BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3654
(140 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242022944|ref|XP_002431897.1| calcium-regulated heat stable protein, putative [Pediculus humanus
corporis]
gi|212517238|gb|EEB19159.1| calcium-regulated heat stable protein, putative [Pediculus humanus
corporis]
Length = 132
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 101/128 (78%), Gaps = 3/128 (2%)
Query: 10 NKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRS 69
NKK +LS + +P EP++ LSLPSPIITRRTRT S S +A +NP+E G +K FCR
Sbjct: 2 NKKASLSDSITTPTEPYIKH---LSLPSPIITRRTRTNSTSAKAFENPIEKGTVKMFCRE 58
Query: 70 KGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP 129
KGHGFIT + +FVHISDIEG YVPLPGDEV+YRLCPIPPKFEK QAVHV I+HLTP
Sbjct: 59 KGHGFITSNRTGEDIFVHISDIEGEYVPLPGDEVEYRLCPIPPKFEKTQAVHVNIIHLTP 118
Query: 130 EVHLQWDS 137
EVH++WDS
Sbjct: 119 EVHVKWDS 126
>gi|389609929|dbj|BAM18576.1| similar to CG9705 [Papilio xuthus]
Length = 129
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 90/110 (81%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
+N+ L LPSPIITRR RT S S RAL NPVE GKIK FCR +GHG++TP+ G +FVHI
Sbjct: 15 TNSHLQLPSPIITRRNRTASTSERALGNPVENGKIKSFCRERGHGYVTPEKGGEDLFVHI 74
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
SDIEG YVPLPGDEV YRLCPIPPKFEKNQAVHV I+HLT + HL+WD P
Sbjct: 75 SDIEGEYVPLPGDEVTYRLCPIPPKFEKNQAVHVRIIHLTHQRHLKWDEP 124
>gi|195328232|ref|XP_002030820.1| GM25657 [Drosophila sechellia]
gi|195590920|ref|XP_002085192.1| GD14664 [Drosophila simulans]
gi|194119763|gb|EDW41806.1| GM25657 [Drosophila sechellia]
gi|194197201|gb|EDX10777.1| GD14664 [Drosophila simulans]
Length = 143
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
+L+ + P LH N+ +L LPSPIITRRTRT S S RAL+NPV TG +K F R+KGHG
Sbjct: 10 LLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FITP++G VF H+SDIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I HLTPEVH
Sbjct: 70 FITPNAGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISHLTPEVHH 129
Query: 134 QWDSP 138
+W+ P
Sbjct: 130 KWEEP 134
>gi|21356601|ref|NP_648920.1| CG9705, isoform A [Drosophila melanogaster]
gi|24665520|ref|NP_730197.1| CG9705, isoform B [Drosophila melanogaster]
gi|442632925|ref|NP_001261972.1| CG9705, isoform C [Drosophila melanogaster]
gi|75027588|sp|Q9VVA0.1|Y9705_DROME RecName: Full=Cold shock domain-containing protein CG9705
gi|7294059|gb|AAF49414.1| CG9705, isoform A [Drosophila melanogaster]
gi|16648430|gb|AAL25480.1| LD47312p [Drosophila melanogaster]
gi|23093318|gb|AAN11740.1| CG9705, isoform B [Drosophila melanogaster]
gi|220956110|gb|ACL90598.1| CG9705-PA [synthetic construct]
gi|440215920|gb|AGB94665.1| CG9705, isoform C [Drosophila melanogaster]
Length = 143
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
+L+ + P LH N+ +L LPSPIITRRTRT S S RAL+NPV TG +K F R+KGHG
Sbjct: 10 LLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FITP++G VF H+SDIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I HLTPEVH
Sbjct: 70 FITPNAGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISHLTPEVHH 129
Query: 134 QWDSP 138
+W+ P
Sbjct: 130 KWEEP 134
>gi|242246995|ref|NP_001156264.1| calcium-regulated heat stable protein 1 [Acyrthosiphon pisum]
gi|239789112|dbj|BAH71202.1| ACYPI008400 [Acyrthosiphon pisum]
Length = 135
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 90/103 (87%)
Query: 36 PSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCY 95
PSPI+TRRTRT+S S AL+NP +GK+K FC+SKGHGFITPD+G+P FVHISDIEG +
Sbjct: 30 PSPIVTRRTRTDSTSALALKNPQISGKVKYFCKSKGHGFITPDNGDPDTFVHISDIEGEF 89
Query: 96 VPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
VPLPGD V YRLCPIPPK EK QAVHVEIV+LTP+VHL+WDSP
Sbjct: 90 VPLPGDTVHYRLCPIPPKLEKCQAVHVEIVNLTPQVHLKWDSP 132
>gi|158294527|ref|XP_315660.4| AGAP005641-PA [Anopheles gambiae str. PEST]
gi|157015604|gb|EAA11357.4| AGAP005641-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 33 LSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
L LPSPIITRRTRT S S+RA++NP+E GK+K F RSKGHGFITP++G +FVHISDIE
Sbjct: 42 LQLPSPIITRRTRTASTSDRAMRNPIEEGKVKSFSRSKGHGFITPNAGGDDIFVHISDIE 101
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDS 137
G YVPLPGDEV YRLC IPPK+EK QA+HV+I HLTPE H +W++
Sbjct: 102 GEYVPLPGDEVSYRLCSIPPKYEKVQAIHVQITHLTPEKHSRWET 146
>gi|357603731|gb|EHJ63898.1| hypothetical protein KGM_10424 [Danaus plexippus]
Length = 127
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 21 SPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSG 80
SP + H H L LPSPIITRR RT S S +ALQNP+E GKIK FCR KGHGF+TP G
Sbjct: 12 SPNKSHTH----LQLPSPIITRRNRTASTSEKALQNPIEYGKIKSFCREKGHGFVTPLKG 67
Query: 81 EPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
+F+HISDIEG YVPLPGDEV YRLCPIPPKFEK QAVHV+IV L E HL+W+ P
Sbjct: 68 GEDLFLHISDIEGEYVPLPGDEVTYRLCPIPPKFEKCQAVHVQIVQLVRERHLKWNEP 125
>gi|125977582|ref|XP_001352824.1| GA21978 [Drosophila pseudoobscura pseudoobscura]
gi|195169856|ref|XP_002025730.1| GL20690 [Drosophila persimilis]
gi|54641575|gb|EAL30325.1| GA21978 [Drosophila pseudoobscura pseudoobscura]
gi|194109223|gb|EDW31266.1| GL20690 [Drosophila persimilis]
Length = 142
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 96/125 (76%), Gaps = 5/125 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
MLS + P H +N +L LPSPIITRRTRT S S RAL+NPV TG +K F RSKGHG
Sbjct: 10 MLSAKPPVFHHHNNSPNASLQLPSPIITRRTRTASTSARALENPVVTGVVKSFSRSKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FI P +G VF H+SDIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I +LTPEVH
Sbjct: 70 FIIPTAGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISNLTPEVHH 129
Query: 134 QWDSP 138
+W+ P
Sbjct: 130 KWEEP 134
>gi|195376475|ref|XP_002047022.1| GJ13199 [Drosophila virilis]
gi|194154180|gb|EDW69364.1| GJ13199 [Drosophila virilis]
Length = 142
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 5/123 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
MLS + P H N+ TL LPSPIITRRTRT S S RA++NPV +G +K F R+KGHG
Sbjct: 10 MLSAKPPVYHQNSHSPNATLQLPSPIITRRTRTASTSARAMENPVVSGVVKSFSRTKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FITP G VF H+SDIEG YVP+PGDEVKYRLC IPPKFEK+QAVHV+I +LTPEVH
Sbjct: 70 FITPHGGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKFEKHQAVHVQISNLTPEVHH 129
Query: 134 QWD 136
+W+
Sbjct: 130 KWE 132
>gi|195495012|ref|XP_002095086.1| GE19874 [Drosophila yakuba]
gi|194181187|gb|EDW94798.1| GE19874 [Drosophila yakuba]
Length = 143
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 90/109 (82%)
Query: 30 NNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
N +L LPSPIITRRTRT S S RAL+NPV TG +K F R+KGHGFITP +G VF H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPVVTGIVKSFSRTKGHGFITPHAGGEDVFCHVS 85
Query: 90 DIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
DIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I +LTPEVH +W+ P
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISNLTPEVHHKWEEP 134
>gi|194872357|ref|XP_001973013.1| GG13577 [Drosophila erecta]
gi|190654796|gb|EDV52039.1| GG13577 [Drosophila erecta]
Length = 143
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 90/109 (82%)
Query: 30 NNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
N +L LPSPIITRRTRT S S RAL+NPV TG +K F R+KGHGFITP +G VF H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPVVTGIVKSFSRTKGHGFITPHAGGEDVFCHVS 85
Query: 90 DIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
DIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I +LTPEVH +W+ P
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISNLTPEVHHKWEEP 134
>gi|195428158|ref|XP_002062141.1| GK16809 [Drosophila willistoni]
gi|194158226|gb|EDW73127.1| GK16809 [Drosophila willistoni]
Length = 143
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 90/109 (82%)
Query: 30 NNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
N +L LPSPIITRRTRT S S RAL+NP+ TG +K F R+KGHGFITP +G VF H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARALENPMVTGVVKSFSRTKGHGFITPQAGGEDVFCHVS 85
Query: 90 DIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
DIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I +LTPEVH +W+ P
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISNLTPEVHHKWEEP 134
>gi|195127535|ref|XP_002008224.1| GI13370 [Drosophila mojavensis]
gi|193919833|gb|EDW18700.1| GI13370 [Drosophila mojavensis]
Length = 142
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 95/125 (76%), Gaps = 5/125 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
MLS + P H N+ TL LPSPIITRRTRT S S RA++NP+ G +K F R+KGHG
Sbjct: 10 MLSAKPPVYHPNSHSPNATLQLPSPIITRRTRTASTSARAMENPMVAGVVKSFSRTKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FITP G VF H+SDIEG YVP+PGDEVKYRLC IPPKFEK+QAVHV+I +LTPEVH
Sbjct: 70 FITPHDGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKFEKHQAVHVQISNLTPEVHH 129
Query: 134 QWDSP 138
+W+ P
Sbjct: 130 KWEEP 134
>gi|157121173|ref|XP_001659860.1| hypothetical protein AaeL_AAEL009235 [Aedes aegypti]
gi|108874689|gb|EAT38914.1| AAEL009235-PA [Aedes aegypti]
Length = 159
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 86/104 (82%)
Query: 33 LSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
L LPSPIITRRTRT S S+RA++NP+E GK+K F RSKGHGFI+P +G +FVHISDIE
Sbjct: 39 LQLPSPIITRRTRTASTSDRAMRNPIEEGKVKSFSRSKGHGFISPTAGGDDIFVHISDIE 98
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWD 136
G YVPLPGDEV YRLC IPPKFEK QA+HV I HLTPE H +W+
Sbjct: 99 GEYVPLPGDEVSYRLCSIPPKFEKVQAIHVHITHLTPEKHSKWE 142
>gi|194750622|ref|XP_001957629.1| GF23931 [Drosophila ananassae]
gi|190624911|gb|EDV40435.1| GF23931 [Drosophila ananassae]
Length = 142
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 90/109 (82%)
Query: 30 NNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
N +L LPSPIITRRTRT S S RA++NP+ TG +K F R+KGHGFITP +G VF H+S
Sbjct: 26 NASLQLPSPIITRRTRTASTSARAMENPMVTGVVKSFSRTKGHGFITPSAGGEDVFCHVS 85
Query: 90 DIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
DIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I +LTPEVH +W+ P
Sbjct: 86 DIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISNLTPEVHHKWEEP 134
>gi|195014627|ref|XP_001984048.1| GH16224 [Drosophila grimshawi]
gi|193897530|gb|EDV96396.1| GH16224 [Drosophila grimshawi]
Length = 142
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 94/123 (76%), Gaps = 5/123 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
MLS + P H N+ +L LPSPIITRRTRT S S RA++NPV +G +K F R+KGHG
Sbjct: 10 MLSTKPPIYHQNSHSPNASLQLPSPIITRRTRTASTSARAMENPVVSGVVKSFSRTKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FITP+ G VF H+SDIEG YVP+ GDEVKYRLC IPPKFEK+QAVHV I +LTPEVH
Sbjct: 70 FITPNGGGEDVFCHVSDIEGEYVPMEGDEVKYRLCAIPPKFEKHQAVHVHISNLTPEVHH 129
Query: 134 QWD 136
+W+
Sbjct: 130 KWE 132
>gi|91094659|ref|XP_972255.1| PREDICTED: similar to CG9705 CG9705-PA [Tribolium castaneum]
gi|270016464|gb|EFA12910.1| hypothetical protein TcasGA2_TC006980 [Tribolium castaneum]
Length = 121
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 19 MLSPQEPHLHSN-NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITP 77
M S +LH NT +PSP+IT+R RT S R L++ G+IK FCR KGHGFITP
Sbjct: 1 MSSGDNKNLHPGPNTHLIPSPLITKRNRTPSTCERILKHQNLYGEIKSFCREKGHGFITP 60
Query: 78 DSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDS 137
+ G +FVHISDIE Y+P+PGD VKY+LCPIPPKFEK+QAVHV IV+L PEVH +W+S
Sbjct: 61 EDGSEDIFVHISDIEDEYIPIPGDRVKYQLCPIPPKFEKHQAVHVHIVNLKPEVHKRWES 120
>gi|170045455|ref|XP_001850324.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167868493|gb|EDS31876.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 120
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 73/88 (82%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLC 108
+S+RA++NP+E GK++ F RSKGHGFI P SG +FVHISD+EG YVPLPGDEV YRLC
Sbjct: 13 VSDRAMRNPIEEGKVRSFSRSKGHGFIEPASGGDDIFVHISDVEGEYVPLPGDEVSYRLC 72
Query: 109 PIPPKFEKNQAVHVEIVHLTPEVHLQWD 136
IPPKFEK QA+HV+I HLTPE H +W+
Sbjct: 73 FIPPKFEKTQAIHVQITHLTPEKHCKWE 100
>gi|321475491|gb|EFX86454.1| hypothetical protein DAPPUDRAFT_7593 [Daphnia pulex]
Length = 114
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S + +P+PIIT+RTRT S+ A++NP+E G IK FCR KGHGFI D GE +FVH+
Sbjct: 5 SGRSSLIPNPIITKRTRTISMLEMAMENPIEHGVIKSFCRVKGHGFIKKDDGED-IFVHV 63
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
SDI+G YVP GD+V +R IPPK EK QAVHV+I + TPEVH +W SP
Sbjct: 64 SDIDGEYVPRVGDQVSFRKLQIPPKMEKFQAVHVQITNFTPEVHQRWTSP 113
>gi|405973684|gb|EKC38381.1| Calcium-regulated heat stable protein 1 [Crassostrea gigas]
Length = 152
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSPI TRRTRT S S RA + P GK++EFCR KGHGFI PD + +FVHISDIEG
Sbjct: 42 IPSPIPTRRTRTFSQSERAKEGPTFKGKVREFCRQKGHGFIIPDHEKNPIFVHISDIEGE 101
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP GDEV Y++ IPPK EK QAVHV+I HL P V H +WDS
Sbjct: 102 YVPKAGDEVTYKVILIPPKMEKRQAVHVKITHLAPGVSHEKWDS 145
>gi|390355011|ref|XP_003728457.1| PREDICTED: calcium-regulated heat stable protein 1-like
[Strongylocentrotus purpuratus]
Length = 137
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 84/127 (66%), Gaps = 4/127 (3%)
Query: 14 ALSSPMLSPQEPHL---HSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSK 70
A SSP SP++ L H+ + +PSP++TRRTRT S+S A + P++ G I EF RSK
Sbjct: 6 ASSSPQGSPEKSSLPKHHAKHHFLIPSPVVTRRTRTTSVSRVASEGPLKKGTIAEFERSK 65
Query: 71 GHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP- 129
GHGFI+ D +F+HISDIEG YVP+ GD V+YR CPIPPK ++ QAV V + L P
Sbjct: 66 GHGFISSDDDGSRIFLHISDIEGEYVPVAGDRVEYRECPIPPKMDQKQAVEVVLTQLEPG 125
Query: 130 EVHLQWD 136
H WD
Sbjct: 126 SKHESWD 132
>gi|426254286|ref|XP_004020810.1| PREDICTED: calcium-regulated heat stable protein 1 [Ovis aries]
Length = 147
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTYSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPMEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|443695379|gb|ELT96305.1| hypothetical protein CAPTEDRAFT_101508 [Capitella teleta]
Length = 142
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 83/133 (62%), Gaps = 6/133 (4%)
Query: 10 NKKPALSSPMLSP-QEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCR 68
N+ S+P SP P H +PSP+ T+RTRT S S RA P + G + FCR
Sbjct: 11 NRTSGGSTPTRSPVGSPISH----FLIPSPVPTKRTRTYSASERAASGPSQKGTVTSFCR 66
Query: 69 SKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLT 128
KGHGFI P SG VFVHISD +G YVP GDEV+Y+ CPIPPK EK AVHV+IVH
Sbjct: 67 EKGHGFIEPSSGGDKVFVHISDFDGDYVPKVGDEVQYKRCPIPPKNEKFSAVHVQIVHPV 126
Query: 129 PEV-HLQWDSPSP 140
V H +WD+ SP
Sbjct: 127 EGVKHERWDNNSP 139
>gi|444731783|gb|ELW72128.1| Calcium-regulated heat stable protein 1 [Tupaia chinensis]
Length = 209
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 101 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 160
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 161 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSG 204
>gi|417408229|gb|JAA50678.1| Putative calcium-regulated heat stable protein 1, partial [Desmodus
rotundus]
Length = 159
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 51 VPSPLPTRRTRTYSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 110
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 111 YVPVEGDEVTYKMCSIPPKHEKLQAVEVVITHLAPGTKHETW 152
>gi|395515141|ref|XP_003761765.1| PREDICTED: calcium-regulated heat stable protein 1 [Sarcophilus
harrisii]
Length = 147
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA + PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 IPSPLPTRRTRTFSATVRAAEGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK+QAV V I HL P H W
Sbjct: 99 YVPMEGDEVTYKMCSIPPKNEKHQAVEVVITHLAPGTKHETW 140
>gi|114051954|ref|NP_001039416.1| calcium-regulated heat stable protein 1 [Bos taurus]
gi|84201642|gb|AAI11638.1| Calcium regulated heat stable protein 1, 24kDa [Bos taurus]
gi|296473437|tpg|DAA15552.1| TPA: calcium regulated heat stable protein 1, 24kDa [Bos taurus]
gi|440898614|gb|ELR50071.1| Calcium-regulated heat stable protein 1 [Bos grunniens mutus]
Length = 147
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPMEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|402907611|ref|XP_003916564.1| PREDICTED: calcium-regulated heat stable protein 1 [Papio anubis]
Length = 173
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 65 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 124
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 125 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 166
>gi|432103046|gb|ELK30386.1| Calcium-regulated heat stable protein 1 [Myotis davidii]
Length = 235
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q P+ G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 127 VPSPLPTRRTRTFSATVRASQGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 186
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 187 YVPVEGDEVTYKMCSIPPKHEKLQAVEVVITHLAPGTKHETWSG 230
>gi|403273523|ref|XP_003928562.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5
[Saimiri boliviensis boliviensis]
Length = 177
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 69 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 128
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 129 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSG 172
>gi|355675147|gb|AER95455.1| calcium regulated heat stable protein 1, 24kDa [Mustela putorius
furo]
Length = 149
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 41 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 100
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 101 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 142
>gi|431906550|gb|ELK10671.1| Calcium-regulated heat stable protein 1 [Pteropus alecto]
Length = 175
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 67 VPSPLPTRRTRTFSATVRASQGPVYRGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 126
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 127 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 168
>gi|345802321|ref|XP_852743.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Canis
lupus familiaris]
gi|345802323|ref|XP_003434906.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1 [Canis
lupus familiaris]
Length = 147
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|410985238|ref|XP_003998930.1| PREDICTED: calcium-regulated heat stable protein 1 [Felis catus]
Length = 147
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|149725937|ref|XP_001492855.1| PREDICTED: calcium-regulated heat stable protein 1-like [Equus
caballus]
Length = 147
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|301768643|ref|XP_002919738.1| PREDICTED: calcium-regulated heat stable protein 1-like [Ailuropoda
melanoleuca]
gi|281342656|gb|EFB18240.1| hypothetical protein PANDA_008393 [Ailuropoda melanoleuca]
Length = 147
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|126334673|ref|XP_001367062.1| PREDICTED: calcium-regulated heat stable protein 1-like
[Monodelphis domestica]
Length = 147
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA + P+ G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 IPSPLPTRRTRTFSATVRASEGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK+QAV V I HL P H W
Sbjct: 99 YVPMEGDEVTYKMCSIPPKNEKHQAVEVVITHLAPGTKHETW 140
>gi|354467938|ref|XP_003496424.1| PREDICTED: calcium-regulated heat stable protein 1-like [Cricetulus
griseus]
gi|344240794|gb|EGV96897.1| Calcium-regulated heat stable protein 1 [Cricetulus griseus]
Length = 148
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 40 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 100 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 141
>gi|109715854|ref|NP_001035941.1| calcium-regulated heat stable protein 1 [Homo sapiens]
gi|109715858|ref|NP_055131.2| calcium-regulated heat stable protein 1 [Homo sapiens]
gi|114660918|ref|XP_001138007.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7 [Pan
troglodytes]
gi|114660922|ref|XP_001137655.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Pan
troglodytes]
gi|114660924|ref|XP_001137742.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Pan
troglodytes]
gi|114660926|ref|XP_523291.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 9 [Pan
troglodytes]
gi|114660928|ref|XP_001137575.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Pan
troglodytes]
gi|114660930|ref|XP_001138086.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8 [Pan
troglodytes]
gi|332845244|ref|XP_003315008.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|332845246|ref|XP_003315009.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|332845248|ref|XP_003315010.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|332845251|ref|XP_003315011.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|397473713|ref|XP_003808346.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473715|ref|XP_003808347.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473717|ref|XP_003808348.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473719|ref|XP_003808349.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473721|ref|XP_003808350.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473723|ref|XP_003808351.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473725|ref|XP_003808352.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|397473727|ref|XP_003808353.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan paniscus]
gi|41016932|sp|Q9Y2V2.2|CHSP1_HUMAN RecName: Full=Calcium-regulated heat stable protein 1; AltName:
Full=Calcium-regulated heat-stable protein of 24 kDa;
Short=CRHSP-24
gi|315364426|pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24
gi|315364427|pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24
gi|315364428|pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24
gi|315364429|pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24
gi|13097198|gb|AAH03366.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
gi|82568913|gb|AAI08284.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
gi|119605602|gb|EAW85196.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|119605603|gb|EAW85197.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|119605604|gb|EAW85198.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|119605605|gb|EAW85199.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|189053098|dbj|BAG34720.1| unnamed protein product [Homo sapiens]
gi|190689713|gb|ACE86631.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
construct]
gi|190691077|gb|ACE87313.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
construct]
gi|307686115|dbj|BAJ20988.1| calcium regulated heat stable protein 1, 24kDa [synthetic
construct]
gi|410216976|gb|JAA05707.1| calcium regulated heat stable protein 1, 24kDa [Pan troglodytes]
gi|410249286|gb|JAA12610.1| calcium regulated heat stable protein 1, 24kDa [Pan troglodytes]
gi|410291442|gb|JAA24321.1| calcium regulated heat stable protein 1, 24kDa [Pan troglodytes]
gi|410355739|gb|JAA44473.1| calcium regulated heat stable protein 1, 24kDa [Pan troglodytes]
Length = 147
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|386782251|ref|NP_001247992.1| calcium-regulated heat stable protein 1 [Macaca mulatta]
gi|402907609|ref|XP_003916563.1| PREDICTED: calcium-regulated heat stable protein 1 [Papio anubis]
gi|402907613|ref|XP_003916565.1| PREDICTED: calcium-regulated heat stable protein 1 [Papio anubis]
gi|403273515|ref|XP_003928558.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403273517|ref|XP_003928559.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
[Saimiri boliviensis boliviensis]
gi|403273519|ref|XP_003928560.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
[Saimiri boliviensis boliviensis]
gi|403273521|ref|XP_003928561.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4
[Saimiri boliviensis boliviensis]
gi|355709952|gb|EHH31416.1| Calcium-regulated heat-stable protein of 24 kDa [Macaca mulatta]
gi|355756548|gb|EHH60156.1| Calcium-regulated heat-stable protein of 24 kDa [Macaca
fascicularis]
gi|380808268|gb|AFE76009.1| calcium-regulated heat stable protein 1 [Macaca mulatta]
gi|383410311|gb|AFH28369.1| calcium-regulated heat stable protein 1 [Macaca mulatta]
gi|384941918|gb|AFI34564.1| calcium-regulated heat stable protein 1 [Macaca mulatta]
Length = 147
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|296219544|ref|XP_002755926.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
jacchus]
Length = 147
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|22758142|ref|NP_690003.1| calcium-regulated heat stable protein 1 [Rattus norvegicus]
gi|41016763|sp|Q9WU49.1|CHSP1_RAT RecName: Full=Calcium-regulated heat stable protein 1; AltName:
Full=Calcium-regulated heat-stable protein of 24 kDa;
Short=CRHSP-24
gi|4583309|gb|AAD25022.1|AF115346_1 calcium-regulated heat stable protein CRHSP-24 [Rattus sp.]
gi|49522734|gb|AAH71173.1| Calcium regulated heat stable protein 1 [Rattus norvegicus]
gi|149042602|gb|EDL96239.1| calcium regulated heat stable protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 147
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|74213976|dbj|BAE29409.1| unnamed protein product [Mus musculus]
Length = 148
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 40 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 100 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 141
>gi|351709269|gb|EHB12188.1| Calcium-regulated heat stable protein 1 [Heterocephalus glaber]
Length = 149
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 41 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 100
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 101 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 142
>gi|118098085|ref|XP_414938.2| PREDICTED: calcium-regulated heat stable protein 1 [Gallus gallus]
Length = 152
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 82/128 (64%), Gaps = 10/128 (7%)
Query: 9 ENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCR 68
EN++ SP SP +L +PSP+ TRRTRT S + RA + P+ G K FCR
Sbjct: 27 ENRRTRDRSP--SPMRGYL-------IPSPLPTRRTRTYSATVRASEGPIYKGVCKCFCR 77
Query: 69 SKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLT 128
SKGHGFI+P G P +FVHISDIEG YVP+ GDEV Y++C IPPK EK QAV V I HL
Sbjct: 78 SKGHGFISPADGGPDIFVHISDIEGEYVPVSGDEVTYKVCTIPPKNEKLQAVEVVITHLA 137
Query: 129 PEV-HLQW 135
P H W
Sbjct: 138 PGTKHETW 145
>gi|13385290|ref|NP_080097.1| calcium-regulated heat stable protein 1 [Mus musculus]
gi|41016923|sp|Q9CR86.1|CHSP1_MOUSE RecName: Full=Calcium-regulated heat stable protein 1; AltName:
Full=Calcium-regulated heat-stable protein of 24 kDa;
Short=CRHSP-24
gi|15778558|gb|AAL07470.1|AF414101_1 calcineurin substrate CRHSP-24 [Mus musculus]
gi|12833143|dbj|BAB22408.1| unnamed protein product [Mus musculus]
gi|12834885|dbj|BAB23077.1| unnamed protein product [Mus musculus]
gi|12836086|dbj|BAB23495.1| unnamed protein product [Mus musculus]
gi|15029979|gb|AAH11225.1| Calcium regulated heat stable protein 1 [Mus musculus]
gi|56541222|gb|AAH86754.1| Calcium regulated heat stable protein 1 [Mus musculus]
gi|74140430|dbj|BAE42365.1| unnamed protein product [Mus musculus]
gi|74150621|dbj|BAE25463.1| unnamed protein product [Mus musculus]
gi|74196650|dbj|BAE34427.1| unnamed protein product [Mus musculus]
gi|74199323|dbj|BAE33186.1| unnamed protein product [Mus musculus]
gi|74208059|dbj|BAE29139.1| unnamed protein product [Mus musculus]
gi|74213308|dbj|BAE41777.1| unnamed protein product [Mus musculus]
gi|74214291|dbj|BAE40388.1| unnamed protein product [Mus musculus]
gi|74222561|dbj|BAE38151.1| unnamed protein product [Mus musculus]
gi|148664880|gb|EDK97296.1| mCG123718 [Mus musculus]
gi|148703087|gb|EDL35034.1| mCG1049436 [Mus musculus]
Length = 148
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 40 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 100 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 141
>gi|332240252|ref|XP_003269303.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
[Nomascus leucogenys]
gi|332240254|ref|XP_003269304.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
[Nomascus leucogenys]
gi|332240256|ref|XP_003269305.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
[Nomascus leucogenys]
gi|332240262|ref|XP_003269308.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 6
[Nomascus leucogenys]
gi|332240264|ref|XP_003269309.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7
[Nomascus leucogenys]
gi|332240266|ref|XP_003269310.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8
[Nomascus leucogenys]
gi|441659008|ref|XP_004091315.1| PREDICTED: calcium-regulated heat stable protein 1 [Nomascus
leucogenys]
gi|441659013|ref|XP_004091316.1| PREDICTED: calcium-regulated heat stable protein 1 [Nomascus
leucogenys]
Length = 147
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|348584066|ref|XP_003477793.1| PREDICTED: calcium-regulated heat stable protein 1-like [Cavia
porcellus]
Length = 149
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 41 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 100
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 101 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 142
>gi|224070003|ref|XP_002194726.1| PREDICTED: calcium-regulated heat stable protein 1 [Taeniopygia
guttata]
Length = 152
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA + P+ G K FCRSKGHGFITP G P +FVHISDIEG
Sbjct: 44 IPSPLPTRRTRTFSATVRASEGPIYKGVCKCFCRSKGHGFITPADGGPDIFVHISDIEGE 103
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 104 YVPVAGDEVTYKMCTIPPKNEKLQAVEVVITHLAPGTKHETWSG 147
>gi|350581733|ref|XP_003124656.3| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
[Sus scrofa]
gi|350581735|ref|XP_003481097.1| PREDICTED: calcium-regulated heat stable protein 1-like [Sus
scrofa]
gi|350581739|ref|XP_003481099.1| PREDICTED: calcium-regulated heat stable protein 1-like [Sus
scrofa]
Length = 146
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q P+ G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 38 VPSPLPTRRTRTFSATVRASQGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 97
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 98 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 139
>gi|291235125|ref|XP_002737496.1| PREDICTED: calcium-regulated heat-stable protein (24kD)-like
[Saccoglossus kowalevskii]
Length = 130
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFIT-PDSGEPAVFVH 87
S LPSPI+TRRTRT S S A QNPV+ G +K FCR KGHGFIT + +FVH
Sbjct: 16 SGREFLLPSPIVTRRTRTFSTSKSASQNPVKKGTVKYFCRHKGHGFITQAEENAEELFVH 75
Query: 88 ISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDSPS 139
ISDIEG Y+P+ GD+V Y+ C IPPK K QAV V I HL P+V H +W+ P
Sbjct: 76 ISDIEGEYIPVVGDQVTYKECLIPPKKTKTQAVEVIITHLAPDVKHHRWEDPD 128
>gi|350581737|ref|XP_003481098.1| PREDICTED: calcium-regulated heat stable protein 1-like [Sus
scrofa]
Length = 183
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q P+ G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 75 VPSPLPTRRTRTFSATVRASQGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 134
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 135 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 176
>gi|449275957|gb|EMC84682.1| Calcium-regulated heat stable protein 1 [Columba livia]
Length = 152
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 81/128 (63%), Gaps = 10/128 (7%)
Query: 9 ENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCR 68
EN++ SP SP +L +PSP+ TRRTRT S + RA + P+ G K FCR
Sbjct: 27 ENRRARDRSP--SPMRGYL-------IPSPLPTRRTRTFSATVRASEGPIYKGVCKCFCR 77
Query: 69 SKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLT 128
SKGHGFITP G +FVHISDIEG YVP+ GDEV Y++C IPPK EK QAV V I HL
Sbjct: 78 SKGHGFITPADGGADIFVHISDIEGEYVPVAGDEVTYKMCTIPPKNEKLQAVEVVITHLA 137
Query: 129 PEV-HLQW 135
P H W
Sbjct: 138 PGTKHETW 145
>gi|4583307|gb|AAD25021.1|AF115345_1 calcium-regulated heat stable protein CRHSP-24 [Homo sapiens]
Length = 147
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQVPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|345305338|ref|XP_001506560.2| PREDICTED: calcium-regulated heat stable protein 1-like
[Ornithorhynchus anatinus]
Length = 249
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA + PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 141 IPSPLPTRRTRTFSATVRASEGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 200
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 201 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLVPGTKHETW 242
>gi|74181788|dbj|BAE32601.1| unnamed protein product [Mus musculus]
Length = 148
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 40 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV + I HL P H W
Sbjct: 100 YVPVEGDEVTYKMCSIPPKNEKLQAVELVITHLAPGTKHETW 141
>gi|395859587|ref|XP_003802116.1| PREDICTED: calcium-regulated heat stable protein 1 [Otolemur
garnettii]
Length = 147
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV +++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTFKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSG 142
>gi|147902682|ref|NP_001088341.1| cold shock domain containing C2, RNA binding [Xenopus laevis]
gi|54038112|gb|AAH84399.1| LOC495181 protein [Xenopus laevis]
Length = 152
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 8/116 (6%)
Query: 21 SPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSG 80
SP HL +PSP+ TRRTRT S + RA + P+ G K F RSKGHGFITP+ G
Sbjct: 37 SPMRGHL-------IPSPLPTRRTRTFSATVRASEGPLSKGVCKCFSRSKGHGFITPEDG 89
Query: 81 EPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
P +F+HISDIEG YVP+ GDEV Y++C IPPK EK+QAV V+I HL P H W
Sbjct: 90 GPDIFLHISDIEGEYVPMEGDEVTYKVCTIPPKNEKHQAVEVKITHLAPGSKHETW 145
>gi|225708686|gb|ACO10189.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
Length = 189
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 36 PSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPD---SGEPAVFVHISDIE 92
P +TRRTRTES S + +N VE G +K FCRS+G GF+TP+ +G F+HISDIE
Sbjct: 64 PETFVTRRTRTESTSGKTTENLVE-GTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIE 122
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
G +VP D V++++CPIPP+FEK QAV V I + TPEVH +WD P
Sbjct: 123 GEFVPRRNDTVQFKVCPIPPRFEKFQAVQVRITNFTPEVHHKWDVP 168
>gi|225709220|gb|ACO10456.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
gi|225711724|gb|ACO11708.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
Length = 189
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 36 PSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPD---SGEPAVFVHISDIE 92
P +TRRTRTES S + +N VE G +K FCRS+G GF+TP+ +G F+HISDIE
Sbjct: 64 PETFVTRRTRTESTSGKTTENLVE-GTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIE 122
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
G +VP D V++++CPIPP+FEK QAV V I + TPEVH +WD P
Sbjct: 123 GEFVPRRNDTVQFKVCPIPPRFEKFQAVQVRITNFTPEVHHKWDVP 168
>gi|339247005|ref|XP_003375136.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
Length = 311
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 4/107 (3%)
Query: 36 PSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPA---VFVHISDIE 92
PSP+IT+R R S+ RA PV G+++ FCR +GHG+ITP PA +FVHISD+E
Sbjct: 193 PSPLITKRERRPSLCERAASGPVHYGRVRYFCRERGHGYITPLDQNPAGEDIFVHISDVE 252
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDSP 138
G Y P GDEV Y+LCPIPPKFEK QAVHV + +L V H +WD P
Sbjct: 253 GDYAPHDGDEVTYKLCPIPPKFEKMQAVHVVLRNLVAGVKHERWDQP 299
>gi|432871308|ref|XP_004071902.1| PREDICTED: calcium-regulated heat stable protein 1-like [Oryzias
latipes]
Length = 158
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRR RT S + RA + PV TG K F RSKGHGFITP G +FVHISDIEG
Sbjct: 50 IPSPLPTRRNRTYSATARASEGPVFTGVCKCFSRSKGHGFITPSDGGSDIFVHISDIEGE 109
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 110 YVPVEGDEVSYKVCAIPPKHEKVQAVEVAITHLKPGTKHETW 151
>gi|256088411|ref|XP_002580331.1| hypothetical protein [Schistosoma mansoni]
gi|350645173|emb|CCD60115.1| hypothetical protein Smp_093830.1 [Schistosoma mansoni]
Length = 112
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 72/107 (67%)
Query: 33 LSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ +PSPI +R RT+S S A + GKI FCR KGHGFI PD+G+ +FVH+ DI+
Sbjct: 6 MLIPSPIYHKRNRTKSQSEGAFKGEYGIGKIISFCRDKGHGFIKPDNGDDCLFVHVFDID 65
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSPS 139
G YVP+ GD V+YR IPPK EK QAVHV IV+L E H WD P+
Sbjct: 66 GEYVPIEGDVVEYRKMLIPPKNEKYQAVHVRIVNLNSEKHKTWDEPA 112
>gi|348517889|ref|XP_003446465.1| PREDICTED: calcium-regulated heat stable protein 1-like
[Oreochromis niloticus]
Length = 158
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRR RT S + RA + PV TG K F RSKGHGFITP G +FVHISDIEG
Sbjct: 50 IPSPLPTRRNRTCSATARASEGPVFTGVCKCFSRSKGHGFITPSDGGADIFVHISDIEGE 109
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 110 YVPVEGDEVSYKVCSIPPKLEKIQAVEVTITHLKPGTKHETW 151
>gi|154147690|ref|NP_001093718.1| cold shock domain containing C2, RNA binding [Xenopus (Silurana)
tropicalis]
gi|134025813|gb|AAI35982.1| csdc2 protein [Xenopus (Silurana) tropicalis]
Length = 151
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVHISDIEG
Sbjct: 43 LPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHISDIEGE 102
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV +++CPIPPK +K QAV V + HL+P H W
Sbjct: 103 YVPVEGDEVTFKMCPIPPKNQKFQAVEVILTHLSPHTKHETW 144
>gi|126343688|ref|XP_001363729.1| PREDICTED: cold shock domain-containing protein C2-like
[Monodelphis domestica]
Length = 154
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + HL P H W
Sbjct: 106 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTHLAPHTKHETW 147
>gi|395540690|ref|XP_003772285.1| PREDICTED: cold shock domain-containing protein C2 [Sarcophilus
harrisii]
Length = 154
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + HL P H W
Sbjct: 106 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTHLAPHTKHETW 147
>gi|301620234|ref|XP_002939486.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 214
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 76/117 (64%), Gaps = 8/117 (6%)
Query: 21 SPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSG 80
SP HL +PSP+ TRRTRT S + RA + PV G K F RSKGHGFITP G
Sbjct: 99 SPMRGHL-------IPSPLPTRRTRTFSATVRASEGPVYKGVCKCFSRSKGHGFITPVDG 151
Query: 81 EPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQWD 136
P +F+HISDIEG YVP GDEV Y++C +PPK EK+QAV V+I HL P H W
Sbjct: 152 GPDIFLHISDIEGEYVPAEGDEVTYKVCTVPPKNEKHQAVEVKITHLAPGSKHETWS 208
>gi|301620236|ref|XP_002939487.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
[Xenopus (Silurana) tropicalis]
gi|301620238|ref|XP_002939488.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
[Xenopus (Silurana) tropicalis]
gi|301620240|ref|XP_002939489.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4
[Xenopus (Silurana) tropicalis]
gi|301620242|ref|XP_002939490.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5
[Xenopus (Silurana) tropicalis]
Length = 153
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 76/116 (65%), Gaps = 8/116 (6%)
Query: 21 SPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSG 80
SP HL +PSP+ TRRTRT S + RA + PV G K F RSKGHGFITP G
Sbjct: 38 SPMRGHL-------IPSPLPTRRTRTFSATVRASEGPVYKGVCKCFSRSKGHGFITPVDG 90
Query: 81 EPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
P +F+HISDIEG YVP GDEV Y++C +PPK EK+QAV V+I HL P H W
Sbjct: 91 GPDIFLHISDIEGEYVPAEGDEVTYKVCTVPPKNEKHQAVEVKITHLAPGSKHETW 146
>gi|348569294|ref|XP_003470433.1| PREDICTED: cold shock domain-containing protein C2-like [Cavia
porcellus]
Length = 211
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 103 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 162
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 163 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 206
>gi|431900038|gb|ELK07973.1| Cold shock domain-containing protein C2 [Pteropus alecto]
Length = 198
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S + LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 84 SVTSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHV 143
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 144 SDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 192
>gi|149743340|ref|XP_001500375.1| PREDICTED: cold shock domain-containing protein C2-like [Equus
caballus]
Length = 153
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S ++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 39 SVSSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHV 98
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 99 SDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 147
>gi|291410316|ref|XP_002721452.1| PREDICTED: cold shock domain containing C2, RNA binding-like
[Oryctolagus cuniculus]
Length = 200
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 92 LPSPLPTKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 151
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 152 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 195
>gi|343432670|ref|NP_001230349.1| cold shock domain-containing protein C2 [Sus scrofa]
Length = 153
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 41 SSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 100
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
IEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 101 IEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETW 146
>gi|225719590|gb|ACO15641.1| Cold shock domain-containing protein C2 [Caligus clemensi]
Length = 171
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 21 SPQEPHLHSNNTLSL----PSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFIT 76
S E L S LS P TRRTRTES S + +N + G +K FCRS+G GFIT
Sbjct: 27 SCSESALSSTTVLSESLDPPETFATRRTRTESTSGKTTEN-IHEGTVKYFCRSRGFGFIT 85
Query: 77 PD---SGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
P+ + F+HISDIEG +VP D V++++CPIPP+FEK QAV V I++ TPEVH
Sbjct: 86 PNKSVNDNQEFFMHISDIEGEFVPRRNDSVQFKVCPIPPRFEKFQAVQVRIINFTPEVHH 145
Query: 134 QWDSP 138
+WD P
Sbjct: 146 KWDVP 150
>gi|351708340|gb|EHB11259.1| Cold shock domain-containing protein C2 [Heterocephalus glaber]
Length = 152
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
+ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 38 GGTSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHV 97
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 98 SDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 147
>gi|440893627|gb|ELR46324.1| Cold shock domain-containing protein C2, partial [Bos grunniens
mutus]
Length = 165
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S ++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 51 SVSSRDLPSPLPTKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHV 110
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 111 SDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 160
>gi|301787827|ref|XP_002929327.1| PREDICTED: cold shock domain-containing protein C2-like [Ailuropoda
melanoleuca]
gi|281340937|gb|EFB16521.1| hypothetical protein PANDA_019484 [Ailuropoda melanoleuca]
Length = 153
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 41 SSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 100
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
IEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 101 IEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|410965709|ref|XP_003989384.1| PREDICTED: cold shock domain-containing protein C2 [Felis catus]
Length = 153
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 41 SSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 100
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
IEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 101 IEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|395819680|ref|XP_003783208.1| PREDICTED: cold shock domain-containing protein C2 [Otolemur
garnettii]
Length = 153
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 147
>gi|56758052|gb|AAW27166.1| SJCHGC09481 protein [Schistosoma japonicum]
gi|226488138|emb|CAX75734.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489182|emb|CAX75735.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489184|emb|CAX75736.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489186|emb|CAX75737.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489188|emb|CAX75738.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
Length = 117
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 72/109 (66%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
+ L +PSPI +R RTES S A G+I FCR KGHGFI PD+G +FVH+ D
Sbjct: 9 SNLVIPSPIFHKRNRTESQSESASTGEHGVGRIVSFCRKKGHGFIKPDNGGDYLFVHVFD 68
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSPS 139
I+G YVP+ GD V+YR IPPK EK QAVHV IV+L+ H+ WD P+
Sbjct: 69 IDGEYVPIEGDVVEYRKMLIPPKNEKYQAVHVRIVNLSSGKHITWDEPA 117
>gi|41056167|ref|NP_956856.1| calcium-regulated heat stable protein 1 [Danio rerio]
gi|33989487|gb|AAH56576.1| Calcium regulated heat stable protein 1 [Danio rerio]
Length = 155
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 74/116 (63%), Gaps = 8/116 (6%)
Query: 21 SPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSG 80
SP HL +PSP+ TRR RT S + RA + PV +G K F RSKGHGFITP G
Sbjct: 40 SPMRSHL-------IPSPLPTRRNRTCSAAARAAEGPVFSGVCKCFSRSKGHGFITPSDG 92
Query: 81 EPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
+FVHISDI+G YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 93 GNDIFVHISDIDGEYVPVEGDEVCYKICSIPPKHEKIQAVEVTITHLAPGTKHETW 148
>gi|281485622|ref|NP_001164013.1| cold shock domain-containing protein C2 [Rattus norvegicus]
gi|32129826|sp|Q63430.3|CSDC2_RAT RecName: Full=Cold shock domain-containing protein C2; AltName:
Full=RNA-binding protein PIPPin
gi|149065816|gb|EDM15689.1| cold shock domain containing C2, RNA binding [Rattus norvegicus]
Length = 154
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 148
>gi|90075002|dbj|BAE87181.1| unnamed protein product [Macaca fascicularis]
