLFG 202
YC CF +LF
Sbjct: 64 YCVACFGELFA 74
Score = 79.3 bits (196), Expect = 4e-20
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 18/95 (18%)
Query: 53 GKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEG 112
Y + FAP+C C++ + + V+ + WH C VC C+
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQT------------ 49
Query: 113 KPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCA 147
P G F + PYC + S +
Sbjct: 50 ------PLAGQQFTSRDEDPYCVACFGELFASGPS 78
Score = 72.7 bits (179), Expect = 2e-17
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 9 FDDHFSLRC-------FQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDY 61
+++ F+ RC Q VT ++ WH E C C F +D PYC +
Sbjct: 10 YENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACF 69
Query: 62 FDLFAPKC 69
+LFA
Sbjct: 70 GELFASGP 77
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 82.0 bits (203), Expect = 4e-21
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 53 GKPYCRDDYFDLFAPKCGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAM 110
+PKC GC +AI+ + V T WH CF C +CK+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQ---------- 51
Query: 111 EGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCA 147
GSFF YC T + K S +
Sbjct: 52 --------VIGTGSFFPKGEDFYCVTCHETKFASGPS 80
Score = 69.7 bits (171), Expect = 3e-16
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 130 GLPYCETHYHAKRGSLCAGCHKPITG--RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQ 187
+ C GC K I + + +H + F C+ C + + G+F +
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK 61
Query: 188 NDKPYCHGCFEKLFG 202
+ YC C E F
Sbjct: 62 GEDFYCVTCHETKFA 76
Score = 62.4 bits (152), Expect = 2e-13
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ V WH + F C+ C + G F K YC + FA
Sbjct: 30 QNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 78.5 bits (194), Expect = 8e-20
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 140 AKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEK 199
+ S C C KPIT +T + +H E FVC C +QL+ F ++D YC CF
Sbjct: 2 SSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61
Query: 200 LFG 202
L+
Sbjct: 62 LYA 64
Score = 69.3 bits (170), Expect = 3e-16
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 18 FQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
VT E+ WH E F C C KQ F +D YC + + DL+A
Sbjct: 16 TTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67
Score = 65.4 bits (160), Expect = 8e-15
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 63 DLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
+ C C + I V+ WH CFVC C+K G
Sbjct: 2 SSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRK------------------QLSG 43
Query: 123 GSFFDHEGLPYCETHYHAKRGSLCA 147
F + YC + S +
Sbjct: 44 QRFTARDDFAYCLNCFCDLYASGPS 68
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 77.5 bits (191), Expect = 3e-19
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 66 APKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSF 125
P C C I+ V A + H CFVC DC + +
Sbjct: 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNL------------------NLKQKGY 66
Query: 126 FDHEGLPYCETHYHAKRGSLCAG 148
F EG YCETH A+ +G
Sbjct: 67 FFVEGELYCETHARARTSGPSSG 89
Score = 71.0 bits (174), Expect = 1e-16
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 122 GGSFFDHEGLPYCETHYH---AKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQ 178
G S P + H A+R LC C I G + A + HPE FVCA C
Sbjct: 1 GSSGSSGVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLN 60
Query: 179 LNKGTFKEQNDKPYCHGCFEKLFG 202
L + + + YC
Sbjct: 61 LKQKGYFFVEGELYCETHARARTS 84
Score = 67.9 bits (166), Expect = 2e-15
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGG 71
V A +K H E F CA C + G+ +G+ YC + G
Sbjct: 38 AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 76.0 bits (187), Expect = 1e-18
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 132 PYCETHYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGT--FKEQND 189
Y K G C GC +TG + A K+HPE F C C + G Q+
Sbjct: 4 GSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHA 63
Query: 190 KPYCHGCFEKLFG 202
YC C ++
Sbjct: 64 TLYCGKCHNEVVS 76
Score = 71.0 bits (174), Expect = 9e-17
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 53 GKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEG 112
DY+ F C GC+ + ++ A ++H CF C CK + Y
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAY---- 57
Query: 113 KPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAG 148
YC ++ +G
Sbjct: 58 ------------ALVQHATLYCGKCHNEVVSGPSSG 81
Score = 52.1 bits (125), Expect = 1e-09
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 9 FDDHFSLRCFQ-------KCVTALEKTWHTEHFFCAQCGKQF--GEDGFHEKDGKPYCRD 59
