RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3653
(202 letters)
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 55.1 bits (133), Expect = 1e-11
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 140 AKRGSLCAGCHKPITGRCITAMFRKFHPEHF 170
KR +CA C++ I G + A+ + +HPE F
Sbjct: 15 GKRTPMCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 38.6 bits (90), Expect = 2e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 67 PKCGGCNRAIMENYVSALNTQWHSTCF 93
P C CN+ I ++ AL WH F
Sbjct: 19 PMCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 31.3 bits (71), Expect = 0.007
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 20 KCVTALEKTWHTEHF 34
+ AL K+WH E F
Sbjct: 31 PFLVALGKSWHPEEF 45
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 48.5 bits (116), Expect = 4e-09
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 60 DYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCF 93
D+ +F+PKCGGCNR ++ENY+SA++T WH CF
Sbjct: 2 DFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 45.4 bits (108), Expect = 4e-08
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 137 HYHAKRGSLCAGCHKPITGRCITAMFRKFHPEHF 170
+ A C GC++P+ ++AM +HPE F
Sbjct: 2 DFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 26.1 bits (58), Expect = 0.37
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 9 FDDHFSLRCFQ-------KCVTALEKTWHTEHF 34
F FS +C ++A++ WH E F
Sbjct: 3 FLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 47.4 bits (113), Expect = 7e-09
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 115 DCRQPFQGGSFFDHEGLPYCETHYHAKRG 143
DC F GSFF+ +G P+CE HYH +RG
Sbjct: 4 DCFTSFSTGSFFELDGRPFCELHYHHRRG 32
Score = 27.0 bits (60), Expect = 0.21
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDY 61
C C F F E DG+P+C Y
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFCELHY 27
Score = 24.7 bits (54), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 171 VCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
VC C + G+F E + +P+C + G
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 32
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 47.0 bits (112), Expect = 1e-08
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 34 FFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAP 67
F CAQC +QF E F+E +G+ YC D+ LFAP
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34
Score = 35.8 bits (83), Expect = 1e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 115 DCRQPFQGGSFFDHEGLPYCETHYH 139
C Q F G F++ EG YCE +
Sbjct: 5 QCFQQFPEGLFYEFEGRKYCEHDFQ 29
Score = 32.8 bits (75), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 170 FVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
FVCA C +Q +G F E + YC F+ LF
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 46.7 bits (111), Expect = 1e-08
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 144 SLCAGCHKPITGRCITAMFRKFHPEH 169
+C C +PI GR + AM +++H EH
Sbjct: 6 PICGACRRPIEGRVVNAMGKQWHVEH 31
Score = 34.3 bits (79), Expect = 4e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 64 LFAPKCGGCNRAIMENYVSALNTQWH 89
+ P CG C R I V+A+ QWH
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQWH 28
Score = 29.7 bits (67), Expect = 0.022
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 20 KCVTALEKTWHTEH 33
+ V A+ K WH EH
Sbjct: 18 RVVNAMGKQWHVEH 31
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 37.1 bits (86), Expect = 9e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 171 VCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
+C C + L+ T D+ YC C+ K +G
Sbjct: 1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 32
Score = 27.9 bits (62), Expect = 0.17
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPK 68
C C K + YC+ Y + PK
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 34
Score = 24.0 bits (52), Expect = 3.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 115 DCRQPFQGGSFFDHEGLPYCETHYHAKRG 143
C++ + H YC++ Y K G
Sbjct: 4 VCKKNLDSTTVAVHGDEIYCKSCYGKKYG 32
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 35.5 bits (82), Expect = 3e-04
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGC 72
CA+CGK +KDG+ YC+ Y F PK G
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 38
Score = 34.7 bits (80), Expect = 4e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 172 CAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