gi|355563712|gb|EHH20274.1| hypothetical protein EGK_03091 [Macaca mulatta]
gi|355785029|gb|EHH65880.1| hypothetical protein EGM_02736 [Macaca fascicularis]
gi|380811794|gb|AFE77772.1| cold shock domain-containing protein C2 [Macaca mulatta]
gi|384941324|gb|AFI34267.1| cold shock domain-containing protein C2 [Macaca mulatta]
Length = 153
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|426225832|ref|XP_004007065.1| PREDICTED: cold shock domain-containing protein C2 [Ovis aries]
Length = 153
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S ++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 39 SISSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHV 98
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 99 SDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 147
>gi|6114756|emb|CAA62001.2| PIPPin protein [Rattus norvegicus]
Length = 227
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 119 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 178
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 179 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 221
>gi|363727797|ref|XP_003640424.1| PREDICTED: cold shock domain-containing protein C2 isoform 1
[Gallus gallus]
Length = 224
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 116 LPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 175
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + +L P H W
Sbjct: 176 YVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETW 217
>gi|116003971|ref|NP_001070345.1| cold shock domain-containing protein C2 [Bos taurus]
gi|115305132|gb|AAI23466.1| Cold shock domain containing C2, RNA binding [Bos taurus]
gi|296486964|tpg|DAA29077.1| TPA: RNA-binding protein pippin [Bos taurus]
Length = 153
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S ++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 39 SVSSRDLPSPLPTKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHV 98
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 99 SDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 147
>gi|24307959|ref|NP_055275.1| cold shock domain-containing protein C2 [Homo sapiens]
gi|297709002|ref|XP_002831237.1| PREDICTED: cold shock domain-containing protein C2 isoform 2 [Pongo
abelii]
gi|397487172|ref|XP_003814681.1| PREDICTED: cold shock domain-containing protein C2 [Pan paniscus]
gi|402884381|ref|XP_003905664.1| PREDICTED: cold shock domain-containing protein C2 [Papio anubis]
gi|32129852|sp|Q9Y534.1|CSDC2_HUMAN RecName: Full=Cold shock domain-containing protein C2; AltName:
Full=RNA-binding protein PIPPin
gi|5931606|dbj|BAA84704.1| RNA-binding protein PIPPin [Homo sapiens]
gi|45501284|gb|AAH67113.1| CSDC2 protein [Homo sapiens]
gi|47678445|emb|CAG30343.1| dJ347H13.2 [Homo sapiens]
gi|57997216|emb|CAD39079.2| hypothetical protein [Homo sapiens]
gi|109451154|emb|CAK54438.1| CSDC2 [synthetic construct]
gi|109451732|emb|CAK54737.1| CSDC2 [synthetic construct]
gi|190689775|gb|ACE86662.1| cold shock domain containing C2, RNA binding protein [synthetic
construct]
gi|190691143|gb|ACE87346.1| cold shock domain containing C2, RNA binding protein [synthetic
construct]
gi|306921241|dbj|BAJ17700.1| cold shock domain containing C2, RNA binding [synthetic construct]
gi|410293714|gb|JAA25457.1| cold shock domain containing C2, RNA binding [Pan troglodytes]
gi|410340177|gb|JAA39035.1| cold shock domain containing C2, RNA binding [Pan troglodytes]
Length = 153
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|354504597|ref|XP_003514360.1| PREDICTED: cold shock domain-containing protein C2-like [Cricetulus
griseus]
gi|344257852|gb|EGW13956.1| Cold shock domain-containing protein C2 [Cricetulus griseus]
Length = 154
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 149
>gi|344296180|ref|XP_003419787.1| PREDICTED: cold shock domain-containing protein C2-like [Loxodonta
africana]
Length = 153
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|16359300|gb|AAH16109.1| Cold shock domain containing C2, RNA binding [Mus musculus]
gi|148672599|gb|EDL04546.1| cold shock domain containing C2, RNA binding [Mus musculus]
Length = 154
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 149
>gi|119580846|gb|EAW60442.1| cold shock domain containing C2, RNA binding [Homo sapiens]
Length = 222
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 114 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 173
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 174 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 217
>gi|225712740|gb|ACO12216.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
gi|225713682|gb|ACO12687.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
gi|290561012|gb|ADD37908.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus
salmonis]
Length = 188
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 4/101 (3%)
Query: 41 TRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPD---SGEPAVFVHISDIEGCYVP 97
TRRTRTES + + ++N + G +K FCRS+G GFITP+ + F+HISDIEG YVP
Sbjct: 68 TRRTRTESTAGKIVEN-LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVP 126
Query: 98 LPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
D+VK+++CPIPP+FEK QAV V I++ TPEVH +WD P
Sbjct: 127 RRDDQVKFKVCPIPPRFEKFQAVQVRIINFTPEVHHKWDVP 167
>gi|118082706|ref|XP_422970.2| PREDICTED: cold shock domain-containing protein C2 isoform 2
[Gallus gallus]
gi|326912009|ref|XP_003202347.1| PREDICTED: cold shock domain-containing protein C2-like [Meleagris
gallopavo]
Length = 153
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + +L P H W
Sbjct: 105 YVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETWSG 148
>gi|269914112|ref|NP_663448.2| cold shock domain-containing protein C2 [Mus musculus]
gi|408360036|sp|Q91YQ3.2|CSDC2_MOUSE RecName: Full=Cold shock domain-containing protein C2; AltName:
Full=RNA-binding protein PIPPin
gi|26324880|dbj|BAC26194.1| unnamed protein product [Mus musculus]
gi|74208901|dbj|BAE21201.1| unnamed protein product [Mus musculus]
Length = 154
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 149
>gi|47216902|emb|CAG02074.1| unnamed protein product [Tetraodon nigroviridis]
Length = 151
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRR RT S + A Q PV TG K F RSKGHGFITP G +FVHISDIEG
Sbjct: 44 IPSPLPTRRNRTHSATAYASQGPVFTGVCKCFSRSKGHGFITPSDGGKDIFVHISDIEGE 103
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK + QAV V I HL P H W
Sbjct: 104 YVPIEGDEVSYKICSIPPKCQAVQAVEVTITHLKPGTKHETW 145
>gi|449481798|ref|XP_002197370.2| PREDICTED: cold shock domain-containing protein C2 [Taeniopygia
guttata]
Length = 251
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 143 LPSPLPTKRTRTYSATARASAGPIFKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 202
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + +L P H W
Sbjct: 203 YVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETW 244
>gi|403282909|ref|XP_003932876.1| PREDICTED: cold shock domain-containing protein C2 [Saimiri
boliviensis boliviensis]
Length = 153
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F R++GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRAQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|449283296|gb|EMC89973.1| Cold shock domain-containing protein C2, partial [Columba livia]
Length = 162
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 54 LPSPLPTKRTRTYSATARASAGPIFKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 113
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + +L P H W
Sbjct: 114 YVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETW 155
>gi|390480942|ref|XP_002763968.2| PREDICTED: cold shock domain-containing protein C2-like [Callithrix
jacchus]
Length = 153
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F R++GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRAQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|444723803|gb|ELW64433.1| Cold shock domain-containing protein C2 [Tupaia chinensis]
Length = 154
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
T LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 41 QTRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 100
Query: 91 -IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
IEG YVP+ GDEV Y++CPIPPK +K QAV V + HL P H W
Sbjct: 101 SIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTHLAPHTPHETWSG 149
>gi|327272546|ref|XP_003221045.1| PREDICTED: cold shock domain-containing protein C2-like [Anolis
carolinensis]
Length = 153
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GD V Y++CPIPPK +K QAV V + HL P H W
Sbjct: 105 YVPVEGDVVTYKICPIPPKNQKFQAVEVVLTHLAPHTKHETW 146
>gi|410925164|ref|XP_003976051.1| PREDICTED: calcium-regulated heat stable protein 1-like [Takifugu
rubripes]
Length = 159
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRR RT S + A PV TG K F RSKGHGFITP G +FVHISD+EG
Sbjct: 51 IPSPLPTRRNRTHSATANAALGPVFTGVCKCFSRSKGHGFITPSDGGKDIFVHISDVEGE 110
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK + QAV V I HL P H W
Sbjct: 111 YVPIEGDEVSYKICSIPPKLQAVQAVEVTITHLKPGTKHETW 152
>gi|344292116|ref|XP_003417774.1| PREDICTED: LOW QUALITY PROTEIN: calcium-regulated heat stable
protein 1-like [Loxodonta africana]
Length = 147
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGXXXQRVCKCFCRSKGHGFITPXDGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>gi|189066655|dbj|BAG36202.1| unnamed protein product [Homo sapiens]
Length = 153
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPMFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>gi|225706812|gb|ACO09252.1| Calcium-regulated heat stable protein 1 [Osmerus mordax]
Length = 163
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRR RT S S RA + P TG K F RS+GHGFITP G +FVHISDI+G
Sbjct: 55 IPSPLPTRRNRTFSASARAAEGPSFTGVCKCFSRSRGHGFITPSDGGNDIFVHISDIDGE 114
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
YVP+ GDEV Y++C +PPK +K QAV V I+HL P H W
Sbjct: 115 YVPVEGDEVSYKICSLPPKCDKVQAVDVTIIHLKPGSKHETW 156
>gi|410895837|ref|XP_003961406.1| PREDICTED: cold shock domain-containing protein C2-like [Takifugu
rubripes]
Length = 158
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K F RS+GHGFI P G +FVHISDIEG
Sbjct: 50 LPSPLPTKRTRTYSATVRAKSGPVYKGVCKNFSRSQGHGFIRPSHGGEDIFVHISDIEGE 109
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CP+PPK +K QAV V I HL P H W
Sbjct: 110 YVPMEGDEVTYKVCPVPPKNQKFQAVDVVITHLNPGTKHETW 151
>gi|317419174|emb|CBN81211.1| Cold shock domain-containing protein C2 [Dicentrarchus labrax]
Length = 157
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K F RS+GHGFI P G +FVHISDIEG
Sbjct: 49 LPSPLPTKRTRTYSATVRAKSGPVFKGVCKNFSRSQGHGFIRPSHGGEDIFVHISDIEGE 108
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V I HL P H W
Sbjct: 109 YVPMEGDEVTYKVCPIPPKNQKIQAVDVVITHLNPGTKHETW 150
>gi|348502375|ref|XP_003438743.1| PREDICTED: cold shock domain-containing protein C2-like
[Oreochromis niloticus]
Length = 157
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K F RS+GHGFI P G +FVHISDIEG
Sbjct: 49 LPSPLPTKRTRTYSATVRAKSGPVFKGVCKNFSRSQGHGFIRPSHGGEDIFVHISDIEGE 108
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V I HL P H W
Sbjct: 109 YVPMEGDEVTYKVCPIPPKNQKIQAVDVMITHLNPGTKHETW 150
>gi|326929252|ref|XP_003210782.1| PREDICTED: calcium-regulated heat stable protein 1-like, partial
[Meleagris gallopavo]
Length = 102
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 42 RRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGD 101
RRTRT S + RA + P+ G K FCRSKGHGFI+P G P +FVHISDIEG YVP+ GD
Sbjct: 1 RRTRTYSATVRASEGPIYKGVCKCFCRSKGHGFISPADGGPDIFVHISDIEGEYVPVSGD 60
Query: 102 EVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
EV Y++C IPPK EK QAV V I HL P H W
Sbjct: 61 EVTYKVCTIPPKNEKLQAVEVVITHLAPGTKHETW 95
>gi|47226133|emb|CAG04507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K F RS+GHGFI P G +FVH+SDIEG
Sbjct: 58 LPSPLPTKRTRTYSATARAKSGPVYKGVCKNFSRSQGHGFIRPSHGGEDIFVHVSDIEGE 117
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
YVP GDEV Y++CPIPPK +K QAV V I HL P H W
Sbjct: 118 YVPTEGDEVTYKVCPIPPKNQKFQAVDVVITHLNPGSKHETW 159
>gi|395747460|ref|XP_003778612.1| PREDICTED: LOW QUALITY PROTEIN: calcium-regulated heat stable
protein 1 [Pongo abelii]
Length = 149
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 71/103 (68%), Gaps = 2/103 (1%)
Query: 35 LPSPIITRRTRTESIS-NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+PSP+ TRRTRT S + + A Q P G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 40 VPSPLPTRRTRTFSATVSVASQGPRLQGVCKCFCRSKGHGFITPADGGPDIFLHISDVEG 99
Query: 94 CYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 100 EYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 142
>gi|355681216|gb|AER96745.1| cold shock domain containing C2, RNA binding protein [Mustela
putorius furo]
Length = 135
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 71/98 (72%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 38 SSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 97
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLT 128
IEG YVP+ GDEV Y++CPIPPK +K QAV V + L
Sbjct: 98 IEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLA 135
>gi|348511265|ref|XP_003443165.1| PREDICTED: cold shock domain-containing protein C2-like
[Oreochromis niloticus]
Length = 155
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 2 SGSPLPFENKKPALSSPMLSPQEPHLHSNNT----LSLPSPIITRRTRTESISNRALQNP 57
SG+PL + LS P LS + LPSP+ T+RTRT S + RA P
Sbjct: 10 SGTPLRSPSSSVTLSFPFLSERSRVWEEGREQPLPRELPSPLPTKRTRTYSATVRAHSGP 69
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
V G K F RS+GHGFI P G +FVHISDIEG YVP+ GDEV Y++C +PPK K
Sbjct: 70 VFKGVCKNFSRSQGHGFIQPSHGGEDIFVHISDIEGEYVPVEGDEVTYKVCRVPPKNLKV 129
Query: 118 QAVHVEIVHLTPEV-HLQW 135
QAV V+I+HL P H W
Sbjct: 130 QAVEVKIIHLKPGTKHETW 148
>gi|47206294|emb|CAF93182.1| unnamed protein product [Tetraodon nigroviridis]
Length = 158
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 2 SGSPLPFENKKPALSSPMLSPQ----EPHLHSNNTLSLPSPIITRRTRTESISNRALQNP 57
SG+PL N ALS P L + E LPSP+ T+RTRT S + RA P
Sbjct: 13 SGTPLRSPNTSLALSFPFLRERSRVWEDGKEQQLPRDLPSPLPTKRTRTYSATVRAHSGP 72
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
V G K F RS+GHGFI P +G +FVHISDIEG YVP+ GDEV Y++ IPPK K
Sbjct: 73 VFKGVCKNFSRSQGHGFIRPSNGGEDIFVHISDIEGEYVPVEGDEVTYKVSRIPPKNLKV 132
Query: 118 QAVHVEIVHLTPEV-HLQW 135
QAV V+I HL P H W
Sbjct: 133 QAVEVKITHLNPGTKHETW 151
>gi|225712200|gb|ACO11946.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
Length = 188
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 41 TRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPD---SGEPAVFVHISDIEGCYVP 97
TRRTRTES + + ++N + G +K FCRS+G GFITP+ + F+HISDIEG YVP
Sbjct: 68 TRRTRTESTAGKIVEN-LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVP 126
Query: 98 LPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSP 138
+VK+++CPIPP+FEK QAV V I++ TPEVH +WD P
Sbjct: 127 RRDCQVKFKVCPIPPRFEKFQAVQVRIINFTPEVHHKWDVP 167
>gi|213512442|ref|NP_001133414.1| cold shock domain-containing protein C2 [Salmo salar]
gi|209153912|gb|ACI33188.1| Cold shock domain-containing protein C2 [Salmo salar]
Length = 159
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 34 SLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
SLPSP+ T+R RT S + RA P G K FCRS+GHGFI P +G +FVHISDIEG
Sbjct: 46 SLPSPLPTKRNRTYSATVRATTGPAFKGVCKSFCRSQGHGFIRPTNGGDDIFVHISDIEG 105
Query: 94 CYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++ IPPK K QAV V+IVHL P H W
Sbjct: 106 EYVPVEGDEVTYKVSRIPPKNLKIQAVEVKIVHLNPGTKHETW 148
>gi|327280107|ref|XP_003224795.1| PREDICTED: calcium-regulated heat stable protein 1-like [Anolis
carolinensis]
Length = 149
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S ++RA + P G K F R+KGHGFITP+ G VFVHISDIEG
Sbjct: 39 IPSPLPTRRTRTFSAASRASEGPTYKGVCKCFSRAKGHGFITPEEGGLDVFVHISDIEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDE+ Y+L +PPK ++ QAV V I HL P H W
Sbjct: 99 YVPVAGDEMTYKLTTVPPKNDRLQAVEVVITHLAPGTKHETW 140
>gi|161611902|gb|AAI55634.1| LOC557375 protein [Danio rerio]
Length = 162
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 13 PALSSPM---LSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRS 69
PAL SP LS Q P + LPSP+ T+RTRT S + RA PV G K+F RS
Sbjct: 29 PALRSPRSAPLSLQFPFRSAVPPKELPSPLPTKRTRTYSATVRANAGPVFKGVCKDFSRS 88
Query: 70 KGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP 129
+GHGFI P G +F HISDIEG YVP+ GDEV Y++C IPPK K QAV V I HL
Sbjct: 89 QGHGFIKPAHGGDDIFFHISDIEGEYVPVEGDEVTYKVCLIPPKNVKVQAVEVTITHLKA 148
Query: 130 EV-HLQW 135
H W
Sbjct: 149 GAKHETW 155
>gi|432921471|ref|XP_004080166.1| PREDICTED: cold shock domain-containing protein C2-like [Oryzias
latipes]
Length = 163
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 37 SPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYV 96
SP+ T+RTRT S + RA PV G K F RS+GHGF+ P G +FVHISDIEG YV
Sbjct: 57 SPLPTKRTRTYSATVRARSGPVFKGVCKNFSRSQGHGFLRPSHGGEDIFVHISDIEGEYV 116
Query: 97 PLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
P+ GDEV Y++CPIPPK K QAV V I HL P H W
Sbjct: 117 PVEGDEVTYKVCPIPPKNRKFQAVEVVITHLKPGTKHETW 156
>gi|345776885|ref|XP_538352.3| PREDICTED: cold shock domain-containing protein C2 [Canis lupus
familiaris]
Length = 153
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 41 SSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 100
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
I+G Y+P+ +V Y++CPIPPK +K QAV V + L P H W
Sbjct: 101 IQGEYLPMESHQVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 147
>gi|126337665|ref|XP_001363238.1| PREDICTED: calcium-regulated heat stable protein 1-like
[Monodelphis domestica]
Length = 146
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S++ A + P+ G K F RSKGHGFITP G P +F+ ISD+EG
Sbjct: 39 IPSPLPTRRTRTFSVTV-ASEGPIYKGVCKCFYRSKGHGFITPADGGPDIFLLISDVEGE 97
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
Y+P+ GDEV Y++C IPPK EK+QAV V I HL P H W
Sbjct: 98 YMPMEGDEVTYKMCSIPPKNEKHQAVEVVITHLAPGTKHETWSG 141
>gi|432871036|ref|XP_004071839.1| PREDICTED: cold shock domain-containing protein C2-like [Oryzias
latipes]
Length = 155
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 2 SGSPLPFENKKPALSSPMLSPQEPHLHSNNTL----SLPSPIITRRTRTESISNRALQNP 57
SG+PL N LS P L LPSP+ T+R RT S + RA P
Sbjct: 10 SGTPLRSPNAPLTLSFPFLREGSRVWEERREQPVPHDLPSPLPTKRNRTYSATVRAHSGP 69
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
V G K F RS+GHGFI P G +FVHISDIEG YVP+ GDEV Y++C +PPK K
Sbjct: 70 VFKGVCKNFSRSQGHGFIQPSHGGEDIFVHISDIEGEYVPVEGDEVTYKVCRVPPKNVKV 129
Query: 118 QAVHVEIVHLTPEV-HLQW 135
QAV V+I HL P H W
Sbjct: 130 QAVDVKITHLNPGTKHETW 148
>gi|410925779|ref|XP_003976357.1| PREDICTED: cold shock domain-containing protein C2-like [Takifugu
rubripes]
Length = 230
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 2 SGSPLPFENKKPALSSPMLSPQ----EPHLHSNNTLSLPSPIITRRTRTESISNRALQNP 57
SG+PL + LS P L + E LPSP+ T+RTRT S + RA P
Sbjct: 85 SGTPLRSPDTSLTLSFPFLRERSRVWEDGKEQQLPRDLPSPLPTKRTRTYSATVRAHSGP 144
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
V G K F RS+GHGFI P + +FVHISDIEG YVP+ GDEV Y++ IPPK K
Sbjct: 145 VFKGVCKNFSRSQGHGFIRPSNSGEDIFVHISDIEGDYVPVEGDEVTYKVSRIPPKNLKV 204
Query: 118 QAVHVEIVHLTPEV-HLQW 135
QAV V+I HL P H W
Sbjct: 205 QAVEVKITHLNPGTKHETW 223
>gi|50540448|ref|NP_001002690.1| cold shock domain-containing protein C2 [Danio rerio]
gi|49903205|gb|AAH76447.1| Cold shock domain containing C2, RNA binding [Danio rerio]
gi|182891632|gb|AAI64903.1| Csdc2 protein [Danio rerio]
Length = 153
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 37 SPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYV 96
SP+ T+RTRT S S RA PV G K F RS+GHGFI P G +FVHISDIEG YV
Sbjct: 47 SPLPTKRTRTYSASVRAKSGPVYKGICKNFSRSQGHGFIRPSHGGEDIFVHISDIEGEYV 106
Query: 97 PLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
P+ GDEV Y++CP+PPK K QAV V I +L+ H W
Sbjct: 107 PMEGDEVTYKVCPVPPKNIKFQAVEVVITNLSSGRKHETW 146
>gi|198438072|ref|XP_002131596.1| PREDICTED: similar to LOC495181 protein [Ciona intestinalis]
Length = 163
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 10/125 (8%)
Query: 17 SPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFIT 76
+P +SP H +PSP++TRRTRT S S RA + PV G + F S+GHGFI
Sbjct: 38 TPTISPTSEH-----KFLVPSPMVTRRTRTYSASRRATEGPVHQGVCQFFSCSQGHGFIK 92
Query: 77 PDSG--EPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLT---PEV 131
P G + +F+HISDIEG YVPL GD + Y+L PPK EK QAV V IV + +
Sbjct: 93 PTDGSSDDLIFMHISDIEGDYVPLYGDILSYKLTRSPPKMEKFQAVEVRIVTMCIDGKDQ 152
Query: 132 HLQWD 136
H++WD
Sbjct: 153 HVRWD 157
>gi|449670805|ref|XP_002163744.2| PREDICTED: cold shock domain-containing protein C2-like [Hydra
magnipapillata]
Length = 147
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 33 LSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
S+PSPI RRTRT S+S A ++ + G + FCR KGHGF+ PD+ E VF+HISDIE
Sbjct: 38 FSIPSPIPCRRTRTTSVSKMAAESDLLNGTVVSFCREKGHGFVKPDNEERNVFLHISDIE 97
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDSPS 139
YV GD V++R P+PPK + AV V ++ L H +WD+ S
Sbjct: 98 DEYVVQTGDRVEFRTIPMPPKCVERMAVEVRLIELDKHKPHQRWDNKS 145
>gi|326530806|dbj|BAK01201.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 149
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 23 QEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEP 82
+ H H + L+LP+ +R RT S + R P G IK FCR+KGHGFI PD
Sbjct: 33 EHDHHHIHEYLALPN----KRVRTLSETERIASGPDYRGVIKNFCRNKGHGFIQPDGEAE 88
Query: 83 AVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDSPSP 140
VF+HISDIEG + P GD V ++ +PPK +K QAVHV VHL V H WD+ +P
Sbjct: 89 PVFLHISDIEGEWCPKEGDVVSFKKALMPPKMQKYQAVHVHFVHLKEGVKHEHWDNSNP 147
>gi|290463071|gb|ADD24583.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus
salmonis]
Length = 179
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 41 TRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPD---SGEPAVFVHISDIEGCYVP 97
TRRTRTES + + ++N + G +K FCRS+G GFITP+ + F+HISDIEG YVP
Sbjct: 68 TRRTRTESTAGKIVEN-LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVP 126
Query: 98 LPGDEVKYRLCPIPPKFEKNQAVHVEIVHL 127
D+VK+++CPIPP+FEK QAV V I++L
Sbjct: 127 RRDDQVKFKVCPIPPRFEKFQAVQVRIINL 156
>gi|297261183|ref|XP_001100705.2| PREDICTED: cold shock domain-containing protein C2-like [Macaca
mulatta]
Length = 116
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 50 SNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCP 109
+ RA PV G K+F RS+GHGFITP++G +FVH+SDIEG YVP+ GDEV Y++CP
Sbjct: 23 TARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCP 82
Query: 110 IPPKFEKNQAVHVEIVHLTPEV-HLQW 135
IPPK +K QAV V + L P H W
Sbjct: 83 IPPKNQKFQAVEVVLTQLAPHTPHETW 109
>gi|426394668|ref|XP_004063611.1| PREDICTED: cold shock domain-containing protein C2 [Gorilla gorilla
gorilla]
Length = 96
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 50 SNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCP 109
+ RA PV G K+F RS+GHGFITP++G +FVH+SDIEG YVP+ GDEV Y++CP
Sbjct: 3 TARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCP 62
Query: 110 IPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
IPPK +K QAV V + L P H W
Sbjct: 63 IPPKNQKFQAVEVVLTQLAPHTPHETWSG 91
>gi|195998678|ref|XP_002109207.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens]
gi|190587331|gb|EDV27373.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens]
Length = 116
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 61/101 (60%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRR R+ES RA+ G +F R KGHGFI P+ +FVHISDI G
Sbjct: 15 VPSPVPTRRLRSESTHERAVAGECRIGVCHDFHRDKGHGFIKPEDSNDLIFVHISDINGE 74
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQW 135
YV GD VK++ CP+PPK +K QAV V IV H +W
Sbjct: 75 YVLKAGDAVKFKTCPLPPKCDKLQAVDVTIVDADELSHERW 115
>gi|226371922|gb|ACO51586.1| Calcium-regulated heat stable protein 1 [Rana catesbeiana]
Length = 150
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA ++ V G K F RSKGHGFI P+ G P VF+HISDIEG
Sbjct: 42 IPSPLPTRRTRTSSAAARASESQVYKGVCKCFSRSKGHGFIIPEDGGPDVFLHISDIEGE 101
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV +++C IPPK EK QAV V I +L P H W
Sbjct: 102 YVPVEGDEVTFKICSIPPKNEKRQAVEVVITNLAPGTKHETW 143
>gi|260808771|ref|XP_002599180.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
gi|229284457|gb|EEN55192.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
Length = 121
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 17 SPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFIT 76
SPM SP + LPSP+ TRRTRT S S RA P++ G +K FCR KGHGFI
Sbjct: 8 SPMSSP------GKDGFLLPSPLPTRRTRTRSTSLRASAGPMKRGIVKNFCRQKGHGFIK 61
Query: 77 PDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
P G +FVHISDI+G YV GDEV Y+ CPIPPK K QA+ V I +L P H +W
Sbjct: 62 PHDGSDDIFVHISDIDGEYVLKDGDEVTYKECPIPPKNLKVQAIEVTIANLAPGTTHERW 121
>gi|321475492|gb|EFX86455.1| hypothetical protein DAPPUDRAFT_236661 [Daphnia pulex]
Length = 135
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 60/104 (57%), Gaps = 21/104 (20%)
Query: 35 LPSPIITRRTRTESISNRALQNPVE-TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
LP+PIIT+RTRT+S+ AL NPVE KI V H+ I+G
Sbjct: 29 LPNPIITKRTRTQSMLELALDNPVEHVLKI--------------------VLFHLFSIDG 68
Query: 94 CYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDS 137
YVP GDEV +R +PPK EK QAVHV+I + TPEVH +W S
Sbjct: 69 EYVPRIGDEVSFRKLLVPPKLEKYQAVHVQITNFTPEVHQRWTS 112
>gi|312385627|gb|EFR30071.1| hypothetical protein AND_00542 [Anopheles darlingi]
Length = 233
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHLQWDS 137
IEG YVPLPGDEV YRLC IPPK+EK QA+HV+I HLTPE H +W++
Sbjct: 176 IEGEYVPLPGDEVSYRLCSIPPKYEKVQAIHVQITHLTPEKHSRWET 222
>gi|313242234|emb|CBY34398.1| unnamed protein product [Oikopleura dioica]
Length = 157
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
+G + F R+KGHGF+ D F H+SD+ VP GD VKYR+ PIPPK+EK QA
Sbjct: 58 SGTVSAFSRTKGHGFLNSDEDGKQEFFHVSDVVSQIVPKEGDVVKYRVIPIPPKYEKYQA 117
Query: 120 VHVEIVH---LTPEVHLQWDS 137
V V I++ L E W S
Sbjct: 118 VQVTIMNEEKLLTEGRTTWSS 138
>gi|313231855|emb|CBY08967.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
+G + F R+KGHGF+ D F H+SD+ VP GD VKYR+ PIPPK+EK QA
Sbjct: 114 SGTVSAFSRTKGHGFLNSDEDGKQEFFHVSDVVSQIVPKEGDVVKYRVIPIPPKYEKYQA 173
Query: 120 VHVEIVH---LTPEVHLQWDS 137
V V I++ L E W S
Sbjct: 174 VQVTIMNEEKLLTEGRTTWSS 194
>gi|426381163|ref|XP_004057224.1| PREDICTED: calcium-regulated heat stable protein 1 [Gorilla
gorilla gorilla]
gi|426381165|ref|XP_004057225.1| PREDICTED: calcium-regulated heat stable protein 1 [Gorilla
gorilla gorilla]
gi|426381167|ref|XP_004057226.1| PREDICTED: calcium-regulated heat stable protein 1 [Gorilla
gorilla gorilla]
gi|426381169|ref|XP_004057227.1| PREDICTED: calcium-regulated heat stable protein 1 [Gorilla
gorilla gorilla]
gi|426381171|ref|XP_004057228.1| PREDICTED: calcium-regulated heat stable protein 1 [Gorilla
gorilla gorilla]
gi|426381173|ref|XP_004057229.1| PREDICTED: calcium-regulated heat stable protein 1 [Gorilla
gorilla gorilla]
Length = 94
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 41/56 (73%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HIS+
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISE 94
>gi|291390569|ref|XP_002711830.1| PREDICTED: calcium-regulated heat-stable protein (24kD)-like
[Oryctolagus cuniculus]
Length = 160
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 79 SGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
+G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 96 TGGPDIFLHISDVEGEYVPVEGDEVTYKMCCIPPKNEKLQAVEVVITHLAPGTKHETWSG 155
>gi|148232804|ref|NP_001080597.1| calcium regulated heat stable protein 1, 24kDa [Xenopus laevis]
gi|27696469|gb|AAH44047.1| Carhsp1-prov protein [Xenopus laevis]
Length = 100
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
+PSP+ TRRTRT S + RA + PV G K F RSKGHGFITP+ G P +F+HIS+
Sbjct: 45 IPSPLPTRRTRTFSATVRAAEGPVYKGVCKSFSRSKGHGFITPEDGGPDIFLHISE 100
>gi|332231339|ref|XP_003264854.1| PREDICTED: cold shock domain-containing protein C2 [Nomascus
leucogenys]
Length = 168
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+S+
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSE 100
>gi|345320352|ref|XP_003430275.1| PREDICTED: cold shock domain-containing protein C2-like, partial
[Ornithorhynchus anatinus]
Length = 99
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 40/55 (72%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+S
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGTEDIFVHVS 99
>gi|226488136|emb|CAX75733.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
Length = 78
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 31 NTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
+ L +PSPI +R RTES S A G+I FCR KGHGFI PD+G +FVH+ +
Sbjct: 9 SNLVIPSPIFHKRNRTESQSESASTGEHGVGRIVSFCRKKGHGFIKPDNGGDYLFVHVFE 68
Query: 91 IEGCYV 96
YV
Sbjct: 69 YAIHYV 74
>gi|358332752|dbj|GAA51365.1| cold shock domain-containing protein [Clonorchis sinensis]
Length = 70
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 33 LSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
+S+PSPI+ RR RT+S S A + G + EFCR +GHGFI PD A+F+H+
Sbjct: 13 MSIPSPILHRRNRTKSQSETAASAELGRGTVVEFCRERGHGFIKPDGDGDAIFLHV 68
>gi|345313688|ref|XP_003429420.1| PREDICTED: cold shock domain-containing protein C2-like, partial
[Ornithorhynchus anatinus]
Length = 53
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 91 IEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
IEG YVP+ GDEV Y++CPIPPK +K QAV V + HL P H W
Sbjct: 1 IEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTHLAPHTKHETWSG 48
>gi|334318787|ref|YP_004551346.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|384532244|ref|YP_005717848.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|433615393|ref|YP_007192189.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|333814420|gb|AEG07088.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|334099214|gb|AEG57223.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|429553607|gb|AGA08590.1| Cold shock protein [Sinorhizobium meliloti GR4]
Length = 90
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
L P I R S +N ++ + TG +K F + KG GFITPDSG P VFVHIS +
Sbjct: 4 LAVPGIDRYCEGCSATN---EDKMATGTVKFFAQDKGFGFITPDSGGPDVFVHISALGFG 60
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIV 125
G +V Y L K K++A +V I+
Sbjct: 61 GSLQDGQKVSYELGQ-DRKTGKSKAENVSIL 90
>gi|110634259|ref|YP_674467.1| cold-shock DNA-binding protein family protein [Chelativorans sp.
BNC1]
gi|110285243|gb|ABG63302.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 69
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFI PDSG+P VFVHIS +E G + G ++ + + PK K+
Sbjct: 3 TGTVKWFNATKGFGFIQPDSGQPDVFVHISAVEQAGMRSLVEGQKIDFEVVR-DPKSGKS 61
Query: 118 QAVHVEIV 125
A +++ V
Sbjct: 62 AAANLQAV 69
>gi|418405284|ref|ZP_12978691.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|359500756|gb|EHK73411.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
Length = 67
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F + KG+GFI+PD+G VFVH+S I+G + L G +V Y + K K++A
Sbjct: 4 GTVKFFNQEKGYGFISPDNGGTDVFVHVSAIDGGSLLLDGQKVTYEIGQ-DRKTGKSRAE 62
Query: 121 HVEIV 125
+V V
Sbjct: 63 NVRTV 67
>gi|402820600|ref|ZP_10870167.1| hypothetical protein IMCC14465_14010 [alpha proteobacterium
IMCC14465]
gi|402511343|gb|EJW21605.1| hypothetical protein IMCC14465_14010 [alpha proteobacterium
IMCC14465]
Length = 75
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F KG+GFITPD G P FVHI+ ++ G + + G VKY++ I K K
Sbjct: 3 TGIVKWFNTVKGYGFITPDDGTPDAFVHITAVQESGLRLIVEGQRVKYQM--IESKNGKF 60
Query: 118 QAVHVEIV 125
A ++E+V
Sbjct: 61 AAGNLELV 68
>gi|254474468|ref|ZP_05087854.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11]
gi|214028711|gb|EEB69546.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11]
Length = 68
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG+GFI PDSG VFVHIS +E + D K P + +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDSGGSDVFVHISAVERSGLTGLADNQKVNYELQPGRDGRE 60
Query: 118 QAVHVEIV 125
AV++E+V
Sbjct: 61 SAVNLELV 68
>gi|384531660|ref|YP_005717264.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|384540001|ref|YP_005724084.1| probabable CspA9 cold shock protein transcriptional regulator
[Sinorhizobium meliloti SM11]
gi|410689087|ref|YP_006962691.1| hypothetical protein [Sinorhizobium meliloti]
gi|333813836|gb|AEG06504.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|336035344|gb|AEH81275.1| probabable CspA9 cold shock protein transcriptional regulator
[Sinorhizobium meliloti SM11]
gi|387582570|gb|AFJ91369.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti]
Length = 67
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F + KG GFITPDSG P VFVHIS + G +V Y L K K+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDSGGPDVFVHISALGFGGSLQDGQKVSYELGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V I+
Sbjct: 60 KAENVSIL 67
>gi|424895654|ref|ZP_18319228.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393179881|gb|EJC79920.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 113
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 43 RTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPG 100
R RTE++ + N +G +K F +KG GFI PD G VFVHIS +E G + G
Sbjct: 33 RKRTETVEKEIVMN---SGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRELVEG 89
Query: 101 DEVKYRLCPIPPKFEKNQAVHVE 123
+++Y L K KN A +++
Sbjct: 90 QKIRYDLVR-DKKSGKNSADNLQ 111
>gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 192
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 45 RTESISNRALQNPVE----TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPL 98
RT S L+ P TG IK F SKG+GFI PD G P V VH++ + +G +
Sbjct: 11 RTAGSSEDGLEEPAGLVEVTGSIKWFDASKGYGFIVPDDGGPDVLVHVTCLRRDGFQTAM 70
Query: 99 PGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVH 132
G V +C + + QA V + L+ VH
Sbjct: 71 EGARV---VCEAVQRAKGRQAFRVLSLDLSTAVH 101
>gi|150378053|ref|YP_001314648.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150032600|gb|ABR64715.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 67
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
+ TG +K F + KG GFITPDSG P VFVHIS + G +V Y L
Sbjct: 1 MATGTVKFFAQDKGFGFITPDSGGPDVFVHISALGFAGSLQDGQKVSYEL 50
>gi|405382491|ref|ZP_11036274.1| cold shock protein [Rhizobium sp. CF142]
gi|397321084|gb|EJJ25509.1| cold shock protein [Rhizobium sp. CF142]
Length = 67
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
TGK+K F + KG GFITP+SG P VFVH+S +E G V Y L
Sbjct: 3 TGKVKFFNQDKGFGFITPESGGPDVFVHVSSLEYGDALKEGQSVSYDL 50
>gi|15890768|ref|NP_356440.1| cold shock protein [Agrobacterium fabrum str. C58]
gi|15159048|gb|AAK89225.1| cold shock protein [Agrobacterium fabrum str. C58]
Length = 76
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKF 114
++ + TG +K F + KG GFITPD+G P VFVHIS + G +V Y L K
Sbjct: 7 EDKMATGTVKFFAQDKGFGFITPDNGGPDVFVHISAVGFGGSLQDGQKVSYELGQ-DRKT 65
Query: 115 EKNQAVHVEIV 125
K++A +V ++
Sbjct: 66 GKSKAENVTLL 76
>gi|408380635|ref|ZP_11178218.1| Cold shock protein cspA [Agrobacterium albertimagni AOL15]
gi|407745489|gb|EKF57022.1| Cold shock protein cspA [Agrobacterium albertimagni AOL15]
Length = 67
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F + KG GFITPD+G P VFVHIS + G + G++V + + K K+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDNGGPDVFVHISAVGGGSLT-DGEKVSFDVGQ-DRKTGKS 58
Query: 118 QAVHVEIVH 126
+A +V +V
Sbjct: 59 KAENVTVVR 67
>gi|16262844|ref|NP_435637.1| CspA6 cold shock protein transcriptional regulator [Sinorhizobium
meliloti 1021]
gi|334319516|ref|YP_004552075.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|334321339|ref|YP_004557879.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|384541076|ref|YP_005725159.1| CspA6 cold shock protein [Sinorhizobium meliloti SM11]
gi|407690691|ref|YP_006814275.1| hypothetical protein BN406_04186 [Sinorhizobium meliloti Rm41]
gi|418404460|ref|ZP_12977918.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|433616586|ref|YP_007193381.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|14523481|gb|AAK65049.1| CspA6 cold shock protein [Sinorhizobium meliloti 1021]
gi|334099943|gb|AEG57952.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|334100127|gb|AEG58135.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|336036419|gb|AEH82350.1| CspA6 cold shock protein [Sinorhizobium meliloti SM11]
gi|359501584|gb|EHK74188.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|407321866|emb|CCM70468.1| unnamed protein product [Sinorhizobium meliloti Rm41]
gi|429554833|gb|AGA09782.1| Cold shock protein [Sinorhizobium meliloti GR4]
Length = 67
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F + KG GFITPD+G P VFVHIS + G +V Y L K K+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDNGGPDVFVHISALGFGGSLQDGQKVSYELGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V I+
Sbjct: 60 KAENVSIL 67
>gi|33594722|ref|NP_882366.1| cold shock-like protein [Bordetella pertussis Tohama I]
gi|384206019|ref|YP_005591758.1| putative cold shock-like protein [Bordetella pertussis CS]
gi|408417459|ref|YP_006628166.1| cold shock-like protein [Bordetella pertussis 18323]
gi|33564798|emb|CAE44126.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
gi|332384133|gb|AEE68980.1| putative cold shock-like protein [Bordetella pertussis CS]
gi|401779629|emb|CCJ65171.1| putative cold shock-like protein [Bordetella pertussis 18323]
Length = 68
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG+GFITPDSG VF H S I+G Y L G EV++ + +P
Sbjct: 2 AQKGKVKWFNADKGYGFITPDSGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDVP 57
>gi|194337522|ref|YP_002019316.1| cold-shock DNA-binding domain-containing protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309999|gb|ACF44699.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 74
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
+TG +K F + KG GFI PD+G VFVHI+++E G D+VKY + EK
Sbjct: 8 DTGTVKWFNKMKGFGFIIPDNGGADVFVHINELEKSGLATLNEADKVKYDMV------EK 61
Query: 117 NQAVHVEIVHL 127
N V + L
Sbjct: 62 NGKVAAGNIQL 72
>gi|85715497|ref|ZP_01046478.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85697692|gb|EAQ35568.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 70
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
V TG +K F KG+GFI PDSG VFVHIS +E G GD++ Y + K
Sbjct: 4 VATGTVKWFNGQKGYGFIQPDSGGKDVFVHISAVERAGLNSLNEGDKISYEVVANRGK 61
>gi|365856871|ref|ZP_09396878.1| cold-shock DNA-binding domain protein [Acetobacteraceae bacterium
AT-5844]
gi|363717289|gb|EHM00668.1| cold-shock DNA-binding domain protein [Acetobacteraceae bacterium
AT-5844]
Length = 68
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ G +K F +KG GFI PD G VF+HISD++ G P GD+++Y L
Sbjct: 1 MAVGTVKWFNTTKGFGFIQPDDGSKDVFLHISDVQRSGIREPREGDKLQYEL 52
>gi|335037755|ref|ZP_08531058.1| cold shock protein [Agrobacterium sp. ATCC 31749]
gi|333790947|gb|EGL62341.1| cold shock protein [Agrobacterium sp. ATCC 31749]
Length = 96
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
++ + TG +K F + KG GFITPD+G P VFVHIS + G +V Y L
Sbjct: 27 EDKMATGTVKFFAQDKGFGFITPDNGGPDVFVHISAVGFGGSLQDGQKVSYEL 79
>gi|374705785|ref|ZP_09712655.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
S9]
Length = 231
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G IK + KG GFI P+ G P VF HIS + G PL GD+V Y I + +K + +
Sbjct: 5 GSIKSWNDEKGFGFIRPEQGGPEVFAHISAMRGDRRPLVGDKVLY----IASRDDKGR-I 59
Query: 121 HVEIVHLTPEVHLQWDSPS 139
E + L E+ L D PS
Sbjct: 60 RAEHLRLAGELSL--DQPS 76
>gi|146306295|ref|YP_001186760.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina ymp]
gi|421502627|ref|ZP_15949580.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
mendocina DLHK]
gi|145574496|gb|ABP84028.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
gi|400346611|gb|EJO94968.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
mendocina DLHK]
Length = 205
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 4 SPLPFENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKI 63
+PLP +PA+ +L L PS + + TE S + Q ETG +
Sbjct: 81 APLPSIGDQPAVWLTLLITSAAVLLQLAAQVRPSLPQSAQRSTEQSSGASSQESRETGTV 140
Query: 64 KEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
K F SKG GFI+ DSGE +FVH I EG V + G V++
Sbjct: 141 KWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRVLIEGQRVEF 183
>gi|390451875|ref|ZP_10237438.1| cold-shock DNA-binding protein family protein [Nitratireductor
aquibiodomus RA22]
gi|389660402|gb|EIM72088.1| cold-shock DNA-binding protein family protein [Nitratireductor
aquibiodomus RA22]
Length = 71
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
++G +K F ++KG+GFITPD+GE VFVHIS ++ + D K P K K
Sbjct: 3 QSGTVKFFNQAKGYGFITPDNGEKDVFVHISAVQASGLQGLEDGQKVTFETEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++E+
Sbjct: 63 KAVNLEV 69
>gi|407689793|ref|YP_006813378.1| hypothetical protein BN406_06634 [Sinorhizobium meliloti Rm41]
gi|407320968|emb|CCM69571.1| unnamed protein product [Sinorhizobium meliloti Rm41]
Length = 67
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F + KG+GFI+PD+G VFVH+S I+G + G +V Y + K K++A
Sbjct: 4 GTVKFFNQEKGYGFISPDNGGTDVFVHVSAIDGGSLLRDGQKVTYEIGQ-DRKTGKSRAE 62
Query: 121 HVEIV 125
+V V
Sbjct: 63 NVRTV 67
>gi|120602350|ref|YP_966750.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio
vulgaris DP4]
gi|120562579|gb|ABM28323.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris DP4]
Length = 201
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 43 RTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLP--G 100
+TR S R + GKI ++ +G GFI+PD G P VFVHIS + PLP G
Sbjct: 12 KTRGGGWSLRG--RMFDQGKIAQWNDERGFGFISPDDGSPRVFVHISAFRSRH-PLPEVG 68
Query: 101 DEVKYRLCPIPPK 113
+ V Y L P+ PK
Sbjct: 69 ERVLYYLGPLSPK 81
>gi|402492598|ref|ZP_10839358.1| cold-shock DNA-binding domain-containing protein [Rhizobium sp.
CCGE 510]
gi|401808469|gb|EJT00871.1| cold-shock DNA-binding domain-containing protein [Rhizobium sp.
CCGE 510]
Length = 67
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F KG GFITPD+G VFVH+S ++G G +V Y + K K+
Sbjct: 1 MATGTVKFFNGDKGFGFITPDNGGADVFVHVSSLQGGSFLSEGQKVSYEVGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V ++
Sbjct: 60 KAENVRLL 67
>gi|110634483|ref|YP_674691.1| cold-shock DNA-binding protein family protein [Chelativorans sp.
BNC1]
gi|110285467|gb|ABG63526.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 70
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+TG +K F +KG GFITPD+G+ VFVHIS +E G + G +V + + P
Sbjct: 3 QTGTVKFFNATKGFGFITPDNGQKDVFVHISAVEASGMRSLVDGQKVSFDVEP 55
>gi|359789693|ref|ZP_09292628.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359254371|gb|EHK57383.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 70
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
+TG +K F +KG GFITPD GE VFVHIS ++ +P D K P K K
Sbjct: 3 QTGTVKFFNHAKGFGFITPDDGEKDVFVHISAVQASGLPGLEDGQKVTFETEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++ I
Sbjct: 63 KAVNLSI 69
>gi|399993783|ref|YP_006574023.1| cold shock protein [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|400755298|ref|YP_006563666.1| cold shock protein [Phaeobacter gallaeciensis 2.10]
gi|398654451|gb|AFO88421.1| cold shock protein [Phaeobacter gallaeciensis 2.10]
gi|398658338|gb|AFO92304.1| cold shock protein [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 68
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG+GFI PD+G VFVHIS +E + D K P + +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDAGGSDVFVHISAVERSGLTGLADNQKVTYELQPGRDGRE 60
Query: 118 QAVHVEI 124
AV++E+
Sbjct: 61 SAVNIEL 67
>gi|420240841|ref|ZP_14745029.1| cold shock protein [Rhizobium sp. CF080]
gi|398074507|gb|EJL65650.1| cold shock protein [Rhizobium sp. CF080]
Length = 67
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F + KG GFITP++G VFVH+S ++G G +V Y L K K+
Sbjct: 1 MATGTVKFFNQDKGFGFITPENGGADVFVHVSALQGAGSLQDGQKVSYELGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V +
Sbjct: 60 KAENVRAI 67
>gi|13472379|ref|NP_103946.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|319781908|ref|YP_004141384.1| cold-shock protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|337266828|ref|YP_004610883.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|357026065|ref|ZP_09088173.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
gi|433773568|ref|YP_007304035.1| cold shock protein [Mesorhizobium australicum WSM2073]
gi|14023125|dbj|BAB49732.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
gi|317167796|gb|ADV11334.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|336027138|gb|AEH86789.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
gi|355542029|gb|EHH11197.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
gi|433665583|gb|AGB44659.1| cold shock protein [Mesorhizobium australicum WSM2073]
Length = 70
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+TG +K F +KG GFITPD G VFVHIS IE G + G +V + + P
Sbjct: 3 QTGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEP 55
>gi|312114304|ref|YP_004011900.1| cold-shock DNA-binding domain-containing protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311219433|gb|ADP70801.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 71
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKYRLCPIPPKFEK 116
+TG +K F ++KG GFITPD G VFVHIS +E V + G V Y P PK +
Sbjct: 3 QTGTVKFFNQAKGFGFITPDEGGKDVFVHISAVERSGVGMLDEGMRVTYETQP-DPKGKG 61
Query: 117 NQAVHVE 123
+AV++E
Sbjct: 62 PKAVNLE 68
>gi|418939945|ref|ZP_13493327.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
gi|375053340|gb|EHS49737.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
Length = 67
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F KG GFITPD+G P VFVH+S ++ GD+V + + K K+
Sbjct: 1 MATGTVKFFAEDKGFGFITPDNGGPDVFVHVSALQQGGSLRDGDKVSFEVGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A V ++
Sbjct: 60 KAESVSVL 67
>gi|418938798|ref|ZP_13492259.1| cold-shock DNA-binding domain protein, partial [Rhizobium sp.
PDO1-076]
gi|375054492|gb|EHS50839.1| cold-shock DNA-binding domain protein, partial [Rhizobium sp.