+ F C + A E +H E F C C G+ + YC
Sbjct: 10 YWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGK 69
Query: 60 DYFDLFAPKCGG 71
+ ++ + G
Sbjct: 70 CHNEVVSGPSSG 81
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 75.0 bits (185), Expect = 1e-18
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 140 AKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEK 199
+ +C C +PI GR + AM +++H EHFVCA C + E+ YC + +
Sbjct: 2 SMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61
Query: 200 LFG 202
LFG
Sbjct: 62 LFG 64
Score = 73.9 bits (182), Expect = 4e-18
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 64 LFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGG 123
+ P CG C R I V+A+ QWH FVC C+K PF G
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEK------------------PFLGH 44
Query: 124 SFFDHEGLPYCETHYHAKRGSL 145
++ +GL YCETHY+ G +
Sbjct: 45 RHYERKGLAYCETHYNQLFGDV 66
Score = 68.5 bits (168), Expect = 4e-16
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAP 67
+ V A+ K WH EHF CA+C K F +E+ G YC Y LF
Sbjct: 18 RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 74.4 bits (183), Expect = 3e-18
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 18/84 (21%)
Query: 65 FAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGS 124
P C C I+ +V + H C+VC DC +
Sbjct: 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGT------------------NLKQKG 55
Query: 125 FFDHEGLPYCETHYHAKRGSLCAG 148
F E YCE H + +G
Sbjct: 56 HFFVEDQIYCEKHARERVSGPSSG 79
Score = 66.7 bits (163), Expect = 3e-15
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 140 AKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEK 199
A++ +C C I G + R HPE +VC C L + D+ YC +
Sbjct: 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARE 71
Query: 200 LFG 202
Sbjct: 72 RVS 74
Score = 65.5 bits (160), Expect = 9e-15
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGG 71
V ++ H E + C CG + G + + YC + + G
Sbjct: 28 VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSSG 79
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 73.6 bits (181), Expect = 7e-18
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 55 PYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKP 114
+ + KC C++ I++ + A+ +H CF C C + + G F
Sbjct: 4 GSSGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFT------ 57
Query: 115 DCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCA 147
D +C +H K S +
Sbjct: 58 -----------VDATSQIHCIEDFHRKFASGPS 79
Score = 69.3 bits (170), Expect = 3e-16
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 132 PYCETHYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQL-NKGTFKEQNDK 190
+ CA C +PI R + AM + +HP F C C R L + +
Sbjct: 4 GSSGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQ 63
Query: 191 PYCHGCFEKLFG 202
+C F + F
Sbjct: 64 IHCIEDFHRKFA 75
Score = 65.9 bits (161), Expect = 7e-15
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFH-EKDGKPYCRDDYFDLFAPKC 69
+ + A+ K +H F C C + F + + +C +D+ FA
Sbjct: 28 RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 72.8 bits (179), Expect = 1e-17
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 142 RGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
S C C + I GR I AM +HPE F C C L F + + C C +
Sbjct: 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63
Query: 202 G 202
Sbjct: 64 A 64
Score = 61.7 bits (150), Expect = 2e-13
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 66 APKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSF 125
+ C C I+ + A+N WH CF C C++ F
Sbjct: 5 SSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQE------------------VLADIGF 46
Query: 126 FDHEGLPYCETHYHAKRGSLCA 147
+ G C ++ ++ S +
Sbjct: 47 VKNAGRHLCRPCHNREKASGPS 68
Score = 60.1 bits (146), Expect = 8e-13
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ + A+ +WH E F C C + + GF + G+ CR + A
Sbjct: 18 RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 71.7 bits (176), Expect = 4e-17
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 145 LCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
+C CH I + + +HP+HF CA C ++L +E + YC C +K+
Sbjct: 17 ICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELT-ADARELKGELYCLPCHDKMG 72
Score = 53.3 bits (128), Expect = 5e-10
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ + +H +HF CA CGK+ D E G+ YC + +
Sbjct: 28 QPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGP 76
Score = 43.2 bits (102), Expect = 2e-06
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 19/81 (23%)
Query: 67 PKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFF 126
C C+ I E + N +H F C +C K +T