CA C + L T +++ + YC GC+ K FG
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFG 32
Score = 27.0 bits (60), Expect = 0.28
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 115 DCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGC 149
C + + + D +G YC+ Y G G
Sbjct: 4 KCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 38
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 33.6 bits (77), Expect = 0.001
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 138 YHAKRGSLCAGCHKPITGRCITAMFRKFHPE 168
Y G+ C C + I G ++A+ + +HP+
Sbjct: 10 YQRLYGTRCFSCDQFIEGEVVSALGKTYHPD 40
Score = 25.5 bits (56), Expect = 0.70
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 60 DYFDLFAPKCGGCNRAIMENYVSALNTQWHSTC 92
DY L+ +C C++ I VSAL +H C
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDC 41
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 32.8 bits (75), Expect = 0.002
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 61 YFDLFAPKCGGCNRAIM--ENYVSALNTQWHSTCF 93
+PKC GC +AI+ + V T WH CF
Sbjct: 3 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 31.3 bits (71), Expect = 0.005
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 116 CRQPFQGGSFFDHEGLPYCETHYHAKRGSL 145
C +PF G ++ +GL YCETHY+ G +
Sbjct: 6 CEKPFLGHRHYERKGLAYCETHYNQLFGDV 35
Score = 27.5 bits (61), Expect = 0.15
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 34 FFCAQCGKQFGEDGFHEKDGKPYCRDDYFDLF 65
F CA+C K F +E+ G YC Y LF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
Score = 23.3 bits (50), Expect = 4.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 170 FVCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
FVCA C + E+ YC + +LFG
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 33
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 34.0 bits (77), Expect = 0.008
Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 4/104 (3%)
Query: 49 HEKDGKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFY 108
E GKP+ + FD + CG C+ + + + ++ +F
Sbjct: 152 MEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQYYDKIAFS 211
Query: 109 AMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKP 152
H H K C CH P
Sbjct: 212 DWTNSLSK----TPMLKAQHPEYETWTAGIHGKNNVTCIDCHMP 251
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 30.1 bits (68), Expect = 0.016
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 61 YFDLFAPKCGGCNRAIMENYVSALNTQWHSTCF 93
Y + FAP+C C++ + + V+ + WH C
Sbjct: 3 YENKFAPRCARCSKTLTQGGVTYRDQPWHRECL 35
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 30.0 bits (68), Expect = 0.020
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPK 68
C+ C + + G+ YC+ + LF K
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34
Score = 29.3 bits (66), Expect = 0.036
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 172 CAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
C++C +L+ GT+ + + YC F +LF
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 32
Score = 23.5 bits (51), Expect = 3.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 115 DCRQPFQGGSFFDHEGLPYCETHY 138
C G++ G YC+ H+
Sbjct: 4 YCNNKLSLGTYASLHGRIYCKPHF 27
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 34
Score = 29.7 bits (67), Expect = 0.024
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 137 HYHAKRGSLCAGCHKPITGRCITAMFRKFHPE 168
Y K G C GC +TG + A K+HPE
Sbjct: 2 DYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPE 33
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 32.4 bits (73), Expect = 0.036
Identities = 20/159 (12%), Positives = 34/159 (21%), Gaps = 31/159 (19%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCN-RAIMENYVSALNTQWHSTCFV 94
CAQC ++ P G N + + Y
Sbjct: 193 CAQCHVEYYFTHKDNGPAA--------KPVFPWDNGFNPEDMYQYYKGHGAKGPDGKPGP 244
Query: 95 CRDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPIT 154
D + H + H G CA CH
Sbjct: 245 FVDWVHAASK----------------VPMIKMQHPEYETFQDGPHGAAGVSCADCHMQYV 288
Query: 155 ---GRCITAMFRKFHPEHFV---CAFCLRQLNKGTFKEQ 187
G+ I++ + + C C +++
Sbjct: 289 REDGKKISSHWMTSPMKDPEMRACRQCHADKTGEYLRQR 327
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 28.6 bits (64), Expect = 0.043
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 171 VCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
VC C L F +++ PYC CF +LF