PDO1-076]
Length = 96
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKYRLCPIPPKFEKN 117
TGK+K F +KG+GFI PD G P VF+H++ + +P PG ++Y L +
Sbjct: 3 TGKLKWFDTAKGYGFIKPDDGSPDVFLHLNKVTDANLPTLQPGAPLRYTLG------RQG 56
Query: 118 QAVHVEIVHLTPE 130
V + + L P+
Sbjct: 57 NKVFAQDLSLVPD 69
>gi|407780130|ref|ZP_11127377.1| cold-shock DNA-binding protein family protein [Nitratireductor
pacificus pht-3B]
gi|407298128|gb|EKF17273.1| cold-shock DNA-binding protein family protein [Nitratireductor
pacificus pht-3B]
Length = 70
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG +K F +KG GFITPD G VFVHIS +E + D K P + K
Sbjct: 2 AQTGTVKFFNETKGFGFITPDDGAKDVFVHISALEASGIRTLADGQKVNFETEPDRMGKG 61
Query: 118 -QAVHVEIV 125
+AV++ +
Sbjct: 62 PKAVNLSLA 70
>gi|418296911|ref|ZP_12908753.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|355538009|gb|EHH07256.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
Length = 67
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F + KG GFITPDSG P VFVHIS + G +V Y + K K+
Sbjct: 1 MATGIVKFFAQDKGFGFITPDSGGPDVFVHISAVGFGGALQDGQKVSYDVGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V ++
Sbjct: 60 KAENVTVL 67
>gi|326386099|ref|ZP_08207723.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209324|gb|EGD60117.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 80
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPP 112
++P+ G +K F KG GFI PD G FVHIS +E G L VKY L
Sbjct: 10 KHPMAIGTVKFFNTDKGFGFIAPDEGGDDSFVHISAVERSGMRTLLKDQRVKYELE--TD 67
Query: 113 KFEKNQAVHVEIV 125
K K AV++EIV
Sbjct: 68 KRGKTAAVNLEIV 80
>gi|154247142|ref|YP_001418100.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154161227|gb|ABS68443.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 68
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F KG GFI D G P VFVHISD+E G Y G +V + +
Sbjct: 1 MATGTVKFFNSQKGFGFIQQDEGGPDVFVHISDVERSGLYGLNDGQKVSFDIVA 54
>gi|374332742|ref|YP_005082926.1| Cold-shock protein, DNA-binding domain-containing protein
[Pseudovibrio sp. FO-BEG1]
gi|359345530|gb|AEV38904.1| protein containing Cold-shock protein, DNA-binding domain
[Pseudovibrio sp. FO-BEG1]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP--- 109
+ P ++G +K F KG GFITPD GE VFVHIS +E G G + + P
Sbjct: 117 RGPRQSGTVKFFKLDKGFGFITPDEGENDVFVHISAVERSGLTTLDSGQRISFETEPDRR 176
Query: 110 ------IPPKFEKNQAVHVEIVHLTPEVHLQWDS 137
+ + E A E PE++ +DS
Sbjct: 177 GKGPKAVELRLEDGPAASSEDSQSQPEMNNDFDS 210
>gi|254470060|ref|ZP_05083464.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
gi|211960371|gb|EEA95567.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
Length = 215
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP--- 109
+ P ++G +K F KG GFITPD GE VFVHIS +E G G + + P
Sbjct: 118 RGPRQSGTVKFFKLDKGFGFITPDEGENDVFVHISAVERSGLTTLDSGQRISFETEPDRR 177
Query: 110 ------IPPKFEKNQAVHVEIVHLTPEVHLQWDS 137
+ + E A E PE++ +DS
Sbjct: 178 GKGPKAVELRLEDGPAASSEDSQSQPEMNNDFDS 211
>gi|223986942|ref|ZP_03636915.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
12042]
gi|223961089|gb|EEF65628.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
12042]
Length = 69
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIPPKFE 115
+ TGK+K F KG+GFIT D G+ +FVH S I G Y L G +V + + +
Sbjct: 1 MSTGKVKWFNGDKGYGFITDDQGQGDIFVHFSGINGNGYKSLEEGQKVSFEV-ENDARSN 59
Query: 116 KNQAVHVEIV 125
K++AV+V ++
Sbjct: 60 KSRAVNVTVL 69
>gi|17547875|ref|NP_521277.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|17430181|emb|CAD16944.1| probable cold shock-like cspc transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 67
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+I+G G++V+Y
Sbjct: 1 METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGEKVRY 50
>gi|392377626|ref|YP_004984785.1| cold shock protein, DNA binding [Azospirillum brasilense Sp245]
gi|356879107|emb|CCD00007.1| cold shock protein, DNA binding [Azospirillum brasilense Sp245]
Length = 68
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL-PGDEVKYRLCPIPPK 113
+ TG +K F +KG+GFI PD G VFVHIS +E + + G ++ Y L P K
Sbjct: 1 MATGTVKWFNTTKGYGFIQPDDGTADVFVHISAVERSGINIHEGQKLSYELQRDPKK 57
>gi|407770303|ref|ZP_11117673.1| cold-shock DNA-binding domain-containing protein [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407286581|gb|EKF12067.1| cold-shock DNA-binding domain-containing protein [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 69
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD G VF+HIS +E G P GD++ Y L
Sbjct: 1 MATGTVKWFNATKGFGFIQPDEGGNDVFLHISAVERAGMNHPQEGDKINYEL 52
>gi|407780129|ref|ZP_11127376.1| cold-shock DNA-binding protein family protein [Nitratireductor
pacificus pht-3B]
gi|407298127|gb|EKF17272.1| cold-shock DNA-binding protein family protein [Nitratireductor
pacificus pht-3B]
Length = 71
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
++G +K F SKG GFITPD+G VFVHIS ++ +P D K P K K
Sbjct: 3 QSGTVKFFNNSKGFGFITPDAGGADVFVHISAVQASGLPGLEDGQKVSFETEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++ I
Sbjct: 63 KAVNLTI 69
>gi|440224832|ref|YP_007338228.1| cold-shock protein CspA [Rhizobium tropici CIAT 899]
gi|440043704|gb|AGB75682.1| cold-shock protein CspA [Rhizobium tropici CIAT 899]
Length = 67
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
TG +K F KG GFITP+SG P VFVH+S ++ V G V Y L
Sbjct: 3 TGTVKFFNTDKGFGFITPESGGPDVFVHVSALQYGNVLREGQSVSYDL 50
>gi|402492111|ref|ZP_10838896.1| cold-shock DNA-binding domain-containing protein [Rhizobium sp.
CCGE 510]
gi|401809262|gb|EJT01639.1| cold-shock DNA-binding domain-containing protein [Rhizobium sp.
CCGE 510]
Length = 67
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F KG GFITPD+G VFVH+S ++G G V Y + K K+
Sbjct: 1 MATGTVKFFNGDKGFGFITPDNGGADVFVHVSALQGASNLSEGQTVSYDVGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V ++
Sbjct: 60 KAENVRVL 67
>gi|332716945|ref|YP_004444411.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
gi|418410372|ref|ZP_12983681.1| cold shock protein [Agrobacterium tumefaciens 5A]
gi|325063630|gb|ADY67320.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
gi|358003509|gb|EHJ95841.1| cold shock protein [Agrobacterium tumefaciens 5A]
Length = 67
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F + KG GFITPD+G P VFVHIS + G +V Y + K K+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDNGGPDVFVHISAVGFGGSLQDGQKVSYDVGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V ++
Sbjct: 60 KAENVSLI 67
>gi|323136224|ref|ZP_08071306.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322398298|gb|EFY00818.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 70
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F KG GFI PD+G VFVHIS +E G L G +V Y + + + K+
Sbjct: 3 TGTVKWFNSQKGFGFIQPDAGGADVFVHISAVERAGLRDLLEGQKVSYEVV-VDTRRGKS 61
Query: 118 QAVHVEI 124
A +++I
Sbjct: 62 SADNLQI 68
>gi|407775963|ref|ZP_11123254.1| cold-shock DNA-binding domain-containing protein [Thalassospira
profundimaris WP0211]
gi|407281035|gb|EKF06600.1| cold-shock DNA-binding domain-containing protein [Thalassospira
profundimaris WP0211]
Length = 69
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD G VF+HIS +E G P GD++ Y L
Sbjct: 1 MATGTVKWFNATKGFGFIQPDEGGNDVFLHISAVERAGMGHPQEGDKINYEL 52
>gi|429462880|ref|YP_007184343.1| cold shock protein [Candidatus Kinetoplastibacterium crithidii
(ex Angomonas deanei ATCC 30255)]
gi|451811373|ref|YP_007447828.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338394|gb|AFZ82817.1| cold shock protein [Candidatus Kinetoplastibacterium crithidii
(ex Angomonas deanei ATCC 30255)]
gi|451776531|gb|AGF47530.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 78
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
N +ETG +K F KG+GFI+P+SG +FVH S+I+G
Sbjct: 9 NMLETGVVKWFNTEKGYGFISPESGGKDLFVHFSEIQGS 47
>gi|23011600|ref|ZP_00051912.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 69
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
++TG +K F +KG+GFI PD+G VFVHIS +E G + G +V Y +
Sbjct: 1 MDTGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRNLVEGQKVSYEVLT 54
>gi|33598908|ref|NP_886551.1| cold shock-like protein [Bordetella parapertussis 12822]
gi|33603987|ref|NP_891547.1| cold shock-like protein [Bordetella bronchiseptica RB50]
gi|410422438|ref|YP_006902887.1| cold shock-like protein [Bordetella bronchiseptica MO149]
gi|410474984|ref|YP_006898265.1| cold shock-like protein [Bordetella parapertussis Bpp5]
gi|412340698|ref|YP_006969453.1| cold shock-like protein [Bordetella bronchiseptica 253]
gi|427816996|ref|ZP_18984060.1| putative cold shock-like protein [Bordetella bronchiseptica 1289]
gi|427817306|ref|ZP_18984369.1| putative cold shock-like protein [Bordetella bronchiseptica D445]
gi|427823040|ref|ZP_18990102.1| putative cold shock-like protein [Bordetella bronchiseptica Bbr77]
gi|33568963|emb|CAE35377.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
gi|33575038|emb|CAE39704.1| putative cold shock-like protein [Bordetella parapertussis]
gi|408445094|emb|CCJ51891.1| putative cold shock-like protein [Bordetella parapertussis Bpp5]
gi|408449733|emb|CCJ61425.1| putative cold shock-like protein [Bordetella bronchiseptica MO149]
gi|408770532|emb|CCJ55326.1| putative cold shock-like protein [Bordetella bronchiseptica 253]
gi|410567996|emb|CCN25569.1| putative cold shock-like protein [Bordetella bronchiseptica 1289]
gi|410568306|emb|CCN16339.1| putative cold shock-like protein [Bordetella bronchiseptica D445]
gi|410588305|emb|CCN03362.1| putative cold shock-like protein [Bordetella bronchiseptica Bbr77]
Length = 68
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG+GFITPDSG VF H S I+G Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGYGFITPDSGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
>gi|451812825|ref|YP_007449278.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|451778794|gb|AGF49674.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 84
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
N +ETG +K F KG+GFI P+SG +FVH S+I+G
Sbjct: 15 NMLETGVVKWFNAEKGYGFIAPESGGKDLFVHFSEIQGT 53
>gi|379335337|gb|AFD03320.1| cold shock protein CspE [uncultured bacterium W5-15b]
Length = 67
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLC 108
++ G IK F SKG+GFI P++GE VFVH S IEG Y L GD V++
Sbjct: 1 MQQGTIKWFNSSKGYGFIVPENGEKEVFVHYSVIEGEGYKSLNEGDTVQFEAA 53
>gi|359399246|ref|ZP_09192251.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium
pentaromativorans US6-1]
gi|357599452|gb|EHJ61165.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium
pentaromativorans US6-1]
Length = 131
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 45 RTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDE 102
+ E+ R L TG +K F KG GFIT D G+P FVHIS +E G GD
Sbjct: 49 KREAAPQRQLTGEKATGTVKFFNSMKGFGFITRDDGQPDAFVHISAVERSGLSALNEGDR 108
Query: 103 VKYRL 107
V++ +
Sbjct: 109 VEFDI 113
>gi|437999899|ref|YP_007183632.1| cold shock protein [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|429339133|gb|AFZ83555.1| cold shock protein [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
Length = 76
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
N +ETG +K F KG+GFI P+SG +FVH S+I+G
Sbjct: 7 NMLETGVVKWFNAEKGYGFIAPESGGKDLFVHFSEIQGT 45
>gi|150377524|ref|YP_001314119.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150032071|gb|ABR64186.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 68
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G P VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGFGFIQPDDGSPDVFVHISAVERAGLQDLKDGQKITYELV 53
>gi|357383313|ref|YP_004898037.1| cold-shock family protein [Pelagibacterium halotolerans B2]
gi|351591950|gb|AEQ50287.1| cold-shock family protein [Pelagibacterium halotolerans B2]
Length = 69
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TGK+K F +KG GFI PD G FVHIS +E G + G V Y L EK
Sbjct: 3 TGKVKFFNTTKGFGFIQPDQGGQDAFVHISAVERSGMSTLVEGQAVSYEL-------EKG 55
Query: 118 QAVHVEIVHLTP 129
+ V+L P
Sbjct: 56 RDGRASAVNLQP 67
>gi|359789694|ref|ZP_09292629.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359254372|gb|EHK57384.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 70
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
++G +K F +KG GFITPD G VFVHIS IE G + G +V + + P
Sbjct: 3 QSGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEP 55
>gi|425901136|ref|ZP_18877727.1| cold-shock DNA-binding domain protein [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397883012|gb|EJK99498.1| cold-shock DNA-binding domain protein [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 201
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 4 SPLPFENKKPALSSPMLSPQEP---HLHSNNTLSLPSPIITRRTRTESISNRALQNPVET 60
+P+P +PA+ +L+ HL + S PS T ++T +SNR +T
Sbjct: 84 APMPVIAGQPAVLFSLLTAAIAVLLHLAVSFYKSSPS---TNTSQTYDMSNR------DT 134
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
G +K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 135 GTVKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 180
>gi|299065287|emb|CBJ36455.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum CMR15]
Length = 67
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+I+G G +V+Y
Sbjct: 1 METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGQKVRY 50
>gi|451812098|ref|YP_007448552.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778000|gb|AGF48948.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 76
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
N +ETG +K F KG+GFI P+SG +FVH S+I+G
Sbjct: 7 NMLETGVVKWFNAEKGYGFIAPESGGKDLFVHFSEIQGT 45
>gi|389877497|ref|YP_006371062.1| cold-shock protein [Tistrella mobilis KA081020-065]
gi|388528281|gb|AFK53478.1| cold-shock DNA-binding domain protein [Tistrella mobilis
KA081020-065]
Length = 68
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFITPD+G VFVHIS +E
Sbjct: 3 TGTVKWFNSTKGYGFITPDTGGKDVFVHISAVE 35
>gi|223982871|ref|ZP_03633090.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
12042]
gi|223965156|gb|EEF69449.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
12042]
Length = 69
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPL-PGDEVKYRLCPIPPKFE 115
+ TGK+K F KG+GFI+ D+G+ +FVH S I G Y L G +V Y + +
Sbjct: 1 MNTGKVKWFNAEKGYGFISDDNGQGDIFVHFSGINGSGYKSLEEGQKVSYDV-ENDERSG 59
Query: 116 KNQAVHVEIV 125
K +AV+V ++
Sbjct: 60 KTRAVNVTVL 69
>gi|449145474|ref|ZP_21776279.1| cold-shock DNA-binding domain-containing protein [Vibrio mimicus
CAIM 602]
gi|449078815|gb|EMB49744.1| cold-shock DNA-binding domain-containing protein [Vibrio mimicus
CAIM 602]
Length = 70
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F SKG GFITPDSG VFVH + I +G G +V + +
Sbjct: 6 TGSVKWFNESKGFGFITPDSGSSDVFVHFNSIASDGFKTLFEGQKVSFSI 55
>gi|407782877|ref|ZP_11130085.1| cold shock protein [Oceanibaculum indicum P24]
gi|407204818|gb|EKE74798.1| cold shock protein [Oceanibaculum indicum P24]
Length = 68
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F R+KG+GFI PD G VFVHIS +E
Sbjct: 1 MSTGIVKWFNRTKGYGFIQPDEGGADVFVHISAVE 35
>gi|339021594|ref|ZP_08645603.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter tropicalis NBRC 101654]
gi|338751365|dbj|GAA08907.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter tropicalis NBRC 101654]
Length = 68
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PDSG FVHIS++E G + G +V Y L
Sbjct: 1 MATGTVKWFNPTKGFGFIQPDSGGQDAFVHISELERAGMHTLTEGQQVSYEL 52
>gi|319403835|emb|CBI77421.1| putative cold shock protein y4cH [Bartonella rochalimae ATCC
BAA-1498]
gi|319406844|emb|CBI80479.1| putative cold shock protein y4cH [Bartonella sp. 1-1C]
Length = 71
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG++K F +KG GFI PD+G +FVHISD++ + D K P + K
Sbjct: 2 AQTGEVKFFNNNKGFGFIKPDNGSTDIFVHISDVQASGLSGLNDAQKVSFDIEPDRRGKG 61
Query: 118 -QAVHVEIV 125
+A+++ ++
Sbjct: 62 PKAININVM 70
>gi|222109154|ref|YP_002551419.1| CspA-like protein [Agrobacterium vitis S4]
gi|221738428|gb|ACM39293.1| CspA-like protein [Agrobacterium vitis S4]
Length = 99
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKYRL 107
TGK+K F +KG+GFIT D G P VF+H+S + +P PG ++Y L
Sbjct: 3 TGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVL 52
>gi|319405275|emb|CBI78889.1| putative cold shock protein y4cH [Bartonella sp. AR 15-3]
Length = 71
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG++K F +KG GFI PD+G +FVHISD++ + D K P + K
Sbjct: 2 AQTGEVKFFNNNKGFGFIKPDNGSTDIFVHISDVQASGLTGLNDAQKVSFDIEPDRRGKG 61
Query: 118 -QAVHVEIV 125
+A+++ ++
Sbjct: 62 PKAININVM 70
>gi|451936348|ref|YP_007460202.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777271|gb|AGF48246.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 75
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
N +ETG +K F KG+GFI P+SG +FVH S+I+G
Sbjct: 7 NMLETGVVKWFNAEKGYGFIAPESGGKDLFVHFSEIQGT 45
>gi|73538776|ref|YP_299143.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72122113|gb|AAZ64299.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 67
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKYRLCPIPPKFE 115
+ETG +K F +KG GFITPD+G +F H S IEG + L G +V+Y + + K E
Sbjct: 1 METGTVKWFNDAKGFGFITPDAGGNDLFAHFSAIEGAGFKSLKEGQKVRY-VKAMGQKGE 59
Query: 116 KNQAVHVEIV 125
QA ++ V
Sbjct: 60 --QATKIQAV 67
>gi|357026066|ref|ZP_09088174.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
gi|355542030|gb|EHH11198.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
Length = 70
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
+TG +K F +KG GFITPD G VFVHIS ++ +P D K P K K
Sbjct: 3 QTGTVKFFNHAKGFGFITPDDGAKDVFVHISAVQASGLPGLEDGQKVTFDTEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++ I
Sbjct: 63 KAVNLSI 69
>gi|86139243|ref|ZP_01057813.1| cold shock family protein [Roseobacter sp. MED193]
gi|85824087|gb|EAQ44292.1| cold shock family protein [Roseobacter sp. MED193]
Length = 120
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG GFI PD G VFVHIS +E + D K P + +
Sbjct: 53 MATGTVKWFNSTKGFGFIAPDGGTKDVFVHISAVERSGLTGLADNQKVTFDIEPGRDGRE 112
Query: 118 QAVHVEIV 125
AV++ +V
Sbjct: 113 AAVNLALV 120
>gi|163850319|ref|YP_001638362.1| DNA-binding cold-shock protein [Methylobacterium extorquens PA1]
gi|218528876|ref|YP_002419692.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
extorquens CM4]
gi|240137390|ref|YP_002961861.1| major cold shock protein [Methylobacterium extorquens AM1]
gi|254559570|ref|YP_003066665.1| major cold shock protein [Methylobacterium extorquens DM4]
gi|418059056|ref|ZP_12697015.1| cold-shock DNA-binding domain protein [Methylobacterium extorquens
DSM 13060]
gi|163661924|gb|ABY29291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218521179|gb|ACK81764.1| cold-shock DNA-binding domain protein [Methylobacterium extorquens
CM4]
gi|240007358|gb|ACS38584.1| major cold shock protein [Methylobacterium extorquens AM1]
gi|254266848|emb|CAX22647.1| major cold shock protein [Methylobacterium extorquens DM4]
gi|373567398|gb|EHP93368.1| cold-shock DNA-binding domain protein [Methylobacterium extorquens
DSM 13060]
Length = 69
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
++TG +K F +KG+GFI PD G VFVHIS +E G + G +V Y +
Sbjct: 1 MDTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRNLVEGQKVSYEVLT 54
>gi|188580080|ref|YP_001923525.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
populi BJ001]
gi|179343578|gb|ACB78990.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 69
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
++TG +K F +KG+GFI PD+G VFVHIS +E G + G ++ Y +
Sbjct: 1 MDTGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRNLVEGQKISYEVLT 54
>gi|408788352|ref|ZP_11200073.1| cold shock protein [Rhizobium lupini HPC(L)]
gi|417858472|ref|ZP_12503529.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|418299115|ref|ZP_12910950.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|424909054|ref|ZP_18332431.1| cold shock protein [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|338824476|gb|EGP58443.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|355535409|gb|EHH04697.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|392845085|gb|EJA97607.1| cold shock protein [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|408485941|gb|EKJ94274.1| cold shock protein [Rhizobium lupini HPC(L)]
Length = 69
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGLTALNDGQKLSYELM 53
>gi|187479893|ref|YP_787918.1| cold shock protein [Bordetella avium 197N]
gi|115424480|emb|CAJ51034.1| cold shock protein [Bordetella avium 197N]
Length = 68
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG+GFITPDSG VF H S I+G Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGYGFITPDSGGTDVFAHFSAIQGRGYRSLNEGQEVEFDVKDGP 57
>gi|389877496|ref|YP_006371061.1| cold-shock DNA-binding domain-containing protein [Tistrella mobilis
KA081020-065]
gi|388528280|gb|AFK53477.1| cold-shock DNA-binding domain-containing protein [Tistrella mobilis
KA081020-065]
Length = 68
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFITPD G VFVHIS +E G G ++Y L
Sbjct: 1 MATGTVKWFNSTKGYGFITPDEGGKDVFVHISAVERAGLSTLNEGQRLEYSLL 53
>gi|409441423|ref|ZP_11268391.1| putative cold shock protein y4cH (modular protein) [Rhizobium
mesoamericanum STM3625]
gi|408747019|emb|CCM79594.1| putative cold shock protein y4cH (modular protein) [Rhizobium
mesoamericanum STM3625]
Length = 89
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
TGK+K F KG GFITP+SG VFVH+S ++ V G V Y L
Sbjct: 25 TGKVKFFNADKGFGFITPESGGTDVFVHVSALQYGDVLREGQSVSYDL 72
>gi|374367187|ref|ZP_09625254.1| cold-shock DNA-binding domain containing protein [Cupriavidus
basilensis OR16]
gi|373101195|gb|EHP42249.1| cold-shock DNA-binding domain containing protein [Cupriavidus
basilensis OR16]
Length = 65
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDE-VKYR 106
+ETG +K F KG GFITPD+G +FVHIS + G PL ++ V+Y+
Sbjct: 1 METGTVKFFNAQKGFGFITPDAGGKDLFVHISQVRGG-APLQDNQRVQYQ 49
>gi|328542846|ref|YP_004302955.1| cold shock-like transcription regulator protein [Polymorphum gilvum
SL003B-26A1]
gi|326412592|gb|ADZ69655.1| Putative cold shock-like transcription regulator protein
[Polymorphum gilvum SL003B-26A1]
Length = 250
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ P ++G +K F KG GFITPD+GE VFVHIS +E
Sbjct: 163 RGPRQSGTVKFFKSDKGFGFITPDNGEADVFVHISAVE 200
>gi|451822955|ref|YP_007459229.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775755|gb|AGF46796.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 78
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
N +ETG +K F KG+GFI+P+SG +FVH S+I+G
Sbjct: 9 NMLETGVVKWFNTEKGYGFISPESGGKDLFVHFSEIQG 46
>gi|383648299|ref|ZP_09958705.1| cold shock protein, partial [Sphingomonas elodea ATCC 31461]
Length = 144
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKYRLC 108
R L TG +K F KG GFI D G+P FVHIS +E +P GD +++ L
Sbjct: 69 QRQLTGEKATGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGMPTLNEGDRLEFEL- 127
Query: 109 PIPPKFEKNQAVHVEIVHLTPE 130
E ++ V+LTP+
Sbjct: 128 ------EVDRRGKYAAVNLTPQ 143
>gi|350552694|ref|ZP_08921889.1| cold-shock DNA-binding domain protein [Thiorhodospira sibirica
ATCC 700588]
gi|349793159|gb|EGZ46998.1| cold-shock DNA-binding domain protein [Thiorhodospira sibirica
ATCC 700588]
Length = 67
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
TG +K F SKG GFITPD G VFVH S IEG
Sbjct: 3 TGTVKWFNESKGFGFITPDDGGKDVFVHFSAIEGS 37
>gi|298290653|ref|YP_003692592.1| cold-shock DNA-binding domain-containing protein [Starkeya novella
DSM 506]
gi|296927164|gb|ADH87973.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 69
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F KG+GFI PD+G VFVHIS +E G G +V Y +
Sbjct: 1 MATGTVKWFNSQKGYGFIQPDAGSSDVFVHISAVERAGLSTLNEGQKVSYEV 52
>gi|312115790|ref|YP_004013386.1| cold-shock DNA-binding domain-containing protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311220919|gb|ADP72287.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 69
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI PDSG VFVHIS +E G + G ++ + +
Sbjct: 1 MNTGTVKFFNVNKGYGFIQPDSGSADVFVHISAVERAGMRTIVEGQKLSFEIV 53
>gi|159184158|ref|NP_353140.2| cold shock protein [Agrobacterium fabrum str. C58]
gi|335032835|ref|ZP_08526207.1| cold shock protein [Agrobacterium sp. ATCC 31749]
gi|159139492|gb|AAK85925.2| cold shock protein [Agrobacterium fabrum str. C58]
gi|333795511|gb|EGL66836.1| cold shock protein [Agrobacterium sp. ATCC 31749]
Length = 69
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGLTALNDGQKLSYELM 53
>gi|378764132|ref|YP_005192748.1| probable cold shock protein y4cH [Sinorhizobium fredii HH103]
gi|365183760|emb|CCF00609.1| probable cold shock protein y4cH [Sinorhizobium fredii HH103]
Length = 67
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
+ TGK+K F KG GFITPD+G VFVH+S ++ V G V Y +
Sbjct: 1 MATGKVKFFNADKGFGFITPDTGGTDVFVHVSALQYGDVLREGQTVSYDI 50
>gi|194292370|ref|YP_002008277.1| cold shock transcription antiterminator [Cupriavidus taiwanensis
LMG 19424]
gi|193226274|emb|CAQ72223.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Cupriavidus taiwanensis LMG
19424]
Length = 67
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+I+G G +V+Y
Sbjct: 1 METGTVKWFNDSKGFGFITPDAGGNDLFAHFSEIQGSGFKSLAEGQKVRY 50
>gi|332526824|ref|ZP_08402924.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
gi|332111225|gb|EGJ11257.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
Length = 69
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
ETG +K F SKG+GFITPD+G +F H +I+G
Sbjct: 3 TETGTVKWFNESKGYGFITPDAGGKDLFAHFKEIQGT 39
>gi|399066410|ref|ZP_10748428.1| cold shock protein [Novosphingobium sp. AP12]
gi|398028263|gb|EJL21780.1| cold shock protein [Novosphingobium sp. AP12]
Length = 272
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S LS+ +I R + R L TG +K F KG GFIT D G+P FVHI
Sbjct: 174 SATDLSVVGDVIPVAKREPAAPQRELTGEKATGTVKFFNSMKGFGFITRDDGQPDAFVHI 233
Query: 89 SDIE--GCYVPLPGDEVKYRL 107
S +E G GD V++ +
Sbjct: 234 SAVERSGLSGLNEGDRVEFDI 254
>gi|94314090|ref|YP_587299.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
metallidurans CH34]
gi|93357942|gb|ABF12030.1| cold-shock DNA-binding domain protein [Cupriavidus metallidurans
CH34]
Length = 126
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 43 RTRTESISNRA--LQN-PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
R + +IS R L+N +ETG +K F SKG GFITPD+G +F H S+++G
Sbjct: 42 RHASSAISARREFLRNFYMETGTVKWFNDSKGFGFITPDAGGDDLFAHFSEVQG 95
>gi|407973830|ref|ZP_11154741.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
gi|407430890|gb|EKF43563.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
Length = 70
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+TG +K F +KG GFITPD G VFVHIS +E G G +V + + P
Sbjct: 3 QTGTVKFFNTTKGFGFITPDDGAKDVFVHISAVERSGMTTLNDGQKVSFDVEP 55
>gi|319781907|ref|YP_004141383.1| cold-shock protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167795|gb|ADV11333.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 70
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
+TG +K F +KG GFITPD G VFVHIS ++ +P D K P K K
Sbjct: 3 QTGTVKFFNHAKGFGFITPDDGAKDVFVHISAVQASGLPGLEDGQKVSFDTEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++ +
Sbjct: 63 KAVNLSV 69
>gi|110634484|ref|YP_674692.1| cold-shock DNA-binding protein family protein [Chelativorans sp.
BNC1]
gi|110285468|gb|ABG63527.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 70
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
++G +K F +KG GFITPD G+ VFVHIS ++ +P D K P K K
Sbjct: 3 QSGTVKFFNHAKGFGFITPDDGQKDVFVHISAVQASGLPGLEDGQKVTFDTEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++ I
Sbjct: 63 KAVNLTI 69
>gi|13472380|ref|NP_103947.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|337266827|ref|YP_004610882.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|433773567|ref|YP_007304034.1| cold shock protein [Mesorhizobium australicum WSM2073]
gi|14023126|dbj|BAB49733.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
gi|336027137|gb|AEH86788.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
gi|433665582|gb|AGB44658.1| cold shock protein [Mesorhizobium australicum WSM2073]
Length = 70
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
+TG +K F +KG GFITPD G VFVHIS ++ +P D K P K K
Sbjct: 3 QTGTVKFFNHAKGFGFITPDDGAKDVFVHISAVQASGLPGLEDGQKVTFDTEPDKRGKGP 62
Query: 118 QAVHVEI 124
+AV++ +
Sbjct: 63 KAVNLSV 69
>gi|163859299|ref|YP_001633597.1| cold shock protein [Bordetella petrii DSM 12804]
gi|163263027|emb|CAP45330.1| cold shock protein [Bordetella petrii]
Length = 68
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
V+ GK+K F KG GFITPD+G VF H S I+G Y L G EV++ + P
Sbjct: 2 VQKGKVKWFNADKGFGFITPDAGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
>gi|114704723|ref|ZP_01437631.1| cold shock protein [Fulvimarina pelagi HTCC2506]
gi|114539508|gb|EAU42628.1| cold shock protein [Fulvimarina pelagi HTCC2506]
Length = 70
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
+TG IK F SKG GF+TP+ G VF+HIS +E G GD++ + P P+ +
Sbjct: 3 QTGTIKFFNESKGFGFVTPEGGSKDVFLHISALERSGISSVQEGDKITFDTEP-DPRGKG 61
Query: 117 NQAVHVEIV 125
+AV++++
Sbjct: 62 PKAVNIQLA 70
>gi|39936734|ref|NP_949010.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris CGA009]
gi|316933046|ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|39650590|emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009]
gi|315600760|gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 84
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
PV G +K F +KG+GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 14 PVSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVA 68
>gi|406838438|ref|ZP_11098032.1| cold shock protein [Lactobacillus vini DSM 20605]
Length = 73
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 60 TGKIKEFCRSKGHGFITPDSG-EPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
TGK+ F +++G+GFITPD A+FVH S I+ G PG +VK+ + K
Sbjct: 3 TGKVNSFNQARGYGFITPDDDPAAAIFVHFSAIQTTGFKTLQPGQQVKFLIAA-----GK 57
Query: 117 N--QAVHVEIVHL 127
N QAV+V + L
Sbjct: 58 NGQQAVNVLVDDL 70
>gi|452126748|ref|ZP_21939331.1| cold shock protein [Bordetella holmesii F627]
gi|452130123|ref|ZP_21942696.1| cold shock protein [Bordetella holmesii H558]
gi|451921843|gb|EMD71988.1| cold shock protein [Bordetella holmesii F627]
gi|451922983|gb|EMD73127.1| cold shock protein [Bordetella holmesii H558]
Length = 63
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG+GFITPD+G VF H S I+G Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGYGFITPDAGGTEVFAHFSAIQGRGYRSLNEGQEVEFDVKDGP 57
>gi|114571412|ref|YP_758092.1| cold-shock DNA-binding protein family protein [Maricaulis maris
MCS10]
gi|114341874|gb|ABI67154.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
Length = 70
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +SKG GFITPD G VFVHIS ++ +P D K P + K
Sbjct: 1 MSTGVVKFFNQSKGFGFITPDEGGDDVFVHISAVQASGLPGLSDGQKVSFETEPDRRGKG 60
Query: 118 -QAVHVEIV 125
+AV +++
Sbjct: 61 PKAVDLQLA 69
>gi|433773636|ref|YP_007304103.1| cold shock protein [Mesorhizobium australicum WSM2073]
gi|433665651|gb|AGB44727.1| cold shock protein [Mesorhizobium australicum WSM2073]
Length = 70
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PDSG VFVHIS +E G + G ++ + +
Sbjct: 1 MATGTVKWFNATKGFGFIQPDSGGADVFVHISAVERAGLSTLVEGQKINFEI 52
>gi|422323384|ref|ZP_16404423.1| cold shock protein [Achromobacter xylosoxidans C54]
gi|423014848|ref|ZP_17005569.1| putative cold shock-like protein [Achromobacter xylosoxidans AXX-A]
gi|317401626|gb|EFV82252.1| cold shock protein [Achromobacter xylosoxidans C54]
gi|338782098|gb|EGP46475.1| putative cold shock-like protein [Achromobacter xylosoxidans AXX-A]
Length = 68
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG+GFITPD+G VF H S I+G Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGYGFITPDAGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
>gi|405382246|ref|ZP_11036067.1| cold shock protein [Rhizobium sp. CF142]
gi|397321309|gb|EJJ25726.1| cold shock protein [Rhizobium sp. CF142]
Length = 69
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ Y+L
Sbjct: 3 TGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMGSIVEGQKLGYQL 52
>gi|220921802|ref|YP_002497103.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219946408|gb|ACL56800.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 69
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F KG+GFI PD G VFVHIS +E G + G ++ Y L
Sbjct: 1 MNTGTVKWFNDQKGYGFIQPDDGGKDVFVHISAVERAGLRGLVEGQKISYEL 52
>gi|397686919|ref|YP_006524238.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 10701]
gi|395808475|gb|AFN77880.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 10701]
Length = 229
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G+++ + KG GFI P+ G VF HIS + G P+ GD V Y E ++A
Sbjct: 5 GQLRSWDDQKGFGFIRPERGGGDVFAHISAMRGARRPVQGDRVLY-------LSEADKAG 57
Query: 121 HVEIVHLTPEVHLQWDSPS 139
+ H+ + L D P+
Sbjct: 58 RLRATHIRLDAPLSLDEPA 76
>gi|333984686|ref|YP_004513896.1| cold-shock DNA-binding domain-containing protein [Methylomonas
methanica MC09]
gi|333808727|gb|AEG01397.1| cold-shock DNA-binding domain protein [Methylomonas methanica MC09]
Length = 109
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLPGDEVKYRLCP-IP 111
+ ++ G +K + +G GFI PD+G+ +FVHIS +G P+ GD + Y++
Sbjct: 1 MAETLQRGVLKTWKDDRGFGFIQPDNGDKDIFVHISAFKGMARRPVRGDVLFYQVSQEAG 60
Query: 112 PKFEKNQAV--HVEIVHLTPEVHLQW 135
KF+ A VE+V +P++ +W
Sbjct: 61 GKFKAVDARIDGVELVAASPKLSKKW 86
>gi|430005984|emb|CCF21787.1| Cold shock protein, DNA binding [Rhizobium sp.]
Length = 69
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGYGFIQPDDGSADVFVHISAVERAGMSSLNDGQKLSYELVT 54
>gi|170743586|ref|YP_001772241.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. 4-46]
gi|168197860|gb|ACA19807.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 69
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F KG+GFI PD G VFVHIS +E G G +V Y L
Sbjct: 1 MNTGTVKWFNDQKGYGFIQPDDGGKDVFVHISAVERAGLRGLAEGQKVSYEL 52
>gi|94313078|ref|YP_586287.1| cold-shock DNA-binding domain-containing protein, anti-terminator
of transcription [Cupriavidus metallidurans CH34]
gi|430809755|ref|ZP_19436870.1| cold-shock DNA-binding domain-containing protein, anti-terminator
of transcription [Cupriavidus sp. HMR-1]
gi|93356930|gb|ABF11018.1| cold-shock DNA-binding domain protein, anti-terminator of
transcription [Cupriavidus metallidurans CH34]
gi|429497826|gb|EKZ96348.1| cold-shock DNA-binding domain-containing protein, anti-terminator
of transcription [Cupriavidus sp. HMR-1]
Length = 67
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ETG +K F +KG GFITPD+G +F H S IEG + L G +V+Y
Sbjct: 1 METGTVKWFNDAKGFGFITPDAGGNDLFAHFSAIEGNGFKSLKEGQKVRY 50
>gi|332286174|ref|YP_004418085.1| cold shock-like protein [Pusillimonas sp. T7-7]
gi|330430127|gb|AEC21461.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
Length = 68
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG GFITPD+G VF H S IEG Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGFGFITPDAGGTDVFAHFSAIEGRGYRSLNEGQEVEFEVKDGP 57
>gi|27375170|ref|NP_766699.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27348306|dbj|BAC45324.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 77
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
N V G +K F +KG+GFI PD G VFVHIS +E G + G +V Y L
Sbjct: 8 NDVALGTVKWFNPTKGYGFIAPDDGGNDVFVHISAVEKAGYTSLVEGAKVSYELV 62
>gi|77460636|ref|YP_350143.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
gi|77384639|gb|ABA76152.1| putative cold shock protein [Pseudomonas fluorescens Pf0-1]
Length = 200
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 4 SPLPFENKKPA-LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+P+P +PA L S +++ LH + SP T++ +SNR +TG
Sbjct: 84 APMPVIAGQPAVLFSLVIALVAVVLHLAVSFYKSSP--AAATQSYDMSNR------DTGT 135
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
+K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 136 VKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 179
>gi|73539008|ref|YP_299375.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|116695865|ref|YP_841441.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|300694434|ref|YP_003750407.1| cold shock/stress protein, member of the csp-family [Ralstonia
solanacearum PSI07]
gi|339323183|ref|YP_004682077.1| hypothetical protein CNE_2c18890 [Cupriavidus necator N-1]
gi|72122345|gb|AAZ64531.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
gi|113530364|emb|CAJ96711.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|299076471|emb|CBJ35788.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum PSI07]
gi|338169792|gb|AEI80846.1| cold shock-like protein CspA [Cupriavidus necator N-1]
gi|344170089|emb|CCA82477.1| cold shock/stress protein, member of the Csp-family [blood disease
bacterium R229]
Length = 67
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+I+G + L G +V+Y
Sbjct: 1 METGTVKWFNDSKGFGFITPDAGGNDLFAHFSEIQGNGFKSLQEGQKVRY 50
>gi|170751748|ref|YP_001758008.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170658270|gb|ACB27325.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG+GFI PD G VFVHIS +E G + G + Y +
Sbjct: 1 MNTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQRIAYEILT 54
>gi|421506112|ref|ZP_15953044.1| hypothetical protein A471_22658 [Pseudomonas mendocina DLHK]
gi|400343139|gb|EJO91517.1| hypothetical protein A471_22658 [Pseudomonas mendocina DLHK]
Length = 240
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G+++ + +KG GFI P G VF HIS + G P PGDEV +
Sbjct: 8 GRLRSWDDAKGFGFIQPQDGGAEVFAHISAMRGDRRPQPGDEVLF 52
>gi|383771845|ref|YP_005450910.1| cold-shock DNA-binding domain-containing protein [Bradyrhizobium
sp. S23321]
gi|381359968|dbj|BAL76798.1| cold-shock DNA-binding domain-containing protein [Bradyrhizobium
sp. S23321]
Length = 74
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
V TG +K F +KG+GFI PD+G VFVHIS +E
Sbjct: 7 DVATGTVKWFNATKGYGFIQPDNGGKDVFVHISAVE 42
>gi|229528227|ref|ZP_04417618.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
gi|229334589|gb|EEO00075.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
Length = 72
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F SKG GFITPDSG VFVH + I G G +V + +
Sbjct: 8 TGSVKWFNESKGFGFITPDSGGSDVFVHFNSITSGGVKTLFEGQKVNFSI 57
>gi|152986409|ref|YP_001348696.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
gi|150961567|gb|ABR83592.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
Length = 238
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 47 ESISNRA-LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+SIS R ++ P G I + KG GFI P +G +F+HIS G PL GD+V +
Sbjct: 4 DSISERGHMEKP---GMISRWYDDKGFGFIQPKAGGEEIFLHISAFRGDRRPLQGDQVWF 60
>gi|334142900|ref|YP_004536108.1| CspA family cold shock protein [Novosphingobium sp. PP1Y]
gi|333940932|emb|CCA94290.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium sp.
PP1Y]
Length = 164
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L TG +K F KG GFIT D G+P FVHIS +E G GD V++ +
Sbjct: 88 QRQLTGEKATGTVKFFNSMKGFGFITRDDGQPDAFVHISAVERSGLSALNEGDRVEFDI 146
>gi|374263433|ref|ZP_09621981.1| hypothetical protein LDG_8431 [Legionella drancourtii LLAP12]
gi|363536023|gb|EHL29469.1| hypothetical protein LDG_8431 [Legionella drancourtii LLAP12]
Length = 72
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
G +K F + KG+GFITPD+GE VFVH S++
Sbjct: 6 GTVKRFNKIKGYGFITPDTGESEVFVHFSEV 36
>gi|345876867|ref|ZP_08828628.1| ribosomal large subunit pseudouridine synthase E [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344226067|gb|EGV52409.1| ribosomal large subunit pseudouridine synthase E [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 87
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKF 114
+ TG +K F +KG+GF+TPD G+ +FVH S I EG G +V++ + P
Sbjct: 18 DMSTGVVKWFNNAKGYGFVTPDDGDVDIFVHFSSITMEGYKTLKEGQKVEFEINQGPKGL 77
Query: 115 EKNQAVHV 122
HV
Sbjct: 78 HAVNIQHV 85
>gi|337269577|ref|YP_004613632.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|336029887|gb|AEH89538.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 69
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G + G +V Y +
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMRDIVEGQKVGYEMV 53
>gi|427428008|ref|ZP_18918050.1| Cold shock protein CspA [Caenispirillum salinarum AK4]
gi|425882709|gb|EKV31388.1| Cold shock protein CspA [Caenispirillum salinarum AK4]
Length = 68
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG+GFITPD G FVHIS +E G G V Y L
Sbjct: 1 MATGTVKWFDSTKGYGFITPDEGGQDAFVHISAVERAGLDTLKDGQRVSYDL 52
>gi|426401499|ref|YP_007020471.1| DNA-binding domain-containing protein [Candidatus Endolissoclinum
patella L2]
gi|425858167|gb|AFX99203.1| 'Cold-shock' DNA-binding domain protein [Candidatus Endolissoclinum
patella L2]
Length = 75
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
+ TG +K F +KG+GFI P+ G VFVHIS +E G + G ++ Y L P +
Sbjct: 7 MATGTVKWFNTTKGYGFIQPEDGGADVFVHISAVEQSGMHSLNEGQKISYELQSDPRR 64
>gi|163850615|ref|YP_001638658.1| DNA-binding cold-shock protein [Methylobacterium extorquens PA1]
gi|218529339|ref|YP_002420155.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
extorquens CM4]
gi|240137664|ref|YP_002962135.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
AM1]
gi|254560234|ref|YP_003067329.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
DM4]
gi|163662220|gb|ABY29587.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218521642|gb|ACK82227.1| cold-shock DNA-binding domain protein [Methylobacterium extorquens
CM4]
gi|240007632|gb|ACS38858.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
AM1]
gi|254267512|emb|CAX23354.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
DM4]
Length = 69
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG+GFI PD+G VFVHIS +E G G +V Y + I K K
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRDLAEGQKVTYEV-EIDRKSGKE 61
Query: 118 QAVHVEI 124
A +++
Sbjct: 62 SAGQLQV 68
>gi|398354263|ref|YP_006399727.1| cold shock protein y4cH [Sinorhizobium fredii USDA 257]
gi|390129589|gb|AFL52970.1| putative cold shock protein y4cH [Sinorhizobium fredii USDA 257]
Length = 69
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVHIS +E G G +V Y L
Sbjct: 1 MASGTVKWFNSTKGFGFIQPDDGAADVFVHISAVERAGLSTLKDGQKVSYELA 53
>gi|218677799|ref|ZP_03525696.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
Length = 69
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MSTGTVKWFNATKGYGFIQPDDGAADVFVHISAVERAGMRDLKDGQKLSYELV 53
>gi|334318734|ref|YP_004551293.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|334099161|gb|AEG57170.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
Length = 67
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
+ TGK+K F KG GFITPD G VFVH+S ++ V G V Y L
Sbjct: 1 MATGKVKFFNADKGFGFITPDPGGADVFVHVSALQYGDVLREGQTVSYDL 50
>gi|146307203|ref|YP_001187668.1| hypothetical protein Pmen_2176 [Pseudomonas mendocina ymp]
gi|145575404|gb|ABP84936.1| protein of unknown function DUF1294 [Pseudomonas mendocina ymp]
Length = 240
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G+++ + +KG GFI P G VF HIS + G P PGDEV +
Sbjct: 8 GRLRSWDDAKGFGFIQPQDGGAEVFAHISAMRGDRRPQPGDEVLF 52
>gi|92118346|ref|YP_578075.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91801240|gb|ABE63615.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 73
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
V TG +K F +KG GFI PDSG VFVHIS +E G G +V Y +
Sbjct: 7 VATGTVKWFNATKGFGFIQPDSGGKDVFVHISAVERAGLSSLNEGAKVSYEVVA 60
>gi|333900784|ref|YP_004474657.1| cold-shock DNA-binding domain-containing protein [Pseudomonas fulva
12-X]
gi|333116049|gb|AEF22563.1| cold-shock DNA-binding domain protein [Pseudomonas fulva 12-X]
Length = 237
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPK 113
+Q+ + G+IK + KG GFI P +G VF HIS + G P GD+V + + +
Sbjct: 1 MQSREQAGRIKRWDDDKGFGFIQPIAGGTDVFAHISAMRGDRRPSAGDQVLF----VAGR 56
Query: 114 FEKNQAVHVEIVHLTPEVHL 133
+K + + E V L E+ +
Sbjct: 57 DDKGR-LRAEHVRLAGELAI 75
>gi|295696558|ref|YP_003589796.1| cold-shock DNA-binding domain-containing protein [Kyrpidia tusciae
DSM 2912]
gi|295412160|gb|ADG06652.1| cold-shock DNA-binding domain protein [Kyrpidia tusciae DSM 2912]
Length = 66
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
GK+K F KG+GFITPD G VFVH S I EG G +V+Y + P
Sbjct: 3 GKVKWFNAEKGYGFITPDDGGKDVFVHYSAIQEEGFRTLEEGQDVEYDIVEGP 55
>gi|308805262|ref|XP_003079943.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
gi|116058400|emb|CAL53589.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
Length = 125
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--------EGCYVPLPGDEVKYRLCPIPP 112
GK+K F +KG G+ITPD GEP VFVH S + +G GD V++ + P
Sbjct: 13 GKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESP 72
Query: 113 KFEKNQAVHVEIVHLTP 129
E+ +AV V + P
Sbjct: 73 TDERLKAVCVTGIGGAP 89
>gi|402774203|ref|YP_006593740.1| cold-shock DNA-binding domain-containing protein [Methylocystis sp.