Sbjct: 16 YICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELT-------------------ADAR 56
Query: 127 DHEGLPYCETHYHAKRGSLCA 147
+ +G YC + S +
Sbjct: 57 ELKGELYCLPCHDKMGVSGPS 77
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 71.0 bits (174), Expect = 7e-17
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 53 GKPYCRDDYFDLFAPKCGGCNRAIM-----ENYVSALNTQWHSTCFVCRDCKKPVTGKSF 107
D Y + A KC GC I + V+ WH CF C+ C + K F
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 108 YAMEGKPDCRQ 118
+ + C
Sbjct: 62 VFHQEQVYCPD 72
Score = 69.8 bits (171), Expect = 2e-16
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 130 GLPYCETHYHAKRGSLCAGCHKPITG-----RCITAMFRKFHPEHFVCAFCLRQLNKGTF 184
Y CAGC PITG + + +H F C C L F
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 185 KEQNDKPYCHGCFEKL 200
++ YC C +KL
Sbjct: 62 VFHQEQVYCPDCAKKL 77
Score = 51.3 bits (123), Expect = 2e-09
Identities = 11/47 (23%), Positives = 15/47 (31%)
Query: 18 FQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDL 64
V ++WH F C +C F + YC D L
Sbjct: 31 GSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 70.1 bits (172), Expect = 1e-16
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 146 CAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
C C+K IT IT + +H + FVC C ++L F D+ YC C++
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64
Score = 69.3 bits (170), Expect = 3e-16
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 18 FQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGG 71
+T ++ WH + F C C K+ F + + YC D Y + + G
Sbjct: 16 TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69
Score = 68.2 bits (167), Expect = 6e-16
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 63 DLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
+ C CN+AI ++ + WH+ CFVC C K G
Sbjct: 2 SSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSK------------------KLAG 43
Query: 123 GSFFDHEGLPYCETHYHAKRGSLCAG 148
F E YC Y +G
Sbjct: 44 QRFTAVEDQYYCVDCYKNFVSGPSSG 69
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 69.7 bits (171), Expect = 2e-16
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 137 HYHAKRGSLCAGCHKPIT--GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCH 194
++ + C C + + + +H + FVCA C +Q +G F E + YC
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE 64
Query: 195 GCFEKLFG 202
F+ LF
Sbjct: 65 HDFQMLFA 72
Score = 62.4 bits (152), Expect = 1e-13
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFA 66
+K V + + +H + F CAQC +QF E F+E +G+ YC D+ LFA
Sbjct: 25 EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 60.1 bits (146), Expect = 1e-12
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 60 DYFDLFAPKCGGCNRAI--MENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCR 117
+ + C C E V++ +H CFVC C +
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQ----------------- 47
Query: 118 QPFQGGSFFDHEGLPYCETHYHAK 141
F G F++ EG YCE +
Sbjct: 48 -QFPEGLFYEFEGRKYCEHDFQML 70
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 69.7 bits (171), Expect = 2e-16
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 134 CETHYHAKRGSLCAGCHKPI--TGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKP 191
E +A + C C + + + +H + FVCA C +Q +G F E +
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 192 YCHGCFEKLFG 202
YC F+ LF
Sbjct: 62 YCEHDFQMLFA 72
Score = 65.1 bits (159), Expect = 1e-14
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+K V + + +H + F CAQC +QF E F+E +G+ YC D+ LFAP
Sbjct: 25 EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCW 75
Score = 60.1 bits (146), Expect = 9e-13
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 20/87 (22%)
Query: 57 CRDDYFDLFAPKCGGCNRAI--MENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKP 114
L + C C E V++ +H CFVC C +
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQ-------------- 47
Query: 115 DCRQPFQGGSFFDHEGLPYCETHYHAK 141
F G F++ EG YCE +
Sbjct: 48 ----QFPEGLFYEFEGRKYCEHDFQML 70
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 68.7 bits (168), Expect = 7e-16
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 137 HYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGT-FKEQNDKPYCHG 195
Y G+ C C + I G ++A+ + +HP+ FVCA C G + C
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Query: 196 CFEKLFG 202
C +
Sbjct: 69 CSLPVSV 75
Score = 68.3 bits (167), Expect = 9e-16
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 60 DYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKP----D 115
DY L+ +C C++ I VSAL +H CFVC C+ P GK
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Query: 116 CRQPFQGGS 124
C P
Sbjct: 69 CSLPVSVSG 77
Score = 47.9 bits (114), Expect = 4e-08