Sbjct: 1 VCTGCQTPLAGQQFTSRDEDPYCVACFGELF 31
Score = 27.8 bits (62), Expect = 0.091
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFA 66
C C F +D PYC + +LFA
Sbjct: 2 CTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 28.5 bits (64), Expect = 0.047
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFA 66
C C KQ F +D YC + + DL+A
Sbjct: 2 CTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32
Score = 27.7 bits (62), Expect = 0.11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 171 VCAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
VC C +QL+ F ++D YC CF L+
Sbjct: 1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
Score = 23.9 bits (52), Expect = 2.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 94 VCRDCKKPVTGKSFYAMEGKPDCRQPFQ 121
VC C+K ++G+ F A + C F
Sbjct: 1 VCTACRKQLSGQRFTARDDFAYCLNCFC 28
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 28.2 bits (63), Expect = 0.062
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 67 PKCGGCNRAIMENYV-SALNTQWHSTC 92
CGGC + I + Y A++ WH C
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 28.6 bits (64), Expect = 0.071
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 172 CAFCLRQLNKGTFKEQNDKPYCH-GCFEKLFG 202
C C + L G E KPYC+ C+ +FG
Sbjct: 2 CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 33
Score = 25.5 bits (56), Expect = 1.0
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYC-RDDYFDLFAPKCGG 71
C +CGK G E +GKPYC Y +F PK G
Sbjct: 2 CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFG 38
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 27.4 bits (61), Expect = 0.14
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 172 CAFCLRQLNKGTFKEQNDKPYCH-GCFEKLFG 202
C C + L G E + KP+CH C+ LFG
Sbjct: 2 CERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 33
Score = 24.3 bits (53), Expect = 1.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYC 57
C +C K G E DGKP+C
Sbjct: 2 CERCSKTLTPGGHAEHDGKPFC 23
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 27.0 bits (60), Expect = 0.19
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 68 KCGGCNRAIMENYV-SALNTQWHSTC 92
+C GC I + ++ A+++ WHS C
Sbjct: 4 RCAGCGGKIADRFLLYAMDSYWHSRC 29
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 26.8 bits (59), Expect = 0.19
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 69 CGGCNRAIMENYVSALNTQWHSTCF 93
C C I+ + A+N WH CF
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
Score = 23.7 bits (51), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 146 CAGCHKPITGRCITAMFRKFHPEHF 170
C C + I GR I AM +HPE F
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 25.5 bits (56), Expect = 0.63
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 172 CAFCLRQLNKGTFKEQNDKPYCHGCFEKLF 201
CA C + F E+ YC C+EK F
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFF 31
Score = 23.2 bits (50), Expect = 4.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFA 66
CA C GF E+ G YC Y FA
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 25.4 bits (55), Expect = 0.73
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 170 FVCAFCLRQLNKGTFKEQNDKPYCHGCFEK 199
F CA C + L T E+ + YC GC+ K
Sbjct: 1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK 30
Score = 24.6 bits (53), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 34 FFCAQCGKQFGEDGFHEKDGKPYCRDDY 61
F CA+CGK EK+G+ YC+ Y
Sbjct: 1 FRCAKCGKSLESTTLTEKEGEIYCKGCY 28
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.5 bits (56), Expect = 0.75
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 146 CAGCHKPITGRCITAMFRKFHPEHF 170
CA C +PI R + AM + +HP F
Sbjct: 11 CATCSQPILDRILRAMGKAYHPGCF 35
Score = 24.3 bits (53), Expect = 2.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 68 KCGGCNRAIMENYVSALNTQWHSTCF 93
KC C++ I++ + A+ +H CF
Sbjct: 10 KCATCSQPILDRILRAMGKAYHPGCF 35
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 25.2 bits (55), Expect = 0.83
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 69 CGGCNRAIMENYVSALNTQWHSTCF 93
C CN+AI ++ + WH+ CF
Sbjct: 1 CVKCNKAITSGGITYQDQPWHADCF 25
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 25.1 bits (55), Expect = 0.89
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 123 GSFFDHEGLPYCETHYHAKRG 143
G + +G+PYCE+ YHA+ G
Sbjct: 11 GEYISKDGVPYCESDYHAQFG 31
Score = 24.7 bits (54), Expect = 1.3