SC2]
gi|401776223|emb|CCJ09089.1| Cold-shock DNA-binding domain protein [Methylocystis sp. SC2]
Length = 70
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K F KG GFI P+SG P VFVHIS +E G G ++ Y + I +
Sbjct: 1 MQTGIVKWFNAQKGFGFIQPESGGPDVFVHISAVERAGLMGLAEGQKLNYEIA-IDRRSG 59
Query: 116 KNQAVHVEI 124
K+ A +++
Sbjct: 60 KSSADQLQV 68
>gi|418060237|ref|ZP_12698158.1| cold-shock DNA-binding domain protein [Methylobacterium extorquens
DSM 13060]
gi|373566214|gb|EHP92222.1| cold-shock DNA-binding domain protein [Methylobacterium extorquens
DSM 13060]
Length = 196
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG+GFI PD+G VFVHIS +E G G +V Y + I K
Sbjct: 128 MATGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRDLAEGQKVTYEV-EIDRKSG 186
Query: 116 KNQAVHVEIV 125
K A +++
Sbjct: 187 KESAGQLQVA 196
>gi|402851067|ref|ZP_10899244.1| Cold shock protein CspA [Rhodovulum sp. PH10]
gi|402498649|gb|EJW10384.1| Cold shock protein CspA [Rhodovulum sp. PH10]
Length = 69
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MSTGTVKWFNNQKGYGFIQPDDGGKDVFVHISAVERAGMSTLREGQKLDYELT 53
>gi|374366557|ref|ZP_09624635.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
basilensis OR16]
gi|373101922|gb|EHP42965.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
basilensis OR16]
Length = 67
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+I+G G +V+Y
Sbjct: 1 METGTVKWFNDSKGFGFITPDAGGNDLFAHFSEIQGGGFKSLQEGQKVRY 50
>gi|374287717|ref|YP_005034802.1| cold shock-like protein [Bacteriovorax marinus SJ]
gi|301166258|emb|CBW25833.1| cold shock-like protein [Bacteriovorax marinus SJ]
Length = 64
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL-PGDEVKYRL 107
+ETGK+K F + KG GFITP++G +FVHI+ I+ PL GD V+Y +
Sbjct: 1 METGKVKFFDQEKGFGFITPENGGKDIFVHITGIQSG--PLNEGDTVEYEV 49
>gi|378827898|ref|YP_005190630.1| Cold shock-like protein CspA [Sinorhizobium fredii HH103]
gi|365180950|emb|CCE97805.1| Cold shock-like protein CspA [Sinorhizobium fredii HH103]
gi|401022228|gb|AFP89742.1| putative cold shock-like protein CspA [Sinorhizobium meliloti]
Length = 85
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 46 TESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEV 103
+ SI+N + TG +K F +KG GFI PD+G FVHIS +E G + G ++
Sbjct: 5 SRSITNATKGFIMTTGTVKWFNSTKGFGFIEPDNGGADAFVHISAVERAGMREIVEGQKL 64
Query: 104 KYRL 107
Y L
Sbjct: 65 SYEL 68
>gi|170751403|ref|YP_001757663.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170657925|gb|ACB26980.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG+GFI PD G VFVHIS +E G G +V Y L
Sbjct: 1 MSTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKVSYEL 52
>gi|254363164|ref|ZP_04979213.1| cold shock protein [Mannheimia haemolytica PHL213]
gi|261493957|ref|ZP_05990465.1| cold shock protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261494758|ref|ZP_05991237.1| cold shock protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|452745959|ref|ZP_21945791.1| cold shock-like protein CspC [Mannheimia haemolytica serotype 6
str. H23]
gi|153095058|gb|EDN75609.1| cold shock protein [Mannheimia haemolytica PHL213]
gi|261309575|gb|EEY10799.1| cold shock protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310389|gb|EEY11584.1| cold shock protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|452086098|gb|EME02489.1| cold shock-like protein CspC [Mannheimia haemolytica serotype 6
str. H23]
Length = 70
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPL-PGDEVKYRL 107
TG +K F +KG GFITPD G VFVH S IE G Y L G +V++ +
Sbjct: 5 TGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRTLEDGAKVQFEI 55
>gi|399519732|ref|ZP_10760523.1| cold-shock DNA-binding protein family protein [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399112129|emb|CCH37082.1| cold-shock DNA-binding protein family protein [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 207
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 48 SISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
S S Q+ ETG +K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 127 SASTSVTQDDRETGTVKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLIEGQRVEF 185
>gi|347758172|ref|YP_004865734.1| Cold-shock' DNA-binding domain-containing protein [Micavibrio
aeruginosavorus ARL-13]
gi|347590690|gb|AEP09732.1| 'Cold-shock' DNA-binding domain protein [Micavibrio aeruginosavorus
ARL-13]
Length = 68
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y L K
Sbjct: 1 MATGTVKWFNTTKGFGFIQPDQGGADVFVHISAVQQAGWSTLNEGQKVSYELVTSRGK 58
>gi|298291123|ref|YP_003693062.1| cold-shock DNA-binding domain-containing protein [Starkeya novella
DSM 506]
gi|296927634|gb|ADH88443.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 70
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+TG +K F KG+GFI PDSG VFVHIS ++ G G+++ + L
Sbjct: 2 ADTGTVKWFNEQKGYGFIQPDSGGKDVFVHISAVQRSGLQGLRDGEKISFEL 53
>gi|420372820|ref|ZP_14873018.1| cold shock-like protein CspG [Shigella flexneri 1235-66]
gi|391317736|gb|EIQ74986.1| cold shock-like protein CspG [Shigella flexneri 1235-66]
Length = 70
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRLCP 109
TG +K F SKG GFITPD+G VFVH S I+ G + L G +V++ +
Sbjct: 6 TGLVKWFNESKGFGFITPDNGSKDVFVHFSAIQSGGFKTLNEGQKVEFSITA 57
>gi|345863847|ref|ZP_08816054.1| cold-shock DNA-binding domain protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124957|gb|EGW54830.1| cold-shock DNA-binding domain protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 69
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG+GF+TPD G+ +FVH S I EG G +V++ + P
Sbjct: 1 MSTGVVKWFNNAKGYGFVTPDDGDVDIFVHFSSITMEGYKTLKEGQKVEFEINQGPKGLH 60
Query: 116 KNQAVHV 122
HV
Sbjct: 61 AVNIQHV 67
>gi|392375376|ref|YP_003207209.1| Cold shock protein, DNA binding [Candidatus Methylomirabilis
oxyfera]
gi|258593069|emb|CBE69380.1| Cold shock protein, DNA binding [Candidatus Methylomirabilis
oxyfera]
Length = 67
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
GK+K F +K GFI D G FVH SD+EG P D+V++ L + +AV
Sbjct: 3 GKVKWFNVTKRFGFIVRDDGGQDAFVHASDVEGGATPRENDDVEFDLGQDDRG--RAKAV 60
Query: 121 HVEIVH 126
V I+
Sbjct: 61 RVRILR 66
>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-containing protein [Herminiimonas
arsenicoxydans]
gi|133739446|emb|CAL62496.1| Cold shock protein CspD [Herminiimonas arsenicoxydans]
Length = 67
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
++TG +K F SKG GFITPDSG +F H S I EG G +V + + P
Sbjct: 1 MQTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGP 56
>gi|187928399|ref|YP_001898886.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12J]
gi|241662975|ref|YP_002981335.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12D]
gi|309782106|ref|ZP_07676836.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
gi|404377799|ref|ZP_10982899.1| hypothetical protein HMPREF0989_03604 [Ralstonia sp. 5_2_56FAA]
gi|187725289|gb|ACD26454.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|240865002|gb|ACS62663.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|308919172|gb|EFP64839.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
gi|348612900|gb|EGY62507.1| hypothetical protein HMPREF0989_03604 [Ralstonia sp. 5_2_56FAA]
Length = 67
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+++G + L G +V+Y
Sbjct: 1 METGTVKWFNDSKGFGFITPDAGGNDLFAHFSEVQGNGFKSLQEGQKVRY 50
>gi|330503459|ref|YP_004380328.1| hypothetical protein [Pseudomonas mendocina NK-01]
gi|328917745|gb|AEB58576.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01]
Length = 240
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G++K + +KG GFI P++G VF HIS + G P PGD+V +
Sbjct: 8 GRLKSWDDAKGFGFIQPENGGADVFAHISVMRGDRRPQPGDDVLF 52
>gi|420238972|ref|ZP_14743335.1| cold shock protein [Rhizobium sp. CF080]
gi|398083402|gb|EJL74110.1| cold shock protein [Rhizobium sp. CF080]
Length = 69
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGLGQLKDGQKISYELVS 54
>gi|27377058|ref|NP_768587.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|12620649|gb|AAG60925.1|AF322013_44 ID534 [Bradyrhizobium japonicum]
gi|27350201|dbj|BAC47212.1| blr1947 [Bradyrhizobium japonicum USDA 110]
Length = 120
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
N V G +K F +KG+GF+ PD G VFVHIS +E G + G +V Y L
Sbjct: 51 NDVALGTVKWFNPTKGYGFVAPDDGGKDVFVHISAVEKAGYTSLVEGAKVGYELV 105
>gi|116251065|ref|YP_766903.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|209548412|ref|YP_002280329.1| cold-shock DNA-binding domain-containing protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|241203661|ref|YP_002974757.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|402486584|ref|ZP_10833414.1| cold shock protein [Rhizobium sp. CCGE 510]
gi|424874348|ref|ZP_18298010.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|424880632|ref|ZP_18304264.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|424888162|ref|ZP_18311765.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|424914990|ref|ZP_18338354.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|115255713|emb|CAK06794.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209534168|gb|ACI54103.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|240857551|gb|ACS55218.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|392516995|gb|EIW41727.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|392851166|gb|EJB03687.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|393170049|gb|EJC70096.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393173711|gb|EJC73755.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|401814344|gb|EJT06676.1| cold shock protein [Rhizobium sp. CCGE 510]
Length = 69
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F +KG GFI PD G VFVHIS +E G + G +++Y L K
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRELVEGQKIRYDLVR-DKKSG 59
Query: 116 KNQAVHVE 123
KN A +++
Sbjct: 60 KNSADNLQ 67
>gi|426259218|ref|ZP_18878967.1| cold-shock DNA-binding domain-containing protein, partial
[Sphingomonas sp. LH128]
gi|425916419|gb|EKV41598.1| cold-shock DNA-binding domain-containing protein, partial
[Sphingomonas sp. LH128]
Length = 192
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L TG +K F KG GFIT D G+P FVHIS +E G GD+V++ +
Sbjct: 116 QRQLTGEKATGTVKFFNSMKGFGFITRDDGQPDAFVHISAVERSGMSGLNEGDQVEFDI 174
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
G +K F +KG GFI D G VFVHIS +E G G +++++L K
Sbjct: 39 GVVKFFNAAKGFGFIQRDEGGDDVFVHISSVERAGLEGLAEGQQLEFQLVDRGGK 93
>gi|86140176|ref|ZP_01058738.1| cold shock family protein [Roseobacter sp. MED193]
gi|85823113|gb|EAQ43326.1| cold shock family protein [Roseobacter sp. MED193]
Length = 68
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ +G +K F +KG GFI PD G VFVHIS +E + D K P + +
Sbjct: 1 MASGTVKWFNSTKGFGFIAPDGGSKDVFVHISAVERSGLTGLADNQKVTFDIEPGRDGRE 60
Query: 118 QAVHVEI 124
AV++E+
Sbjct: 61 SAVNLEL 67
>gi|325291550|ref|YP_004277414.1| cold shock protein [Agrobacterium sp. H13-3]
gi|418407643|ref|ZP_12980960.1| cold shock protein [Agrobacterium tumefaciens 5A]
gi|325059403|gb|ADY63094.1| cold shock protein [Agrobacterium sp. H13-3]
gi|358005629|gb|EHJ97954.1| cold shock protein [Agrobacterium tumefaciens 5A]
Length = 69
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGMTSLNDGQKLSYELT 53
>gi|149276323|ref|ZP_01882467.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
gi|149232843|gb|EDM38218.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
Length = 68
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRL 107
TGK+K F +KG GFITP++G +FVH S I G + L GD V++ L
Sbjct: 4 TGKVKWFNSAKGFGFITPENGGKDIFVHFSAIAGDSFRELNEGDSVEFEL 53
>gi|392419788|ref|YP_006456392.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri CCUG 29243]
gi|390981976|gb|AFM31969.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri CCUG 29243]
Length = 242
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+ G +K + KG GFI P+ G VF HIS + G PL GD V Y
Sbjct: 3 QRGTLKSWNDQKGFGFIRPEQGGEDVFAHISAVHGERRPLVGDRVLY 49
>gi|258541245|ref|YP_003186678.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|329114852|ref|ZP_08243608.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
gi|384041166|ref|YP_005479910.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-12]
gi|384049681|ref|YP_005476744.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-03]
gi|384052791|ref|YP_005485885.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-07]
gi|384056023|ref|YP_005488690.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-22]
gi|384058664|ref|YP_005497792.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-26]
gi|384061958|ref|YP_005482600.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-32]
gi|384118034|ref|YP_005500658.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849259|ref|ZP_16282241.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus NBRC 101655]
gi|421852436|ref|ZP_16285124.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|256632323|dbj|BAH98298.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|256635380|dbj|BAI01349.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-03]
gi|256638435|dbj|BAI04397.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-07]
gi|256641489|dbj|BAI07444.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-22]
gi|256644544|dbj|BAI10492.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-26]
gi|256647599|dbj|BAI13540.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-32]
gi|256650652|dbj|BAI16586.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653643|dbj|BAI19570.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-12]
gi|326695749|gb|EGE47434.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
gi|371459897|dbj|GAB27444.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus NBRC 101655]
gi|371479291|dbj|GAB30327.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 68
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G FVHIS++E G + G +V Y L
Sbjct: 1 MATGTVKWFNPTKGFGFIQPDNGGQDAFVHISELERAGMHTLTEGQQVSYEL 52
>gi|254502619|ref|ZP_05114770.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
DFL-11]
gi|222438690|gb|EEE45369.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
DFL-11]
Length = 307
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ P ++G +K F KG GFITPD GE VFVHIS +E
Sbjct: 211 RGPRQSGVVKFFKSDKGFGFITPDDGETDVFVHISAVE 248
>gi|118592774|ref|ZP_01550163.1| cold shock protein [Stappia aggregata IAM 12614]
gi|118434544|gb|EAV41196.1| cold shock protein [Stappia aggregata IAM 12614]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F SKG GFI PD+G P FVHI+ +E G + + G ++ Y +
Sbjct: 3 TGTVKWFNSSKGFGFIQPDNGGPDAFVHITAVERAGMHEIVEGQKIGYDM 52
>gi|296532288|ref|ZP_06895027.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
gi|296267364|gb|EFH13250.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
Length = 68
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG+GFI P+ G VF+H+SD++ G P G+ ++Y L
Sbjct: 4 GTVKWFNATKGYGFIQPEDGSKDVFLHVSDVQRSGLREPREGERLQYDL 52
>gi|222086901|ref|YP_002545435.1| cold shock protein [Agrobacterium radiobacter K84]
gi|398382262|ref|ZP_10540356.1| cold shock protein [Rhizobium sp. AP16]
gi|221724349|gb|ACM27505.1| cold shock protein [Agrobacterium radiobacter K84]
gi|397717757|gb|EJK78361.1| cold shock protein [Rhizobium sp. AP16]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MSTGTVKWFNAAKGFGFIQPDDGATDVFVHISAVERAGMSSLRDGQKISYELVK 54
>gi|430807548|ref|ZP_19434663.1| cold-shock DNA-binding domain-containing protein [Cupriavidus sp.
HMR-1]
gi|429500181|gb|EKZ98562.1| cold-shock DNA-binding domain-containing protein [Cupriavidus sp.
HMR-1]
Length = 67
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ETG +K F SKG GFITPD+G +F H S+++G + L G +V+Y
Sbjct: 1 METGTVKWFNDSKGFGFITPDAGGDDLFAHFSEVQGNGFKSLQEGQKVRY 50
>gi|431925958|ref|YP_007238992.1| hypothetical protein Psest_0769 [Pseudomonas stutzeri RCH2]
gi|431824245|gb|AGA85362.1| putative membrane protein [Pseudomonas stutzeri RCH2]
Length = 242
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+ G +K + KG GFI P+ G VF HIS + G PL GD V Y
Sbjct: 3 QRGTLKSWNDQKGFGFIRPEQGGEDVFAHISAVHGERRPLVGDRVLY 49
>gi|92115994|ref|YP_575723.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91798888|gb|ABE61263.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 73
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
V TG +K F +KG GFI PDSG VFVHIS +E G G +V Y +
Sbjct: 7 VATGTVKWFNATKGFGFIQPDSGGKDVFVHISAVERAGLSSLNEGAKVSYEVVA 60
>gi|405382985|ref|ZP_11036760.1| cold shock protein [Rhizobium sp. CF142]
gi|397320596|gb|EJJ25029.1| cold shock protein [Rhizobium sp. CF142]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI+P G P VFVHIS +E G G V + L P+
Sbjct: 1 MNTGIVKFFNTAKGFGFISPKDGSPDVFVHISAVEQSGMSFLREGQSVSFDLVQ-DPRSG 59
Query: 116 KNQA 119
KN A
Sbjct: 60 KNAA 63
>gi|409442023|ref|ZP_11268861.1| putative cold shock protein y4cH [Rhizobium mesoamericanum STM3625]
gi|408746481|emb|CCM80120.1| putative cold shock protein y4cH [Rhizobium mesoamericanum STM3625]
Length = 67
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F KG GFITPD+G VFVH+S ++ G +V Y + K K+
Sbjct: 1 MATGMVKFFNGDKGFGFITPDNGGADVFVHVSALQAGSSLSEGQKVSYEVGQ-DRKTGKS 59
Query: 118 QAVHVEIV 125
+A +V ++
Sbjct: 60 KAENVRLI 67
>gi|296134718|ref|YP_003641960.1| cold-shock protein [Thiomonas intermedia K12]
gi|410692257|ref|YP_003622878.1| Cold shock protein [Thiomonas sp. 3As]
gi|294338681|emb|CAZ87012.1| Cold shock protein [Thiomonas sp. 3As]
gi|295794840|gb|ADG29630.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFI D G+ +FVH S+I+G
Sbjct: 2 AMQTGAVKWFNESKGFGFIAQDGGDADLFVHFSEIQG 38
>gi|170741171|ref|YP_001769826.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. 4-46]
gi|168195445|gb|ACA17392.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 73
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ + TG +K F KG GFI PD G VFVHIS +E G G +V Y L
Sbjct: 1 MDTMMSTGTVKWFNGQKGFGFIQPDDGGKDVFVHISAVERSGLQTLSEGQKVSYEL 56
>gi|194292705|ref|YP_002008612.1| cold shock transcription antiterminator [Cupriavidus taiwanensis
LMG 19424]
gi|193226609|emb|CAQ72560.1| cold shock protein, transcription antiterminator [Cupriavidus
taiwanensis LMG 19424]
Length = 67
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKY 105
+ETG +K F +KG GFITPD G +F H S IEG + L G +V+Y
Sbjct: 1 METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGSGFKSLKEGQKVRY 50
>gi|418936692|ref|ZP_13490388.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
gi|375056550|gb|EHS52729.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
TG +K F +KG GFI PD G VFVHIS +E G G +V+Y +
Sbjct: 3 TGTVKWFNSTKGFGFIQPDEGSADVFVHISAVERSGMRELTEGQKVEYEIVK 54
>gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 164
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 52 RALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L TG +K F KG GFIT D G+P FVHIS +E G GD++++ L
Sbjct: 89 RQLTGEKATGTVKFFNSMKGFGFITRDDGQPDAFVHISAVERSGLRELNEGDKLEFDL 146
>gi|410615566|ref|ZP_11326585.1| cold shock-like protein cspD [Glaciecola psychrophila 170]
gi|410164979|dbj|GAC40474.1| cold shock-like protein cspD [Glaciecola psychrophila 170]
Length = 72
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKNQ 118
GK+K F +KG GFI PD G +F H S I EG G EVKY + P +
Sbjct: 4 GKVKWFNNAKGFGFIVPDDGGDDIFAHYSTIQMEGYRSLKAGQEVKYEVQQGP------K 57
Query: 119 AVHVEIVHLTPE 130
+H E + E
Sbjct: 58 GLHAENIDFNGE 69
>gi|16519680|ref|NP_443800.1| cold-shock DNA-binding protein [Sinorhizobium fredii NGR234]
gi|398356322|ref|YP_006529648.1| putative cold shock protein y4cH [Sinorhizobium fredii USDA 257]
gi|399995622|ref|YP_006575859.1| hypothetical protein SFHH103_04853 [Sinorhizobium fredii HH103]
gi|2493775|sp|P55390.1|Y4CH_RHISN RecName: Full=Probable cold shock protein y4cH
gi|2182333|gb|AAB92423.1| putative cold-shock DNA-binding domain-containing protein
[Sinorhizobium fredii NGR234]
gi|365182469|emb|CCE99320.1| hypothetical protein SFHH103_04853 [Sinorhizobium fredii HH103]
gi|390131799|gb|AFL55176.1| putative cold shock protein y4cH [Sinorhizobium fredii USDA 257]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 2 MATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVK 55
>gi|392546396|ref|ZP_10293533.1| cold-shock DNA-binding domain-containing protein
[Pseudoalteromonas rubra ATCC 29570]
Length = 70
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F SKG GFITPD+G VFVH IEG
Sbjct: 6 TGSVKWFNESKGFGFITPDNGGTDVFVHFRAIEG 39
>gi|429768456|ref|ZP_19300612.1| cold-shock DNA-binding domain protein [Brevundimonas diminuta
470-4]
gi|429189146|gb|EKY29993.1| cold-shock DNA-binding domain protein [Brevundimonas diminuta
470-4]
Length = 179
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 31 NTLSLPSPIITRRTRTESISNRAL------QNPVETGKIKEFCRSKGHGFITPDSGEPAV 84
+ L + + TR ESI ++ P+E +K F R+KG+GF+ D + +
Sbjct: 79 TVIDLDAAVAAPVTRRESIRPSSIGQAFSADTPLEAAVVKWFNRTKGYGFVVRDGQDGDI 138
Query: 85 FVHISDIEGCYVP--LPGDEVKYRLCPIP 111
FVH+ + C + LPGD V R P
Sbjct: 139 FVHVETLRRCGLDDLLPGDPVSVRFAEGP 167
>gi|375260114|ref|YP_005019284.1| cold-shock protein [Klebsiella oxytoca KCTC 1686]
gi|397657190|ref|YP_006497892.1| cold shock protein [Klebsiella oxytoca E718]
gi|402839890|ref|ZP_10888365.1| cold shock-like protein CspI [Klebsiella sp. OBRC7]
gi|423102359|ref|ZP_17090061.1| cold shock protein CspA [Klebsiella oxytoca 10-5242]
gi|365909592|gb|AEX05045.1| cold-shock DNA-binding domain protein [Klebsiella oxytoca KCTC
1686]
gi|376388591|gb|EHT01285.1| cold shock protein CspA [Klebsiella oxytoca 10-5242]
gi|394345677|gb|AFN31798.1| cold shock protein [Klebsiella oxytoca E718]
gi|402287398|gb|EJU35850.1| cold shock-like protein CspI [Klebsiella sp. OBRC7]
Length = 70
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F SKG GFITPD+G VFVH S I+G
Sbjct: 6 TGLVKWFNESKGFGFITPDNGSKDVFVHFSAIQG 39
>gi|116696141|ref|YP_841717.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|339323470|ref|YP_004682364.1| hypothetical protein CNE_2c21830 [Cupriavidus necator N-1]
gi|113530640|emb|CAJ96987.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|338170078|gb|AEI81132.1| cold shock-like protein CspA [Cupriavidus necator N-1]
Length = 67
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ETG +K F +KG GFITPD G +F H S IEG + L G +V+Y
Sbjct: 1 METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGNGFKSLKEGQKVRY 50
>gi|452746867|ref|ZP_21946677.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri NF13]
gi|452009344|gb|EME01567.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri NF13]
Length = 242
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+ G +K + KG GFI P+ G VF HIS + G PL GD V Y
Sbjct: 3 QRGTLKNWNDQKGFGFIRPEQGGEDVFAHISAVHGERRPLVGDRVLY 49
>gi|407973831|ref|ZP_11154742.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
gi|407430891|gb|EKF43564.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
Length = 71
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++G +K F ++KG+GFITPD G+ +FVHIS ++
Sbjct: 3 QSGTVKFFNQAKGYGFITPDDGQKDIFVHISAVQ 36
>gi|357026561|ref|ZP_09088657.1| cold shock protein [Mesorhizobium amorphae CCNWGS0123]
gi|355541501|gb|EHH10681.1| cold shock protein [Mesorhizobium amorphae CCNWGS0123]
Length = 69
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVH+S +E G + G ++ Y +
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDDGSADVFVHVSAVERAGMRTIVEGQKLGYEMV 53
>gi|27379706|ref|NP_771235.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27352858|dbj|BAC49860.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 75
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+P+ TG +K F KG GFI PD G VFVHIS +E G G +V + +
Sbjct: 5 DPMNTGTVKWFNGQKGFGFIQPDQGGQDVFVHISAVERAGMSTLNEGQKVSFEIVA 60
>gi|84687901|ref|ZP_01015768.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664095|gb|EAQ10592.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
Length = 68
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGD--EVKYRLCP 109
+ TG +K F +KG+GFI PD G VFVHIS +E + D +V Y + P
Sbjct: 1 MATGTVKWFNATKGYGFIAPDDGGKDVFVHISAVERAGMTGLADNQKVSYEMIP 54
>gi|256391325|ref|YP_003112889.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256357551|gb|ACU71048.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM
44928]
Length = 69
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG+GFI D G P VFVH S IEG YR E+NQ
Sbjct: 3 TGTVKWFNGEKGYGFIAQDGGGPDVFVHFSAIEGS---------GYR------NLEENQP 47
Query: 120 VHVEIVH 126
V EI
Sbjct: 48 VEFEITQ 54
>gi|291448330|ref|ZP_06587720.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL
15998]
gi|291351277|gb|EFE78181.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL
15998]
Length = 142
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISD-IEGCYVPLPGDEVKYRL 107
TGKI F +G+GFI PD G+ VF+H +D +E Y+ G V+Y L
Sbjct: 3 TGKILRFDEVRGYGFIAPDEGDEDVFMHANDLLEEKYLYQAGRRVEYFL 51
>gi|254500655|ref|ZP_05112806.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222436726|gb|EEE43405.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 74
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G P FVHIS +E G + + G ++ Y +
Sbjct: 6 MTTGTVKWFNSTKGFGFIQPDNGGPDAFVHISAVERAGMHEIVEGQKIGYDM 57
>gi|372489285|ref|YP_005028850.1| cold shock protein [Dechlorosoma suillum PS]
gi|359355838|gb|AEV27009.1| cold shock protein [Dechlorosoma suillum PS]
Length = 67
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ETG +K F +KG GFITPD+G P +F H S+I+
Sbjct: 1 METGTVKWFNDAKGFGFITPDNGGPDLFAHFSEIK 35
>gi|254245244|ref|ZP_04938566.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
gi|126198622|gb|EAZ62685.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
Length = 203
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 4 SPLPFENKKPALSSPMLS-PQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+PLP +PA+ P+LS L +L P+ + ++ ETG
Sbjct: 81 APLPTIADQPAIVLPLLSLVLATALQLAGSLKPGKPVSRSASAPAALGGSQDSGNRETGT 140
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
+K F SKG GFI+ DSGE +FVH I EG + + G V++ +
Sbjct: 141 VKWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRILIEGQRVEFSVV 187
>gi|294677982|ref|YP_003578597.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
gi|294476802|gb|ADE86190.1| cold shock protein CspA-2 [Rhodobacter capsulatus SB 1003]
Length = 68
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG+GFI PD G VFVHIS +E + D K I + ++
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDGGGKDVFVHISAVERAGLKALSDNQKISFELISGRDGRS 60
Query: 118 QAVHVEIV 125
A ++++
Sbjct: 61 SAGDLKLL 68
>gi|330502213|ref|YP_004379082.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
gi|328916499|gb|AEB57330.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
Length = 204
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 4 SPLPFENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITR-RTRTESI----SNRALQNPV 58
+PLP +PA+ P+L+ + LSL + + + R R + S+ A Q
Sbjct: 80 APLPNIGGQPAIWLPLLT-----VVVAVALSLAAQLNVQPRAREQQPFAQPSSSAPQEDR 134
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
ETG +K F SKG GFI+ DSGE +FVH I EG V + G V++
Sbjct: 135 ETGTVKWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRVLIEGQRVEF 182
>gi|421618193|ref|ZP_16059171.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri KOS6]
gi|409779747|gb|EKN59398.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri KOS6]
Length = 242
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+ G +K + KG GFI P+ G VF HIS + G PL GD V Y
Sbjct: 3 QRGTLKSWNDQKGFGFIRPEQGGEDVFAHISAVHGERRPLVGDRVLY 49
>gi|402570250|ref|YP_006619594.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cepacia GG4]
gi|402251447|gb|AFQ51900.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cepacia GG4]
Length = 67
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPDSG +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDSGGDDLFAHFSEIRG 36
>gi|336288626|gb|AEI30670.1| cold shock protein CspA [uncultured microorganism]
Length = 72
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ NP +TG +K F KG GFITP+SG +F H S+I+
Sbjct: 1 MDNPTQTGTVKWFDDGKGFGFITPESGGKDLFAHFSEIK 39
>gi|239991333|ref|ZP_04711997.1| putative DNA binding protein [Streptomyces roseosporus NRRL 11379]
Length = 141
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISD-IEGCYVPLPGDEVKYRL 107
TGKI F +G+GFI PD G+ VF+H +D +E Y+ G V+Y L
Sbjct: 2 TGKILRFDEVRGYGFIAPDEGDEDVFMHANDLLEEKYLYQAGRRVEYFL 50
>gi|429462832|ref|YP_007184295.1| cold shock protein [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|451811422|ref|YP_007447877.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338346|gb|AFZ82769.1| cold shock protein [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|451776580|gb|AGF47579.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 82
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFITPD G +F H S I +G G +V Y L P +
Sbjct: 16 TGTVKWFNDAKGFGFITPDDGGEEIFAHFSSIQMDGFRTLKEGQKVSYELTQGP---KGK 72
Query: 118 QAVHV 122
QA+++
Sbjct: 73 QALNI 77
>gi|402774131|ref|YP_006593668.1| Cold-shock family protein [Methylocystis sp. SC2]
gi|401776151|emb|CCJ09017.1| Cold-shock family protein [Methylocystis sp. SC2]
Length = 70
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
TG +K F KG GFI PD+G VFVHIS +E G G +V Y L
Sbjct: 3 TGAVKWFNAQKGFGFIQPDAGGQDVFVHISAVERAGLDSLAEGQKVSYELV 53
>gi|393767257|ref|ZP_10355807.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
gi|392727354|gb|EIZ84669.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
Length = 69
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
TG +K F +KG+GFI PD G VFVHIS +E G + G ++ Y
Sbjct: 3 TGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQKISY 50
>gi|399010025|ref|ZP_10712404.1| cold shock protein [Pseudomonas sp. GM17]
gi|398108049|gb|EJL98036.1| cold shock protein [Pseudomonas sp. GM17]
Length = 201
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 4 SPLPFENKKPALSSPMLSPQEP---HLHSNNTLSLPSPIITRRTRTESISNRALQNPVET 60
+P+P +PA+ +L+ HL + S PS ++T +SNR +T
Sbjct: 84 APMPVIAGQPAVLFSLLTAAIAVLLHLAVSFYKSSPS---ANTSQTYDMSNR------DT 134
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
G +K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 135 GTVKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 180
>gi|187478585|ref|YP_786609.1| cold shock-like protein [Bordetella avium 197N]
gi|115423171|emb|CAJ49702.1| cold shock-like protein [Bordetella avium 197N]
Length = 81
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
NP TG +K F +KG GFITPD G +F H S I+ G G +V + + P
Sbjct: 13 NPKSTGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQGP-- 70
Query: 114 FEKNQAVHV 122
+ QA+++
Sbjct: 71 -KGKQALNI 78
>gi|94498414|ref|ZP_01304972.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
gi|94422169|gb|EAT07212.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
Length = 70
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F KG+GFI PD G P FVHI+ +E G D V Y L
Sbjct: 4 TGTVKFFNADKGYGFIAPDDGTPDAFVHITAVERAGLATLREKDRVSYDL 53
>gi|377812060|ref|YP_005044500.1| cold-shock protein [Burkholderia sp. YI23]
gi|413959712|ref|ZP_11398943.1| cold-shock protein [Burkholderia sp. SJ98]
gi|357941421|gb|AET94977.1| cold-shock DNA-binding domain protein [Burkholderia sp. YI23]
gi|413939662|gb|EKS71630.1| cold-shock protein [Burkholderia sp. SJ98]
Length = 67
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPDSG +F H S+I G
Sbjct: 1 MDTGIVKWFNDSKGFGFITPDSGSDDLFAHFSEISG 36
>gi|307947474|ref|ZP_07662807.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
gi|307769292|gb|EFO28520.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
Length = 70
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVK 104
ETG IK F +G GFITP+SG VFVHI+ E +P P + K
Sbjct: 3 ETGTIKFFNHDRGFGFITPESGGKDVFVHITAFEQAGMPAPEEGAK 48
>gi|393772125|ref|ZP_10360587.1| CspA family cold shock protein, partial [Novosphingobium sp. Rr
2-17]
gi|392722432|gb|EIZ79835.1| CspA family cold shock protein, partial [Novosphingobium sp. Rr
2-17]
Length = 169
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 52 RALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L TG +K F KG GFIT D G+P FVHIS +E G GD+V++ +
Sbjct: 94 RELTGEKATGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLSGLNEGDQVEFDI 151
>gi|311107315|ref|YP_003980168.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
gi|310762004|gb|ADP17453.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
Length = 94
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 45 RTESISNRALQ--NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPG 100
R + A+Q NP TG +K F +KG GFITPD G +F H S I+ G G
Sbjct: 13 RMSDTTATAVQGDNPKSTGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEG 72
Query: 101 DEVKYRLCPIPPKFEKNQAVHV 122
+V + + P + QA+++
Sbjct: 73 QKVAFEIIQGP---KGKQALNI 91
>gi|377575893|ref|ZP_09804877.1| putative cold shock-like protein [Escherichia hermannii NBRC
105704]
gi|377541925|dbj|GAB50042.1| putative cold shock-like protein [Escherichia hermannii NBRC
105704]
Length = 70
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLP-GDEVKYRL 107
TG +K F SKG GFITPD+G VFVH S I+ G + L G +V++ +
Sbjct: 6 TGSVKWFNESKGFGFITPDNGSKDVFVHFSAIQSGGFKTLSEGQKVEFTV 55
>gi|357026010|ref|ZP_09088118.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
gi|355541974|gb|EHH11142.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
Length = 70
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G VFVHIS +E G + G ++ + +
Sbjct: 1 MATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEI 52
>gi|310815352|ref|YP_003963316.1| cold-shock protein [Ketogulonicigenium vulgare Y25]
gi|385232889|ref|YP_005794231.1| cold shock transcription regulator [Ketogulonicigenium vulgare
WSH-001]
gi|308754087|gb|ADO42016.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
gi|343461800|gb|AEM40235.1| cold shock transcription regulator [Ketogulonicigenium vulgare
WSH-001]
Length = 68
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F +KG+GFI PD G VFVHIS ++ + D K R + + A
Sbjct: 3 TGTVKWFNTTKGYGFIAPDGGSKDVFVHISAVQRSGLEGLKDNQKVRFDIESSRDGRESA 62
Query: 120 VHVEI 124
V++ +
Sbjct: 63 VNLSV 67
>gi|83312382|ref|YP_422646.1| cold shock protein [Magnetospirillum magneticum AMB-1]
gi|82947223|dbj|BAE52087.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
Length = 69
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
G +K F +KG+GFI PD+G P VFVHIS +E G G +V + P K K
Sbjct: 3 NGSVKWFNSTKGYGFIAPDNGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPRK-GKT 61
Query: 118 QAVHVEIV 125
AV+++++
Sbjct: 62 SAVNLKVL 69
>gi|383762907|ref|YP_005441889.1| putative cold shock protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381383175|dbj|BAL99991.1| putative cold shock protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 70
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
E G +K F KG+GFITPDSG VFVH + I G GD+V++ +
Sbjct: 5 EKGTVKWFNDQKGYGFITPDSGRKDVFVHQTAIMSNGFRTLAEGDKVEFSI 55
>gi|326489997|dbj|BAJ94072.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 85
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
TG +K F SKG GFITPD G VFVH S I G
Sbjct: 7 TGVVKWFNESKGFGFITPDDGSKDVFVHFSAISGA 41
>gi|262274512|ref|ZP_06052323.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
gi|262221075|gb|EEY72389.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
Length = 73
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI PD GE +F H S I +G G V Y + P +
Sbjct: 1 MATGTVKWFNNAKGFGFICPDEGEGDIFAHYSTIQMDGYRTLKAGQTVNYEVQEGPKGYH 60
Query: 116 KNQAVHVE 123
+Q V VE
Sbjct: 61 ASQIVPVE 68
>gi|239832368|ref|ZP_04680697.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
gi|239824635|gb|EEQ96203.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
Length = 110
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 12 KPA-LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSK 70
+PA L +LS H H L + +T+ P+ TG +K F +K
Sbjct: 7 RPAVLPDDLLSINSIHGHVCEAYGLKNYYVTKDI------------PMATGTVKWFNTTK 54
Query: 71 GHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 55 GFGFIQPDQGGTDVFVHISAVQRAGLATLDEGQKVSYEIV 94
>gi|13472286|ref|NP_103853.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|319781978|ref|YP_004141454.1| cold-shock protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|337266907|ref|YP_004610962.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|14023031|dbj|BAB49639.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
gi|317167866|gb|ADV11404.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|336027217|gb|AEH86868.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 70
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G VFVHIS +E G + G ++ + +
Sbjct: 1 MATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEI 52
>gi|116693857|ref|YP_839390.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|116651857|gb|ABK12497.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
Length = 170
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
++TG +K F +KG GFITPDSG +F H S+I +G G +V Y
Sbjct: 104 MDTGTVKWFNDNKGFGFITPDSGGDDLFAHFSEIRGDGFKTLAEGQKVSY 153
>gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
Length = 68
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRL 107
TGK+K F +KG GFITP+ G +FVH S I G + L GD V++ L
Sbjct: 4 TGKVKWFNSAKGFGFITPEDGGKDIFVHFSAIAGDSFRELNEGDSVEFEL 53
>gi|413959990|ref|ZP_11399221.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
SJ98]
gi|413939940|gb|EKS71908.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
SJ98]
Length = 67
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S+++G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDAGGDDLFAHFSEVQG 36
>gi|237815887|ref|ZP_04594884.1| cold-shock family protein [Brucella abortus str. 2308 A]
gi|237789185|gb|EEP63396.1| cold-shock family protein [Brucella abortus str. 2308 A]
Length = 110
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
P+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 41 PMATGTVKWFNTTKGFGFIQPDQGGADVFVHISAVQRAGLTTLDEGQKVSYEI 93
>gi|350559855|ref|ZP_08928695.1| cold-shock DNA-binding domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349782123|gb|EGZ36406.1| cold-shock DNA-binding domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 67
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G VFVH S I+G + L G +V + + P
Sbjct: 1 MNTGVVKWFNESKGFGFITPDDGGKDVFVHFSAIDGSGFKTLAEGQKVSFEIQQTP 56
>gi|344175896|emb|CCA87027.1| cold shock/stress protein, member of the Csp-family [Ralstonia
syzygii R24]
Length = 67
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ETG +K F +KG GFITPD+G +F H S+I+G + L G +V+Y
Sbjct: 1 METGTVKWFNDTKGFGFITPDAGGNDLFAHFSEIQGNGFKSLQEGQKVRY 50
>gi|118591841|ref|ZP_01549236.1| cold shock protein [Stappia aggregata IAM 12614]
gi|118435484|gb|EAV42130.1| cold shock protein [Stappia aggregata IAM 12614]
Length = 286
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ P ++G +K F KG GFITPD G+ VFVHIS +E
Sbjct: 199 RGPRQSGTVKFFKNDKGFGFITPDEGDADVFVHISAVE 236
>gi|410631704|ref|ZP_11342377.1| cold shock-like protein cspD [Glaciecola arctica BSs20135]
gi|410148605|dbj|GAC19244.1| cold shock-like protein cspD [Glaciecola arctica BSs20135]
Length = 72
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
GK+K F +KG GFI PD G +F H S I EG G EVKY + P
Sbjct: 3 VGKVKWFNNAKGFGFIVPDDGGEDIFAHYSTIQMEGYRSLKAGQEVKYEVQQGP------ 56
Query: 118 QAVHVEIVHLTPE 130
+ +H E + E
Sbjct: 57 KGLHAENIDFKGE 69
>gi|58040591|ref|YP_192555.1| cold shock protein [Gluconobacter oxydans 621H]
gi|58003005|gb|AAW61899.1| Cold shock protein [Gluconobacter oxydans 621H]
Length = 96
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G FVHIS++E G + G V Y L
Sbjct: 29 MATGTVKWFNSTKGFGFIQPDNGGQDAFVHISELERAGMHTLNEGQHVSYEL 80
>gi|163856975|ref|YP_001631273.1| cold-shock protein [Bordetella petrii DSM 12804]
gi|163260703|emb|CAP43005.1| cold-shock protein [Bordetella petrii]
Length = 81
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
NP TG +K F +KG GFITPD G +F H S I+ G G +V + + P
Sbjct: 13 NPKSTGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQGP-- 70
Query: 114 FEKNQAVHV 122
+ QA+++
Sbjct: 71 -KGKQALNI 78
>gi|404319272|ref|ZP_10967205.1| cold shock protein CspA [Ochrobactrum anthropi CTS-325]
Length = 69
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG GFI PD G P VFVH+S +E G + G +V + L
Sbjct: 4 GTVKFFNGTKGFGFIQPDDGSPDVFVHVSAVERAGLHTLNEGQKVSFELVA 54
>gi|399035284|ref|ZP_10732748.1| cold shock protein [Rhizobium sp. CF122]
gi|398066982|gb|EJL58529.1| cold shock protein [Rhizobium sp. CF122]
Length = 69
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ ++L
Sbjct: 3 TGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMTSIVEGQKLGFQL 52
>gi|182680002|ref|YP_001834148.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635885|gb|ACB96659.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 69
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F KG+GFI PD G VFVHIS +E G G ++ Y + P
Sbjct: 1 MSTGTVKWFNAEKGYGFIQPDEGGKDVFVHISAVEQSGLRHLAEGQKINYDVVP 54
>gi|82700304|ref|YP_414878.1| cold shock DNA-binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|297248768|ref|ZP_06932486.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
5 str. B3196]
gi|82616405|emb|CAJ11468.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
2308]
gi|297175937|gb|EFH35284.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
5 str. B3196]
Length = 101
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
P+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 32 PMATGTVKWFNTTKGFGFIQPDQGGADVFVHISAVQRAGLTTLDEGQKVSYEI 84
>gi|424898197|ref|ZP_18321771.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182424|gb|EJC82463.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 109
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 41 MSTGTVKWFNATKGFGFIQPDDGAADVFVHISAVERAGMRDLKDGQKLSYELV 93
>gi|374850923|dbj|BAL53898.1| cold-shock DNA-binding domain protein [uncultured prokaryote]
Length = 81
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F R KG+GFI PD G+ VFVH S I G
Sbjct: 7 TGTVKWFSRVKGYGFIQPDGGDKDVFVHYSAIVG 40
>gi|357383321|ref|YP_004898045.1| cold-shock family protein [Pelagibacterium halotolerans B2]
gi|351591958|gb|AEQ50295.1| cold-shock family protein [Pelagibacterium halotolerans B2]
Length = 68
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+GK+K F +KG GFI PD G FVHIS +E G + G V Y L
Sbjct: 3 SGKVKFFNATKGFGFIQPDQGGEDAFVHISAVERAGMATLVEGQAVSYEL 52
>gi|107100418|ref|ZP_01364336.1| hypothetical protein PaerPA_01001443 [Pseudomonas aeruginosa PACS2]
gi|355647599|ref|ZP_09055136.1| hypothetical protein HMPREF1030_04222 [Pseudomonas sp. 2_1_26]
gi|386060137|ref|YP_005976659.1| putative cold-shock protein [Pseudomonas aeruginosa M18]
gi|392985561|ref|YP_006484148.1| cold-shock protein [Pseudomonas aeruginosa DK2]
gi|416865691|ref|ZP_11915781.1| cold-shock protein [Pseudomonas aeruginosa 138244]
gi|418583574|ref|ZP_13147643.1| cold-shock protein [Pseudomonas aeruginosa MPAO1/P1]
gi|418588939|ref|ZP_13152869.1| cold-shock protein [Pseudomonas aeruginosa MPAO1/P2]
gi|419753858|ref|ZP_14280256.1| cold-shock protein [Pseudomonas aeruginosa PADK2_CF510]
gi|421515585|ref|ZP_15962271.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
aeruginosa PAO579]
gi|424940046|ref|ZP_18355809.1| probable cold-shock protein [Pseudomonas aeruginosa NCMG1179]
gi|451987388|ref|ZP_21935546.1| Cold shock protein CspC [Pseudomonas aeruginosa 18A]
gi|334834322|gb|EGM13295.1| cold-shock protein [Pseudomonas aeruginosa 138244]
gi|346056492|dbj|GAA16375.1| probable cold-shock protein [Pseudomonas aeruginosa NCMG1179]
gi|347306443|gb|AEO76557.1| putative cold-shock protein [Pseudomonas aeruginosa M18]
gi|354827793|gb|EHF11932.1| hypothetical protein HMPREF1030_04222 [Pseudomonas sp. 2_1_26]
gi|375047182|gb|EHS39731.1| cold-shock protein [Pseudomonas aeruginosa MPAO1/P1]
gi|375052098|gb|EHS44557.1| cold-shock protein [Pseudomonas aeruginosa MPAO1/P2]
gi|384399797|gb|EIE46162.1| cold-shock protein [Pseudomonas aeruginosa PADK2_CF510]
gi|392321066|gb|AFM66446.1| cold-shock protein [Pseudomonas aeruginosa DK2]
gi|404349313|gb|EJZ75650.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
aeruginosa PAO579]
gi|451755006|emb|CCQ88069.1| Cold shock protein CspC [Pseudomonas aeruginosa 18A]
gi|453047988|gb|EME95701.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
aeruginosa PA21_ST175]
Length = 204
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 4 SPLPFENKKPALSSPMLS-PQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+PLP +PA+ P+LS L +L P+ + ++ ETG
Sbjct: 82 APLPTIADQPAIVLPLLSLVLATALQLAGSLKPGKPVSRSASAPAALGGSQDSGNRETGT 141
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
+K F SKG GFI+ DSGE +FVH I EG + + G V++ +
Sbjct: 142 VKWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRILIEGQRVEFSVV 188
>gi|405379519|ref|ZP_11033369.1| cold shock protein [Rhizobium sp. CF142]
gi|397324050|gb|EJJ28438.1| cold shock protein [Rhizobium sp. CF142]
Length = 69
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD+G VFVHIS +E G G +V Y +
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGLRSLADGQKVTYDIV 53
>gi|17986781|ref|NP_539415.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
gi|148560167|ref|YP_001259392.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225627956|ref|ZP_03785992.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|237815906|ref|ZP_04594903.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|297248787|ref|ZP_06932505.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
gi|306843139|ref|ZP_07475759.1| cold shock protein [Brucella sp. BO2]
gi|384445546|ref|YP_005604265.1| cold shock protein CSPA [Brucella melitensis NI]
gi|17982411|gb|AAL51679.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
gi|148371424|gb|ABQ61403.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225617119|gb|EEH14165.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|237789204|gb|EEP63415.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|297175956|gb|EFH35303.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
gi|306286662|gb|EFM58220.1| cold shock protein [Brucella sp. BO2]
gi|349743535|gb|AEQ09078.1| cold shock protein CSPA [Brucella melitensis NI]
Length = 83
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG++K F KG GFI PD G +FVHIS ++ +P D K P + K
Sbjct: 14 AQTGQVKFFNTEKGFGFIKPDDGGADIFVHISAVQASGLPGLADNQKVSYETEPDRRGKG 73
Query: 118 -QAVHVEIV 125
+AV++ I
Sbjct: 74 PKAVNITIT 82
>gi|254491496|ref|ZP_05104675.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010]
gi|224462974|gb|EEF79244.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010]
Length = 207
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLPGDEVKY--------RLCPIP 111
GKIK + KG+GFI P+SG +F+HI ++ VP G+ + Y RLC I
Sbjct: 7 GKIKTWNEGKGYGFIIPESGGKDIFLHIKSVQSRGRVPKLGETIAYTLSKDKQNRLCAID 66
Query: 112 PKFE 115
++
Sbjct: 67 ATYD 70
>gi|33593717|ref|NP_881361.1| cold-shock protein [Bordetella pertussis Tohama I]
gi|33597156|ref|NP_884799.1| cold-shock protein [Bordetella parapertussis 12822]
gi|33601000|ref|NP_888560.1| cold-shock protein [Bordetella bronchiseptica RB50]
gi|384205006|ref|YP_005590745.1| putative cold-shock protein [Bordetella pertussis CS]
gi|408414683|ref|YP_006625390.1| cold-shock protein [Bordetella pertussis 18323]
gi|410420801|ref|YP_006901250.1| cold-shock protein [Bordetella bronchiseptica MO149]
gi|410472561|ref|YP_006895842.1| cold-shock protein [Bordetella parapertussis Bpp5]
gi|412338815|ref|YP_006967570.1| cold-shock protein [Bordetella bronchiseptica 253]
gi|427815295|ref|ZP_18982359.1| putative cold-shock protein [Bordetella bronchiseptica 1289]
gi|427819567|ref|ZP_18986630.1| putative cold-shock protein [Bordetella bronchiseptica D445]
gi|427824963|ref|ZP_18992025.1| putative cold-shock protein [Bordetella bronchiseptica Bbr77]
gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I]
gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis]
gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS]
gi|401776853|emb|CCJ62095.1| putative cold-shock protein [Bordetella pertussis 18323]
gi|408442671|emb|CCJ49229.1| putative cold-shock protein [Bordetella parapertussis Bpp5]
gi|408448096|emb|CCJ59775.1| putative cold-shock protein [Bordetella bronchiseptica MO149]
gi|408768649|emb|CCJ53417.1| putative cold-shock protein [Bordetella bronchiseptica 253]
gi|410566295|emb|CCN23856.1| putative cold-shock protein [Bordetella bronchiseptica 1289]
gi|410570567|emb|CCN18753.1| putative cold-shock protein [Bordetella bronchiseptica D445]
gi|410590228|emb|CCN05310.1| putative cold-shock protein [Bordetella bronchiseptica Bbr77]
Length = 81
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
NP TG +K F +KG GFITPD G +F H S I+ G G +V + + P
Sbjct: 13 NPKATGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQGP-- 70
Query: 114 FEKNQAVHV 122
+ QA+++
Sbjct: 71 -KGKQALNI 78
>gi|377812237|ref|YP_005044677.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
YI23]
gi|357941598|gb|AET95154.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
YI23]
Length = 67
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S+++G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDAGGDDLFAHFSEVQG 36
>gi|293606230|ref|ZP_06688593.1| cold shock transcription regulator protein [Achromobacter
piechaudii ATCC 43553]
gi|359800514|ref|ZP_09303055.1| putative cold-shock protein [Achromobacter arsenitoxydans SY8]
gi|421486982|ref|ZP_15934512.1| cold-shock protein [Achromobacter piechaudii HLE]
gi|422317742|ref|ZP_16399041.1| cold-shock protein [Achromobacter xylosoxidans C54]
gi|423018746|ref|ZP_17009467.1| putative cold-shock protein [Achromobacter xylosoxidans AXX-A]
gi|292815377|gb|EFF74495.1| cold shock transcription regulator protein [Achromobacter
piechaudii ATCC 43553]
gi|317407692|gb|EFV87625.1| cold-shock protein [Achromobacter xylosoxidans C54]
gi|338778178|gb|EGP42657.1| putative cold-shock protein [Achromobacter xylosoxidans AXX-A]
gi|359361497|gb|EHK63253.1| putative cold-shock protein [Achromobacter arsenitoxydans SY8]
gi|400194707|gb|EJO27713.1| cold-shock protein [Achromobacter piechaudii HLE]
Length = 81
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
NP TG +K F +KG GFITPD G +F H S I+ G G +V + + P
Sbjct: 13 NPKSTGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQGP-- 70
Query: 114 FEKNQAVHV 122
+ QA+++
Sbjct: 71 -KGKQALNI 78
>gi|407798149|ref|ZP_11145060.1| cold shock family protein [Oceaniovalibus guishaninsula JLT2003]
gi|407059848|gb|EKE45773.1| cold shock family protein [Oceaniovalibus guishaninsula JLT2003]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F +KG+GFI PD G +FVHIS +E + D K R I + + A
Sbjct: 3 TGTVKWFNTTKGYGFIAPDDGGKDIFVHISAVERAGMTGLADNQKVRYELISGRDGRESA 62
Query: 120 VHVEIV 125
++ +
Sbjct: 63 GDLQAL 68
>gi|340030573|ref|ZP_08666636.1| cold-shock DNA-binding domain-containing protein [Paracoccus sp.