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 9 FDDHFSLRCFQ-------KCVTALEKTWHTEHFFCAQCGKQFGEDGFH-EKDGKPYCRDD 60
+ + RCF + V+AL KT+H + F CA C F + C+
Sbjct: 10 YQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKC 69
Query: 61 YFDLFA 66
+
Sbjct: 70 SLPVSV 75
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 67.5 bits (165), Expect = 2e-15
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 60 DYFDLFAPKCGGCNRAIME-NYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQ 118
C GC I + AL+ QWH +CF C+ C +TG
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-------------- 54
Query: 119 PFQGGSFFDHEGLPYCETHYHAKRGSLCA 147
+ +G+PYCE+ YHA+ GS +
Sbjct: 55 -----EYISKDGVPYCESDYHAQFGSGPS 78
Score = 59.8 bits (145), Expect = 2e-12
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ AL+K WH F C C + KDG PYC DY F
Sbjct: 30 SLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQFGSGP 77
Score = 57.1 bits (138), Expect = 1e-11
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 138 YHAKRGSLCAGCHKPIT-GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGC 196
+ S CAGC + I G+ + A+ +++H F C C L G + ++ PYC
Sbjct: 10 IKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT-GEYISKDGVPYCESD 68
Query: 197 FEKLFG 202
+ FG
Sbjct: 69 YHAQFG 74
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 65.1 bits (159), Expect = 1e-14
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDD-YFDLFAPKCGGCNRAIMEN 79
VT+L K WH C +CGK G E +GKPYC Y +F PK G A
Sbjct: 15 RVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAESHT 74
Query: 80 Y 80
+
Sbjct: 75 F 75
Score = 56.2 bits (136), Expect = 3e-11
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 146 CAGCHKPI-TGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYC-HGCFEKLFG 202
C C K + +T++ + +H C C + L G E KPYC H C+ +FG
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Score = 48.5 bits (116), Expect = 2e-08
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 67 PKCGGCNRAIMEN-YVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQP 119
PKC C++ + V++L WH C C C K +T EGKP C P
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHP 54
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 63.9 bits (156), Expect = 3e-14
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ + +TWH F C+ C + G F G YC Y + FA
Sbjct: 19 SRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69
Score = 63.5 bits (155), Expect = 5e-14
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 144 SLCAGCHKPIT--GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
S C+ C + + R + + +H F+C+ C + L +F YC C+E F
Sbjct: 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
Query: 202 G 202
Sbjct: 66 A 66
Score = 60.5 bits (147), Expect = 6e-13
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 20/85 (23%)
Query: 65 FAPKCGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
+ C C +M + WH CF+C C++ P
Sbjct: 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQ------------------PLGS 45
Query: 123 GSFFDHEGLPYCETHYHAKRGSLCA 147
SF +G YC Y K S +
Sbjct: 46 RSFVPDKGAHYCVPCYENKFASGPS 70
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 65.0 bits (158), Expect = 5e-14
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDG--FHEKDGKPYCRDDYFDLFAPKCGGCNRAIME 78
+ A++ WH+ C+ C Q G+ G + K G CR+DY LF G + M
Sbjct: 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMG 79
Query: 79 NYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCR---QPFQGGSFFDHE 129
+ V + + G F + + R F + D E
Sbjct: 80 SGG---------DVMVVGEP--TLMGGEFGDEDERLITRLENTQFDAANGIDDE 122
Score = 63.8 bits (155), Expect = 1e-13
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 30/141 (21%)
Query: 64 LFAPKCGGCNRAIMENYV-SALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
L +C GC I + ++ A+++ WHS C C C+ + G
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD----------------IG 46
Query: 123 GSFFDHEGLPYCETHYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKG 182
S + G+ C Y G+ AG G M G
Sbjct: 47 TSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM------------VVGEPTLMG 94
Query: 183 -TFKEQNDKPYCHGCFEKLFG 202
F +++++ +
Sbjct: 95 GEFGDEDERLITRLENTQFDA 115
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 63.2 bits (154), Expect = 5e-14
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKC 69
+ + +WH F C +C + G F KD + +C Y A
Sbjct: 20 RKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69
Score = 61.3 bits (149), Expect = 3e-13
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 140 AKRGSLCAGCHKPIT--GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCF 197
+ S C C K I R + +H F+C C + + +F ++++ +C C+
Sbjct: 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