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLF 65
C C + + KDG PYC DY F
Sbjct: 2 CQTCSVILTGE-YISKDGVPYCESDYHAQF 30
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.2 bits (55), Expect = 0.92
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 69 CGGCNRAIME-NYVSALNTQWHSTCF 93
C GC I + AL+ QWH +CF
Sbjct: 11 CAGCKEEIKHGQSLLALDKQWHVSCF 36
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 24.9 bits (54), Expect = 0.94
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 69 CGGCNRAIMENYVSALNTQWHSTCF 93
C C + I V+ WH CF
Sbjct: 1 CVQCKKPITTGGVTYREQPWHKECF 25
>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP,
CRIP {Japanese quail (Coturnix coturnix japonica), CRP2
[TaxId: 93934]}
Length = 32
Score = 24.5 bits (53), Expect = 1.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 171 VCAFCLRQLNKGTFKEQNDKPYCHGCFEKLFG 202
+C C + L+ T + + YC C+ K +G
Sbjct: 1 LCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 32
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.8 bits (51), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 144 SLCAGCHKPITGRCITAMFRKFHP 167
S C C K ITGR + A + +HP
Sbjct: 6 SGCDSCEKYITGRVLEAGEKHYHP 29
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 26.6 bits (58), Expect = 2.5
Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 26/120 (21%)
Query: 36 CAQCGKQFGEDGFHEKDGKPYCRDDYFDLFAPKCGGCNRAIMENYVSALNTQWHSTCFVC 95
CAQC ++ KD K + P G + ME Y +N
Sbjct: 175 CAQCHVEYYFKKTEWKDDKGVD-KTAMVVTLPWSKGISTEQMEAYYDEIN---------F 224
Query: 96 RDCKKPVTGKSFYAMEGKPDCRQPFQGGSFFDHEGLPYCETHYHAKRGSLCAGCHKPITG 155
D ++ P + + H ++G CA CH P T
Sbjct: 225 ADWTHGIS--------KTPMLKAQHPDWELYKT--------GIHGQKGVSCADCHMPYTQ 268
>d1os6a_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, PpcA [TaxId: 35554]}
Length = 71
Score = 24.5 bits (53), Expect = 3.3
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 139 HAKRGSLCAGCHKPITGRCITAMFRKFHPEHFVCAFCLRQLNKGTFK 185
H K C CH+ G+ H C C ++ KG K
Sbjct: 20 HQKAVPDCKKCHEKGPGKIEGFGKEMAH--GKGCKGCHEEMKKGPTK 64
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 224
Score = 25.6 bits (55), Expect = 4.6
Identities = 18/142 (12%), Positives = 27/142 (19%), Gaps = 10/142 (7%)
Query: 64 LFAPKCGGCNRAIMENYVSALNTQWHSTCFVCRDCKKPVTGKSFYAMEGKPDCRQPFQGG 123
+ P G + + + P+ + + D G
Sbjct: 40 ITGPNMAG-KSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDL---AGGK 95
Query: 124 SFFDHEGLPYCETHYHAKRGSL------CAGCHKPITGRCITAMFRKFHPEHFVCAFCLR 177
S F E A SL G TA+ H F
Sbjct: 96 STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATH 155
Query: 178 QLNKGTFKEQNDKPYCHGCFEK 199
K E+
Sbjct: 156 YFELTALGLPRLKNLHVAAREE 177
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.0 bits (49), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 94 VCRDCKKPVTGKSFYAMEGKPDC 116
VC C K + G+ F A+E + C
Sbjct: 1 VCVTCSKKLAGQRFTAVEDQYYC 23
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine
nucleosidase {Escherichia coli [TaxId: 562]}
Length = 230
Score = 24.9 bits (53), Expect = 6.6
Identities = 6/47 (12%), Positives = 11/47 (23%), Gaps = 1/47 (2%)
Query: 127 DHEGLPYCETHYHAKRGSLCA-GCHKPITGRCITAMFRKFHPEHFVC 172
G + +L G K T + P+ +
Sbjct: 27 SLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIIN 73
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 22.5 bits (48), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 94 VCRDCKKPVTGKSFYAMEGKPDC 116
VC C+ + G+ FYA+E + C
Sbjct: 1 VCSTCRAQLRGQHFYAVERRAYC 23
>d1k4na_ d.32.1.5 (A:) Hypothetical protein YecM (EC4020)
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 24.7 bits (54), Expect = 8.3
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 3 HIHVLFFD-DHFSLRCFQKCVTALEKTWHTEHFFCAQCGK 41
+++ DH SLRC Q A + W QCG+
Sbjct: 36 GLNITPLTADHISLRCHQ---NATAERWRRG---FEQCGE 69
>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
di-tetraheme cytochrome c3 [TaxId: 879]}
Length = 106
Score = 24.0 bits (51), Expect = 9.4
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 127 DHEGLPYCETHYHAKRGSLCAGCHKPITGR 156
D +H++ C GCHK + +
Sbjct: 61 DRSYERGFYKAWHSESEISCRGCHKAMKAK 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.330 0.144 0.521
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,833
Number of extensions: 44521
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 153
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)