TRP]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNATKGYGFIAPDDGGKDVFVHISAVE 35
>gi|119383705|ref|YP_914761.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119373472|gb|ABL69065.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNATKGYGFIAPDDGGKDVFVHISAVE 35
>gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
Length = 106
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 19/78 (24%)
Query: 31 NTLSLPSPII-----------TRRTRTESISNRALQNPVET----GKIKEFCRSKGHGFI 75
NT SLP+ I+ ++R R +N+ ++ E G++K F SKG GFI
Sbjct: 2 NTASLPNLILVPQAVMSLFYLSQRLR----ANKTIEGICEMAKIKGQVKWFNESKGFGFI 57
Query: 76 TPDSGEPAVFVHISDIEG 93
TP G VFVH S I+G
Sbjct: 58 TPADGSKDVFVHFSAIQG 75
>gi|407785415|ref|ZP_11132563.1| cold-shock DNA-binding domain-containing protein [Celeribacter
baekdonensis B30]
gi|407203447|gb|EKE73434.1| cold-shock DNA-binding domain-containing protein [Celeribacter
baekdonensis B30]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYR 106
TG +K F +KG GFI PD G VFVHIS +E + D +K R
Sbjct: 3 TGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGMTGLADNMKIR 49
>gi|163842703|ref|YP_001627107.1| ATP/GTP-binding motif-containing protein [Brucella suis ATCC 23445]
gi|163673426|gb|ABY37537.1| ATP/GTP-binding site motif A (P-loop) protein [Brucella suis ATCC
23445]
Length = 69
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ G +K F +KG GFI PD G VFVHIS +E G + + G +V Y +
Sbjct: 1 MANGTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVQGQKVGYEVVA 54
>gi|153011838|ref|YP_001373051.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151563726|gb|ABS17222.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLP-GDEVKYRL 107
TG +K F + KG GFITP+SG VFVH+S + V L G +V Y +
Sbjct: 3 TGTVKFFNQDKGFGFITPESGGSDVFVHVSGLAQAGVSLGEGQKVSYEI 51
>gi|220933359|ref|YP_002512258.1| cold-shock DNA-binding domain-containing protein
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219994669|gb|ACL71271.1| cold-shock DNA-binding domain protein [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 67
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F SKG GFITPD G VFVH S I G
Sbjct: 1 MATGTVKWFNESKGFGFITPDDGGKDVFVHFSAISGS 37
>gi|357023240|ref|ZP_09085445.1| cold shock protein [Mesorhizobium amorphae CCNWGS0123]
gi|355544830|gb|EHH13901.1| cold shock protein [Mesorhizobium amorphae CCNWGS0123]
Length = 70
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDNGGQDVFVHISAVERAGLSTLADGQKINYEV 52
>gi|334145421|ref|YP_004538631.1| cold shock protein [Novosphingobium sp. PP1Y]
gi|333937305|emb|CCA90664.1| cold shock protein (beta-ribbon, CspA family) [Novosphingobium sp.
PP1Y]
Length = 223
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 29 SNNTLSLPSPIIT--RRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFV 86
S + L++ +I RR R + R TG +K F +KG GFI D G+P FV
Sbjct: 125 SASELTIVGEVIVAERRERPAAPVQRQSTGEKATGTVKFFNGTKGFGFIVRDDGQPDAFV 184
Query: 87 HISDIE--GCYVPLPGDEVKYRL 107
HIS +E G + GD++++ +
Sbjct: 185 HISAVERSGLHGLSEGDQLEFEI 207
>gi|345869539|ref|ZP_08821496.1| cold-shock DNA-binding domain protein [Thiorhodococcus drewsii AZ1]
gi|343922922|gb|EGV33619.1| cold-shock DNA-binding domain protein [Thiorhodococcus drewsii AZ1]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG+GF+ PD E VFVH S D+EG G V++ L P
Sbjct: 3 TGVVKWFNNAKGYGFVQPDGREEDVFVHFSSIDMEGYKTLREGQRVEFELSEGP------ 56
Query: 118 QAVHVEIVH 126
+ +H VH
Sbjct: 57 KGLHAANVH 65
>gi|338980110|ref|ZP_08631422.1| Cold-shock DNA-binding domain-containing protein [Acidiphilium sp.
PM]
gi|338208986|gb|EGO96793.1| Cold-shock DNA-binding domain-containing protein [Acidiphilium sp.
PM]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K + KG+GFITP+ G VFVH+SD+E G G ++ Y L
Sbjct: 4 GTVKWYNSQKGYGFITPNDGSKDVFVHVSDVERAGLGSLNEGQKLNYEL 52
>gi|17986801|ref|NP_539435.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
gi|17982433|gb|AAL51699.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
Length = 101
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
P+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 32 PMATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEI 84
>gi|399518000|ref|ZP_10759532.1| Cold shock protein [Leuconostoc pseudomesenteroides 4882]
gi|398647041|emb|CCJ67559.1| Cold shock protein [Leuconostoc pseudomesenteroides 4882]
Length = 74
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
++TGK+K + + +G+G+ITPD G +FVH + IE G + G+ V+Y L
Sbjct: 1 MKTGKVKIWQKERGYGYITPDDGGDDIFVHFNGIEMDGFKSLIQGERVEYVLV 53
>gi|393770229|ref|ZP_10358734.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
gi|392724383|gb|EIZ81743.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
Length = 69
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG+GFI PD G VFVH+S +E G G +V Y L
Sbjct: 3 TGTVKWFNETKGYGFIQPDDGGKDVFVHVSAVERAGLRGLNEGQKVSYEL 52
>gi|126739561|ref|ZP_01755253.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
gi|126719207|gb|EBA15917.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
Length = 68
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ +G +K F +KG+GFI PD G VFVHIS +E + D K P + +
Sbjct: 1 MASGTVKWFNSTKGYGFIAPDGGSKDVFVHISAVERSGLTGLADNQKVTFDIEPGRDGRE 60
Query: 118 QAVHVEI 124
AV++ +
Sbjct: 61 SAVNLAL 67
>gi|402827525|ref|ZP_10876575.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
LH128]
gi|402258939|gb|EJU09252.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
LH128]
Length = 225
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 29 SNNTLSLPSPIIT--RRTRTES-ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVF 85
S + L++ +I RR R+ + + N++ TG +K F KG GFI D G+P F
Sbjct: 127 SASELTIVGEVIVAERRERSAAPVQNQSTGEKA-TGTVKFFNSMKGFGFIVRDDGQPDAF 185
Query: 86 VHISDIE--GCYVPLPGDEVKYRL 107
VHIS +E G + GD++++ +
Sbjct: 186 VHISAVERSGLHGLSEGDQLEFEI 209
>gi|397165572|ref|ZP_10489021.1| cold shock-like protein CspG [Enterobacter radicincitans DSM 16656]
gi|396092854|gb|EJI90415.1| cold shock-like protein CspG [Enterobacter radicincitans DSM 16656]
Length = 70
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRL 107
TG +K F SKG GFITPD+G VFVH S I+ G + L G +V++ +
Sbjct: 6 TGLVKWFNESKGFGFITPDNGSKDVFVHFSAIQSGGFKTLNEGQKVEFTI 55
>gi|148559048|ref|YP_001259374.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|148370305|gb|ABQ60284.1| cold-shock family protein [Brucella ovis ATCC 25840]
Length = 105
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
P+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 41 PMATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEI 93
>gi|227818999|ref|YP_002822970.1| cold shock protein Y4CH [Sinorhizobium fredii NGR234]
gi|227337998|gb|ACP22217.1| probable cold shock protein Y4CH [Sinorhizobium fredii NGR234]
Length = 69
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
+ +G +K F +KG GFI PD G P VFVHIS +E G G +V +
Sbjct: 1 MASGTVKWFNSTKGFGFIAPDDGSPDVFVHISAVERAGLSTLKEGQKVSF 50
>gi|254461497|ref|ZP_05074913.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium HTCC2083]
gi|206678086|gb|EDZ42573.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
bacterium HTCC2083]
Length = 68
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG GFI PD G VFVHIS +E + D K P + +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERSGLTGLADNQKVTFDIEPGRDGRE 60
Query: 118 QAVHVEI 124
A+++ +
Sbjct: 61 AAINIAL 67
>gi|116048886|ref|YP_792313.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|313105848|ref|ZP_07792111.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
gi|386064710|ref|YP_005980014.1| cold-shock protein [Pseudomonas aeruginosa NCGM2.S1]
gi|115584107|gb|ABJ10122.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|310878613|gb|EFQ37207.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
gi|348033269|dbj|BAK88629.1| cold-shock protein [Pseudomonas aeruginosa NCGM2.S1]
Length = 204
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 4 SPLPFENKKPALSSPMLS-PQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+PLP +PA+ P+LS L +L P+ + ++ ETG
Sbjct: 82 APLPTIADQPAIVLPLLSLVLATALQLAGSLKPGKPVSRSASAPTALGGSQDSGNRETGT 141
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
+K F SKG GFI+ DSGE +FVH I EG + + G V++ +
Sbjct: 142 VKWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRILIEGQRVEFSVV 188
>gi|395491826|ref|ZP_10423405.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
PAMC 26617]
Length = 147
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRL 107
R+L TG +K F KG GFI D G+P FVHIS +E G L GD +++ L
Sbjct: 72 QRSLTGEKATGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERGGMTSLNEGDRLEFEL 130
>gi|85703785|ref|ZP_01034889.1| Cold-shock protein [Roseovarius sp. 217]
gi|85672713|gb|EAQ27570.1| Cold-shock protein [Roseovarius sp. 217]
Length = 114
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVK 104
+ + TG +K F +KG+GFI PD G VFVHIS +E + D+ K
Sbjct: 45 STMATGTVKWFNATKGYGFIAPDGGGKDVFVHISAVERAGLTGLADDQK 93
>gi|91783230|ref|YP_558436.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|390570700|ref|ZP_10250957.1| cold-shock DNA-binding protein family protein [Burkholderia
terrae BS001]
gi|91687184|gb|ABE30384.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|389937330|gb|EIM99201.1| cold-shock DNA-binding protein family protein [Burkholderia
terrae BS001]
Length = 67
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDAGGDDLFAHFSEIRG 36
>gi|46580267|ref|YP_011075.1| cold shock domain-containing protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|387153306|ref|YP_005702242.1| excalibur domain-containing protein [Desulfovibrio vulgaris RCH1]
gi|46449684|gb|AAS96334.1| cold shock domain protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233750|gb|ADP86604.1| Excalibur domain protein [Desulfovibrio vulgaris RCH1]
Length = 178
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLP--GDEVKYRLCPIPPKFE 115
+ GKI ++ +G GFI+PD G P VF HIS + PLP G+ V Y L P PK
Sbjct: 2 FDQGKIAQWNDERGFGFISPDDGSPRVFAHISAFRSRH-PLPEVGERVLYYLGPPSPKGS 60
Query: 116 KNQAV 120
+ V
Sbjct: 61 RASVV 65
>gi|418291845|ref|ZP_12903805.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379063288|gb|EHY76031.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 242
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+ G +K + KG GFI P+ G VF HIS + G PL GD V Y
Sbjct: 3 QRGTLKSWNDQKGFGFIRPEQGGEDVFAHISAVHGERRPLVGDRVLY 49
>gi|296444335|ref|ZP_06886300.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296257982|gb|EFH05044.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 70
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K F KG GFI PDSG VFVHIS +E G G ++ Y I +
Sbjct: 1 MQTGVVKWFNSQKGFGFIQPDSGGADVFVHISAVERAGLRGLAEGQKISYETV-IDKRSG 59
Query: 116 KNQAVHVEI 124
K+ A +++
Sbjct: 60 KSSADQLQV 68
>gi|255264493|ref|ZP_05343835.1| conserved domain protein [Thalassiobium sp. R2A62]
gi|255106828|gb|EET49502.1| conserved domain protein [Thalassiobium sp. R2A62]
Length = 69
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDGGSKDVFVHISAVE 35
>gi|190890260|ref|YP_001976802.1| cold shock protein [Rhizobium etli CIAT 652]
gi|218509122|ref|ZP_03507000.1| cold shock protein [Rhizobium etli Brasil 5]
gi|218513064|ref|ZP_03509904.1| cold shock protein [Rhizobium etli 8C-3]
gi|218672806|ref|ZP_03522475.1| cold shock protein [Rhizobium etli GR56]
gi|417104701|ref|ZP_11961536.1| cold shock protein [Rhizobium etli CNPAF512]
gi|190695539|gb|ACE89624.1| cold shock protein [Rhizobium etli CIAT 652]
gi|327190777|gb|EGE57846.1| cold shock protein [Rhizobium etli CNPAF512]
Length = 69
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDDGAADVFVHISAVERAGMRDLKDGQKLSYELV 53
>gi|83951672|ref|ZP_00960404.1| cold shock family protein [Roseovarius nubinhibens ISM]
gi|83836678|gb|EAP75975.1| cold shock family protein [Roseovarius nubinhibens ISM]
Length = 68
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDE--VKYRL 107
TG +K F +KG+GFI PD G VFVHIS +E + DE V Y L
Sbjct: 3 TGTVKWFNTTKGYGFIAPDDGGKDVFVHISAVERSGLTGLADEQKVGYEL 52
>gi|13476765|ref|NP_108334.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|319784316|ref|YP_004143792.1| cold-shock protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|433775926|ref|YP_007306393.1| cold shock protein [Mesorhizobium australicum WSM2073]
gi|14027526|dbj|BAB53795.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|317170204|gb|ADV13742.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|433667941|gb|AGB47017.1| cold shock protein [Mesorhizobium australicum WSM2073]
Length = 69
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G + G ++ Y +
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMRDIVEGQKLGYEMV 53
>gi|27377231|ref|NP_768760.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|384221399|ref|YP_005612565.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|27350374|dbj|BAC47385.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|354960298|dbj|BAL12977.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
Length = 68
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD GE VFVHI +E
Sbjct: 1 MATGIVKWFSATKGYGFIKPDDGEADVFVHIRSVE 35
>gi|218681656|ref|ZP_03529457.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
Length = 69
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVHIS +E G + G +++Y L
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRELVEGQKIRYDLV 53
>gi|222147128|ref|YP_002548085.1| cold shock protein [Agrobacterium vitis S4]
gi|221734118|gb|ACM35081.1| cold shock protein [Agrobacterium vitis S4]
Length = 74
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G P FVHIS +E G + G ++ Y +
Sbjct: 8 TGTVKWFNSTKGFGFIQPDNGGPDAFVHISAVERAGMREIVEGQKIAYDM 57
>gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter
sp. HTCC2649]
gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter
sp. HTCC2649]
Length = 314
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
G ++ + +G GFI PD+G +FVH+S + G PGD V+Y++
Sbjct: 253 GVVERYDAERGFGFIAPDAGGADLFVHVSVLRGAEALEPGDRVRYQV 299
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 50 SNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLP-GDEVKYRLC 108
+ +A+ + G + + KG GFIT DSG P VFVH+ ++ L GD V Y +
Sbjct: 147 AQQAVVSDGADGTVSWYDGGKGFGFITSDSGGPDVFVHVRELADGLTELGEGDRVTYDVV 206
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 41 TRRTRTESISNRALQNPVET-GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYV 96
RR R +++A P+ G + + SKG+GFITPD G +FVH S I G V
Sbjct: 62 ARRVRV--TADQAADTPLGVLGTVSWYEPSKGYGFITPDGGGTEIFVHSSAIVGGGV 116
>gi|421748144|ref|ZP_16185780.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
necator HPC(L)]
gi|409773169|gb|EKN55016.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
necator HPC(L)]
Length = 67
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
++TG +K F SKG GFITPD+G +F H S+I+G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDAGGDDLFAHFSEIQGS 37
>gi|293602670|ref|ZP_06685111.1| CspA family cold shock transcriptional regulator [Achromobacter
piechaudii ATCC 43553]
gi|311109651|ref|YP_003982504.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
gi|421486263|ref|ZP_15933810.1| cold shock protein CspB [Achromobacter piechaudii HLE]
gi|292818861|gb|EFF77901.1| CspA family cold shock transcriptional regulator [Achromobacter
piechaudii ATCC 43553]
gi|310764340|gb|ADP19789.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
gi|400195476|gb|EJO28465.1| cold shock protein CspB [Achromobacter piechaudii HLE]
Length = 68
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG+GFITPD G VF H S I+G Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGYGFITPDVGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
>gi|116250366|ref|YP_766204.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|209547826|ref|YP_002279743.1| cold-shock DNA-binding domain-containing protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|218658368|ref|ZP_03514298.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
gi|241203000|ref|YP_002974096.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|402490419|ref|ZP_10837208.1| cold shock protein [Rhizobium sp. CCGE 510]
gi|424873575|ref|ZP_18297237.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|424879933|ref|ZP_18303565.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|424888725|ref|ZP_18312328.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|424915611|ref|ZP_18338975.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|115255014|emb|CAK06088.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209533582|gb|ACI53517.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|240856890|gb|ACS54557.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|392516296|gb|EIW41028.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|392851787|gb|EJB04308.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|393169276|gb|EJC69323.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393174274|gb|EJC74318.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|401810445|gb|EJT02818.1| cold shock protein [Rhizobium sp. CCGE 510]
Length = 69
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDDGAADVFVHISAVERAGMRDLKDGQKLSYELV 53
>gi|17987793|ref|NP_540427.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
gi|62289409|ref|YP_221202.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82699335|ref|YP_413909.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
biovar Abortus 2308]
gi|189023660|ref|YP_001934428.1| ATP/GTP-binding protein [Brucella abortus S19]
gi|225626929|ref|ZP_03784968.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|225851957|ref|YP_002732190.1| ATP/GTP-binding domain-containing protein [Brucella melitensis ATCC
23457]
gi|237814894|ref|ZP_04593892.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|256264533|ref|ZP_05467065.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
gi|256368878|ref|YP_003106384.1| cold shock protein CspA [Brucella microti CCM 4915]
gi|260545840|ref|ZP_05821581.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260563497|ref|ZP_05833983.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
1 str. 16M]
gi|260754199|ref|ZP_05866547.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
gi|260757419|ref|ZP_05869767.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
gi|260761244|ref|ZP_05873587.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260883224|ref|ZP_05894838.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
gi|261213446|ref|ZP_05927727.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
gi|261218434|ref|ZP_05932715.1| predicted protein [Brucella ceti M13/05/1]
gi|261221638|ref|ZP_05935919.1| cold shock protein cspA [Brucella ceti B1/94]
gi|261315336|ref|ZP_05954533.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
gi|261317099|ref|ZP_05956296.1| predicted protein [Brucella pinnipedialis B2/94]
gi|261320717|ref|ZP_05959914.1| cold shock protein cspA [Brucella ceti M644/93/1]
gi|261324552|ref|ZP_05963749.1| predicted protein [Brucella neotomae 5K33]
gi|261751767|ref|ZP_05995476.1| predicted protein [Brucella suis bv. 5 str. 513]
gi|261757654|ref|ZP_06001363.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
gi|265983577|ref|ZP_06096312.1| cold shock protein cspA [Brucella sp. 83/13]
gi|265988135|ref|ZP_06100692.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
gi|265990551|ref|ZP_06103108.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
gi|265994381|ref|ZP_06106938.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
gi|265997600|ref|ZP_06110157.1| cold shock protein cspA [Brucella ceti M490/95/1]
gi|294851801|ref|ZP_06792474.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|297247821|ref|ZP_06931539.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
5 str. B3196]
gi|306839881|ref|ZP_07472679.1| cold shock protein CSPA [Brucella sp. NF 2653]
gi|306842293|ref|ZP_07474955.1| cold shock protein CSPA [Brucella sp. BO2]
gi|306845051|ref|ZP_07477632.1| cold shock protein CSPA [Brucella inopinata BO1]
gi|340790064|ref|YP_004755528.1| cold shock protein CspA [Brucella pinnipedialis B2/94]
gi|376273835|ref|YP_005152413.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
A13334]
gi|384210809|ref|YP_005599891.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
M5-90]
gi|384407908|ref|YP_005596529.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28]
gi|384444525|ref|YP_005603244.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
NI]
gi|423167422|ref|ZP_17154125.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI435a]
gi|423170202|ref|ZP_17156877.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI474]
gi|423173718|ref|ZP_17160389.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI486]
gi|423176997|ref|ZP_17163643.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI488]
gi|423179635|ref|ZP_17166276.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI010]
gi|423182765|ref|ZP_17169402.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI016]
gi|423186292|ref|ZP_17172906.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI021]
gi|423189430|ref|ZP_17176040.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI259]
gi|17983518|gb|AAL52691.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
gi|62195541|gb|AAX73841.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82615436|emb|CAJ10405.1| ATP/GTP-binding site motif A (P-loop):Cold-shock DNA-binding domain
[Brucella melitensis biovar Abortus 2308]
gi|189019232|gb|ACD71954.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
gi|225618586|gb|EEH15629.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|225640322|gb|ACO00236.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
ATCC 23457]
gi|237789731|gb|EEP63941.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|255999036|gb|ACU47435.1| cold shock protein CspA [Brucella microti CCM 4915]
gi|260097247|gb|EEW81122.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260153513|gb|EEW88605.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
1 str. 16M]
gi|260667737|gb|EEX54677.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
gi|260671676|gb|EEX58497.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260674307|gb|EEX61128.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
gi|260872752|gb|EEX79821.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
gi|260915053|gb|EEX81914.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
gi|260920222|gb|EEX86875.1| cold shock protein cspA [Brucella ceti B1/94]
gi|260923523|gb|EEX90091.1| predicted protein [Brucella ceti M13/05/1]
gi|261293407|gb|EEX96903.1| cold shock protein cspA [Brucella ceti M644/93/1]
gi|261296322|gb|EEX99818.1| predicted protein [Brucella pinnipedialis B2/94]
gi|261300532|gb|EEY04029.1| predicted protein [Brucella neotomae 5K33]
gi|261304362|gb|EEY07859.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
gi|261737638|gb|EEY25634.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
gi|261741520|gb|EEY29446.1| predicted protein [Brucella suis bv. 5 str. 513]
gi|262552068|gb|EEZ08058.1| cold shock protein cspA [Brucella ceti M490/95/1]
gi|262765494|gb|EEZ11283.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
gi|263001335|gb|EEZ13910.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
gi|263094866|gb|EEZ18604.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
gi|264660332|gb|EEZ30593.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
gi|264662169|gb|EEZ32430.1| cold shock protein cspA [Brucella sp. 83/13]
gi|294820390|gb|EFG37389.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|297174990|gb|EFH34337.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
5 str. B3196]
gi|306274683|gb|EFM56472.1| cold shock protein CSPA [Brucella inopinata BO1]
gi|306287601|gb|EFM59052.1| cold shock protein CSPA [Brucella sp. BO2]
gi|306405067|gb|EFM61348.1| cold shock protein CSPA [Brucella sp. NF 2653]
gi|326408455|gb|ADZ65520.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28]
gi|326538172|gb|ADZ86387.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
M5-90]
gi|340558522|gb|AEK53760.1| cold shock protein CspA [Brucella pinnipedialis B2/94]
gi|349742521|gb|AEQ08064.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
NI]
gi|363401441|gb|AEW18411.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
A13334]
gi|374540856|gb|EHR12355.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI435a]
gi|374541464|gb|EHR12959.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI486]
gi|374542438|gb|EHR13927.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI474]
gi|374551154|gb|EHR22589.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI010]
gi|374551611|gb|EHR23045.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI016]
gi|374552747|gb|EHR24170.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI488]
gi|374557349|gb|EHR28746.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI259]
gi|374557971|gb|EHR29365.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI021]
Length = 69
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG GFI PD G VFVHIS +E G + + G +V Y +
Sbjct: 4 GTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVEGQKVGYEVVA 54
>gi|399520254|ref|ZP_10761030.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111695|emb|CCH37589.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 241
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G++K + +KG GFI P +G VF HIS + G P PGD+V +
Sbjct: 8 GRLKSWDDAKGFGFIQPANGGADVFAHISVMRGDRRPQPGDDVLF 52
>gi|423107678|ref|ZP_17095373.1| cold shock protein CspA [Klebsiella oxytoca 10-5243]
gi|423113646|ref|ZP_17101337.1| cold shock protein CspA [Klebsiella oxytoca 10-5245]
gi|376386411|gb|EHS99122.1| cold shock protein CspA [Klebsiella oxytoca 10-5243]
gi|376387917|gb|EHT00619.1| cold shock protein CspA [Klebsiella oxytoca 10-5245]
Length = 70
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLP-GDEVKYRL 107
TG +K F SKG GFITPD+G VFVH S I+ G + L G +V++ +
Sbjct: 6 TGLVKWFNESKGFGFITPDNGSKDVFVHFSAIQSGGFKTLSEGQKVEFTI 55
>gi|359794760|ref|ZP_09297449.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359248933|gb|EHK52608.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 69
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
TG +K F +KG GFI PD+G VFVHIS +E G + G ++ Y
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGSDVFVHISAVERAGMTSIVEGQKIGY 50
>gi|398352201|ref|YP_006397665.1| cold shock protein y4cH [Sinorhizobium fredii USDA 257]
gi|390127527|gb|AFL50908.1| putative cold shock protein y4cH [Sinorhizobium fredii USDA 257]
Length = 68
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGFGFIQPDDGGADVFVHISAVERAGLRELKDGQKITYELVA 54
>gi|418939352|ref|ZP_13492751.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
gi|375053943|gb|EHS50339.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
Length = 69
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G P FVHIS +E G + G ++ Y +
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGPDAFVHISAVERAGMREIVEGQKIGYDM 52
>gi|86356213|ref|YP_468105.1| cold shock protein [Rhizobium etli CFN 42]
gi|86280315|gb|ABC89378.1| cold shock protein [Rhizobium etli CFN 42]
Length = 69
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDDGAADVFVHISAVERAGMRDLKDGQKLSYDLV 53
>gi|374622107|ref|ZP_09694634.1| cold-shock DNA-binding domain-containing protein
[Ectothiorhodospira sp. PHS-1]
gi|373941235|gb|EHQ51780.1| cold-shock DNA-binding domain-containing protein
[Ectothiorhodospira sp. PHS-1]
Length = 67
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFITPD G +FVH S IEG
Sbjct: 3 TGTVKWFNEGKGFGFITPDDGGKDIFVHFSAIEG 36
>gi|159044762|ref|YP_001533556.1| putative cold-shock DNA-binding domain-containing protein
[Dinoroseobacter shibae DFL 12]
gi|157912522|gb|ABV93955.1| putative cold-shock DNA-binding domain protein [Dinoroseobacter
shibae DFL 12]
Length = 68
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNETKGYGFIAPDGGSRDVFVHISAVE 35
>gi|23502382|ref|NP_698509.1| cold-shock family protein [Brucella suis 1330]
gi|62290402|ref|YP_222195.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82700324|ref|YP_414898.1| cold shock DNA-binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|161619460|ref|YP_001593347.1| hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
gi|163843768|ref|YP_001628172.1| hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
gi|189024628|ref|YP_001935396.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|225852991|ref|YP_002733224.1| hypothetical protein BMEA_A1565 [Brucella melitensis ATCC 23457]
gi|256263527|ref|ZP_05466059.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
gi|256369930|ref|YP_003107441.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260546939|ref|ZP_05822678.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
NCTC 8038]
gi|260565265|ref|ZP_05835749.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260565989|ref|ZP_05836459.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
4 str. 40]
gi|260755234|ref|ZP_05867582.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260758454|ref|ZP_05870802.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260762280|ref|ZP_05874623.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260884248|ref|ZP_05895862.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|261214497|ref|ZP_05928778.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|261219643|ref|ZP_05933924.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261222653|ref|ZP_05936934.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|261315687|ref|ZP_05954884.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261318125|ref|ZP_05957322.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261322531|ref|ZP_05961728.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261325575|ref|ZP_05964772.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
5K33]
gi|261752805|ref|ZP_05996514.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261755464|ref|ZP_05999173.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
3 str. 686]
gi|261758694|ref|ZP_06002403.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|261885343|ref|ZP_06009382.1| cold-shock family protein [Campylobacter fetus subsp. venerealis
str. Azul-94]
gi|265984558|ref|ZP_06097293.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|265989155|ref|ZP_06101712.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|265991570|ref|ZP_06104127.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265995406|ref|ZP_06107963.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|265998617|ref|ZP_06111174.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|294852832|ref|ZP_06793505.1| major cold shock protein [Brucella sp. NVSL 07-0026]
gi|306838489|ref|ZP_07471330.1| cold shock protein [Brucella sp. NF 2653]
gi|306844515|ref|ZP_07477104.1| cold shock protein [Brucella inopinata BO1]
gi|340791122|ref|YP_004756587.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|376275876|ref|YP_005116315.1| cold shock protein [Brucella canis HSK A52141]
gi|376281174|ref|YP_005155180.1| cold-shock family protein [Brucella suis VBI22]
gi|384225168|ref|YP_005616332.1| cold-shock family protein [Brucella suis 1330]
gi|23348366|gb|AAN30424.1| cold-shock family protein [Brucella suis 1330]
gi|62196534|gb|AAX74834.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616425|emb|CAJ11488.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
2308]
gi|161336271|gb|ABX62576.1| Hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
gi|163674491|gb|ABY38602.1| Hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
gi|189020200|gb|ACD72922.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|225641356|gb|ACO01270.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|256000093|gb|ACU48492.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260095989|gb|EEW79866.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
NCTC 8038]
gi|260151333|gb|EEW86427.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260155507|gb|EEW90587.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
4 str. 40]
gi|260668772|gb|EEX55712.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672712|gb|EEX59533.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675342|gb|EEX62163.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873776|gb|EEX80845.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|260916104|gb|EEX82965.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260921237|gb|EEX87890.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|260924732|gb|EEX91300.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261295221|gb|EEX98717.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261297348|gb|EEY00845.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261301555|gb|EEY05052.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
5K33]
gi|261304713|gb|EEY08210.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261738678|gb|EEY26674.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|261742558|gb|EEY30484.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261745217|gb|EEY33143.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
3 str. 686]
gi|262553241|gb|EEZ09075.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|262766519|gb|EEZ12308.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263002354|gb|EEZ14929.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093556|gb|EEZ17581.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
gi|264661352|gb|EEZ31613.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|264663150|gb|EEZ33411.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|294821421|gb|EFG38420.1| major cold shock protein [Brucella sp. NVSL 07-0026]
gi|306275126|gb|EFM56882.1| cold shock protein [Brucella inopinata BO1]
gi|306406453|gb|EFM62691.1| cold shock protein [Brucella sp. NF 2653]
gi|340559581|gb|AEK54819.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|343383348|gb|AEM18840.1| cold-shock family protein [Brucella suis 1330]
gi|358258773|gb|AEU06508.1| cold-shock family protein [Brucella suis VBI22]
gi|363404443|gb|AEW14738.1| cold shock protein [Brucella canis HSK A52141]
Length = 71
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG++K F KG GFI PD G +FVHIS ++ +P D K P + K
Sbjct: 2 AQTGQVKFFNTEKGFGFIKPDDGGADIFVHISAVQASGLPGLADNQKVSYETEPDRRGKG 61
Query: 118 -QAVHVEI 124
+AV++ I
Sbjct: 62 PKAVNITI 69
>gi|86356809|ref|YP_468701.1| cold shock protein [Rhizobium etli CFN 42]
gi|86280911|gb|ABC89974.1| cold shock protein [Rhizobium etli CFN 42]
Length = 69
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F +KG GFI PD G VFVHIS +E G G +V+Y L +
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRELTEGQKVRYDLVR-DKRSG 59
Query: 116 KNQAVHVE 123
KN A +++
Sbjct: 60 KNSADNLQ 67
>gi|381168624|ref|ZP_09877817.1| Cold shock protein, DNA binding [Phaeospirillum molischianum DSM
120]
gi|380682207|emb|CCG42635.1| Cold shock protein, DNA binding [Phaeospirillum molischianum DSM
120]
Length = 69
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNSTKGYGFIQPDDGTADVFVHISAVE 35
>gi|347530175|ref|YP_004836923.1| cold shock protein CspA [Sphingobium sp. SYK-6]
gi|345138857|dbj|BAK68466.1| cold shock protein CspA [Sphingobium sp. SYK-6]
Length = 266
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 34 SLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE- 92
+LP P R R E R L +G +K F KG GFI D G+P FVHIS +E
Sbjct: 175 ALPVP--EREERQERTPVRQLTGERASGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVER 232
Query: 93 -GCYVPLPGDEVKYRL 107
G GD + + L
Sbjct: 233 AGLASLQEGDRLDFEL 248
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
+G +K F KG GFI D G VFVHIS +E G G ++K+ L K
Sbjct: 108 SGTVKFFNGQKGFGFIVRDDGGEDVFVHISAVEQAGLTGLAEGQQLKFTLVDRGGK 163
>gi|16262519|ref|NP_435312.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
gi|334318597|ref|YP_004551156.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|384531875|ref|YP_005717479.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|407691522|ref|YP_006815106.1| hypothetical protein BN406_05017 [Sinorhizobium meliloti Rm41]
gi|14523127|gb|AAK64724.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
gi|333814051|gb|AEG06719.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|334099024|gb|AEG57033.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|407322697|emb|CCM71299.1| unnamed protein product [Sinorhizobium meliloti Rm41]
Length = 69
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIAPDDGSADVFVHISAVERAGMNSIVEGQKLGFEL 52
>gi|414343734|ref|YP_006985255.1| transcriptional regulator cold shock protein DNA-binding protein
[Gluconobacter oxydans H24]
gi|411029069|gb|AFW02324.1| transcriptional regulator cold shock protein DNA-binding protein
[Gluconobacter oxydans H24]
gi|453329270|dbj|GAC88619.1| cold shock protein [Gluconobacter thailandicus NBRC 3255]
Length = 68
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G FVHIS++E G + G ++ Y L
Sbjct: 1 MATGTVKWFNPTKGFGFIQPDNGGQDAFVHISELERAGIHTLNEGQQISYEL 52
>gi|421727712|ref|ZP_16166871.1| cold-shock protein [Klebsiella oxytoca M5al]
gi|423128458|ref|ZP_17116137.1| cold shock-like protein CspG [Klebsiella oxytoca 10-5250]
gi|376392940|gb|EHT05601.1| cold shock-like protein CspG [Klebsiella oxytoca 10-5250]
gi|410371461|gb|EKP26183.1| cold-shock protein [Klebsiella oxytoca M5al]
Length = 70
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRL 107
TG +K F SKG GFITPD+G VFVH S I+ G + L G +V++ +
Sbjct: 6 TGLVKWFNESKGFGFITPDNGSKDVFVHFSAIQSGGFKTLNEGQKVEFTI 55
>gi|323136343|ref|ZP_08071425.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322398417|gb|EFY00937.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 70
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
++ G +K F +KG GFI PD+G VFVHIS +E G + G +V Y L
Sbjct: 1 MQIGVVKWFNANKGFGFIQPDAGGADVFVHISALERAGLHGLAEGQKVGYELV 53
>gi|206895854|ref|YP_002247469.1| hypothetical protein COPRO5265_1161 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738471|gb|ACI17549.1| conserved domain protein [Coprothermobacter proteolyticus DSM 5265]
Length = 89
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKYRLCPIP 111
TG +K F KG+GFIT D GE VFVH S IEG + L GD+V++ + P
Sbjct: 25 TGTVKWFDAKKGYGFITRDDGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIVNGP 78
>gi|254249432|ref|ZP_04942752.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
gi|124875933|gb|EAY65923.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
Length = 67
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKYRLCPIPPKFE 115
++TG +K F +KG GFITPDSG +F H S+I G + G +V Y P +
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDSGGDDLFAHFSEIRGDGFKMLAEGQKVSYETKHGPKGLQ 60
Query: 116 KNQAV 120
+ V
Sbjct: 61 ASNIV 65
>gi|397569243|gb|EJK46623.1| hypothetical protein THAOC_34701, partial [Thalassiosira oceanica]
Length = 360
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 53 ALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL 98
+ + +++G++K F +G GFI+PD G VFVHIS ++ Y PL
Sbjct: 289 GMSDGIKSGRVKRFNEERGFGFISPDGGGRDVFVHISAVD--YEPL 332
>gi|329850898|ref|ZP_08265743.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
gi|328841213|gb|EGF90784.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
Length = 66
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
+ TG +K F +KG GFI PD+G VFVHI+ +E G G ++ Y L K
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDAGGSDVFVHITAVERAGLRGLNDGQKITYELATEKGK 58
>gi|237747860|ref|ZP_04578340.1| cold-shock DNA-binding protein family protein [Oxalobacter
formigenes OXCC13]
gi|229379222|gb|EEO29313.1| cold-shock DNA-binding protein family protein [Oxalobacter
formigenes OXCC13]
Length = 78
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKY 105
+ETG +K F SKG GFITPD+ +F H S+I+ G + L G +VK+
Sbjct: 12 METGTVKWFNNSKGFGFITPDNNGADLFAHFSEIQAGGFKSLEEGQKVKF 61
>gi|227819992|ref|YP_002823963.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
gi|378763445|ref|YP_005192061.1| Cold shock-like protein cspA [Sinorhizobium fredii HH103]
gi|398351195|ref|YP_006396659.1| cold shock protein CspA [Sinorhizobium fredii USDA 257]
gi|36958641|gb|AAQ87109.1| Cold shock protein cspA [Sinorhizobium fredii NGR234]
gi|227338991|gb|ACP23210.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
gi|365183073|emb|CCE99922.1| Cold shock-like protein cspA [Sinorhizobium fredii HH103]
gi|390126521|gb|AFL49902.1| cold shock protein CspA [Sinorhizobium fredii USDA 257]
Length = 69
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVHIS +E G + G +V Y +
Sbjct: 1 MSSGTVKWFNSTKGFGFIQPDDGSTDVFVHISAVERAGLRSLVEGQKVTYDIV 53
>gi|407801781|ref|ZP_11148624.1| cold-shock domain-contain protein [Alcanivorax sp. W11-5]
gi|407024098|gb|EKE35842.1| cold-shock domain-contain protein [Alcanivorax sp. W11-5]
Length = 67
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL--PGDEVKYRLCPIP 111
+ TG +K F SKG GFIT D G VFVH S I+G G +V Y + P
Sbjct: 1 MATGTVKWFNESKGFGFITQDDGGADVFVHFSAIQGTGFKTLQEGQKVTYEIQQGP 56
>gi|388500632|gb|AFK38382.1| unknown [Medicago truncatula]
Length = 134
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TGK+K F KG GFITPD G +FVH S I +G G+ V+Y++
Sbjct: 7 TGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQI 56
>gi|254418731|ref|ZP_05032455.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
gi|196184908|gb|EDX79884.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
Length = 70
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
TG +K F +KG+GFI PD G VFVHIS +EG
Sbjct: 3 TGTVKWFNPTKGYGFIQPDDGGKDVFVHISAVEGA 37
>gi|307726451|ref|YP_003909664.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586976|gb|ADN60373.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
Length = 67
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD G +F H S+I+G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEIKG 36
>gi|149202227|ref|ZP_01879200.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
gi|149144325|gb|EDM32356.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
Length = 68
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNATKGYGFIAPDGGGKDVFVHISAVE 35
>gi|107027431|ref|YP_624942.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|105896805|gb|ABF79969.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU
1054]
Length = 67
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K F +KG GFITPDSG +F H S+I +G G +V Y P +
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDSGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKNGPKGLQ 60
Query: 116 KNQAV 120
+ V
Sbjct: 61 ASNIV 65
>gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21]
gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21]
Length = 263
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S L + +I ++E+ R L TG +K F KG GF+T D G+P FVHI
Sbjct: 167 SAQDLQVVGDVIAVEAKSEA-PRRELTGEKATGTVKFFNSMKGFGFLTRDDGQPDAFVHI 225
Query: 89 SDIE 92
S +E
Sbjct: 226 SAVE 229
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 58 VETGK--IKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
V TGK +K F KG GFI ++G +FVHIS +E G G E+++ L K
Sbjct: 106 VGTGKGTVKFFNSQKGFGFIQQETGGEDIFVHISAVERAGLEGLAEGQELEFNLVDRGGK 165
>gi|209520217|ref|ZP_03268987.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|209499333|gb|EDZ99418.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
Length = 67
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDNGGDDLFAHFSEISG 36
>gi|408376967|ref|ZP_11174570.1| cold shock protein [Agrobacterium albertimagni AOL15]
gi|407748926|gb|EKF60439.1| cold shock protein [Agrobacterium albertimagni AOL15]
Length = 69
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G P FVHIS +E G + G ++ Y +
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGPDAFVHISAVERSGMREIVEGQKLAYDM 52
>gi|149195695|ref|ZP_01872752.1| putative cold-shock DNA-binding domain protein [Lentisphaera
araneosa HTCC2155]
gi|149141157|gb|EDM29553.1| putative cold-shock DNA-binding domain protein [Lentisphaera
araneosa HTCC2155]
Length = 67
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLP-GDEVKYRL 107
+ETG +K F KG GFITP+SG+ +FVH ++I+ G + L G +V+Y +
Sbjct: 1 METGTVKWFADDKGFGFITPNSGDKDLFVHHTEIQTGGFKSLAEGQKVEYEV 52
>gi|408378450|ref|ZP_11176047.1| cold shock protein [Agrobacterium albertimagni AOL15]
gi|407747587|gb|EKF59106.1| cold shock protein [Agrobacterium albertimagni AOL15]
Length = 69
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G P FVHIS +E G + G ++ Y +
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGPDAFVHISAVERAGMREIVEGQKLSYDM 52
>gi|190890873|ref|YP_001977415.1| cold shock protein [Rhizobium etli CIAT 652]
gi|218463533|ref|ZP_03503624.1| cold shock protein [Rhizobium etli Kim 5]
gi|218507653|ref|ZP_03505531.1| cold shock protein [Rhizobium etli Brasil 5]
gi|218514329|ref|ZP_03511169.1| cold shock protein [Rhizobium etli 8C-3]
gi|218663162|ref|ZP_03519092.1| cold shock protein [Rhizobium etli IE4771]
gi|218671488|ref|ZP_03521158.1| cold shock protein [Rhizobium etli GR56]
gi|417105062|ref|ZP_11961584.1| cold shock protein [Rhizobium etli CNPAF512]
gi|190696152|gb|ACE90237.1| cold shock protein [Rhizobium etli CIAT 652]
gi|327190699|gb|EGE57781.1| cold shock protein [Rhizobium etli CNPAF512]
Length = 69
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVHIS +E G G +V+Y L
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRELTEGQKVRYDLV 53
>gi|86139271|ref|ZP_01057841.1| cold shock family protein [Roseobacter sp. MED193]
gi|85824115|gb|EAQ44320.1| cold shock family protein [Roseobacter sp. MED193]
Length = 68
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG GFI PD+G VFVHIS +E + D K P + +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDNGGSDVFVHISAVERSGLTGLADNQKVSYEMQPGRDGRE 60
Query: 118 QAVHVEIV 125
AV + ++
Sbjct: 61 SAVDLALL 68
>gi|85704998|ref|ZP_01036098.1| cold shock family protein [Roseovarius sp. 217]
gi|149202366|ref|ZP_01879339.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
gi|85670320|gb|EAQ25181.1| cold shock family protein [Roseovarius sp. 217]
gi|149144464|gb|EDM32495.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
Length = 68
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPDGGGKDVFVHISAVE 35
>gi|92117563|ref|YP_577292.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800457|gb|ABE62832.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 67
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG GFI PDSG VFVHIS +E
Sbjct: 3 TGTVKWFNATKGFGFIQPDSGGKDVFVHISAVE 35
>gi|159185613|ref|NP_357478.2| cold shock protein [Agrobacterium fabrum str. C58]
gi|335034447|ref|ZP_08527795.1| cold shock protein [Agrobacterium sp. ATCC 31749]
gi|418299616|ref|ZP_12911448.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|424911951|ref|ZP_18335328.1| cold shock protein [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|159140747|gb|AAK90263.2| cold shock protein [Agrobacterium fabrum str. C58]
gi|333794043|gb|EGL65392.1| cold shock protein [Agrobacterium sp. ATCC 31749]
gi|355534769|gb|EHH04068.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|392847982|gb|EJB00505.1| cold shock protein [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 69
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGMRSLNDGQKISYEIV 53
>gi|420155731|ref|ZP_14662587.1| cold shock-like protein CspG [Clostridium sp. MSTE9]
gi|394758708|gb|EJF41570.1| cold shock-like protein CspG [Clostridium sp. MSTE9]
Length = 70
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ G +K F KG GFIT D+G VFVH S I EG GD+V + P
Sbjct: 1 MNNGTVKWFNSEKGFGFITNDNGSDDVFVHFSAIVSEGYKSLNEGDKVTFDTEQDPKNSR 60
Query: 116 KNQAVHVEIV 125
K +A +V +
Sbjct: 61 KLRAANVRVA 70
>gi|384540273|ref|YP_005724356.1| probabable CspA5 cold shock protein transcriptional regulator
[Sinorhizobium meliloti SM11]
gi|407691399|ref|YP_006814983.1| hypothetical protein BN406_04894 [Sinorhizobium meliloti Rm41]
gi|336035616|gb|AEH81547.1| probabable CspA5 cold shock protein transcriptional regulator
[Sinorhizobium meliloti SM11]
gi|407322574|emb|CCM71176.1| unnamed protein product [Sinorhizobium meliloti Rm41]
Length = 67
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ GD+V Y + K K++A
Sbjct: 3 TGTVKFFNDDKGFGFITPENGGTDVFVHVSALQRGGSLKEGDKVSYEIGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|334131058|ref|ZP_08504827.1| Cold shock-like protein CspD [Methyloversatilis universalis FAM5]
gi|333443887|gb|EGK71845.1| Cold shock-like protein CspD [Methyloversatilis universalis FAM5]
Length = 67
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLP-GDEVKYRLCPIPPKFE 115
+ TG +K F SKG+GFITPD G +F H S I+ G + L G +V + + P +
Sbjct: 1 MATGTVKWFNDSKGYGFITPDDGSEDLFAHFSAIQMGGFKTLKEGQKVSFDVTQGP---K 57
Query: 116 KNQAVHVE 123
QA +++
Sbjct: 58 GKQAANIQ 65
>gi|163851319|ref|YP_001639362.1| DNA-binding cold-shock protein [Methylobacterium extorquens PA1]
gi|163662924|gb|ABY30291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
Length = 69
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG+GFI PD G VFVHIS +E G G +V Y + I + K
Sbjct: 3 TGTVKWFNGTKGYGFIQPDDGGKDVFVHISAVERAGLRELAEGQKVSYEV-EIDRRSGKE 61
Query: 118 QAVHVEI 124
A +++
Sbjct: 62 SAGQLQV 68
>gi|407973082|ref|ZP_11153995.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
gi|407431853|gb|EKF44524.1| cold-shock DNA-binding protein family protein [Nitratireductor
indicus C115]
Length = 69
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +SKG+GFI PD G VFVHIS +E G + G ++ + + + KN
Sbjct: 4 GTVKFFNQSKGYGFIAPDDGGNDVFVHISAVERAGMHSLTEGQKIGFDVVQ-DKRSGKNA 62
Query: 119 AVHVEIV 125
A +++ V
Sbjct: 63 ADNLQAV 69
>gi|83717433|ref|YP_439199.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|167577641|ref|ZP_02370515.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis TXDOH]
gi|167615783|ref|ZP_02384418.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis Bt4]
gi|257142321|ref|ZP_05590583.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|83651258|gb|ABC35322.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis E264]
Length = 67
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
+ETG +K F +KG GFITPDSG +F H S+I
Sbjct: 1 METGTVKWFNETKGFGFITPDSGGDDLFAHFSEI 34
>gi|420244268|ref|ZP_14748077.1| cold shock protein [Rhizobium sp. CF080]
gi|398055017|gb|EJL47110.1| cold shock protein [Rhizobium sp. CF080]
Length = 69
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVH+S +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNSTKGFGFIQPDDGATDVFVHVSAVERAGMSSLTEGQKISYEIV 53
>gi|339480442|ref|ZP_08656101.1| cold-shock DNA-binding protein family protein [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 74
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K + + +G+G+ITPD G +FVH + IE G + G++V+Y L K++
Sbjct: 1 MKTGTVKIWQKERGYGYITPDDGGDDIFVHFNGIEMDGFKSLIQGEKVEYVLVQGHQKYQ 60
>gi|430003871|emb|CCF19662.1| Cold shock protein, DNA binding [Rhizobium sp.]