Query: 198 EKLFG 202
EK
Sbjct: 62 EKQHA 66
Score = 58.9 bits (143), Expect = 2e-12
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 20/85 (23%)
Query: 65 FAPKCGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQG 122
+ C C + IM + + WH TCF+C C++ P
Sbjct: 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQ------------------PIGT 45
Query: 123 GSFFDHEGLPYCETHYHAKRGSLCA 147
SF + +C Y + S +
Sbjct: 46 KSFIPKDNQNFCVPCYEKQHASGPS 70
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 63.3 bits (154), Expect = 7e-14
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 53 GKPYCRDDYFDLFAPKCGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAM 110
Y + FA C C + I + + +H CF C C++ + + F
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 111 EGKPDCRQ 118
+ + C
Sbjct: 62 DSELLCND 69
Score = 62.9 bits (153), Expect = 9e-14
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 132 PYCETHYHAKRGSLCAGCHKPITG--RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQND 189
Y + CA C + I R + R FH F C C R L F Q+
Sbjct: 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDS 63
Query: 190 KPYCHGCFEKLFG 202
+ C+ C+ F
Sbjct: 64 ELLCNDCYCSAFS 76
Score = 59.0 bits (143), Expect = 3e-12
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 9 FDDHFSLRCF---------QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRD 59
+D+ F+ C + + ++ +H F C +C + ++ F +D + C D
Sbjct: 10 YDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCND 69
Query: 60 DYFDLFAPKC 69
Y F+
Sbjct: 70 CYCSAFSSGP 79
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 62.5 bits (152), Expect = 1e-13
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 22 VTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGC 72
V AL++ +H F C+ C Q F+ + + YC Y
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71
Score = 59.4 bits (144), Expect = 2e-12
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 66 APKCGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGG 123
+ CGGC ++ V AL+ +H CFVC C+ + G+ FYA+E +
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERR---------- 54
Query: 124 SFFDHEGLPYCETHYHAKRGSLCAGC 149
YCE Y A S
Sbjct: 55 --------AYCEGCYVATLES-GPSS 71
Score = 59.0 bits (143), Expect = 2e-12
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 146 CAGCHKPITGRC--ITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
C GC + + G + A+ R FH FVC+ C QL F + YC GC+
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 61.7 bits (150), Expect = 3e-13
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 22 VTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGC 72
V +++H F C C K D + YC+ Y + PK G
Sbjct: 23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGY 73
Score = 57.0 bits (138), Expect = 2e-11
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 19/85 (22%)
Query: 66 APKCGGCNRAIMEN-YVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGS 124
KCG C R + V +H CF+C C+K + +
Sbjct: 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS------------------TT 48
Query: 125 FFDHEGLPYCETHYHAKRGSLCAGC 149
H+ YC++ Y K G G
Sbjct: 49 VAIHDAEVYCKSCYGKKYGPKGYGY 73
Score = 56.6 bits (137), Expect = 2e-11
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 143 GSLCAGCHKPI-TGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
G+ C C + + + R FH F+C C + L+ T + + YC C+ K +
Sbjct: 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 66
Query: 202 G 202
G
Sbjct: 67 G 67
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 61.0 bits (148), Expect = 4e-13
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 64 LFAPKCGGCNRAIM----ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCR 117
+ C GC I Y+S QWH+ CF C+ C + G+ F C
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCP 60
Score = 60.2 bits (146), Expect = 9e-13
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 146 CAGCHKPITG----RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
CAGC PI+G + I+ R++H + F C C L F + D C C + +
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67
Query: 202 G 202
G
Sbjct: 68 G 68
Score = 59.5 bits (144), Expect = 2e-12
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCG 70
K ++ E+ WH + F C +C GF + C D D+ P G
Sbjct: 21 TKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG 72
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 60.6 bits (147), Expect = 6e-13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 63 DLFAPKCGGCNRAIME----NYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQ 118
+ C C++ I ++ ++QWHS CF C C + GK F + C++
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
Score = 57.9 bits (140), Expect = 7e-12
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 146 CAGCHKPITG----RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
C C KPI+G + I ++H E F C C L F QN + +C C +
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMD 67
Score = 52.6 bits (126), Expect = 8e-10
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 19 QKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCN 73
K + + WH+E F C +C GF ++ + +C+ + G +
Sbjct: 21 AKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 62.0 bits (150), Expect = 6e-13
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 22 VTALEKTWHTEHFFCAQCGKQFGEDG--FHEKDGKPYCRDDYFDLFAPKCGGCNRAIM-- 77
+ A+++ WH + C CG + GE G + K G+ CR DY L + +
Sbjct: 19 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMV 78
Query: 78 --ENYVSALNTQWHSTCFVCRDCKKPVTGKSFY 108
E + + R +
Sbjct: 79 VGEPTLMGGEFGDEDERLITRLENTQFDAANGI 111
Score = 59.3 bits (143), Expect = 6e-12
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 21/127 (16%)
Query: 67 PKCGGCNRAIMENYV-SALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSF 125
CGGC + I + Y A++ WH C C C + G
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRL----------------GEVGRRL 47
Query: 126 FDHEGLPYCETHYHAKRGSLCAGCHKPITGRC----ITAMFRKFHPEHFVCAFCLRQLNK 181
+ G C Y GS + E + Q +
Sbjct: 48 YYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA 107
Query: 182 GTFKEQN 188
+
Sbjct: 108 ANGIDDE 114
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 59.4 bits (143), Expect = 6e-12
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGF--HEKDGKPYCRDDYFDLFA 66
+ A++ WH+ C+ C Q G+ G + K G CR+DY LF
Sbjct: 76 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 58.2 bits (140), Expect = 1e-11
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 114 PDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPITGR-CITAMFRKFHPEHFVC 172
G G CAGC I R + AM +H C
Sbjct: 32 VTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKC 91
Query: 173 AFCLRQLNKGTFK--EQNDKPYCHGCFEKLFG 202
+ C QL ++ C + +LFG
Sbjct: 92 SSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 57.1 bits (137), Expect = 4e-11
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 17/93 (18%)
Query: 52 DGKPYCRDDYFDLFAPKCGGCNRAIMENYV-SALNTQWHSTCFVCRDCKKPVTGKSFYAM 110
G L +C GC I + ++ A+++ WHS C C C+ +
Sbjct: 47 GGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGT--- 103
Query: 111 EGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRG 143
S + G+ C Y G
Sbjct: 104 -------------SSYTKSGMILCRNDYIRLFG 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 56.3 bits (136), Expect = 3e-11
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 146 CAGCHKPI-TGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYC-HGCFEKLFG 202
C C K + ++++ + +H C C + L G E + KP+C C+ LFG
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 70
Score = 51.2 bits (123), Expect = 2e-09
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFD-LFAPKC 69
V++L K WH C +C K G E DGKP+C + LF
Sbjct: 24 KVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73
Score = 48.5 bits (116), Expect = 2e-08
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 66 APKCGGCNRAIMEN-YVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQP 119
A KC C++ + VS+L WH C C C K +T +GKP C +P
Sbjct: 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKP 63
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 53.9 bits (129), Expect = 6e-10
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 21/105 (20%)
Query: 61 YFDLFAPK--CGGCNRAIM--ENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDC 116
Y LF C C++ I E + + +H CF C C+K +
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFS------------- 47
Query: 117 RQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPITGRCITAM 161
G + CE + +G + +
Sbjct: 48 ----VGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGDVMVV 88
Score = 51.2 bits (122), Expect = 5e-09
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 22 VTALEKTWHTEHFFCAQCGKQFGE-DGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENY 80
+ +K +H E F CA C K F D + + C D ++ G
Sbjct: 25 MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGD 84
Query: 81 VSALNTQWHSTCFVCRDCKKPVT 103
V + + ++ +T
Sbjct: 85 VMVVGEPTLMGGEFGDEDERLIT 107
Score = 47.0 bits (111), Expect = 2e-07
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 144 SLCAGCHKPITG--RCITAMFRKFHPEHFVCAFCLRQLNKG-TFKEQNDKPYCHGCFEKL 200
LCA C K I + + +H E F CA C + + G + N C +
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEW 68
Query: 201 FG 202
Sbjct: 69 TK 70
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 51.8 bits (124), Expect = 2e-09
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 146 CAGCHKPIT-GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