Length = 69
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD+G VFVH+S +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNSTKGFGFIQPDNGSQDVFVHVSAVERAGMRGLTEGQKISYDIV 53
>gi|384917390|ref|ZP_10017514.1| cold shock family protein [Citreicella sp. 357]
gi|384468716|gb|EIE53137.1| cold shock family protein [Citreicella sp. 357]
Length = 68
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG+GFI P++G +FVHIS +E + D K + +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPENGNKDIFVHISAVERSGLTGLQDNQKVSFELQSGRDGRE 60
Query: 118 QAVHVEIV 125
AV++E++
Sbjct: 61 SAVNIELL 68
>gi|170745542|ref|YP_001766999.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170659143|gb|ACB28197.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNETKGYGFIQPDDGGKDVFVHISAVE 35
>gi|83942901|ref|ZP_00955361.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|83954075|ref|ZP_00962795.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83841112|gb|EAP80282.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83845909|gb|EAP83786.1| cold shock family protein [Sulfitobacter sp. EE-36]
Length = 68
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F +KG+GFI P+ G VFVHIS +E + DE K + + A
Sbjct: 3 TGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVERSGLTGLADEQKVSFEMSEGRDGRQMA 62
Query: 120 VHVEIV 125
+E++
Sbjct: 63 TDLELL 68
>gi|440223457|ref|YP_007336853.1| cold-shock protein CspC [Rhizobium tropici CIAT 899]
gi|440042329|gb|AGB74307.1| cold-shock protein CspC [Rhizobium tropici CIAT 899]
Length = 69
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNSTKGFGFIQPDDGSTDVFVHISAVERAGMRSLNDGQKITYDIV 53
>gi|254253023|ref|ZP_04946341.1| Cold shock protein [Burkholderia dolosa AUO158]
gi|124895632|gb|EAY69512.1| Cold shock protein [Burkholderia dolosa AUO158]
Length = 67
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDNGGDDLFAHFSEIRG 36
>gi|116617815|ref|YP_818186.1| cold-shock DNA-binding protein family protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227432308|ref|ZP_03914301.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336292|ref|YP_005174067.1| cold-shock DNA-binding protein family protein [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|116096662|gb|ABJ61813.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|227351914|gb|EEJ42147.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644258|gb|AET30101.1| cold-shock DNA-binding protein family protein [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 74
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K + + +G+G+ITPD G VFVH + D++G + G++V Y L ++
Sbjct: 1 MKTGTVKIWQKERGYGYITPDEGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQGYKSYQ 60
Query: 116 KNQ 118
Q
Sbjct: 61 AAQ 63
>gi|300698107|ref|YP_003748768.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum CFBP2957]
gi|299074831|emb|CBJ54398.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum CFBP2957]
Length = 67
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ETG +K F SKG GFITPD+G +F H S+++G
Sbjct: 1 METGIVKWFNDSKGFGFITPDAGGNDLFAHFSEVQG 36
>gi|389688268|ref|ZP_10178059.1| cold shock protein [Microvirga sp. WSM3557]
gi|388590890|gb|EIM31171.1| cold shock protein [Microvirga sp. WSM3557]
Length = 69
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD+G VFVHIS +E
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVFVHISAVE 35
>gi|260770385|ref|ZP_05879318.1| predicted membrane protein [Vibrio furnissii CIP 102972]
gi|260615723|gb|EEX40909.1| predicted membrane protein [Vibrio furnissii CIP 102972]
Length = 197
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+GKI E+ +KG+GFIT D+ +F HISD++G
Sbjct: 4 SGKISEWNDAKGYGFITVDNYRGKIFFHISDVQG 37
>gi|404254742|ref|ZP_10958710.1| cold-shock DNA-binding domain-containing protein [Sphingomonas sp.
PAMC 26621]
Length = 277
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRL 107
R+L TG +K F KG GFI D G+P FVHIS +E G L GD +++ L
Sbjct: 202 QRSLTGEKATGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERGGMTSLNEGDRLEFEL 260
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GF+ D G VFVHIS +E
Sbjct: 107 TGVVKFFNGQKGFGFVVRDDGGEDVFVHISAVE 139
>gi|375132277|ref|YP_005048685.1| membrane protein [Vibrio furnissii NCTC 11218]
gi|315181452|gb|ADT88365.1| predicted membrane protein [Vibrio furnissii NCTC 11218]
Length = 197
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+GKI E+ +KG+GFIT D+ +F HISD++G
Sbjct: 4 SGKISEWNDAKGYGFITVDNYRGKIFFHISDVQG 37
>gi|389681960|ref|ZP_10173303.1| cold-shock DNA-binding domain protein [Pseudomonas chlororaphis O6]
gi|388553834|gb|EIM17084.1| cold-shock DNA-binding domain protein [Pseudomonas chlororaphis O6]
Length = 201
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 4 SPLPFENKKPA-LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+P+P +PA L S + + LH + SP ++T +SNR +TG
Sbjct: 84 APMPVIAGQPAVLFSLVTAAIAVLLHLAVSFYKSSPS-ANTSQTYDMSNR------DTGT 136
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
+K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 137 VKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 180
>gi|394988235|ref|ZP_10381073.1| RNA chaperone, transcription antiterminator,affects expression of
rpoS and uspA [Sulfuricella denitrificans skB26]
gi|393792693|dbj|GAB70712.1| RNA chaperone, transcription antiterminator,affects expression of
rpoS and uspA [Sulfuricella denitrificans skB26]
Length = 67
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLP-GDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S I+ G + L G +V++ + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAIQMGGFKTLKEGQKVQFEITQGP 56
>gi|409402267|ref|ZP_11251857.1| cold shock protein [Acidocella sp. MX-AZ02]
gi|409129127|gb|EKM98994.1| cold shock protein [Acidocella sp. MX-AZ02]
Length = 69
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
G +K F +KG+GFI+P++G P VFVHIS +E G G +VK+
Sbjct: 4 GTVKFFNETKGYGFISPETGGPDVFVHISAVERAGMRSLNEGQKVKF 50
>gi|399074182|ref|ZP_10750860.1| cold shock protein [Caulobacter sp. AP07]
gi|398040685|gb|EJL33781.1| cold shock protein [Caulobacter sp. AP07]
Length = 201
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 14 ALSSPMLSPQEPHLHSNNTL----SLPSPIITRRTRTESISNRALQNPVETGKIKEFCRS 69
A S+PM P+ L L S I + R E + P E K+K F R+
Sbjct: 91 AASAPMERPKRAFGDGGMGLRRDHGLRSGIDSGRQALEPV------GPAERAKVKWFNRT 144
Query: 70 KGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
KG+GF+ D +FVHI + G PGD+V R P
Sbjct: 145 KGYGFVVRDGQPGDIFVHIETLRRGGLEDLQPGDDVMVRFAEGP 188
>gi|13488430|ref|NP_109437.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14028184|dbj|BAB54776.1| cold shock protein [Mesorhizobium loti MAFF303099]
Length = 69
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PDSG FVHIS +E G + G ++ Y +
Sbjct: 3 TGTVKWFNSTKGFGFIQPDSGGADAFVHISAVERAGMREIVEGQKIGYEM 52
>gi|424920263|ref|ZP_18343626.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392849278|gb|EJB01800.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 66
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
+ G +K F + KG GFITPD+G VFVHIS ++G + G V Y +
Sbjct: 1 MANGTVKFFNQDKGFGFITPDNGGQDVFVHISAVQGGSLR-DGQAVSYEV 49
>gi|338737920|ref|YP_004674882.1| cold-shock protein [Hyphomicrobium sp. MC1]
gi|337758483|emb|CCB64308.1| major cold shock protein [Hyphomicrobium sp. MC1]
Length = 69
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F KG+GFI PD G VFVHIS +E
Sbjct: 1 MQTGTVKWFNGQKGYGFIQPDDGGNDVFVHISAVE 35
>gi|167566047|ref|ZP_02358963.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
EO147]
gi|167573125|ref|ZP_02365999.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
C6786]
Length = 67
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFI+PDSG +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFISPDSGGDDLFAHFSEIRG 36
>gi|397686571|ref|YP_006523890.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 10701]
gi|395808127|gb|AFN77532.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 10701]
Length = 206
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
ETG +K F SKG GFI+ DSG+ VFVH I EG V + G V+Y
Sbjct: 141 ETGTVKWFNTSKGFGFISRDSGDD-VFVHFRAIRGEGHRVLVEGQRVEY 188
>gi|254512165|ref|ZP_05124232.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
bacterium KLH11]
gi|221535876|gb|EEE38864.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
bacterium KLH11]
Length = 68
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPDEGGKDVFVHISAVE 35
>gi|158424300|ref|YP_001525592.1| cold shock DNA-binding domain-containing protein [Azorhizobium
caulinodans ORS 571]
gi|158331189|dbj|BAF88674.1| cold-shock DNA-binding domain [Azorhizobium caulinodans ORS 571]
Length = 117
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKYRL 107
P+ TG +K F KG GFI PD G FVHIS +E +P G +V Y L
Sbjct: 47 PMTTGTVKWFNPEKGFGFIAPDDGGADAFVHISAVERAGLPPLREGQKVNYDL 99
>gi|15965864|ref|NP_386217.1| cold shock transcription regulator protein [Sinorhizobium meliloti
1021]
gi|150397206|ref|YP_001327673.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|334316806|ref|YP_004549425.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|384529995|ref|YP_005714083.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|384535662|ref|YP_005719747.1| cold shock transcription regulator protein [Sinorhizobium meliloti
SM11]
gi|407721142|ref|YP_006840804.1| hypothetical protein BN406_01933 [Sinorhizobium meliloti Rm41]
gi|418403662|ref|ZP_12977146.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|433613892|ref|YP_007190690.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|15075133|emb|CAC46690.1| Probable cold shock transcription regulator [Sinorhizobium meliloti
1021]
gi|150028721|gb|ABR60838.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|333812171|gb|AEG04840.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|334095800|gb|AEG53811.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|336032554|gb|AEH78486.1| cold shock transcription regulator protein [Sinorhizobium meliloti
SM11]
gi|359502419|gb|EHK74997.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|407319374|emb|CCM67978.1| unnamed protein product [Sinorhizobium meliloti Rm41]
gi|429552082|gb|AGA07091.1| Cold shock protein [Sinorhizobium meliloti GR4]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVHIS +E G G +V + L
Sbjct: 1 MASGTVKWFNSTKGFGFIQPDDGAADVFVHISAVERAGLSTLKDGQKVSFELT 53
>gi|271961744|ref|YP_003335940.1| cold-shock DNA-binding domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270504919|gb|ACZ83197.1| putative cold-shock DNA-binding domain protein [Streptosporangium
roseum DSM 43021]
Length = 67
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLC 108
G +K F KG GFI PD G P VFVH S+I+G Y L G V++ +
Sbjct: 4 GTVKWFNAEKGFGFIAPDGGAPDVFVHFSEIQGNGYRSLEDGQRVEFEIT 53
>gi|229526567|ref|ZP_04415971.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
gi|229336725|gb|EEO01743.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
Length = 72
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
TG +K F SKG GFITPDSG VFVH + I
Sbjct: 8 TGSVKWFNESKGFGFITPDSGGSDVFVHFNSI 39
>gi|222082370|ref|YP_002541735.1| cold shock protein [Agrobacterium radiobacter K84]
gi|398378931|ref|ZP_10537081.1| cold shock protein [Rhizobium sp. AP16]
gi|221727049|gb|ACM30138.1| cold shock protein [Agrobacterium radiobacter K84]
gi|397723874|gb|EJK84357.1| cold shock protein [Rhizobium sp. AP16]
Length = 67
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ G++V Y L K K++A
Sbjct: 3 TGTVKFFNEDKGFGFITPENGGTDVFVHVSALQRGGSLREGEKVSYELGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|409439076|ref|ZP_11266138.1| Cold shock protein cspA [Rhizobium mesoamericanum STM3625]
gi|408749193|emb|CCM77316.1| Cold shock protein cspA [Rhizobium mesoamericanum STM3625]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F +KG GFI PD G VFVHIS +E G G ++ Y L K
Sbjct: 1 MSSGTVKWFNSTKGFGFIQPDDGSTDVFVHISAVERAGLGNLSDGQKITYDLVR-DAKSG 59
Query: 116 KNQA 119
KN A
Sbjct: 60 KNSA 63
>gi|197104417|ref|YP_002129794.1| cold-shock protein [Phenylobacterium zucineum HLK1]
gi|196477837|gb|ACG77365.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 250
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
+ +G +K F +KG GFI PD G VFVHIS + G GD+V+Y L
Sbjct: 56 MASGTVKWFNTAKGFGFIQPDDGGQDVFVHISAVAQAGLDALNEGDQVEYEL 107
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+G +K F +KG GFI P+ G +FVHIS +E
Sbjct: 183 SGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVE 215
>gi|150377277|ref|YP_001313872.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|433616858|ref|YP_007193653.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|150031824|gb|ABR63939.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|429555105|gb|AGA10054.1| Cold shock protein [Sinorhizobium meliloti GR4]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDDGSADVFVHISAVERAGMNSIVEGQKLGFEL 52
>gi|154508286|ref|ZP_02043928.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
17982]
gi|293194037|ref|ZP_06609919.1| putative cold shock protein [Actinomyces odontolyticus F0309]
gi|153797920|gb|EDN80340.1| cold-shock DNA-binding domain protein [Actinomyces odontolyticus
ATCC 17982]
gi|292819791|gb|EFF78800.1| putative cold shock protein [Actinomyces odontolyticus F0309]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI---EGCYVPLPGDEVKYRLCPIPPKFEK 116
TG IK F +KG GFITPD VFVH S+I G L G++V+Y P +
Sbjct: 3 TGTIKWFNDAKGFGFITPDDESGDVFVHYSNIIGQSGRRTLLEGEKVEYEAIEGPKGLQA 62
Query: 117 NQAVHVE 123
E
Sbjct: 63 MNVARAE 69
>gi|149916334|ref|ZP_01904854.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
gi|149809788|gb|EDM69640.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
Length = 68
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPDEGGKDVFVHISAVE 35
>gi|23012538|ref|ZP_00052598.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
gi|452964561|gb|EME69599.1| cold shock protein [Magnetospirillum sp. SO-1]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
G +K F +KG GFI PD+G P VFVHIS +E G G +V + P K K
Sbjct: 3 NGSVKWFNSTKGFGFIAPDNGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPRK-GKT 61
Query: 118 QAVHVEIV 125
AV+++++
Sbjct: 62 SAVNLKVL 69
>gi|452124507|ref|ZP_21937091.1| cold-shock protein [Bordetella holmesii F627]
gi|452127899|ref|ZP_21940478.1| cold-shock protein [Bordetella holmesii H558]
gi|451923737|gb|EMD73878.1| cold-shock protein [Bordetella holmesii F627]
gi|451926114|gb|EMD76250.1| cold-shock protein [Bordetella holmesii H558]
Length = 81
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
NP TG +K F +KG GFITPD G +F H S I+ G G +V + P
Sbjct: 13 NPKSTGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVAFETIQGP-- 70
Query: 114 FEKNQAVHV 122
+ QA+++
Sbjct: 71 -KGKQALNI 78
>gi|404320830|ref|ZP_10968763.1| cold shock protein [Ochrobactrum anthropi CTS-325]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI P++G FVHIS +E G Y G ++ Y L
Sbjct: 1 MNTGTVKWFNTAKGFGFIQPENGGGDAFVHISAVERAGMYSLTEGQKLTYDL 52
>gi|167565863|ref|ZP_02358779.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
EO147]
gi|167574414|ref|ZP_02367288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
C6786]
Length = 67
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEIRG 36
>gi|440224548|ref|YP_007337944.1| cold-shock protein CspC [Rhizobium tropici CIAT 899]
gi|440043420|gb|AGB75398.1| cold-shock protein CspC [Rhizobium tropici CIAT 899]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNSTKGFGFIQPDDGSTDVFVHISAVERAGMRSLNDGQKITYDIV 53
>gi|393760442|ref|ZP_10349252.1| cold shock protein [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|424778143|ref|ZP_18205094.1| cold shock protein [Alcaligenes sp. HPC1271]
gi|393161299|gb|EJC61363.1| cold shock protein [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|422886971|gb|EKU29382.1| cold shock protein [Alcaligenes sp. HPC1271]
Length = 72
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
ETG +K F KG+GFI+PD+G +FVH SDI G
Sbjct: 6 TETGIVKWFNNEKGYGFISPDNGGKDLFVHHSDILGT 42
>gi|378764204|ref|YP_005192820.1| Cold shock-like protein cspA [Sinorhizobium fredii HH103]
gi|365183832|emb|CCF00681.1| Cold shock-like protein cspA [Sinorhizobium fredii HH103]
Length = 69
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLNSIVEGQKLGFEL 52
>gi|384531646|ref|YP_005717250.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|333813822|gb|AEG06490.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 67
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ GD+V Y + K K++A
Sbjct: 3 TGTVKFFNDDKGFGFITPENGGTDVFVHVSALQRGGSLKEGDKVSYEVGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|344344096|ref|ZP_08774961.1| cold-shock DNA-binding domain protein [Marichromatium purpuratum
984]
gi|343804380|gb|EGV22281.1| cold-shock DNA-binding domain protein [Marichromatium purpuratum
984]
Length = 68
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG+GF+ PD + VFVH S D+EG G +V++ L P
Sbjct: 3 TGVVKWFNNAKGYGFVQPDGRDEDVFVHFSAIDMEGYKTLREGQKVQFELNQGP------ 56
Query: 118 QAVHVEIVH 126
+ +H VH
Sbjct: 57 KGLHAAKVH 65
>gi|420239162|ref|ZP_14743506.1| cold shock protein [Rhizobium sp. CF080]
gi|398082325|gb|EJL73080.1| cold shock protein [Rhizobium sp. CF080]
Length = 69
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMSSIVEGQKLGFEL 52
>gi|372275884|ref|ZP_09511920.1| RNA chaperone/anti-terminator [Pantoea sp. SL1_M5]
Length = 70
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFITPD G VFVH S I+G
Sbjct: 6 TGLVKWFNSDKGFGFITPDDGSKDVFVHFSAIQG 39
>gi|307944227|ref|ZP_07659568.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
TrichSKD4]
gi|307772573|gb|EFO31793.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
TrichSKD4]
Length = 289
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ P + G +K F KG GFITPD G+ VFVHIS +E G G V + P
Sbjct: 207 RGPRQNGIVKFFKSDKGFGFITPDEGDADVFVHISAVERSGMTTLDSGQRVSFETEP 263
>gi|294011151|ref|YP_003544611.1| cold shock protein CspA [Sphingobium japonicum UT26S]
gi|390167199|ref|ZP_10219197.1| cold shock protein CspA [Sphingobium indicum B90A]
gi|292674481|dbj|BAI95999.1| cold shock protein CspA [Sphingobium japonicum UT26S]
gi|389590245|gb|EIM68245.1| cold shock protein CspA [Sphingobium indicum B90A]
Length = 70
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F KG+GFI PD G P FVHIS +E G D V Y L
Sbjct: 5 GTVKFFNADKGYGFIAPDDGSPDAFVHISAVERGGLATLREKDRVSYDL 53
>gi|289209718|ref|YP_003461784.1| cold-shock DNA-binding domain-containing protein
[Thioalkalivibrio sp. K90mix]
gi|288945349|gb|ADC73048.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
K90mix]
Length = 67
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 23/36 (63%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ TG +K F SKG GFITPD G VFVH S I G
Sbjct: 1 MNTGVVKWFNESKGFGFITPDDGGKDVFVHFSAISG 36
>gi|399526647|ref|ZP_10766406.1| cold-shock DNA-binding domain protein [Actinomyces sp. ICM39]
gi|398362817|gb|EJN46487.1| cold-shock DNA-binding domain protein [Actinomyces sp. ICM39]
Length = 69
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI---EGCYVPLPGDEVKYRLCPIPPKFEK 116
TG IK F +KG GFITPD VFVH S+I G L G++V+Y P +
Sbjct: 3 TGTIKWFNDAKGFGFITPDDESGDVFVHYSNIVGQSGRRTLLEGEKVEYEAIEGPKGLQA 62
Query: 117 NQAVHVE 123
E
Sbjct: 63 MNVARAE 69
>gi|260575739|ref|ZP_05843736.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
gi|259022137|gb|EEW25436.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
Length = 68
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNSTKGYGFIAPDDGGKDVFVHISAVE 35
>gi|114797127|ref|YP_758844.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
gi|114737301|gb|ABI75426.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
Length = 69
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TGK+K F KG GFI PD G +FVHIS +E
Sbjct: 1 MATGKVKWFNDQKGFGFIKPDDGGADIFVHISAVE 35
>gi|260433151|ref|ZP_05787122.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416979|gb|EEX10238.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 68
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPDEGGKDVFVHISAVE 35
>gi|390436212|ref|ZP_10224750.1| cold shock-like protein cspA [Pantoea agglomerans IG1]
Length = 70
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFITPD G VFVH S I+G
Sbjct: 6 TGLVKWFNSDKGFGFITPDDGSKDVFVHFSAIQG 39
>gi|346992229|ref|ZP_08860301.1| cold shock protein [Ruegeria sp. TW15]
Length = 68
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPDEGGKDVFVHISAVE 35
>gi|296446940|ref|ZP_06888875.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296255507|gb|EFH02599.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 69
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ G +K F +KG GFI PD+G VFVHIS +E G G ++++ L
Sbjct: 1 MNIGTVKWFNATKGFGFIQPDNGGADVFVHISAVERAGMQTLAEGQKIQFDLV 53
>gi|296111917|ref|YP_003622299.1| Cold-shock DNA-binding domain protein [Leuconostoc kimchii IMSNU
11154]
gi|339490808|ref|YP_004705313.1| putative Cold-shock DNA-binding domain-containing protein
[Leuconostoc sp. C2]
gi|295833449|gb|ADG41330.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc kimchii
IMSNU 11154]
gi|338852480|gb|AEJ30690.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc sp. C2]
Length = 74
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K + + +G+G+ITPD G VFVH + D++G G++V Y+L ++
Sbjct: 1 MKTGTVKIWQKERGYGYITPDEGGEDVFVHFNGIDMDGFKSLNQGEKVTYQLV---QGYK 57
Query: 116 KNQAVHVE 123
QA V+
Sbjct: 58 NYQAAQVQ 65
>gi|83944376|ref|ZP_00956831.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|83953418|ref|ZP_00962140.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83842386|gb|EAP81554.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83844920|gb|EAP82802.1| cold shock family protein [Sulfitobacter sp. EE-36]
Length = 68
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G +FVHIS +E
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDGGGKDIFVHISAVE 35
>gi|444378822|ref|ZP_21178012.1| Cold shock protein CspD [Enterovibrio sp. AK16]
gi|443677164|gb|ELT83855.1| Cold shock protein CspD [Enterovibrio sp. AK16]
Length = 73
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI PD G+ +F H S I +G G V Y + P +
Sbjct: 1 MATGTVKWFNNAKGFGFICPDEGDGDIFAHYSTIQMDGYRTLKAGQTVNYEVQEGPKGYH 60
Query: 116 KNQAVHVE 123
+Q V VE
Sbjct: 61 ASQIVPVE 68
>gi|256391097|ref|YP_003112661.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256357323|gb|ACU70820.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM
44928]
Length = 67
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TGK+K F KG GFI D G P VFVH S I G YR E+NQA
Sbjct: 3 TGKVKWFNGEKGFGFIEQDGGGPDVFVHFSAISGS---------GYR------NLEENQA 47
Query: 120 VHVEIVH 126
V +
Sbjct: 48 VEFNVTQ 54
>gi|170736784|ref|YP_001778044.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169818972|gb|ACA93554.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
Length = 67
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F +KG GFITPDSG +F H S+I G
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDSGGDDLFAHFSEIRG 36
>gi|344942596|ref|ZP_08781883.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
SV96]
gi|344259883|gb|EGW20155.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
SV96]
Length = 68
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLP-GDEVKYRL 107
+ TG +K F +KG GFI+P G VFVH S I +G Y L G VKY +
Sbjct: 1 MATGTVKWFNEAKGFGFISPSDGSADVFVHFSAIASDGGYRTLAEGQAVKYDV 53
>gi|386022248|ref|YP_005940273.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 4166]
gi|327482221|gb|AEA85531.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 4166]
Length = 235
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G +K + KG GFI P+ G +FVHIS + G PL GD V +
Sbjct: 5 GTLKSWNDDKGFGFIRPEQGGEELFVHISAVHGERRPLVGDRVLF 49
>gi|269139181|ref|YP_003295882.1| cold shock protein [Edwardsiella tarda EIB202]
gi|387867787|ref|YP_005699256.1| Cold shock protein [Edwardsiella tarda FL6-60]
gi|267984842|gb|ACY84671.1| cold shock protein [Edwardsiella tarda EIB202]
gi|304559100|gb|ADM41764.1| Cold shock protein [Edwardsiella tarda FL6-60]
Length = 69
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
+TG++K F SKG GFITP G VFVH S I +G G +V++ + P
Sbjct: 4 KTGQVKWFNESKGFGFITPADGSKDVFVHFSAIQNDGFKTLAEGQQVEFSIQDSP 58
>gi|424590813|ref|ZP_18030249.1| cold shock-like protein CspG [Vibrio cholerae CP1037(10)]
gi|408033874|gb|EKG70388.1| cold shock-like protein CspG [Vibrio cholerae CP1037(10)]
Length = 70
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
TG +K F SKG GFITPDSG VFVH + I
Sbjct: 6 TGSVKWFNESKGFGFITPDSGGSDVFVHFNSI 37
>gi|398829637|ref|ZP_10587834.1| cold shock protein [Phyllobacterium sp. YR531]
gi|398216564|gb|EJN03110.1| cold shock protein [Phyllobacterium sp. YR531]
Length = 69
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ + L
Sbjct: 1 MSTGTVKWFNSTKGFGFIQPDDGSADVFVHISAVERAGLRSLNDGQKITFELV 53
>gi|307253880|ref|ZP_07535732.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260575|ref|ZP_07542267.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306863084|gb|EFM95026.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306869652|gb|EFN01437.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 83
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 50 SNRALQNPVE--TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
SN +NP+ TG +K F +KG GFITPD G +FVH S I G
Sbjct: 7 SNFYKENPMSKATGIVKWFNSTKGFGFITPDQGGKDIFVHFSGIVGS 53
>gi|90420715|ref|ZP_01228621.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
gi|90335006|gb|EAS48767.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
Length = 70
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+TG +K F KG GFI+PD+G VFVHIS +E
Sbjct: 2 AQTGTVKFFNMDKGFGFISPDAGGSDVFVHISSVE 36
>gi|417861986|ref|ZP_12507040.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|338820988|gb|EGP54958.1| cold shock protein [Agrobacterium tumefaciens F2]
Length = 69
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGMRSLNDGQKITYDIV 53
>gi|170691171|ref|ZP_02882337.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|170144420|gb|EDT12582.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
Length = 67
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEISG 36
>gi|159043321|ref|YP_001532115.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
shibae DFL 12]
gi|157911081|gb|ABV92514.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
12]
Length = 69
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F +KG+GFI PD G VFVHIS +E + D K + ++ A
Sbjct: 3 TGTVKWFNTTKGYGFIAPDEGGKDVFVHISAVERAGLTGLADNTKIEYELREGRDGRSSA 62
Query: 120 VHVEIV 125
+++V
Sbjct: 63 TELKVV 68
>gi|359300316|ref|ZP_09186155.1| cold shock-like protein CspC [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306617|ref|ZP_10825658.1| cold-shock DNA-binding domain protein [Haemophilus sputorum HK
2154]
gi|400374572|gb|EJP27489.1| cold-shock DNA-binding domain protein [Haemophilus sputorum HK
2154]
Length = 70
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPL-PGDEVKYRL 107
+TG +K F +KG GFI PD G VFVH S IE G Y L G +V++ +
Sbjct: 4 QTGTVKWFNATKGFGFIAPDQGGEDVFVHFSAIENNGGYRTLEEGAKVEFEV 55
>gi|354723341|ref|ZP_09037556.1| RNA chaperone/anti-terminator [Enterobacter mori LMG 25706]
Length = 70
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFITPD G VFVH S I+G
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFSAIQG 39
>gi|451812147|ref|YP_007448601.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778049|gb|AGF48997.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 82
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFITPD+G +F H S I +G G +V Y P +
Sbjct: 18 TGTVKWFNDAKGFGFITPDNGGEEIFAHFSSIQMDGFKTLKEGQKVSYETVQGP---KGK 74
Query: 118 QAVHV 122
QA+++
Sbjct: 75 QALNI 79
>gi|359782304|ref|ZP_09285525.1| putative cold-shock protein [Pseudomonas psychrotolerans L19]
gi|359369571|gb|EHK70141.1| putative cold-shock protein [Pseudomonas psychrotolerans L19]
Length = 69
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 12/79 (15%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKYR 106
+SNR + G +K F +KG+GFITP+SG P VFVH IEG + L G +V +
Sbjct: 1 MSNR------QNGTVKWFNETKGYGFITPESG-PDVFVHFRAIEGKGFKTLAEGQKVSFE 53
Query: 107 LCPIPPKFEKNQAVHVEIV 125
+ QA HV+++
Sbjct: 54 VVQGQKGM---QAEHVQVI 69
>gi|339495623|ref|YP_004715916.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|338802995|gb|AEJ06827.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 235
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G +K + KG GFI P+ G +FVHIS + G PL GD V +
Sbjct: 5 GTLKSWNDDKGFGFIRPEQGGEELFVHISAVHGERRPLVGDRVLF 49
>gi|297624347|ref|YP_003705781.1| cold-shock DNA-binding domain-containing protein [Truepera
radiovictrix DSM 17093]
gi|297165527|gb|ADI15238.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
17093]
Length = 84
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPL-PGDEVKYRLCPIPPKFEKN 117
TG++K F KG GFI D G VF H S I Y L GDEV++ +
Sbjct: 3 TGRVKWFSNEKGFGFIEQDGGGADVFCHFSAINASGYRSLNEGDEVEFEVEQGQKGL--- 59
Query: 118 QAVHVEIVHLTP 129
QA +VE+++ P
Sbjct: 60 QAKNVEVINAAP 71
>gi|315498658|ref|YP_004087462.1| cold-shock DNA-binding domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315416670|gb|ADU13311.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB
48]
Length = 69
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI PD G VFVHIS +E G G +V + L
Sbjct: 1 MSTGTVKWFNGTKGYGFIQPDDGGNDVFVHISAVERSGLRGLNEGQKVTFELA 53
>gi|209517087|ref|ZP_03265934.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295677385|ref|YP_003605909.1| cold-shock protein [Burkholderia sp. CCGE1002]
gi|209502480|gb|EEA02489.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295437228|gb|ADG16398.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
Length = 67
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEIRG 36
>gi|145480845|ref|XP_001426445.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393520|emb|CAK59047.1| unnamed protein product [Paramecium tetraurelia]
Length = 415
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 25 PHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAV 84
P L N+ +S P + ++ +T+ + + NP+ TG++K F K +GFI D + +
Sbjct: 297 PRLELNSAISCPP--LNKQPQTDQ--KKQMANPIYTGRLKFFDEQKNYGFIVMDEDKSDI 352
Query: 85 FVHISDIEGC 94
FVH+ D++
Sbjct: 353 FVHLDDLQKA 362
>gi|398828953|ref|ZP_10587153.1| cold shock protein [Phyllobacterium sp. YR531]
gi|398217811|gb|EJN04328.1| cold shock protein [Phyllobacterium sp. YR531]
Length = 70
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG+GFI PD+G VFVHIS +E G G +V Y +
Sbjct: 1 MASGTVKWFNGTKGYGFIQPDTGGADVFVHISAVERAGLRGLNDGQKVNYEIV 53
>gi|148261824|ref|YP_001235951.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
cryptum JF-5]
gi|326405328|ref|YP_004285410.1| cold shock protein [Acidiphilium multivorum AIU301]
gi|338980701|ref|ZP_08631957.1| Cold-shock DNA-binding domain-containing protein [Acidiphilium
sp. PM]
gi|146403505|gb|ABQ32032.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5]
gi|325052190|dbj|BAJ82528.1| cold shock protein [Acidiphilium multivorum AIU301]
gi|338208377|gb|EGO96242.1| Cold-shock DNA-binding domain-containing protein [Acidiphilium
sp. PM]
Length = 68
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 1 MSTGTVKWFNATKGYGFIQPDDGSKDVFVHISAVE 35
>gi|109898691|ref|YP_661946.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas
atlantica T6c]
gi|109700972|gb|ABG40892.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica
T6c]
Length = 84
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ GK+K F +KG GFI P+ G +F H S I EG G EVKY + P
Sbjct: 13 MAVGKVKWFNNAKGFGFIVPEDGGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGP---- 68
Query: 116 KNQAVHVEIVHLTPE 130
+ +H E + E
Sbjct: 69 --KGLHAENIDFNGE 81
>gi|386395359|ref|ZP_10080137.1| cold shock protein [Bradyrhizobium sp. WSM1253]
gi|385735985|gb|EIG56181.1| cold shock protein [Bradyrhizobium sp. WSM1253]
Length = 68
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFI PD G VFVHIS +E G G V Y + + PK K+
Sbjct: 3 TGVVKWFNATKGFGFIQPDDGGQDVFVHISAVERAGLSDLREGQTVSYEV-KVDPKRGKS 61
Query: 118 QAVHVEI 124
A ++ +
Sbjct: 62 SAENLRV 68
>gi|319785303|ref|YP_004144779.1| cold-shock protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|337270654|ref|YP_004614709.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|433776896|ref|YP_007307363.1| cold shock protein [Mesorhizobium australicum WSM2073]
gi|317171191|gb|ADV14729.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|336030964|gb|AEH90615.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
gi|433668911|gb|AGB47987.1| cold shock protein [Mesorhizobium australicum WSM2073]
Length = 70
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDNGGQDVFVHISAVERAGLSTLNEGQKINYEV 52
>gi|254487779|ref|ZP_05100984.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
gi|214044648|gb|EEB85286.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
Length = 68
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI PD G +FVHIS +E
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDGGGKDIFVHISAVE 35
>gi|399525142|ref|ZP_10765611.1| cold-shock DNA-binding domain protein [Atopobium sp. ICM58]
gi|398373468|gb|EJN51403.1| cold-shock DNA-binding domain protein [Atopobium sp. ICM58]
Length = 69
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI---EGCYVPLPGDEVKYRLCPIPPKFEK 116
TG IK F +KG GFITPD VFVH S+I G L G+ V+Y P +
Sbjct: 3 TGTIKWFNDAKGFGFITPDDESGDVFVHYSNIVGQSGRRTLLEGERVEYEAIEGPKGLQA 62
Query: 117 NQAVHVE 123
E
Sbjct: 63 MNVARAE 69
>gi|399041134|ref|ZP_10736283.1| cold shock protein [Rhizobium sp. CF122]
gi|398060549|gb|EJL52369.1| cold shock protein [Rhizobium sp. CF122]
Length = 69
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F +KG GFI PD G VFVHIS +E G G ++ Y L K
Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDDGSTDVFVHISAVERAGLGNLSDGQKITYDLVR-DKKSG 59
Query: 116 KNQA 119
KN A
Sbjct: 60 KNSA 63
>gi|254464633|ref|ZP_05078044.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
gi|206685541|gb|EDZ46023.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
Length = 68
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F +KG GFI PD G VFVHIS +E + D K + +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERSGLTGLADNQKVTFDIEAGRDGRE 60
Query: 118 QAVHVEI 124
AV++++
Sbjct: 61 SAVNLQL 67
>gi|56696164|ref|YP_166520.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
gi|56677901|gb|AAV94567.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
Length = 68
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNATKGYGFIAPDDGGKDVFVHISAVE 35
>gi|288962373|ref|YP_003452668.1| cold shock protein [Azospirillum sp. B510]
gi|375006612|ref|YP_004975396.1| Cold shock protein, DNA binding [Azospirillum lipoferum 4B]
gi|288914639|dbj|BAI76124.1| cold shock protein [Azospirillum sp. B510]
gi|357427870|emb|CBS90819.1| Cold shock protein, DNA binding [Azospirillum lipoferum 4B]
Length = 69
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
G +K F +KG GFI P+SG P VFVHIS +E G + G ++ Y
Sbjct: 3 VGTVKWFNSTKGFGFIQPESGGPDVFVHISAVERAGLRSLVDGQKISY 50
>gi|254294491|ref|YP_003060514.1| cold-shock DNA-binding domain-containing protein [Hirschia baltica
ATCC 49814]
gi|254043022|gb|ACT59817.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814]
Length = 69
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
TG +K F +KG+GFI PD G VFVH++ ++ G G +V++ L P +
Sbjct: 3 TGTVKWFNATKGYGFIAPDDGGADVFVHVTAVQQAGLAGLDEGQKVEFELVTDPKR 58
>gi|187921398|ref|YP_001890430.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|187719836|gb|ACD21059.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
Length = 67
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEISG 36
>gi|110678556|ref|YP_681563.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
gi|109454672|gb|ABG30877.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
Length = 68
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ +G +K F +KG+GFI PDSG +FVHIS +E
Sbjct: 1 MASGTVKWFNTTKGYGFIAPDSGGKDIFVHISAVE 35
>gi|451964839|ref|ZP_21918101.1| cold shock-like protein CspC [Edwardsiella tarda NBRC 105688]
gi|451316416|dbj|GAC63463.1| cold shock-like protein CspC [Edwardsiella tarda NBRC 105688]
Length = 69
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
+TG++K F SKG GFITP G VFVH S I +G G +V++ + P
Sbjct: 4 KTGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSP 58
>gi|443469221|ref|ZP_21059402.1| Cold shock protein CspC [Pseudomonas pseudoalcaligenes KF707]
gi|442898556|gb|ELS25231.1| Cold shock protein CspC [Pseudomonas pseudoalcaligenes KF707]
Length = 203
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 4 SPLPFENKKPALSSPMLS---PQEPHLHSN---NTLSLPSPIITRRTRTESISNRALQNP 57
+PLP +PA+ + +L+ HL N T + P P + +SNR
Sbjct: 86 APLPSLGGQPAVLASLLALVIAIALHLALNLRKATQAAPLP--------QDMSNR----- 132
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
ETG +K F SKG GFI+ D+G+ +FVH I EG V + G V++
Sbjct: 133 -ETGTVKWFNTSKGFGFISRDTGDD-IFVHFRAIRGEGHRVLIEGQRVEF 180
>gi|91777357|ref|YP_552565.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|385206495|ref|ZP_10033365.1| cold shock protein [Burkholderia sp. Ch1-1]
gi|91690017|gb|ABE33215.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|158187225|gb|ABW22844.1| hypothetical protein [Burkholderia sp. NCIMB 10467]
gi|385186386|gb|EIF35660.1| cold shock protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEISG 36
>gi|73667319|ref|YP_303335.1| cold-shock DNA-binding protein family protein [Ehrlichia canis str.