C C K + + A + FH F C++C +L+ GT+ + + YC F +LF
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75
Score = 51.0 bits (122), Expect = 4e-09
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 22 VTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGC 72
+ A ++ +H F C+ C + + G+ YC+ + LF K
Sbjct: 31 LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81
Score = 45.6 bits (108), Expect = 3e-07
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 21/92 (22%)
Query: 66 APKCGGCNRAI--MENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGG 123
C C + + ME + A +H +CF C C ++ G
Sbjct: 15 RETCVECQKTVYPME-RLLANQQVFHISCFRCSYCNNKLS------------------LG 55
Query: 124 SFFDHEGLPYCETHYHAKRGSLCAGCHKPITG 155
++ G YC+ H++ S +G
Sbjct: 56 TYASLHGRIYCKPHFNQLFKSKGNYDEGFGSG 87
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 47.0 bits (111), Expect = 7e-08
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 143 GSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGT-FKEQNDKPYCHGCFEK 199
S C C K ITGR + A + +HP +C C + +G Q + C +
Sbjct: 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62
Score = 40.1 bits (93), Expect = 2e-05
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 65 FAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGK----PDCRQPF 120
+ C C + I + A +H +C +C C + ++G P CRQ
Sbjct: 4 GSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63
Query: 121 QG 122
+
Sbjct: 64 RT 65
Score = 36.2 bits (83), Expect = 6e-04
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 20 KCVTALEKTWHTEHFFCAQCGKQFGE-DGFHEKDGKPYCRD 59
+ + A EK +H C +CG+ F E + + + +
Sbjct: 18 RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 41.0 bits (96), Expect = 9e-06
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 65 FAPKCGGCNRAIM--ENYVSALNTQWHST--CFVCRDCKKPVTGKSFYAMEGKPDC 116
A C GC+ AI V+ N WH++ CF+C C K + G+ F +EG C
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 28.7 bits (64), Expect = 0.24
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 19 QKCVTALEKTWHTEH--FFCAQCGKQFGEDGFHEKDGKPYC 57
+ VT +WH F C+ C K F +G +C
Sbjct: 16 VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 27.5 bits (61), Expect = 0.67
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 146 CAGCHKPI--TGRCITAMFRKFH--PEHFVCAFCLRQLNKGTFKEQNDKPYC 193
C GCH I + +T +H E F+C+ C + L F +C
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 40.3 bits (94), Expect = 3e-05
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 137 HYHAKRGSLCAGCHKPI-TGRCITAMFRKFHPEHFVCAFCLRQLNKGTFK--EQNDKPYC 193
H A G LCA C + + + FH F C C L G ++ + YC
Sbjct: 9 HQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYC 68
Query: 194 HGCFEKLF 201
+
Sbjct: 69 LQHLPQTD 76
Score = 38.8 bits (90), Expect = 8e-05
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 21 CVTALEKTWHTEHFFCAQCGKQFGEDGF--HEKDGKPYCRDDYFDLFAPKCGG 71
+ +H F C C G+ H DG YC + G
Sbjct: 30 RLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSSG 82
Score = 38.8 bits (90), Expect = 9e-05
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 17/74 (22%)
Query: 66 APKCGGCNRAI-MENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGGS 124
C C + + + +H +CF C C+ + +
Sbjct: 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY----------------E 58
Query: 125 FFDHEGLPYCETHY 138
+G YC H
Sbjct: 59 QHPGDGHFYCLQHL 72
>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport,
iron, metal-binding, oxidoreductase, periplasm,
transport; HET: HEC; 1.74A {Escherichia coli} SCOP:
a.138.1.3 PDB: 1gu6_A* 3l1t_A* 3tor_A* 2rf7_A*
Length = 452
Score = 33.3 bits (75), Expect = 0.044
Identities = 29/139 (20%), Positives = 39/139 (28%), Gaps = 16/139 (11%)
Query: 49 HEKDGKPYCRDDYFDLFAPKCGGC-NRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSF 107
E GKP+ + FD + CG C + A+ W D K + +
Sbjct: 163 MEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPW-------DDGMKVENMEQY 215
Query: 108 YAMEGKPDCRQPFQGG--SFFDHEGLPYCETHYHAKRGSLCAGCHKPIT----GRCITAM 161
Y D H H K C CH P G+ T
Sbjct: 216 YDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTDH 275
Query: 162 FRKFHPEHF--VCAFCLRQ 178
++F CA C Q
Sbjct: 276 KIGNPFDNFAQTCANCHTQ 294
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.073
Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 74/179 (41%)
Query: 9 FDDHFS--LRCFQKCVTAL----EKTWHTEHFFCA-------------QCGKQFG----- 44
+ Q VTA+ +W E FF + +C + +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 45 ----EDGFHEKDGKPYCRDDYFDLFAP--KCGGCNRAIMENYVSALNTQWHS-------- 90
ED +G P +P + +++YV+ N+ +
Sbjct: 321 PSILEDSLENNEGVP----------SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 91 ----TCFVCRDCKKPVTG--KSFYAME----------GKPDCRQPF-QGGSFFDHEGLP 132