Jake]
gi|72394460|gb|AAZ68737.1| cold-shock DNA-binding protein family [Ehrlichia canis str. Jake]
Length = 87
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPA---------VFVHISDIEGCYVP-- 97
+S R + + TG +K F KG+GFI D G+ +FVHI+ ++ +
Sbjct: 1 MSQRLVDDSTYTGYVKWFSSEKGYGFICKDQGDKVKNIGQDIKDIFVHITALQRSKIDGL 60
Query: 98 LPGDEVKYRLCPIPPKFEKNQAVHVEIV 125
G +VKY+L KF AV++E++
Sbjct: 61 REGQKVKYQLDKNNGKFS---AVNLEVL 85
>gi|437999946|ref|YP_007183679.1| cold shock protein [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812873|ref|YP_007449326.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339180|gb|AFZ83602.1| cold shock protein [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778842|gb|AGF49722.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 82
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPP 112
TG +K F +KG GFITPD+G +F H S I +G G +V Y P
Sbjct: 18 TGTVKWFNDAKGFGFITPDNGGEEIFAHFSSIQMDGFKTLKEGQKVSYETVQGPK 72
>gi|62290382|ref|YP_222175.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|189024609|ref|YP_001935377.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|260546920|ref|ZP_05822659.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
NCTC 8038]
gi|260755213|ref|ZP_05867561.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260758433|ref|ZP_05870781.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260762259|ref|ZP_05874602.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|261214476|ref|ZP_05928757.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|376272776|ref|YP_005151354.1| cold-shock family protein [Brucella abortus A13334]
gi|423166439|ref|ZP_17153142.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI435a]
gi|423171186|ref|ZP_17157861.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI474]
gi|423172732|ref|ZP_17159403.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI486]
gi|423178575|ref|ZP_17165219.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI488]
gi|423180617|ref|ZP_17167258.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI010]
gi|423183748|ref|ZP_17170385.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI016]
gi|423185312|ref|ZP_17171926.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI021]
gi|423188447|ref|ZP_17175057.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI259]
gi|62196514|gb|AAX74814.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|189020181|gb|ACD72903.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|260095970|gb|EEW79847.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
NCTC 8038]
gi|260668751|gb|EEX55691.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672691|gb|EEX59512.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675321|gb|EEX62142.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260916083|gb|EEX82944.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|363400382|gb|AEW17352.1| cold-shock family protein [Brucella abortus A13334]
gi|374538520|gb|EHR10028.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI474]
gi|374543923|gb|EHR15401.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI435a]
gi|374544251|gb|EHR15728.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI486]
gi|374545356|gb|EHR16819.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI488]
gi|374548148|gb|EHR19600.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI010]
gi|374548576|gb|EHR20024.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI016]
gi|374559009|gb|EHR30398.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI259]
gi|374560022|gb|EHR31405.1| cold shock protein CspA [Brucella abortus bv. 1 str. NI021]
Length = 69
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 1 MATGTVKWFNTTKGFGFIQPDQGGADVFVHISAVQRAGLTTLDEGQKVSYEIV 53
>gi|114326681|ref|YP_743838.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
gi|114314855|gb|ABI60915.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
Length = 83
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F +KG+GFI PD G VFVHIS +E + D K + K A
Sbjct: 18 TGTVKWFNATKGYGFIHPDGGGADVFVHISAVEKAGLSKLDDGQKLSFDLEAGRQGKTSA 77
Query: 120 VHVEIV 125
V++++
Sbjct: 78 VNLKLA 83
>gi|393722055|ref|ZP_10341982.1| cold-shock DNA-binding domain-containing protein, partial
[Sphingomonas sp. PAMC 26605]
Length = 191
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 52 RALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRL 107
R L TG +K F KG GFI D G+P FVHIS +E G L GD +++ L
Sbjct: 117 RQLTGEKATGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERGGMTSLNEGDRLEFEL 174
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GF+ D G VFVHIS +E
Sbjct: 19 TGVVKFFNGQKGFGFVVRDDGGEDVFVHISAVE 51
>gi|295688501|ref|YP_003592194.1| cold-shock DNA-binding domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295430404|gb|ADG09576.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
21756]
Length = 175
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G VFVHIS +E G G +V Y L
Sbjct: 109 TGVVKWFNTTKGFGFIQPDNGGGDVFVHISAVERAGLRGLNEGQQVGYEL 158
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG GFI P+ G VFVHI+ +E G GD+V Y L
Sbjct: 3 NGVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSGLSGLNEGDQVAYEL 52
>gi|265995386|ref|ZP_06107943.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|262766499|gb|EEZ12288.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
Length = 69
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 1 MATGTVKWFNTTKGFGFIQPDQGGTNVFVHISAVQRAGLTTLDEGQKVSYEIV 53
>gi|114765785|ref|ZP_01444880.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
gi|114541892|gb|EAU44928.1| cold shock family protein [Roseovarius sp. HTCC2601]
Length = 68
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD+G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDAGGKDVFVHISAVE 35
>gi|332715879|ref|YP_004443345.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
gi|418409902|ref|ZP_12983213.1| cold shock-like protein cspA [Agrobacterium tumefaciens 5A]
gi|325062564|gb|ADY66254.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
gi|358003951|gb|EHJ96281.1| cold shock-like protein cspA [Agrobacterium tumefaciens 5A]
Length = 69
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGLRSLNDGQKITYDIV 53
>gi|398352830|ref|YP_006398294.1| cold shock protein y4cH [Sinorhizobium fredii USDA 257]
gi|390128156|gb|AFL51537.1| putative cold shock protein y4cH [Sinorhizobium fredii USDA 257]
Length = 69
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGMNSIVEGQKLGFEL 52
>gi|418398543|ref|ZP_12972097.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|359507401|gb|EHK79909.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
Length = 69
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIEPDDGSADVFVHISAVERAGMNSIVEGQKLGFEL 52
>gi|126731183|ref|ZP_01746991.1| cold shock family protein [Sagittula stellata E-37]
gi|126708485|gb|EBA07543.1| cold shock family protein [Sagittula stellata E-37]
Length = 68
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI P+SG VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGYGFIQPESGGKDVFVHISAVE 35
>gi|393768700|ref|ZP_10357234.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
gi|392725847|gb|EIZ83178.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. GXF4]
Length = 69
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K + +KG+GFI PD G VFVHIS +E G + G + Y +
Sbjct: 1 MNTGTVKWYNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLVEGQRLSYEILT 54
>gi|384541480|ref|YP_005725563.1| CspA8 Cold shock family protein [Sinorhizobium meliloti SM11]
gi|336036823|gb|AEH82754.1| CspA8 Cold shock family protein [Sinorhizobium meliloti SM11]
Length = 110
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 44 TGTVKWFNSTKGFGFIAPDDGSADVFVHISAVERAGMNSIVEGQKLGFEL 93
>gi|293606147|ref|ZP_06688512.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
43553]
gi|311107159|ref|YP_003980012.1| cold-shock DNA-binding domain-containing protein 3 [Achromobacter
xylosoxidans A8]
gi|359796270|ref|ZP_09298874.1| cold shock-like protein [Achromobacter arsenitoxydans SY8]
gi|421484318|ref|ZP_15931889.1| cold shock-like protein [Achromobacter piechaudii HLE]
gi|423018598|ref|ZP_17009319.1| cold shock-like protein [Achromobacter xylosoxidans AXX-A]
gi|292815602|gb|EFF74718.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
43553]
gi|310761848|gb|ADP17297.1| cold-shock DNA-binding domain protein 3 [Achromobacter
xylosoxidans A8]
gi|338778360|gb|EGP42835.1| cold shock-like protein [Achromobacter xylosoxidans AXX-A]
gi|359365789|gb|EHK67482.1| cold shock-like protein [Achromobacter arsenitoxydans SY8]
gi|400197527|gb|EJO30492.1| cold shock-like protein [Achromobacter piechaudii HLE]
Length = 67
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ETG +K F KG+GFITP++G +F H S+I+G
Sbjct: 1 METGVVKWFNSEKGYGFITPEAGGKDLFAHFSEIQGS 37
>gi|110678559|ref|YP_681566.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
gi|109454675|gb|ABG30880.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
Length = 68
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVE 35
>gi|422320066|ref|ZP_16401134.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54]
gi|317405219|gb|EFV85558.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54]
Length = 67
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ETG +K F KG+GFITP++G +F H S+I+G
Sbjct: 1 METGVVKGFNSEKGYGFITPEAGGKDLFAHFSEIQGS 37
>gi|408491380|ref|YP_006867749.1| cold shock protein CspC-like protein [Psychroflexus torquis ATCC
700755]
gi|408468655|gb|AFU68999.1| cold shock protein CspC-like protein [Psychroflexus torquis ATCC
700755]
Length = 63
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
GK+K F SKG+GFIT D +FVH++ + G + GDEV+Y
Sbjct: 3 GKVKFFNESKGYGFITNDETGEDIFVHVTGLNGESLN-EGDEVEY 46
>gi|406924629|gb|EKD61355.1| hypothetical protein ACD_54C00274G0004 [uncultured bacterium]
Length = 68
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVH+S +E
Sbjct: 3 TGTVKWFNSTKGYGFIAPDDGGKDVFVHVSAVE 35
>gi|254470899|ref|ZP_05084302.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp.
JE062]
gi|374329070|ref|YP_005079254.1| Cold shock, CspA [Pseudovibrio sp. FO-BEG1]
gi|211960041|gb|EEA95238.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp.
JE062]
gi|359341858|gb|AEV35232.1| Cold shock, CspA [Pseudovibrio sp. FO-BEG1]
Length = 68
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG GFI P+ G VFVHIS +E G G EV + L + +
Sbjct: 4 GTVKWFNTTKGFGFIAPEDGSKDVFVHISAVERSGLSTLADGQEVTFELE--TGRDGRQS 61
Query: 119 AVHVEIV 125
AV++E V
Sbjct: 62 AVNLETV 68
>gi|381166362|ref|ZP_09875578.1| Cold shock protein, DNA binding [Phaeospirillum molischianum DSM
120]
gi|380684582|emb|CCG40390.1| Cold shock protein, DNA binding [Phaeospirillum molischianum DSM
120]
Length = 69
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG GFI PD+G P VFVHIS +E
Sbjct: 3 NGTVKWFNSTKGFGFIAPDNGGPDVFVHISAVE 35
>gi|329889214|ref|ZP_08267557.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
ATCC 11568]
gi|328844515|gb|EGF94079.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
ATCC 11568]
Length = 70
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNSTKGYGFIQPDDGGKDVFVHISAVE 35
>gi|296390681|ref|ZP_06880156.1| cold-shock protein [Pseudomonas aeruginosa PAb1]
gi|416881690|ref|ZP_11921681.1| cold-shock protein [Pseudomonas aeruginosa 152504]
gi|334835641|gb|EGM14503.1| cold-shock protein [Pseudomonas aeruginosa 152504]
Length = 204
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 4 SPLPFENKKPALSSPMLS-PQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+PLP +PA+ P+LS L +L P+ + + ETG
Sbjct: 82 APLPTIADQPAIVLPLLSLVLATALQLAGSLKPGKPVSRSASAPTVLGGSQDSGNRETGT 141
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
+K F SKG GFI+ DSGE +FVH I EG + + G V++ +
Sbjct: 142 VKWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRILIEGQRVEFSVV 188
>gi|429769279|ref|ZP_19301393.1| cold-shock DNA-binding domain protein [Brevundimonas diminuta
470-4]
gi|429187462|gb|EKY28376.1| cold-shock DNA-binding domain protein [Brevundimonas diminuta
470-4]
Length = 70
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNSTKGYGFIQPDDGGKDVFVHISAVE 35
>gi|424871700|ref|ZP_18295362.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393167401|gb|EJC67448.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 87
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 33 LSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ LP + R RT ++ ETG +K F KG GFI PD G +FVHIS ++
Sbjct: 1 MMLPVWMAGREKRTLGMA--------ETGTVKFFNTDKGFGFIKPDRGGADIFVHISAVQ 52
Query: 93 GCYVPLPGDEVKYRLCPIPPKFEKN-QAVHVEIV 125
+ + K P + K +AV+++I
Sbjct: 53 ASGLAGLTENQKVSFDTEPDRRGKGPKAVNLQIA 86
>gi|418399209|ref|ZP_12972760.1| CspA-like protein [Sinorhizobium meliloti CCNWSX0020]
gi|359506942|gb|EHK79453.1| CspA-like protein [Sinorhizobium meliloti CCNWSX0020]
Length = 99
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP 97
TGK+K F +K GFITPD G VF+H+S E +P
Sbjct: 3 TGKVKWFSAAKRFGFITPDDGTADVFLHLSKFEEANLP 40
>gi|350569851|ref|ZP_08938244.1| cold shock protein CspA [Propionibacterium avidum ATCC 25577]
gi|348659775|gb|EGY76500.1| cold shock protein CspA [Propionibacterium avidum ATCC 25577]
Length = 68
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKYRL 107
+ TG +K F KG+GFI PD G VF H S I Y L GD+V+Y +
Sbjct: 1 MATGTVKWFNADKGYGFIQPDDGSADVFAHFSAINSSGYRSLDEGDQVEYDV 52
>gi|163801267|ref|ZP_02195166.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
gi|159174756|gb|EDP59556.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
Length = 70
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F SKG GFITPD+G +FVH I EG G +V + +
Sbjct: 6 TGSVKWFNESKGFGFITPDNGGSDLFVHFKSIASEGFKTLTEGQKVSFNV 55
>gi|374293282|ref|YP_005040317.1| Cold shock protein, DNA binding [Azospirillum lipoferum 4B]
gi|357425221|emb|CBS88105.1| Cold shock protein, DNA binding [Azospirillum lipoferum 4B]
Length = 69
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG+GFI P++G VFVHI+ ++ G + G V++ + K+
Sbjct: 4 GTVKWFNTTKGYGFIAPEAGSKDVFVHITAVQRSGLHALSEGQRVQFEVARGTNG--KDS 61
Query: 119 AVHVEIV 125
AV++ +V
Sbjct: 62 AVNISVV 68
>gi|299892776|gb|ADJ57697.1| cold shock protein [Caulobacter crescentus NA1000]
Length = 176
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G VFVHIS +E G G +V Y L
Sbjct: 110 TGVVKWFNTTKGFGFIQPDNGGGDVFVHISAVERAGLRGLNEGQQVGYEL 159
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG GFI P+ G VFVHI+ +E G GD+V Y L
Sbjct: 3 NGVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSGLSGLNEGDQVAYEL 52
>gi|284043353|ref|YP_003393693.1| cold-shock protein [Conexibacter woesei DSM 14684]
gi|283947574|gb|ADB50318.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
Length = 67
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ TG +K F KG GFITPD G +FVH S I G Y LP G +V Y
Sbjct: 1 MATGTVKWFSDDKGFGFITPDDGGRDLFVHYSGISGDGYRSLPEGSKVSY 50
>gi|238025342|ref|YP_002909574.1| cold-shock DNA-binding domain-containing protein [Burkholderia
glumae BGR1]
gi|237880007|gb|ACR32339.1| cold-shock DNA-binding domain-containing protein [Burkholderia
glumae BGR1]
Length = 67
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG GFITPD G VFVH S+I+
Sbjct: 3 TGTVKWFNDAKGFGFITPDDGSEDVFVHFSEIQ 35
>gi|430003882|emb|CCF19673.1| Cold shock protein cspA [Rhizobium sp.]
Length = 69
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G VFVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDDGSSDVFVHISAVERAGMNSIVEGQKLGFEL 52
>gi|428312925|ref|YP_007123902.1| cold shock protein [Microcoleus sp. PCC 7113]
gi|428254537|gb|AFZ20496.1| cold shock protein [Microcoleus sp. PCC 7113]
Length = 203
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 56 NPV-ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLPGDEVKYRLCPIPPK 113
NPV G++K + +G GFI PD G VF+HIS ++G P GD + Y L
Sbjct: 2 NPVLYQGRLKTWKDERGFGFIKPDDGSKEVFLHISALKGTSRRPQVGDTILYELATESDG 61
Query: 114 FEKNQAVHVEIVHLTP 129
+ ++ V L P
Sbjct: 62 KVRASNASIQGVALRP 77
>gi|339504867|ref|YP_004692287.1| cold shock protein CspA [Roseobacter litoralis Och 149]
gi|338758860|gb|AEI95324.1| cold shock protein CspA [Roseobacter litoralis Och 149]
Length = 68
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNSTKGFGFIAPDGGSKDVFVHISAVE 35
>gi|110678721|ref|YP_681728.1| cold shock protein CspA-related protein [Roseobacter
denitrificans OCh 114]
gi|109454837|gb|ABG31042.1| cold shock protein CspA-related protein, putative [Roseobacter
denitrificans OCh 114]
Length = 68
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNATKGFGFIAPDGGSKDVFVHISAVE 35
>gi|397631500|gb|EJK70178.1| hypothetical protein THAOC_08484 [Thalassiosira oceanica]
Length = 120
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F KG+GFI PD G VFVH ++I EG ++V++R+ + +
Sbjct: 34 LSTGSVKWFDSEKGYGFIVPDDGSDDVFVHQTNINVEGFRSLADDEQVEFRI-EVDDRTG 92
Query: 116 KNQAVHV 122
K +A V
Sbjct: 93 KRKATDV 99
>gi|347761874|ref|YP_004869435.1| cold shock transcriptional regulator [Gluconacetobacter xylinus
NBRC 3288]
gi|349686433|ref|ZP_08897575.1| cold shock protein [Gluconacetobacter oboediens 174Bp2]
gi|349699961|ref|ZP_08901590.1| cold shock protein [Gluconacetobacter europaeus LMG 18494]
gi|347580844|dbj|BAK85065.1| transcriptional regulator cold shock protein [Gluconacetobacter
xylinus NBRC 3288]
Length = 67
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TGK+K F +KG GFI PD G VFVHI+ ++
Sbjct: 1 MATGKVKWFNATKGFGFIMPDDGGKDVFVHITAVQAA 37
>gi|296115123|ref|ZP_06833764.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978224|gb|EFG84961.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
Length = 67
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TGK+K F +KG GFI PD G VFVHI+ ++ L G ++N
Sbjct: 1 MATGKVKWFNATKGFGFIMPDDGGKDVFVHITAVQAA--GLRG-------------LDEN 45
Query: 118 QAVHVEI 124
QAV +I
Sbjct: 46 QAVSYDI 52
>gi|222149268|ref|YP_002550225.1| cold shock protein [Agrobacterium vitis S4]
gi|221736252|gb|ACM37215.1| cold shock protein [Agrobacterium vitis S4]
Length = 67
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ GD+V + + K K++A
Sbjct: 3 TGTVKFFNDDKGFGFITPENGGTDVFVHVSSLQRGDSLREGDKVSFEIGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|83944389|ref|ZP_00956843.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|83953430|ref|ZP_00962152.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|254486516|ref|ZP_05099721.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
gi|83842398|gb|EAP81566.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83844712|gb|EAP82595.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|214043385|gb|EEB84023.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
Length = 68
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVE 35
>gi|444921256|ref|ZP_21241093.1| Cold shock-like protein CspE [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444507615|gb|ELV07790.1| Cold shock-like protein CspE [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 67
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F SKG GFITP+ G P VFVH S I+G
Sbjct: 4 GTVKWFNESKGFGFITPEDGSPDVFVHFSTIQG 36
>gi|408379087|ref|ZP_11176681.1| Cold shock-like protein cspA [Agrobacterium albertimagni AOL15]
gi|407746571|gb|EKF58093.1| Cold shock-like protein cspA [Agrobacterium albertimagni AOL15]
Length = 69
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS ++ G + G ++ Y +
Sbjct: 1 MNTGTVKWFNSTKGFGFIQPDEGSADVFVHISAVQRAGMRDLVEGQKIGYDIV 53
>gi|420240788|ref|ZP_14744981.1| cold shock protein [Rhizobium sp. CF080]
gi|398074843|gb|EJL65975.1| cold shock protein [Rhizobium sp. CF080]
Length = 81
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 51 NRALQNPV-ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
N AL+ + TG +K F +KG GFI PD+G FVHIS +E G + G ++ Y L
Sbjct: 5 NVALKGFIMTTGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMGEIVEGQKLGYEL 64
>gi|153009006|ref|YP_001370221.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|404318729|ref|ZP_10966662.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi CTS-325]
gi|444310903|ref|ZP_21146518.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
intermedium M86]
gi|151560894|gb|ABS14392.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
gi|443485701|gb|ELT48488.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
intermedium M86]
Length = 69
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 1 MATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLATLDEGQKVSYEIV 53
>gi|451940901|ref|YP_007461539.1| cold shock protein (beta-ribbon, CspA family) [Bartonella australis
Aust/NH1]
gi|451900288|gb|AGF74751.1| cold shock protein (beta-ribbon, CspA family) [Bartonella australis
Aust/NH1]
Length = 71
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN- 117
+TG++K F +KG GFI PD G +FVHIS ++ + D K P K
Sbjct: 3 QTGEVKFFNSNKGFGFIKPDDGSADIFVHISAVQASGLTGLSDAQKVSFDVEPDNRGKGP 62
Query: 118 QAVHVEIV 125
+AV++ +V
Sbjct: 63 KAVNISVV 70
>gi|406875775|gb|EKD25506.1| hypothetical protein ACD_80C00041G0005 [uncultured bacterium (gcode
4)]
Length = 72
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
TG +K F R+K GFITPD+GE VFVH +++ G + GD V + +
Sbjct: 3 TGIVKFFNRTKNFGFITPDNGEKDVFVHGTNVIGESIA-DGDTVTFDV 49
>gi|374856977|dbj|BAL59830.1| cold shock protein ,beta-ribbon, CspA family [uncultured candidate
division OP1 bacterium]
Length = 69
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
TGK+K F +KG+GFI D+G P VFVH S I +G G V++ +
Sbjct: 5 TGKVKWFNDAKGYGFIQQDNGGPDVFVHFSAIKADGFKTLREGQAVEFEIT 55
>gi|163744653|ref|ZP_02152013.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
gi|161381471|gb|EDQ05880.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
Length = 68
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVE 35
>gi|220920871|ref|YP_002496172.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219945477|gb|ACL55869.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 69
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F KG GFI PD G VFVHIS +E G + G +V Y L
Sbjct: 4 GTVKWFNGQKGFGFIQPDDGGKDVFVHISAVERSGLHTLSEGQKVSYEL 52
>gi|375087389|ref|ZP_09733764.1| cold shock protein 1 [Megamonas funiformis YIT 11815]
gi|291534217|emb|CBL07330.1| cold-shock DNA-binding protein family [Megamonas hypermegale
ART12/1]
gi|374561018|gb|EHR32368.1| cold shock protein 1 [Megamonas funiformis YIT 11815]
Length = 71
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F KG+GFIT D G +FVH S I EG G +V + K
Sbjct: 3 TGTVKWFNSGKGYGFITNDDGSGDLFVHFSAINSEGFKTLEEGQKVTFDTEADSRDASKL 62
Query: 118 QAVHVEIV 125
+AV+V +V
Sbjct: 63 RAVNVTVV 70
>gi|300696567|ref|YP_003747228.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum CFBP2957]
gi|421896639|ref|ZP_16327036.1| cold shock-like protein [Ralstonia solanacearum MolK2]
gi|206587804|emb|CAQ18386.1| cold shock-like protein [Ralstonia solanacearum MolK2]
gi|299073291|emb|CBJ52800.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum CFBP2957]
Length = 67
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 1 MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGA 37
>gi|339505031|ref|YP_004692451.1| cold shock protein CspA [Roseobacter litoralis Och 149]
gi|338759024|gb|AEI95488.1| cold shock protein CspA [Roseobacter litoralis Och 149]
Length = 68
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVE 35
>gi|23502361|ref|NP_698488.1| cold-shock family protein [Brucella suis 1330]
gi|161619440|ref|YP_001593327.1| hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
gi|163843747|ref|YP_001628151.1| hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
gi|225627936|ref|ZP_03785972.1| cold-shock family protein [Brucella ceti str. Cudo]
gi|225852973|ref|YP_002733206.1| hypothetical protein BMEA_A1545 [Brucella melitensis ATCC 23457]
gi|256369909|ref|YP_003107420.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260565284|ref|ZP_05835768.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260566008|ref|ZP_05836478.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
4 str. 40]
gi|261219622|ref|ZP_05933903.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261315666|ref|ZP_05954863.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261322510|ref|ZP_05961707.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261325555|ref|ZP_05964752.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
5K33]
gi|261755443|ref|ZP_05999152.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
3 str. 686]
gi|265989135|ref|ZP_06101692.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|265991548|ref|ZP_06104105.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265998596|ref|ZP_06111153.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|306838469|ref|ZP_07471310.1| cold-shock family protein [Brucella sp. NF 2653]
gi|306843158|ref|ZP_07475777.1| cold-shock family protein [Brucella sp. BO2]
gi|306844496|ref|ZP_07477085.1| cold-shock family protein [Brucella inopinata BO1]
gi|340791101|ref|YP_004756566.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|376275896|ref|YP_005116335.1| cold shock protein cspa [Brucella canis HSK A52141]
gi|376281153|ref|YP_005155159.1| cold-shock family protein [Brucella suis VBI22]
gi|384225147|ref|YP_005616311.1| cold-shock family protein [Brucella suis 1330]
gi|23348343|gb|AAN30403.1| cold-shock family protein [Brucella suis 1330]
gi|161336251|gb|ABX62556.1| Hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
gi|163674470|gb|ABY38581.1| Hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
gi|225617099|gb|EEH14145.1| cold-shock family protein [Brucella ceti str. Cudo]
gi|225641338|gb|ACO01252.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|256000072|gb|ACU48471.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260151352|gb|EEW86446.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260155526|gb|EEW90606.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
4 str. 40]
gi|260924711|gb|EEX91279.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261295200|gb|EEX98696.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261301535|gb|EEY05032.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
5K33]
gi|261304692|gb|EEY08189.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261745196|gb|EEY33122.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
3 str. 686]
gi|262553220|gb|EEZ09054.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|263002332|gb|EEZ14907.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|264661332|gb|EEZ31593.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|306275107|gb|EFM56863.1| cold-shock family protein [Brucella inopinata BO1]
gi|306286653|gb|EFM58214.1| cold-shock family protein [Brucella sp. BO2]
gi|306406433|gb|EFM62671.1| cold-shock family protein [Brucella sp. NF 2653]
gi|340559560|gb|AEK54798.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|343383327|gb|AEM18819.1| cold-shock family protein [Brucella suis 1330]
gi|358258752|gb|AEU06487.1| cold-shock family protein [Brucella suis VBI22]
gi|363404463|gb|AEW14758.1| cold shock protein cspa [Brucella canis HSK A52141]
Length = 69
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 1 MATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIV 53
>gi|398377787|ref|ZP_10535958.1| cold shock protein [Rhizobium sp. AP16]
gi|397726278|gb|EJK86718.1| cold shock protein [Rhizobium sp. AP16]
Length = 69
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G FVHIS +E G + G ++ Y L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDDGGADAFVHISAVERAGMREIVEGQKIAYEL 52
>gi|383771763|ref|YP_005450828.1| cold shock protein [Bradyrhizobium sp. S23321]
gi|381359886|dbj|BAL76716.1| cold shock protein [Bradyrhizobium sp. S23321]
Length = 69
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
TG +K F KG GFI PD G VFVHIS +E G G +V + +
Sbjct: 3 TGTVKWFNSQKGFGFIQPDQGSQDVFVHISAVERAGMSTLNEGQKVSFEIVA 54
>gi|261752785|ref|ZP_05996494.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261742538|gb|EEY30464.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
5 str. 513]
Length = 69
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS ++ G G +V Y +
Sbjct: 1 MATGTVKWFNATKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIV 53
>gi|126733685|ref|ZP_01749432.1| cold shock protein CspA-related protein, putative [Roseobacter
sp. CCS2]
gi|126716551|gb|EBA13415.1| cold shock protein CspA-related protein, putative [Roseobacter
sp. CCS2]
Length = 68
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVE 35
>gi|119776095|ref|YP_928835.1| cold-shock DNA-binding domain-containing protein [Shewanella
amazonensis SB2B]
gi|119768595|gb|ABM01166.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B]
Length = 70
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F +KG GFITPD+G VFVH I +G G +V++ +
Sbjct: 6 TGSVKWFNETKGFGFITPDNGGADVFVHFRAIAVDGFKTLAEGQQVQFNV 55
>gi|407718108|ref|YP_006795513.1| Cold-shock DNA-binding domain-containing protein [Leuconostoc
carnosum JB16]
gi|407241864|gb|AFT81514.1| putative Cold-shock DNA-binding domain-containing protein
[Leuconostoc carnosum JB16]
Length = 74
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K + + +G+G+ITPD G VFVH + D+EG G+ V Y L ++
Sbjct: 1 MKTGTVKIWQKERGYGYITPDDGGDDVFVHFNGIDMEGFKSLNQGERVSYVLVAGYKTYQ 60
Query: 116 KNQ 118
Q
Sbjct: 61 AAQ 63
>gi|386335010|ref|YP_006031180.1| cold shock-like protein [Ralstonia solanacearum Po82]
gi|334197460|gb|AEG70644.1| cold shock-like protein [Ralstonia solanacearum Po82]
Length = 109
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 43 MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGA 79
>gi|167584235|ref|ZP_02376623.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
Length = 67
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
++TG +K F +KG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNETKGFGFITPDKGGDDLFAHFSEIRGT 37
>gi|424876934|ref|ZP_18300593.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164537|gb|EJC64590.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 99
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP 97
TGK+K F SKG GFITP G VF+H S +E +P
Sbjct: 3 TGKVKWFSVSKGFGFITPHDGGADVFLHFSKVEEAKLP 40
>gi|186473789|ref|YP_001861131.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184196121|gb|ACC74085.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ETG +K F SKG GFITPD G +F H S+I G
Sbjct: 1 METGIVKWFNDSKGFGFITPDKGGDDLFAHFSEITG 36
>gi|373118855|ref|ZP_09532973.1| cold shock-like protein CspA [Lachnospiraceae bacterium 7_1_58FAA]
gi|371666285|gb|EHO31438.1| cold shock-like protein CspA [Lachnospiraceae bacterium 7_1_58FAA]
Length = 70
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG GFI+ D G VFVH S I +G G +V Y + P P +K +
Sbjct: 4 GTVKWFNETKGFGFISNDEGGDDVFVHFSAIVCDGFKTLQEGQKVTYDVEPDPKNADKLR 63
Query: 119 AVHV 122
AV+V
Sbjct: 64 AVNV 67
>gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 69
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F SKG GFITP G VFVH S I EG G +V++ +
Sbjct: 5 TGTVKWFNESKGFGFITPADGSKDVFVHFSAIQSEGFKTLAEGQKVEFEI 54
>gi|354615776|ref|ZP_09033506.1| cold-shock DNA-binding domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353219875|gb|EHB84383.1| cold-shock DNA-binding domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 67
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFI DSGE VFVH S+IEG
Sbjct: 4 GTVKWFNAEKGFGFIAQDSGEGDVFVHYSEIEG 36
>gi|402568837|ref|YP_006618181.1| Cold shock protein [Burkholderia cepacia GG4]
gi|402250034|gb|AFQ50487.1| Cold shock protein [Burkholderia cepacia GG4]
Length = 80
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKYRL 107
V+TG +K F +KG GFI+PD+G +F H S+I G G +V Y +
Sbjct: 14 VDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRGTGFKTLAEGQKVSYEV 65
>gi|398828984|ref|ZP_10587184.1| cold shock protein [Phyllobacterium sp. YR531]
gi|398217842|gb|EJN04359.1| cold shock protein [Phyllobacterium sp. YR531]
Length = 71
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG +K F KG GFI PD G +FVHIS ++ + D K P + K
Sbjct: 2 AQTGTVKFFNSEKGFGFIKPDDGAADIFVHISAVQASGLTDLADNQKVSFDTEPDRRGKG 61
Query: 118 -QAVHVEIVH 126
+AV++ I
Sbjct: 62 PKAVNISITE 71
>gi|374854839|dbj|BAL57711.1| cold-shock DNA-binding domain protein [uncultured candidate
division OP1 bacterium]
gi|374856542|dbj|BAL59395.1| cold shock protein ,beta-ribbon, CspA family [uncultured candidate
division OP1 bacterium]
Length = 69
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TGK+K F +KG GFI D+G P VFVH S I EG G V++ +
Sbjct: 3 TGKVKWFNDAKGFGFIQQDNGGPDVFVHFSAIKAEGFKTLREGQAVEFDI 52
>gi|350272018|ref|YP_004883326.1| cold shock protein [Oscillibacter valericigenes Sjm18-20]
gi|348596860|dbj|BAL00821.1| cold shock protein [Oscillibacter valericigenes Sjm18-20]
Length = 70
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F KG GFI+ D+GE VFVH S I +G G +V + + P
Sbjct: 1 MNSGTVKWFNSEKGFGFISNDNGEEDVFVHFSAIASDGYKSLEDGQKVTFDIEKDPKDGR 60
Query: 116 KNQAVHVEIV 125
K +AV+V I
Sbjct: 61 KFRAVNVHIA 70
>gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
Length = 67
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFI PD G VFVH S+I+G +R E+NQ
Sbjct: 3 TGTVKWFNAEKGFGFIAPDDGSSDVFVHYSEIQGS---------GFRTL------EENQQ 47
Query: 120 VHVEI 124
V EI
Sbjct: 48 VEFEI 52
>gi|118589799|ref|ZP_01547204.1| putative cold shock-like transcription regulator protein [Stappia
aggregata IAM 12614]
gi|118437885|gb|EAV44521.1| putative cold shock-like transcription regulator protein [Labrenzia
aggregata IAM 12614]
Length = 70
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
E G IK F +G GFITP++G VFVHI+ E G P+ G ++ + + +
Sbjct: 3 ENGTIKFFNHDRGFGFITPENGSKDVFVHITAFEQAGIGTPVEGAKISF-VAEDDRRGRG 61
Query: 117 NQAVHVEIV 125
QA +E++
Sbjct: 62 KQAAQLELL 70
>gi|359795254|ref|ZP_09297879.1| cold shock protein CspB [Achromobacter arsenitoxydans SY8]
gi|359366673|gb|EHK68345.1| cold shock protein CspB [Achromobacter arsenitoxydans SY8]
Length = 68
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCPIP 111
+ GK+K F KG GFITPD G VF H S I+G Y L G EV++ + P
Sbjct: 2 AQKGKVKWFNADKGFGFITPDVGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
>gi|237746308|ref|ZP_04576788.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
gi|229377659|gb|EEO27750.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
Length = 67
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ETG +K F SKG GFITPDS +F H S+I+G
Sbjct: 1 METGTVKWFNDSKGFGFITPDSHGADLFAHFSEIQGS 37
>gi|358635318|dbj|BAL22615.1| cold shock-like protein [Azoarcus sp. KH32C]
Length = 67
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKY 105
+ TG +K F +KG+GFITPD+G +F H S I+G + L G +V+Y
Sbjct: 1 MATGTVKWFNDAKGYGFITPDNGGEDLFAHFSAIQGNGFRSLAEGQKVQY 50
>gi|124267389|ref|YP_001021393.1| cold-shock DNA-binding protein family protein [Methylibium
petroleiphilum PM1]
gi|124260164|gb|ABM95158.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
PM1]
Length = 69
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
V+TG +K F +KG GFI D G VF H DI+G
Sbjct: 3 VQTGTVKWFNEAKGFGFIAQDGGGADVFAHFRDIQG 38
>gi|440222457|ref|YP_007335862.1| cold-shock protein CspA [Rhizobium tropici CIAT 899]
gi|440040604|gb|AGB73316.1| cold-shock protein CspA [Rhizobium tropici CIAT 899]
Length = 67
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLPGDEVKYRL 107
TGK+K F KG GFITP+SG VFVH++ ++ G Y+ G V Y L
Sbjct: 3 TGKVKFFNADKGFGFITPESGGGDVFVHVTALQYGDYLR-EGQSVSYDL 50
>gi|334131758|ref|ZP_08505520.1| Cold-shock DNA-binding domain protein [Methyloversatilis
universalis FAM5]
gi|333443231|gb|EGK71196.1| Cold-shock DNA-binding domain protein [Methyloversatilis
universalis FAM5]
Length = 210
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKY 105
+ G+++ + KG GFITPD G VFVH+S D+EG P GD V +
Sbjct: 3 KDGRLRSWKDDKGFGFITPDEGGEDVFVHVSAFDVEGRR-PAEGDRVSF 50
>gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594]
gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594]
Length = 253
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S L + +I +R R L TG +K F KG GF+ D G+P FVHI
Sbjct: 155 SAQDLQVVGDVIAVESRDSGPPKRELTGEKATGTVKFFNSMKGFGFLVRDDGQPDAFVHI 214
Query: 89 SDIE 92
S +E
Sbjct: 215 SAVE 218
>gi|424879796|ref|ZP_18303428.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516159|gb|EIW40891.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
Length = 69
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G+ FVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGDADAFVHISAVERAGMRDLVEGQKIGFDL 52
>gi|398830371|ref|ZP_10588564.1| cold shock protein [Phyllobacterium sp. YR531]
gi|398215113|gb|EJN01679.1| cold shock protein [Phyllobacterium sp. YR531]
Length = 69
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G FVHIS +E G + G ++ Y L
Sbjct: 1 MATGTVKWFDSTKGFGFIQPDDGGTDAFVHISAVERAGLRNIVEGQKISYELV 53
>gi|340778451|ref|ZP_08698394.1| cold-shock DNA-binding domain-containing protein [Acetobacter aceti
NBRC 14818]
Length = 68
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI P+ G P VFVHI+ +E G G ++ Y +
Sbjct: 3 TGTVKWFNSTKGFGFIQPEDGSPDVFVHITALERAGMASLNEGQQISYEI 52
>gi|146338131|ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS 278]
gi|365880481|ref|ZP_09419848.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS 375]
gi|365891190|ref|ZP_09429642.1| Cold shock protein, DNA binding [Bradyrhizobium sp. STM 3809]
gi|365897086|ref|ZP_09435119.1| Cold shock protein, DNA binding [Bradyrhizobium sp. STM 3843]
gi|367474854|ref|ZP_09474346.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS 285]
gi|146190937|emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS 278]
gi|365272849|emb|CCD86814.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS 285]
gi|365291466|emb|CCD92379.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS 375]
gi|365332883|emb|CCE02173.1| Cold shock protein, DNA binding [Bradyrhizobium sp. STM 3809]
gi|365422199|emb|CCE07661.1| Cold shock protein, DNA binding [Bradyrhizobium sp. STM 3843]
gi|456358121|dbj|BAM92566.1| DNA binding cold shock protein [Agromonas oligotrophica S58]
Length = 70
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG+GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 4 GTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVA 54
>gi|56477397|ref|YP_158986.1| cold shock transcriptional regulator [Aromatoleum aromaticum EbN1]
gi|56313440|emb|CAI08085.1| probably cold shock transcription regulator protein [Aromatoleum
aromaticum EbN1]
Length = 67
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKY 105
+ TG +K F SKG GFITPD+G +F H S I+G G +V+Y
Sbjct: 1 MATGTVKWFNDSKGFGFITPDNGGEDLFAHFSAIQGSGFKSLTEGQKVQY 50
>gi|393719798|ref|ZP_10339725.1| cold-shock DNA-binding domain-containing protein [Sphingomonas
echinoides ATCC 14820]
Length = 266
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL-PGDEVKYRL 107
R L TG +K F KG GFI D G+P FVHIS +E G L GD +++ L
Sbjct: 191 QRQLTGEKATGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERGGMTSLNEGDRLEFEL 249
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GF+ D G VFVHIS +E
Sbjct: 95 TGVVKFFNGQKGFGFVVRDDGGEDVFVHISAVE 127
>gi|297562583|ref|YP_003681557.1| cold-shock DNA-binding domain-containing protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296847031|gb|ADH69051.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 67
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI+PD G P FVH S I+G +R E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFISPDGGGPDAFVHYSAIQGT---------GFR------NLEENQRV 48
Query: 121 HVEIVHLT 128
E+V T
Sbjct: 49 EFEVVQGT 56
>gi|261212918|ref|ZP_05927202.1| cold shock protein CspG [Vibrio sp. RC341]
gi|262402962|ref|ZP_06079522.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
gi|260837983|gb|EEX64660.1| cold shock protein CspG [Vibrio sp. RC341]
gi|262350461|gb|EEY99594.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
Length = 70
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F SKG GFITPD G VFVH + I G G +V + +
Sbjct: 6 TGSVKWFNESKGFGFITPDIGGSDVFVHFNSIASGGVKTLFEGQKVNFSI 55
>gi|188583863|ref|YP_001927308.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
populi BJ001]
gi|179347361|gb|ACB82773.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 69
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F KG GFI P+ G VFVHIS +E G G +V Y L
Sbjct: 3 TGTVKWFNEQKGFGFIQPEDGSKDVFVHISAVERAGLRGLAEGQKVSYEL 52
>gi|92117674|ref|YP_577403.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800568|gb|ABE62943.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 68
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI-EGCYVPLPGDEVKYRLCPIP 111
++TG +K F KG+GFI PD G P +F+H+ + + P P D V+Y + P
Sbjct: 1 MQTGSVKFFNAEKGYGFIQPDDGTPDIFLHVHGLADKLRYPCPRDRVEYEVGKGP 55
>gi|222082689|ref|YP_002542054.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221727368|gb|ACM30457.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 74
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G FVHIS +E G + G ++ Y L
Sbjct: 8 TGTVKWFNSTKGFGFIQPDDGGADAFVHISAVERAGMREIVEGQKIAYEL 57
>gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM
5265]
Length = 84
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG+GFIT D GE VFVH S IEG
Sbjct: 20 AGTVKWFDAQKGYGFITRDDGEGDVFVHFSAIEG 53
>gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium
aromaticivorans DSM 12444]
Length = 267
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 52 RALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L +G +K F KG GFIT D G+P FVHIS +E G GD++++ L
Sbjct: 192 RELTGEKASGTVKFFNAMKGFGFITRDDGQPDAFVHISAVERSGLRELNEGDKLEFDL 249
>gi|408480172|ref|ZP_11186391.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
R81]
Length = 200
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 4 SPLPFENKKPA-LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+P+P PA L S +++ LH + SP ++T ++NR +TG
Sbjct: 84 APMPEVGGHPAILLSLVIAVVAIVLHLAISFYRSSP--AASSQTYDMTNR------DTGT 135
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
+K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 136 VKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 179
>gi|374623201|ref|ZP_09695715.1| cold-shock DNA-binding domain-containing protein
[Ectothiorhodospira sp. PHS-1]
gi|373942316|gb|EHQ52861.1| cold-shock DNA-binding domain-containing protein
[Ectothiorhodospira sp. PHS-1]
Length = 68
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI P G VFVH S I +G G +V Y++ P
Sbjct: 1 MSTGTVKWFNETKGFGFIAPADGGADVFVHYSAINSDGFKTLAEGQKVNYQVQQGPKGL- 59
Query: 116 KNQAVHVEI 124
QAV+V I
Sbjct: 60 --QAVNVTI 66
>gi|167648239|ref|YP_001685902.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
K31]
gi|399073528|ref|ZP_10750548.1| cold shock protein [Caulobacter sp. AP07]
gi|167350669|gb|ABZ73404.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
gi|398041495|gb|EJL34557.1| cold shock protein [Caulobacter sp. AP07]
Length = 68
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNGTKGFGFIQPDDGGADVFVHISAVERAGLRGLDEGQKITYEL 52
>gi|407715861|ref|YP_006837141.1| cold shock-like protein CspC2 [Cycloclasticus sp. P1]
gi|407256197|gb|AFT66638.1| Cold shock-like protein CspC2 [Cycloclasticus sp. P1]
Length = 66
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F SKG GFITP+ G VFVH S I EG G +V + +
Sbjct: 3 TGTVKWFNESKGFGFITPEDGSKDVFVHFSAIASEGFRTLNEGQQVNFDV 52
>gi|393768440|ref|ZP_10356979.1| DNA-binding cold-shock protein [Methylobacterium sp. GXF4]
gi|392726090|gb|EIZ83416.1| DNA-binding cold-shock protein [Methylobacterium sp. GXF4]
Length = 69
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG GFI PD G VFVHIS +E G + G ++ Y L
Sbjct: 4 GTVKWFNETKGFGFIQPDDGGKDVFVHISAVERAGMRNLIEGQKLSYEL 52
>gi|398912071|ref|ZP_10655819.1| cold shock protein [Pseudomonas sp. GM49]
gi|398182824|gb|EJM70326.1| cold shock protein [Pseudomonas sp. GM49]
Length = 200
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 4 SPLPFENKKPA-LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+P+P +PA L S + + LH + SP+ + + +SNR +TG
Sbjct: 84 APMPVIAGQPAVLFSLIAAVVAVFLHLAISFYKSSPVAA--SPSYDMSNR------DTGT 135
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
+K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 136 VKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 179
>gi|395786666|ref|ZP_10466393.1| cold shock protein CspA [Bartonella tamiae Th239]
gi|423716440|ref|ZP_17690630.1| cold shock protein CspA [Bartonella tamiae Th307]
gi|395422964|gb|EJF89160.1| cold shock protein CspA [Bartonella tamiae Th239]
gi|395429369|gb|EJF95437.1| cold shock protein CspA [Bartonella tamiae Th307]
Length = 69
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MSTGTVKWFNTTKGFGFIQPDDGGADVFVHISAVE 35
>gi|386394781|ref|ZP_10079560.1| cold shock protein [Bradyrhizobium sp. WSM1253]
gi|386401381|ref|ZP_10086159.1| cold shock protein [Bradyrhizobium sp. WSM1253]
gi|385742007|gb|EIG62203.1| cold shock protein [Bradyrhizobium sp. WSM1253]
gi|385743457|gb|EIG63652.1| cold shock protein [Bradyrhizobium sp. WSM1253]
Length = 66
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
+ TG +K F +KG+GFI PD G VFVHIS +E G G +V Y + K
Sbjct: 1 MATGIVKWFNATKGYGFIQPDDGGKDVFVHISAVEKAGFSGLAEGAKVSYEIVSDRGK 58
>gi|300309840|ref|YP_003773932.1| cold-shock transcription regulator protein [Herbaspirillum
seropedicae SmR1]
gi|300072625|gb|ADJ62024.1| cold-shock transcription regulator protein [Herbaspirillum
seropedicae SmR1]
Length = 70
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+TG +K F +KG GFITPD+G VF H DI+
Sbjct: 4 QTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQ 37
>gi|86748914|ref|YP_485410.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris HaA2]
gi|91977978|ref|YP_570637.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisB5]
gi|148258227|ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|192292560|ref|YP_001993165.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris TIE-1]
gi|86571942|gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
gi|91684434|gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
gi|146410400|gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
gi|192286309|gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 70
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG+GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 4 GTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVA 54
>gi|398931391|ref|ZP_10665164.1| cold shock protein [Pseudomonas sp. GM48]
gi|398163673|gb|EJM51826.1| cold shock protein [Pseudomonas sp. GM48]
Length = 200
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 4 SPLPFENKKPA-LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGK 62
+P+P +PA L S + + LH + SP+ + + +SNR +TG
Sbjct: 84 APMPVIAGQPAVLFSLIAAVVAVFLHLAISFYKSSPVAA--SPSYDMSNR------DTGT 135
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
+K F SKG GFI+ DSG+ +FVH I EG V + G V++
Sbjct: 136 VKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQRVEF 179
>gi|309779238|ref|ZP_07674001.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
gi|404395591|ref|ZP_10987392.1| cold shock-like protein CspA [Ralstonia sp. 5_2_56FAA]
gi|308922042|gb|EFP67676.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
gi|348616346|gb|EGY65848.1| cold shock-like protein CspA [Ralstonia sp. 5_2_56FAA]
Length = 67
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 1 MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGS 37
>gi|57239424|ref|YP_180560.1| cold shock-like protein cspA [Ehrlichia ruminantium str.
Welgevonden]
gi|58579396|ref|YP_197608.1| cold shock-like protein cspA [Ehrlichia ruminantium str.
Welgevonden]
gi|58617451|ref|YP_196650.1| cold shock-like protein cspA [Ehrlichia ruminantium str. Gardel]
gi|57161503|emb|CAH58429.1| hypothetical protein Erum6970 [Ehrlichia ruminantium str.
Welgevonden]
gi|58417063|emb|CAI28176.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
Gardel]
gi|58418022|emb|CAI27226.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
Welgevonden]
Length = 95
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPA---------VFVHISDIEGCYVP-- 97
+S R + + + TG +K F KG+GFI D G+ +FVHI+ ++ +
Sbjct: 9 MSQRLVDDSIYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISEL 68
Query: 98 LPGDEVKYRLCPIPPKFEKNQAVHVEIV 125
G +VKY+L KF A+++E++
Sbjct: 69 KEGQKVKYQLDKNNGKFS---AINLEVL 93
>gi|408789458|ref|ZP_11201138.1| cold shock protein, partial [Rhizobium lupini HPC(L)]
gi|408484676|gb|EKJ93050.1| cold shock protein, partial [Rhizobium lupini HPC(L)]
Length = 129
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 61 MNTGTVKWFNATKGFGFIQPDNGGTDVFVHISAVERAGMRSLNDGQKISYEI 112
>gi|332306352|ref|YP_004434203.1| cold-shock DNA-binding domain-containing protein [Glaciecola sp.
4H-3-7+YE-5]
gi|410617600|ref|ZP_11328565.1| cold shock-like protein cspD [Glaciecola polaris LMG 21857]
gi|410625164|ref|ZP_11335952.1| cold shock-like protein cspD [Glaciecola mesophila KMM 241]
gi|410641510|ref|ZP_11352030.1| cold shock-like protein cspD [Glaciecola chathamensis S18K6]
gi|410645250|ref|ZP_11355717.1| cold shock-like protein cspD [Glaciecola agarilytica NO2]
gi|332173681|gb|AEE22935.1| cold-shock DNA-binding domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410135180|dbj|GAC04116.1| cold shock-like protein cspD [Glaciecola agarilytica NO2]
gi|410139043|dbj|GAC10217.1| cold shock-like protein cspD [Glaciecola chathamensis S18K6]
gi|410155295|dbj|GAC22721.1| cold shock-like protein cspD [Glaciecola mesophila KMM 241]
gi|410162731|dbj|GAC32703.1| cold shock-like protein cspD [Glaciecola polaris LMG 21857]
Length = 72
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
GK+K F +KG GFI P+ G +F H S I EG G EVKY + P
Sbjct: 3 VGKVKWFNNAKGFGFIVPEDGGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGP------ 56
Query: 118 QAVHVEIVHLTPE 130
+ +H E + E
Sbjct: 57 KGLHAENIDFNGE 69
>gi|409404390|ref|ZP_11252869.1| cold-shock transcription regulator protein [Herbaspirillum sp.
GW103]
gi|415908553|ref|ZP_11553015.1| putative Cold-shock DNA-binding domain protein [Herbaspirillum
frisingense GSF30]
gi|386435909|gb|EIJ48732.1| cold-shock transcription regulator protein [Herbaspirillum sp.