V V+G +S Y + G R PF + F + LP
Sbjct: 371 VNGAKNLV-------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 29.3 bits (65), Expect = 0.56
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 30 HTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYF 62
+ C CG+ E +GKP C+ DY+
Sbjct: 169 NGAKVRCDVCGEYTYEADAKLLNGKPVCKPDYY 201
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA,
oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Length = 439
Score = 29.4 bits (65), Expect = 0.71
Identities = 24/140 (17%), Positives = 36/140 (25%), Gaps = 17/140 (12%)
Query: 50 EKDGKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYA 109
+ G P+ + D + C C+ +E Y + F + +Y
Sbjct: 149 DAIGTPFSKASKQDKESMVCAQCH---VEYYFEKKEDKKGFVKFPWDMGVTVDQMEVYYD 205
Query: 110 MEGKPDCRQPFQGGSFF--DHEGLPYCETHYHAKRGSLCAGCHKP---------ITGRCI 158
D H + H K C CH P T +
Sbjct: 206 GIEFSDWTHALSKTPMLKAQHPEYETWKMGIHGKNNVSCVDCHMPKVTSPEGKKFTDHKV 265
Query: 159 TAMFRKFHPEHFVCAFCLRQ 178
F +F CA C Q
Sbjct: 266 GNPFDRFEE---TCATCHSQ 282
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 28.2 bits (63), Expect = 1.7
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 12 HFSLRCFQKCVTALE-KTWHTEHFFCAQCGK 41
+ FQ ++ ++ H +C CG
Sbjct: 85 DLDVGLFQLAGRGVQLAEFYRSHKYCGYCGH 115
>3bnj_A Cytochrome C-552; C-type cytochrome, nitrite reductase, sulfite
complex, calcium, electron transport, heme, iron,
metal-binding; HET: HEM; 1.30A {Wolinella succinogenes}
PDB: 3bnh_A* 3bng_A* 1fs9_A* 1fs7_A* 1fs8_A* 2e80_A*
2e81_A* 3bnf_A* 1qdb_A*
Length = 485
Score = 27.9 bits (61), Expect = 2.2
Identities = 25/119 (21%), Positives = 35/119 (29%), Gaps = 26/119 (21%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVC 95
CAQC +F KD K + P G + ME Y +N
Sbjct: 189 CAQCHVEFYFKKTEWKDDKGVDKTAMVVTL-PWSKGISTEQMEAYYDEIN---------F 238
Query: 96 RDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPIT 154
D ++ + H +T H ++G CA CH P T
Sbjct: 239 ADWTHGISKTPMLKAQ----------------HPDWELYKTGIHGQKGVSCADCHMPYT 281
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.5 bits (62), Expect = 3.0
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 9/36 (25%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGG 71
C C F + + P C KCG
Sbjct: 124 CTSCNNSFEVESAPKIPPLPKC---------DKCGS 150
>2j7a_A Cytochrome C nitrite reductase NRFA; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_A*
Length = 500
Score = 27.7 bits (60), Expect = 3.3
Identities = 18/121 (14%), Positives = 24/121 (19%), Gaps = 27/121 (22%)
Query: 36 CAQC--GKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCF 93
C QC F + + FD + Y + Q
Sbjct: 205 CGQCHVEYYFNGPTMGVNKKPVFPWAEGFDP---------ADMYRYYDKHGDLQVKGFEG 255
Query: 94 VCRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPI 153
D P + + H H G CA CH
Sbjct: 256 KFADWTHPASKTPMIKAQ----------------HPEYETWINGTHGAAGVTCADCHMSY 299
Query: 154 T 154
T
Sbjct: 300 T 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.4
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 2 YHIHVLFFDDHFSLRCFQKCVTALEKTWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDY 61
I ++ + L+ + AL ++ +H+ + F D P D Y
Sbjct: 426 ISIPSIYLE----LKVKLENEYALHRSI-VDHYNIPKT--------FDSDDLIPPYLDQY 472
Query: 62 F 62
F
Sbjct: 473 F 473
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 26.9 bits (60), Expect = 4.7
Identities = 9/46 (19%), Positives = 11/46 (23%), Gaps = 2/46 (4%)
Query: 28 TWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCN 73
E CA+C Q+ D G A C
Sbjct: 135 NMFVEE--CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.0 bits (60), Expect = 5.0
Identities = 9/46 (19%), Positives = 11/46 (23%), Gaps = 2/46 (4%)
Query: 28 TWHTEHFFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCN 73
E CA+C Q+ D G A C
Sbjct: 135 NMFVEE--CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 26.5 bits (57), Expect = 8.3
Identities = 18/121 (14%), Positives = 23/121 (19%), Gaps = 25/121 (20%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHS-TCFV 94
CAQC ++ P G N M Y +
Sbjct: 230 CAQCHVEYYFTHKDNGPAA--------KPVFPWDNGFNPEDMYQYYKGHGAKGPDGKPGP 281
Query: 95 CRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPIT 154
D + M H + H G CA CH
Sbjct: 282 FVDWVHAASKVPMIKM----------------QHPEYETFQDGPHGAAGVSCADCHMQYV 325
Query: 155 G 155
Sbjct: 326 R 326
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.144 0.521
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,348,472
Number of extensions: 193584
Number of successful extensions: 1375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 244
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.5 bits)