GW103]
gi|407762745|gb|EKF71534.1| putative Cold-shock DNA-binding domain protein [Herbaspirillum
frisingense GSF30]
Length = 69
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+TG +K F +KG GFITPD+G VF H DI+
Sbjct: 4 QTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQ 37
>gi|374314184|ref|YP_005060613.1| RNA chaperone, transcription antiterminator [Serratia symbiotica
str. 'Cinara cedri']
gi|363988410|gb|AEW44601.1| RNA chaperone, transcription antiterminator [Serratia symbiotica
str. 'Cinara cedri']
Length = 95
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP+ G VFVH S I+G
Sbjct: 32 GQVKWFNESKGFGFITPNDGSKDVFVHFSAIQG 64
>gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
25827]
gi|188020731|gb|EDU58771.1| cold-shock DNA-binding domain protein [Providencia stuartii ATCC
25827]
Length = 85
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
G++K F SKG GFITP G VFVH S I+G
Sbjct: 22 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGA 55
>gi|68006761|ref|XP_670490.1| cold-shock protein [Plasmodium berghei strain ANKA]
gi|56485793|emb|CAH94919.1| cold-shock protein, putative [Plasmodium berghei]
Length = 84
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 48 SISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
S+ NR N + TG + +F + KG+GFI P+ G P VFVH ++I
Sbjct: 21 SLINREQNNKI-TGNVIKFDKRKGYGFIKPNDGGPDVFVHYTEI 63
>gi|154496406|ref|ZP_02035102.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
29799]
gi|150274489|gb|EDN01566.1| cold-shock DNA-binding domain protein [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 70
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG GFI+ D G VFVH S I +G G +V Y P P K +
Sbjct: 4 GTVKWFNETKGFGFISNDDGSGDVFVHFSAILVDGFKTLAEGQKVSYDTEPDPKDAGKLR 63
Query: 119 AVHV 122
AV+V
Sbjct: 64 AVNV 67
>gi|159042565|ref|YP_001531359.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
shibae DFL 12]
gi|157910325|gb|ABV91758.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
12]
Length = 68
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 1 MATGTVKWFNATKGFGFIAPDGGSRDVFVHISAVE 35
>gi|116255743|ref|YP_771576.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209546040|ref|YP_002277930.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|241666510|ref|YP_002984594.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|402487164|ref|ZP_10833989.1| cold shock protein [Rhizobium sp. CCGE 510]
gi|424875164|ref|ZP_18298826.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|424877991|ref|ZP_18301631.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|424884452|ref|ZP_18308067.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|424891549|ref|ZP_18315132.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424919969|ref|ZP_18343332.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|115260391|emb|CAK03495.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209538897|gb|ACI58830.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|240861967|gb|ACS59632.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|392520483|gb|EIW45212.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|392848984|gb|EJB01506.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|393170865|gb|EJC70912.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393178151|gb|EJC78191.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393185544|gb|EJC85580.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|401813994|gb|EJT06331.1| cold shock protein [Rhizobium sp. CCGE 510]
Length = 69
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD G FVHIS +E G + G ++ Y L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDDGGADAFVHISAVERAGMREIVEGQKIGYEL 52
>gi|150376596|ref|YP_001313192.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|334318846|ref|YP_004551405.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|384532829|ref|YP_005718433.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|384540066|ref|YP_005724149.1| cold shock protein [Sinorhizobium meliloti SM11]
gi|407690333|ref|YP_006813917.1| hypothetical protein BN406_03828 [Sinorhizobium meliloti Rm41]
gi|410689281|ref|YP_006962885.1| hypothetical protein [Sinorhizobium meliloti]
gi|418403063|ref|ZP_12976562.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|433615232|ref|YP_007192029.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|433615431|ref|YP_007192227.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|150031143|gb|ABR63259.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|333815005|gb|AEG07673.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|334099273|gb|AEG57282.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|336035409|gb|AEH81340.1| cold shock protein [Sinorhizobium meliloti SM11]
gi|359503024|gb|EHK75587.1| cold shock protein [Sinorhizobium meliloti CCNWSX0020]
gi|387582764|gb|AFJ91563.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti]
gi|407321508|emb|CCM70110.1| unnamed protein product [Sinorhizobium meliloti Rm41]
gi|429553431|gb|AGA08430.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|429553645|gb|AGA08628.1| Cold shock protein [Sinorhizobium meliloti GR4]
Length = 69
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ Y L
Sbjct: 3 TGTVKWFNSTKGFGFIEPDNGGADAFVHISAVERAGMREIVEGQKLSYEL 52
>gi|359789752|ref|ZP_09292686.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359254355|gb|EHK57372.1| cold-shock DNA-binding domain-containing protein [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 70
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G VFVHIS +E G + G ++ + +
Sbjct: 1 MATGTVKWFNGTKGFGFIQPDNGGADVFVHISAVERAGMSNLVEGQKINFEI 52
>gi|308178448|ref|YP_003917854.1| cold shock protein [Arthrobacter arilaitensis Re117]
gi|307745911|emb|CBT76883.1| cold shock protein [Arthrobacter arilaitensis Re117]
Length = 67
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
TG +K F KG GFI PDSG+P VF H S I +G G +V++ + P
Sbjct: 3 TGIVKWFNAEKGFGFIAPDSGDPDVFAHFSAIQTQGFRTLDEGQKVEFEVVEGP 56
>gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
Length = 67
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFI PD G VFVH S+I+G
Sbjct: 3 TGTVKWFNAEKGFGFIAPDDGSADVFVHYSEIQG 36
>gi|226359632|ref|YP_002777410.1| cold shock protein [Rhodococcus opacus B4]
gi|226238117|dbj|BAH48465.1| cold shock protein [Rhodococcus opacus B4]
Length = 81
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKF 114
+ TG ++ F +G GF+ P G VFVH+S+I +G + + G V + +C
Sbjct: 14 ALRTGTVRWFNADQGFGFLAPADGSDDVFVHVSEIAGDGHRILVEGQRVSFTVCRTDT-- 71
Query: 115 EKNQAVHVEI 124
NQA V I
Sbjct: 72 -GNQARDVRI 80
>gi|424887068|ref|ZP_18310676.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|424887441|ref|ZP_18311046.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393175213|gb|EJC75256.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393176419|gb|EJC76461.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 69
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ Y L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMREIVEGQKIGYDL 52
>gi|348174397|ref|ZP_08881291.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora spinosa NRRL 18395]
Length = 67
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TGK+K F KG+GFITPD G VF H S I+
Sbjct: 3 TGKVKWFNAEKGYGFITPDGGGADVFAHYSAIQ 35
>gi|126724626|ref|ZP_01740469.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126705790|gb|EBA04880.1| cold-shock DNA-binding domain protein [Rhodobacteraceae bacterium
HTCC2150]
Length = 68
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG+GFI PD+G VFVHIS +E
Sbjct: 4 GTVKWFNSTKGYGFIAPDAGGNDVFVHISAVE 35
>gi|163853346|ref|YP_001641389.1| DNA-binding cold-shock protein [Methylobacterium extorquens PA1]
gi|218532203|ref|YP_002423019.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium extorquens CM4]
gi|240140762|ref|YP_002965242.1| cold shock protein A [Methylobacterium extorquens AM1]
gi|254563272|ref|YP_003070367.1| cold shock protein A [Methylobacterium extorquens DM4]
gi|418057987|ref|ZP_12695969.1| cold-shock DNA-binding domain protein [Methylobacterium
extorquens DSM 13060]
gi|163664951|gb|ABY32318.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218524506|gb|ACK85091.1| cold-shock DNA-binding domain protein [Methylobacterium
extorquens CM4]
gi|240010739|gb|ACS41965.1| cold shock protein A [Methylobacterium extorquens AM1]
gi|254270550|emb|CAX26553.1| cold shock protein A [Methylobacterium extorquens DM4]
gi|373568440|gb|EHP94387.1| cold-shock DNA-binding domain protein [Methylobacterium
extorquens DSM 13060]
Length = 69
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F KG+GFI PD+G VFVHIS ++
Sbjct: 1 MQTGTVKWFDEVKGYGFIQPDTGGKDVFVHISAVQ 35
>gi|395786682|ref|ZP_10466409.1| hypothetical protein ME5_01727 [Bartonella tamiae Th239]
gi|423716424|ref|ZP_17690614.1| hypothetical protein MEG_00154 [Bartonella tamiae Th307]
gi|395422980|gb|EJF89176.1| hypothetical protein ME5_01727 [Bartonella tamiae Th239]
gi|395429353|gb|EJF95421.1| hypothetical protein MEG_00154 [Bartonella tamiae Th307]
Length = 72
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+TG++K F KG GFI PD G +FVHIS ++ + D K P + K
Sbjct: 2 AQTGEVKFFNNDKGFGFIKPDDGGADIFVHISAVQESGLTGLNDAQKVSFDTEPDRRGKG 61
Query: 118 -QAVHVEIVH 126
+AV++ +++
Sbjct: 62 PKAVNISVIN 71
>gi|374575604|ref|ZP_09648700.1| cold shock protein [Bradyrhizobium sp. WSM471]
gi|374423925|gb|EHR03458.1| cold shock protein [Bradyrhizobium sp. WSM471]
Length = 69
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
TG +K F KG GFI PD G VFVHIS +E G G +V + +
Sbjct: 3 TGTVKWFNSQKGFGFIQPDEGSQDVFVHISAVERAGMNTLNEGQKVSFEIVA 54
>gi|73539164|ref|YP_299531.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|94314737|ref|YP_587946.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
CH34]
gi|116693962|ref|YP_728173.1| cold-shock protein, DNA-binding [Ralstonia eutropha H16]
gi|188591849|ref|YP_001796447.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
gi|339321332|ref|YP_004680226.1| cold-shock DNA-binding protein family [Cupriavidus necator N-1]
gi|374367674|ref|ZP_09625733.1| cold-shock DNA-binding protein family [Cupriavidus basilensis
OR16]
gi|430807636|ref|ZP_19434751.1| cold-shock DNA-binding protein family [Cupriavidus sp. HMR-1]
gi|72122501|gb|AAZ64687.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
gi|93358589|gb|ABF12677.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
CH34]
gi|113528461|emb|CAJ94808.1| Cold-shock protein, DNA-binding [Ralstonia eutropha H16]
gi|170938223|emb|CAP63208.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
gi|338167940|gb|AEI78994.1| cold-shock DNA-binding protein family [Cupriavidus necator N-1]
gi|373100610|gb|EHP41672.1| cold-shock DNA-binding protein family [Cupriavidus basilensis
OR16]
gi|429500067|gb|EKZ98453.1| cold-shock DNA-binding protein family [Cupriavidus sp. HMR-1]
Length = 67
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 1 MATGTVKWFNETKGFGFITPDDGGADLFAHFSEIQGS 37
>gi|260428302|ref|ZP_05782281.1| conserved domain protein [Citreicella sp. SE45]
gi|260422794|gb|EEX16045.1| conserved domain protein [Citreicella sp. SE45]
Length = 68
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI P+ G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPEGGSKDVFVHISAVE 35
>gi|34498661|ref|NP_902876.1| cold shock transcription regulator protein [Chromobacterium
violaceum ATCC 12472]
gi|34104514|gb|AAQ60872.1| cold shock transcription regulator protein [Chromobacterium
violaceum ATCC 12472]
Length = 110
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 16 SSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFI 75
S M S + + ++ +SL R E N + TG +K F SKG GFI
Sbjct: 8 SCVMCSCRSGNSRTSVAISLDLRAFYSTARFEEF------NKMATGTVKWFNDSKGFGFI 61
Query: 76 TPDSGEPAVFVHISDI 91
TPD G VF H S I
Sbjct: 62 TPDEGGDDVFAHFSQI 77
>gi|386819571|ref|ZP_10106787.1| cold shock protein [Joostella marina DSM 19592]
gi|386424677|gb|EIJ38507.1| cold shock protein [Joostella marina DSM 19592]
Length = 64
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
TG +K F SKG+GFIT D +FVH+++++G + GD+V+Y
Sbjct: 2 TGTVKFFNESKGYGFITNDETGKDIFVHVTELKGVELN-EGDKVEY 46
>gi|384920643|ref|ZP_10020649.1| cold shock protein CspA-like protein [Citreicella sp. 357]
gi|384465491|gb|EIE50030.1| cold shock protein CspA-like protein [Citreicella sp. 357]
Length = 68
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD+G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDNGGKDVFVHISAVE 35
>gi|381200271|ref|ZP_09907411.1| cold-shock DNA-binding protein family protein [Sphingobium
yanoikuyae XLDN2-5]
gi|427408031|ref|ZP_18898233.1| hypothetical protein HMPREF9718_00707 [Sphingobium yanoikuyae ATCC
51230]
gi|425713370|gb|EKU76383.1| hypothetical protein HMPREF9718_00707 [Sphingobium yanoikuyae ATCC
51230]
Length = 71
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F KG+GFI PD+G FVHIS +E G D V Y L
Sbjct: 5 TGTVKFFNADKGYGFIEPDTGGQDAFVHISAVERAGLATLREKDRVTYDL 54
>gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
11568]
gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
11568]
Length = 173
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKYRLCPIP 111
P+E +K F R+KG+GF+ D +FVH+ + C + LPGD V R P
Sbjct: 103 DGPLEAAVVKWFNRTKGYGFVVRDGQAGDIFVHVETLRRCGLDDLLPGDPVNVRFAEGP 161
>gi|433645591|ref|YP_007290593.1| cold shock protein [Mycobacterium smegmatis JS623]
gi|433295368|gb|AGB21188.1| cold shock protein [Mycobacterium smegmatis JS623]
Length = 67
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
G +K F KG GFITPD G VFVH S+I+G
Sbjct: 4 GTVKWFNGDKGFGFITPDDGAKDVFVHFSEIQGS 37
>gi|407368207|ref|ZP_11114739.1| protein CspG [Pseudomonas mandelii JR-1]
Length = 70
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
ETG +K F KG GFITPDSG +FVH IE G G V Y + K +K
Sbjct: 5 ETGIVKWFNDEKGFGFITPDSGGAELFVHFKAIESDGFKTLKEGQAVSY----VSEKGQK 60
Query: 117 NQ 118
Q
Sbjct: 61 GQ 62
>gi|365841323|ref|ZP_09382402.1| cold-shock DNA-binding domain protein [Flavonifractor plautii ATCC
29863]
gi|364577805|gb|EHM55052.1| cold-shock DNA-binding domain protein [Flavonifractor plautii ATCC
29863]
Length = 102
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG GFI+ D G VFVH S I +G G +V Y + P P +K +
Sbjct: 36 GTVKWFNETKGFGFISNDEGGDDVFVHFSAIVCDGFKTLQEGQKVTYDVEPDPKNADKLR 95
Query: 119 AVHV 122
AV+V
Sbjct: 96 AVNV 99
>gi|384213788|ref|YP_005604951.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|354952684|dbj|BAL05363.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
Length = 68
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F +KG+GFI PD G VFVHIS +E G + G +V Y L
Sbjct: 4 GTVKWFNPTKGYGFIAPDDGGNDVFVHISAVEKAGYTSLVEGAKVSYELV 53
>gi|336323549|ref|YP_004603516.1| cold-shock DNA-binding domain-containing protein [Flexistipes
sinusarabici DSM 4947]
gi|336107130|gb|AEI14948.1| cold-shock DNA-binding domain protein [Flexistipes sinusarabici DSM
4947]
Length = 67
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
TG +K F SKG+GFIT GE VFVH S I EG GDEV++ + P
Sbjct: 4 TGTVKWFNDSKGYGFITGSDGED-VFVHYSAISMEGFKSLKEGDEVEFEVVEGP 56
>gi|325168917|ref|YP_004280707.1| cold-shock protein [Agrobacterium sp. H13-3]
gi|418410990|ref|ZP_12984291.1| cold shock protein [Agrobacterium tumefaciens 5A]
gi|325064640|gb|ADY68329.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
gi|358002747|gb|EHJ95087.1| cold shock protein [Agrobacterium tumefaciens 5A]
Length = 69
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMRELVEGQKIGFEL 52
>gi|53717183|ref|YP_105587.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
23344]
gi|53722389|ref|YP_111374.1| cold shock-like protein [Burkholderia pseudomallei K96243]
gi|67640593|ref|ZP_00439394.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|76818479|ref|YP_335547.1| cold shock transcriptional regulator protein [Burkholderia
pseudomallei 1710b]
gi|121596928|ref|YP_990092.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
gi|124383143|ref|YP_001023992.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10229]
gi|126444073|ref|YP_001062939.1| hypothetical protein BURPS668_A1944 [Burkholderia pseudomallei
668]
gi|126447704|ref|YP_001078627.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10247]
gi|126455982|ref|YP_001075887.1| cold-shock domain-contain protein [Burkholderia pseudomallei
1106a]
gi|166999526|ref|ZP_02265363.1| cold-shock DNA-binding domain protein [Burkholderia mallei
PRL-20]
gi|167723959|ref|ZP_02407195.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
gi|167742930|ref|ZP_02415704.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
gi|167820105|ref|ZP_02451785.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
gi|167828481|ref|ZP_02459952.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
gi|167849936|ref|ZP_02475444.1| cold-shock domain family protein [Burkholderia pseudomallei
B7210]
gi|167898541|ref|ZP_02485942.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
gi|167906890|ref|ZP_02494095.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
13177]
gi|167915247|ref|ZP_02502338.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
gi|167923078|ref|ZP_02510169.1| cold-shock domain family protein [Burkholderia pseudomallei
BCC215]
gi|217425337|ref|ZP_03456831.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
gi|226199127|ref|ZP_03794689.1| cold-shock domain family protein [Burkholderia pseudomallei
Pakistan 9]
gi|237510263|ref|ZP_04522978.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|242312121|ref|ZP_04811138.1| cold-shock domain family protein [Burkholderia pseudomallei
1106b]
gi|254176187|ref|ZP_04882845.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
gi|254183753|ref|ZP_04890345.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|254186667|ref|ZP_04893183.1| cold-shock domain family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254194434|ref|ZP_04900866.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|254200381|ref|ZP_04906746.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|254263480|ref|ZP_04954345.1| cold-shock domain family protein [Burkholderia pseudomallei
1710a]
gi|254301649|ref|ZP_04969093.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|254356632|ref|ZP_04972907.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
gi|386865143|ref|YP_006278091.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1026b]
gi|403523117|ref|YP_006658686.1| cold-shock domain-contain protein [Burkholderia pseudomallei
BPC006]
gi|418550462|ref|ZP_13115443.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1258b]
gi|52212803|emb|CAH38835.1| putative cold shock-like protein [Burkholderia pseudomallei
K96243]
gi|52423153|gb|AAU46723.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
gi|76582952|gb|ABA52426.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|121224726|gb|ABM48257.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
gi|124291163|gb|ABN00433.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10229]
gi|126223564|gb|ABN87069.1| conserved domain protein [Burkholderia pseudomallei 668]
gi|126229750|gb|ABN93163.1| cold-shock domain family protein [Burkholderia pseudomallei
1106a]
gi|126240558|gb|ABO03670.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10247]
gi|147747993|gb|EDK55068.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|148025659|gb|EDK83782.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
gi|157810787|gb|EDO87957.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|157934351|gb|EDO90021.1| cold-shock domain family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|160697229|gb|EDP87199.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
gi|169651185|gb|EDS83878.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|184214286|gb|EDU11329.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|217391588|gb|EEC31616.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
gi|225928902|gb|EEH24927.1| cold-shock domain family protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002468|gb|EEP51892.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|238521343|gb|EEP84795.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|242135360|gb|EES21763.1| cold-shock domain family protein [Burkholderia pseudomallei
1106b]
gi|243064365|gb|EES46551.1| cold-shock DNA-binding domain protein [Burkholderia mallei
PRL-20]
gi|254214482|gb|EET03867.1| cold-shock domain family protein [Burkholderia pseudomallei
1710a]
gi|385351841|gb|EIF58293.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1258b]
gi|385662271|gb|AFI69693.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1026b]
gi|403078184|gb|AFR19763.1| cold-shock domain-contain protein [Burkholderia pseudomallei
BPC006]
Length = 67
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
++TG +K F +KG GFITPDSG +F H S+I
Sbjct: 1 MDTGTVKWFNETKGFGFITPDSGGDDLFAHFSEI 34
>gi|46206172|ref|ZP_00047626.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 69
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
++TG +K F KG+GFI P+ G VFVHIS +E G G +V Y
Sbjct: 1 MDTGTVKWFNEQKGYGFIQPEDGSKDVFVHISAVERAGLRGLTEGQKVSY 50
>gi|332295605|ref|YP_004437528.1| cold-shock DNA-binding domain-containing protein [Thermodesulfobium
narugense DSM 14796]
gi|332178708|gb|AEE14397.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 68
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
GK+K F KG+GFI+ D G VFVH S I+G +R E+ QAV
Sbjct: 4 GKVKWFNNEKGYGFISKDDGSGDVFVHYSAIQGK---------GFRTL------EQGQAV 48
Query: 121 HVEIV 125
EIV
Sbjct: 49 QFEIV 53
>gi|409439739|ref|ZP_11266778.1| putative cold shock protein y4cH [Rhizobium mesoamericanum
STM3625]
gi|408748576|emb|CCM77959.1| putative cold shock protein y4cH [Rhizobium mesoamericanum
STM3625]
Length = 69
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
TGK+K F + KG GFITPD G VF+HI+
Sbjct: 3 TGKVKWFNQDKGFGFITPDDGSTDVFLHIT 32
>gi|399995480|ref|YP_006575718.1| hypothetical protein SFHH103_04704 [Sinorhizobium fredii HH103]
gi|365182327|emb|CCE99177.1| hypothetical protein SFHH103_04704 [Sinorhizobium fredii HH103]
Length = 68
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG ++ F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVEWFNAAKGFGFIQPDDGSADVFVHISAVERAGMRGLNDGQKITYELVK 54
>gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 258
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 32 TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
T S P+P + R L +G +K F KG GFI D G+P FVHIS +
Sbjct: 163 TESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQRDDGQPDAFVHISAV 222
Query: 92 EGCYVPL--PGDEVKYRL 107
E +P GD + + L
Sbjct: 223 ERAGLPSLNEGDRLSFEL 240
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GF+ D G VFVHIS +E
Sbjct: 92 TGVVKFFNSQKGFGFVVRDDGGEDVFVHISAVE 124
>gi|291295051|ref|YP_003506449.1| cold-shock DNA-binding domain-containing protein [Meiothermus ruber
DSM 1279]
gi|290470010|gb|ADD27429.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM 1279]
Length = 75
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
++ GK+K F KG+GFI + GEP VFVH S I+ G GD V + + P
Sbjct: 1 MQKGKVKWFNAEKGYGFIQREEGEPDVFVHYSAIQSRGFRTLNEGDVVTFEIEP 54
>gi|83593249|ref|YP_427001.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|386349983|ref|YP_006048231.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum F11]
gi|83576163|gb|ABC22714.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
gi|346718419|gb|AEO48434.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum F11]
Length = 68
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD+G FVHI+ +E G + G V Y L
Sbjct: 1 MSTGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTYDL 52
>gi|378764682|ref|YP_005193298.1| putative cold-shock DNA-binding domain-containing protein
[Sinorhizobium fredii HH103]
gi|365184310|emb|CCF01159.1| putative cold-shock DNA-binding domain-containing protein
[Sinorhizobium fredii HH103]
Length = 68
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI P+ G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGFGFIQPNDGSADVFVHISAVERAGMRGLNDGQKITYELVK 54
>gi|288959551|ref|YP_003449892.1| cold shock protein [Azospirillum sp. B510]
gi|288911859|dbj|BAI73348.1| cold shock protein [Azospirillum sp. B510]
Length = 69
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG+GFI P++G VFVHI+ ++ G + G V++ + K+
Sbjct: 4 GTVKWFNTTKGYGFIAPEAGAKDVFVHITAVQRSGLHALSEGQRVQFEVA--RGNNGKDS 61
Query: 119 AVHVEIV 125
AV++ +V
Sbjct: 62 AVNISVV 68
>gi|126739741|ref|ZP_01755432.1| cold shock family protein [Roseobacter sp. SK209-2-6]
gi|126718973|gb|EBA15684.1| cold shock family protein [Roseobacter sp. SK209-2-6]
Length = 68
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG+GFI P+ G VFVHIS +E G +V Y L P
Sbjct: 1 MATGTVKWFNTTKGYGFIAPEDGGKDVFVHISAVERSGLTGLADNQKVSYELQP 54
>gi|187925980|ref|YP_001892325.1| cold-shock protein [Ralstonia pickettii 12J]
gi|241665465|ref|YP_002983824.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12D]
gi|187727734|gb|ACD28898.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|240867492|gb|ACS65152.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
Length = 67
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 1 MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGS 37
>gi|116254513|ref|YP_770349.1| cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841]
gi|115259161|emb|CAK10276.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
Length = 67
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ GD+V + + K K++A
Sbjct: 3 TGTVKFFNDDKGFGFITPETGGTDVFVHVSALQQGGSLREGDKVTFEVGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|313896973|ref|ZP_07830520.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320530494|ref|ZP_08031552.1| cold-shock DNA-binding domain protein [Selenomonas artemidis F0399]
gi|402302440|ref|ZP_10821552.1| cold shock protein CspD [Selenomonas sp. FOBRC9]
gi|427406423|ref|ZP_18896628.1| cold shock-like protein CspC [Selenomonas sp. F0473]
gi|312974420|gb|EFR39888.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320137327|gb|EFW29251.1| cold-shock DNA-binding domain protein [Selenomonas artemidis F0399]
gi|400380507|gb|EJP33324.1| cold shock protein CspD [Selenomonas sp. FOBRC9]
gi|425708242|gb|EKU71282.1| cold shock-like protein CspC [Selenomonas sp. F0473]
Length = 66
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKYRLC 108
TGK+K F KG+GFI+ D G+ VFVH S I+G Y L G EV++ +
Sbjct: 2 TGKVKWFSADKGYGFISRDDGDD-VFVHFSSIQGEGYKTLSEGQEVEFDIV 51
>gi|149928086|ref|ZP_01916333.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
gi|149823172|gb|EDM82409.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
Length = 73
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFITPD G +F H S I+ G G +V + + P +
Sbjct: 1 MATGTVKWFNDAKGFGFITPDQGSDELFAHFSAIQASGFRTLKEGQKVTFEVVDGP---K 57
Query: 116 KNQAVHVEIVHLT 128
QA ++ ++ T
Sbjct: 58 GKQAQNISVMDAT 70
>gi|396583694|ref|ZP_10484212.1| cold-shock DNA-binding domain protein [Actinomyces sp. ICM47]
gi|395548771|gb|EJG15976.1| cold-shock DNA-binding domain protein [Actinomyces sp. ICM47]
Length = 69
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI---EGCYVPLPGDEVKYRLCPIPPKFEK 116
TG IK F +KG GFITPD +FVH S I G L G+ V+Y + P +
Sbjct: 3 TGTIKWFNDAKGFGFITPDDESGDIFVHYSTIIGQSGRRTLLEGERVEYEVIEGPKGLQA 62
Query: 117 NQAVHVE 123
E
Sbjct: 63 MNVARTE 69
>gi|163744665|ref|ZP_02152025.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
gi|161381483|gb|EDQ05892.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
Length = 68
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD+G +FVHIS +E
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDTGGKDIFVHISAVE 35
>gi|116249765|ref|YP_765603.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254413|emb|CAK04052.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
Length = 68
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFDATKGSGFIQPDDGSIDVFVHISAVERAGRLGLNDGQKIAYELVK 54
>gi|94499669|ref|ZP_01306206.1| Cold shock protein [Bermanella marisrubri]
gi|94428423|gb|EAT13396.1| Cold shock protein [Oceanobacter sp. RED65]
Length = 92
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
++TGK+K F +KG+GFI D G +F H S I EG G V++ P
Sbjct: 1 MQTGKVKWFNNAKGYGFILSDEGGEDLFAHYSSIQVEGYKTLKAGQSVQFDTKP------ 54
Query: 116 KNQAVHVEIVHLTP 129
+Q H +++TP
Sbjct: 55 SDQGTHA--INITP 66
>gi|17548223|ref|NP_521563.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|300693045|ref|YP_003749018.1| cold shock DNA binding transcription regulator [Ralstonia
solanacearum PSI07]
gi|410683950|ref|YP_006059957.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum CMR15]
gi|17430469|emb|CAD17153.1| probable cold shock-like transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|299068439|emb|CBJ39662.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum CMR15]
gi|299075082|emb|CBJ34363.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum PSI07]
gi|344171197|emb|CCA83674.1| cold shock DNA binding protein (transcription regulator) [blood
disease bacterium R229]
gi|344176163|emb|CCA87327.1| cold shock DNA binding protein (transcription regulator)
[Ralstonia syzygii R24]
Length = 67
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 1 MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGS 37
>gi|451936393|ref|YP_007460247.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777316|gb|AGF48291.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 82
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKNQ 118
G +K F +KG GFITPD+G +F H S IE G G +V Y P + Q
Sbjct: 19 GTVKWFNDAKGFGFITPDNGGEEIFAHFSSIEMDGFKTLKEGQKVSYETVQGP---KGKQ 75
Query: 119 AVHV 122
A+++
Sbjct: 76 ALNI 79
>gi|61680881|pdb|2BH8|A Chain A, Combinatorial Protein 1b11
gi|61680882|pdb|2BH8|B Chain B, Combinatorial Protein 1b11
Length = 101
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS-DIEGCYV---PLPGDEVKYRLCP 109
LQ+ TG +K F KG GFITPD G VFVH S G V P GD V+ ++
Sbjct: 12 LQSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKS 71
Query: 110 IPP 112
I
Sbjct: 72 ITD 74
>gi|392380730|ref|YP_005029926.1| cold shock protein, DNA binding [Azospirillum brasilense Sp245]
gi|356875694|emb|CCC96442.1| cold shock protein, DNA binding [Azospirillum brasilense Sp245]
Length = 69
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG+GFI P++G VFVHI+ ++ G + G V++ + K+
Sbjct: 3 TGTVKWFNTTKGYGFIAPEAGAKDVFVHITAVQKSGLHALSEGQRVEFEVA--RGNNGKD 60
Query: 118 QAVHVEIV 125
AV++ ++
Sbjct: 61 AAVNISVM 68
>gi|347757060|ref|YP_004864622.1| Cold-shock' DNA-binding domain-containing protein [Micavibrio
aeruginosavorus ARL-13]
gi|347589578|gb|AEP08620.1| 'Cold-shock' DNA-binding domain protein [Micavibrio aeruginosavorus
ARL-13]
Length = 68
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
+ TG +K F +KG+GFI PD G VF+HI+ +E G G ++ Y L K
Sbjct: 1 MATGTVKWFNTTKGYGFIQPDDGGSDVFIHITALEQAGIRGLKEGQKLSYELVTSRGK 58
>gi|407803333|ref|ZP_11150169.1| cold-shock domain-contain protein [Alcanivorax sp. W11-5]
gi|407022702|gb|EKE34453.1| cold-shock domain-contain protein [Alcanivorax sp. W11-5]
Length = 90
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TGK+K F +KG+GFI PD+G +FVH S I+
Sbjct: 1 MATGKVKWFNNAKGYGFIRPDAGGEDLFVHYSYIQ 35
>gi|398383300|ref|ZP_10541372.1| cold shock protein [Sphingobium sp. AP49]
gi|397725018|gb|EJK85475.1| cold shock protein [Sphingobium sp. AP49]
Length = 71
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F KG+GFI PD+G FVHIS +E G D V Y L
Sbjct: 5 TGVVKFFNADKGYGFIAPDNGGQDAFVHISAVERAGLATLREKDRVSYDL 54
>gi|224105199|ref|XP_002313723.1| predicted protein [Populus trichocarpa]
gi|222850131|gb|EEE87678.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
GK+K F KG GFITPD G +FVH S I EG G+EV++ +
Sbjct: 1 GKVKWFSDQKGFGFITPDDGGDDLFVHQSSIKSEGYRSLGDGEEVEFEI 49
>gi|115525742|ref|YP_782653.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisA53]
gi|209886524|ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5]
gi|299132279|ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|337739953|ref|YP_004631681.1| cold shock protein CspA [Oligotropha carboxidovorans OM5]
gi|386028971|ref|YP_005949746.1| cold shock protein CspA [Oligotropha carboxidovorans OM4]
gi|414165167|ref|ZP_11421414.1| cold shock protein CspA [Afipia felis ATCC 53690]
gi|414170094|ref|ZP_11425708.1| cold shock protein CspA [Afipia clevelandensis ATCC 49720]
gi|414176155|ref|ZP_11430384.1| cold shock protein CspA [Afipia broomeae ATCC 49717]
gi|115519689|gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
gi|209874720|gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5]
gi|298592416|gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|336094039|gb|AEI01865.1| cold shock protein CspA [Oligotropha carboxidovorans OM4]
gi|336097617|gb|AEI05440.1| cold shock protein CspA [Oligotropha carboxidovorans OM5]
gi|410882947|gb|EKS30787.1| cold shock protein CspA [Afipia felis ATCC 53690]
gi|410884766|gb|EKS32586.1| cold shock protein CspA [Afipia clevelandensis ATCC 49720]
gi|410886308|gb|EKS34120.1| cold shock protein CspA [Afipia broomeae ATCC 49717]
Length = 70
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG+GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 4 GTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVA 54
>gi|259418300|ref|ZP_05742218.1| conserved domain protein [Silicibacter sp. TrichCH4B]
gi|259345695|gb|EEW57539.1| conserved domain protein [Silicibacter sp. TrichCH4B]
Length = 68
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIEPDEGGKDVFVHISAVE 35
>gi|84502886|ref|ZP_01000999.1| cold shock family protein [Oceanicola batsensis HTCC2597]
gi|84388869|gb|EAQ01739.1| cold shock family protein [Oceanicola batsensis HTCC2597]
Length = 68
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI P+ G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGYGFIAPEGGSKDVFVHISAVE 35
>gi|409397992|ref|ZP_11248844.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
Chol1]
gi|409117498|gb|EKM93926.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
Chol1]
Length = 234
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
G +K + KG GFI P+ G VF HIS + G PL GD V Y
Sbjct: 5 GTLKSWNDLKGFGFIRPEQGGEDVFAHISVVHGERRPLVGDRVLY 49
>gi|260774268|ref|ZP_05883183.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
gi|260611229|gb|EEX36433.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
Length = 70
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F +KG GF+TPD+G VFVH + I EG G +V + +
Sbjct: 6 TGSVKWFNETKGFGFLTPDNGGSDVFVHFNSIASEGFKTLAEGQKVSFNV 55
>gi|325286936|ref|YP_004262726.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324322390|gb|ADY29855.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
7489]
Length = 63
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
G +K F SKG GFITPD G VFVHIS + + GD+V Y +
Sbjct: 3 NGTVKFFNDSKGFGFITPDDGGKDVFVHISGL--THEIAEGDKVSYDV 48
>gi|302878597|ref|YP_003847161.1| cold-shock DNA-binding domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302581386|gb|ADL55397.1| cold-shock DNA-binding domain protein [Gallionella
capsiferriformans ES-2]
Length = 68
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F KG GFI+PD G +F H S +I G G ++ + + P +
Sbjct: 1 MATGTVKWFNDEKGFGFISPDDGGDDLFAHFSAINISGFKSLKEGQKISFDVAQGP---K 57
Query: 116 KNQAVHVEIVH 126
QA +++IVH
Sbjct: 58 GRQASNIQIVH 68
>gi|383813905|ref|ZP_09969328.1| cold shock protein [Serratia sp. M24T3]
gi|383297103|gb|EIC85414.1| cold shock protein [Serratia sp. M24T3]
Length = 69
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
TG++K F SKG GFITP G VFVH S I +G G V++ + P
Sbjct: 5 TGQVKWFNESKGFGFITPADGSKDVFVHFSAINSDGFKTLAEGQNVEFTIQDSP 58
>gi|383772503|ref|YP_005451569.1| cold shock protein [Bradyrhizobium sp. S23321]
gi|381360627|dbj|BAL77457.1| cold shock protein [Bradyrhizobium sp. S23321]
Length = 69
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F KG+GFI PD G+ VFVHIS +E
Sbjct: 4 GTVKWFNTQKGYGFIQPDDGQKDVFVHISAVE 35
>gi|294636209|ref|ZP_06714624.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|291090490|gb|EFE23051.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
Length = 97
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
+TG++K F SKG GFITP G VFVH S I+ G G +V++ + P
Sbjct: 32 KTGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSP 86
>gi|163794103|ref|ZP_02188076.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
gi|159180717|gb|EDP65236.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
Length = 68
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
TG +K F +KG+GFI PD G VFVHI+ ++ G G + Y + P
Sbjct: 3 TGTVKWFNTTKGYGFIKPDDGGADVFVHITAVQRSGLQGLNEGQAIMYEMKP 54
>gi|154245503|ref|YP_001416461.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154159588|gb|ABS66804.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 70
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F KG GFITPDSG FVHIS +E G G +V + L
Sbjct: 4 GTVKWFNAQKGFGFITPDSGGSDAFVHISAVERAGMSDLREGQKVAFELVT 54
>gi|27379097|ref|NP_770626.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|384219522|ref|YP_005610688.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|398825598|ref|ZP_10583883.1| cold shock protein [Bradyrhizobium sp. YR681]
gi|421600307|ref|ZP_16043343.1| cold shock protein [Bradyrhizobium sp. CCGE-LA001]
gi|27352247|dbj|BAC49251.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|354958421|dbj|BAL11100.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|398223137|gb|EJN09490.1| cold shock protein [Bradyrhizobium sp. YR681]
gi|404267583|gb|EJZ32227.1| cold shock protein [Bradyrhizobium sp. CCGE-LA001]
Length = 69
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F KG+GFI PD G+ VFVHIS +E
Sbjct: 4 GTVKWFNTQKGYGFIQPDDGQKDVFVHISAVE 35
>gi|89073384|ref|ZP_01159908.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
gi|90579121|ref|ZP_01234931.1| putative cold shock-like protein CspD [Photobacterium angustum S14]
gi|89050871|gb|EAR56345.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
gi|90439954|gb|EAS65135.1| putative cold shock-like protein CspD [Photobacterium angustum S14]
Length = 73
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFI P+ GE +F H S I EG G +V Y + P + +
Sbjct: 3 TGTVKWFNNAKGFGFICPEDGEDDIFAHYSTIQMEGYRTLKAGQQVNYEVQTGPKGYHAS 62
Query: 118 QAVHVE 123
+ + E
Sbjct: 63 EIILAE 68
>gi|418935694|ref|ZP_13489456.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
gi|375057637|gb|EHS53799.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
Length = 69
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G+ FVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGDADAFVHISAVERAGMREIVEGQKIGFDL 52
>gi|359791148|ref|ZP_09294013.1| cold shock protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359252831|gb|EHK56037.1| cold shock protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 69
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDDGGQDVFVHISAVERAGMRDIAEGQKLGYEMV 53
>gi|300023882|ref|YP_003756493.1| cold-shock DNA-binding domain-containing protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525703|gb|ADJ24172.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 69
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F KG GFI PD G VFVHIS +E
Sbjct: 1 MQTGTVKWFNSQKGFGFIQPDGGGNDVFVHISAVE 35
>gi|94495604|ref|ZP_01302184.1| cold shock protein [Sphingomonas sp. SKA58]
gi|94424992|gb|EAT10013.1| cold shock protein [Sphingomonas sp. SKA58]
Length = 153
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L +G +K F KG GFI D G+P FVHIS +E G GD + + L
Sbjct: 77 QRQLTGERASGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGMAALNEGDRLDFEL 135
>gi|424875680|ref|ZP_18299339.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393163283|gb|EJC63336.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 68
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G VF HIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNATKGSGFIQPDDGSIDVFAHISAVERTGLLGLNDGQKIAYELVK 54
>gi|154253600|ref|YP_001414424.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157550|gb|ABS64767.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 69
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ G +K F KG GFI PD G+ VFVHIS +E G G ++ Y L
Sbjct: 1 MANGTVKWFNSQKGFGFIQPDGGDKDVFVHISAVERAGMSSLNEGQKIGYDL 52
>gi|20803889|emb|CAD31467.1| PROBABLE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium
loti R7A]
Length = 70
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG GFI PD VFVHIS +E G + G ++KY +
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDDDGQDVFVHISAVERAGLSNLVDGQKIKYEI 52
>gi|328545164|ref|YP_004305273.1| cold shock-like transcription regulator protein [Polymorphum
gilvum SL003B-26A1]
gi|326414906|gb|ADZ71969.1| Putative cold shock-like transcription regulator protein
[Polymorphum gilvum SL003B-26A1]
Length = 70
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLP 99
E G IK F +G GFITP++G VFVHIS E +P P
Sbjct: 3 ENGTIKFFNYDRGFGFITPENGGKDVFVHISAFEQAGLPAP 43
>gi|254254112|ref|ZP_04947429.1| Cold shock protein [Burkholderia dolosa AUO158]
gi|124898757|gb|EAY70600.1| Cold shock protein [Burkholderia dolosa AUO158]
Length = 83
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
V+TG +K F +KG GFI+PD+G +F H S+I G
Sbjct: 17 VDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRG 52
>gi|417324921|ref|ZP_12111045.1| Cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353577635|gb|EHC39736.1| Cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
Length = 131
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 55
>gi|300173064|ref|YP_003772230.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
gi|333447907|ref|ZP_08482849.1| cold shock protein [Leuconostoc inhae KCTC 3774]
gi|299887443|emb|CBL91411.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
Length = 74
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K + + +G+G+ITPD G VFVH + I+ G + G++V Y L F+
Sbjct: 1 MKTGIVKIWQKERGYGYITPDDGGEDVFVHFNGIDMIGFKSLIQGEKVNYVLV---QGFK 57
Query: 116 KNQAVHV 122
QA V
Sbjct: 58 NYQAAQV 64
>gi|254504340|ref|ZP_05116491.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222440411|gb|EEE47090.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 70
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
E G IK F +G GFITP++G VFVH++ E G P+ G +V + + +
Sbjct: 3 ENGTIKFFNHDRGFGFITPENGGKDVFVHVTAFEQAGIGTPVEGAKVSF-VAEDDRRGRG 61
Query: 117 NQAVHVEIV 125
QA +E++
Sbjct: 62 KQAAQLELL 70
>gi|408501317|ref|YP_006865236.1| cold-shock DNA-binding domain protein [Bifidobacterium asteroides
PRL2011]
gi|408466141|gb|AFU71670.1| cold-shock DNA-binding domain protein [Bifidobacterium asteroides
PRL2011]
Length = 67
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
G +K F KG+GFI PD G VFVH S I +G GD+V+Y++
Sbjct: 4 GTVKFFSAGKGYGFINPDDGGEDVFVHYSAIQSDGFKTLDEGDKVEYQV 52
>gi|407770367|ref|ZP_11117737.1| cold-shock DNA-binding domain-containing protein [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407286645|gb|EKF12131.1| cold-shock DNA-binding domain-containing protein [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 68
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
TG +K F +KG+GFITPD G FVHI+ ++ G G +V++ L
Sbjct: 3 TGTVKWFNATKGYGFITPDEGGKDAFVHITAVQRAGLQGLDEGQKVQFELI 53
>gi|238024869|ref|YP_002909101.1| Cold shock protein [Burkholderia glumae BGR1]
gi|237879534|gb|ACR31866.1| Cold shock protein [Burkholderia glumae BGR1]
Length = 67
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFI+PD+G+ +F H S+I G
Sbjct: 1 MDTGIVKWFNDSKGFGFISPDNGKDDLFAHFSEIRG 36
>gi|241554075|ref|YP_002979288.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240863381|gb|ACS61043.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 67
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ GD+V + + K K++A
Sbjct: 3 TGTVKFFNDDKGFGFITPENGGQDVFVHVSALQRGGSLREGDKVSFEVGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|163802491|ref|ZP_02196384.1| bifunctional GMP synthase/glutamine amidotransferase protein
[Vibrio sp. AND4]
gi|159173792|gb|EDP58607.1| bifunctional GMP synthase/glutamine amidotransferase protein
[Vibrio sp. AND4]
Length = 70
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYR 106
+SN+A TG +K F SKG GF+T D+G VFVH I EG + G +V +
Sbjct: 1 MSNKA------TGSVKWFNESKGFGFLTQDNGGADVFVHFQAIVSEGFKTLVEGQKVSFS 54
Query: 107 LCPIPPKFEKNQAV 120
+ P + V
Sbjct: 55 VEQGPKGLQAANVV 68
>gi|298291124|ref|YP_003693063.1| cold-shock DNA-binding domain-containing protein [Starkeya novella
DSM 506]
gi|296927635|gb|ADH88444.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 71
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
+TG +K F KG+GFI PD VFVHIS ++ G G++V + L + K
Sbjct: 4 QTGTVKWFNDQKGYGFIQPDGAGKDVFVHISAVQRSGLQGLRDGEKVSFEL-QTDQRSGK 62
Query: 117 NQAVHVEI 124
AV++ +
Sbjct: 63 TSAVNLRV 70
>gi|365166759|ref|ZP_09360566.1| hypothetical protein HMPREF1006_02199 [Synergistes sp. 3_1_syn1]
gi|363619443|gb|EHL70759.1| hypothetical protein HMPREF1006_02199 [Synergistes sp. 3_1_syn1]
Length = 70
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F KG GFI+ D+G VFVH S I EG G +V + + P P +
Sbjct: 1 MNSGTVKWFNPEKGFGFISNDNGGEDVFVHFSAIAAEGFKSLNEGQKVTFEVEPDPKNSK 60
Query: 116 KNQAVHVEI 124
+ +AV+V++
Sbjct: 61 RMRAVNVKV 69
>gi|421746105|ref|ZP_16183923.1| cold-shock DNA-binding protein family [Cupriavidus necator
HPC(L)]
gi|409775375|gb|EKN56870.1| cold-shock DNA-binding protein family [Cupriavidus necator
HPC(L)]
Length = 67
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+I+G
Sbjct: 1 MATGTVKWFNETKGFGFITPDDGGADLFAHFSEIQGT 37
>gi|384411761|ref|YP_005621126.1| cold-shock protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335932135|gb|AEH62675.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 290
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 32 TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
T S P+P + R L +G +K F KG GFI D G+P FVHIS +
Sbjct: 195 TESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQRDDGQPDAFVHISAV 254
Query: 92 EGCYVPL--PGDEVKYRL 107
E +P GD + + L
Sbjct: 255 ERAGLPSLNEGDRLSFEL 272
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GF+ D G VFVHIS +E
Sbjct: 124 TGVVKFFNSQKGFGFVVRDDGGEDVFVHISAVE 156
>gi|330819166|ref|YP_004348028.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
BSR3]
gi|327371161|gb|AEA62516.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
BSR3]
Length = 67
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S++ G
Sbjct: 1 MDTGIVKWFNDSKGFGFITPDNGGDDLFAHFSEVSG 36
>gi|312796301|ref|YP_004029223.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312168076|emb|CBW75079.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 72
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F SKG GFITPD+G +F H S++ G
Sbjct: 6 MDTGIVKWFNDSKGFGFITPDAGGEDLFAHFSEVTG 41
>gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 303
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 32 TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
T S P+P + R L +G +K F KG GFI D G+P FVHIS +
Sbjct: 208 TESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQRDDGQPDAFVHISAV 267
Query: 92 EGCYVPL--PGDEVKYRL 107
E +P GD + + L
Sbjct: 268 ERAGLPSLNEGDRLSFEL 285
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GF+ D G VFVHIS +E
Sbjct: 137 TGVVKFFNSQKGFGFVVRDDGGEDVFVHISAVE 169
>gi|386744398|ref|YP_006217577.1| cold shock protein CspE [Providencia stuartii MRSN 2154]
gi|384481091|gb|AFH94886.1| cold shock protein CspE [Providencia stuartii MRSN 2154]
Length = 69
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I EG G +V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIASEGFKTLAEGQKVEFEIT 55
>gi|221052274|ref|XP_002257713.1| cold-shock protein [Plasmodium knowlesi strain H]
gi|193807544|emb|CAQ38049.1| cold-shock protein, putative [Plasmodium knowlesi strain H]
Length = 144
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
TG + +F R KG+GFI P+ G P +FVH +DI
Sbjct: 33 TGTVIKFDRRKGYGFIKPNDGGPDIFVHYTDI 64
>gi|187477994|ref|YP_786018.1| cold shock-like protein [Bordetella avium 197N]
gi|115422580|emb|CAJ49105.1| cold shock-like protein [Bordetella avium 197N]
Length = 67
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ETG +K F KG+GFITP+SG +F H S+I+
Sbjct: 1 METGVVKWFNAEKGYGFITPESGGKDLFAHFSEIQ 35
>gi|421590067|ref|ZP_16035123.1| cold shock protein [Rhizobium sp. Pop5]
gi|403704850|gb|EJZ20613.1| cold shock protein [Rhizobium sp. Pop5]
Length = 69
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ +G +K F +KG GFI PD G VFVHIS +E G G +++Y + +
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDDGSTDVFVHISAVERAGMRDLAEGQKIRYDIVR-DKRSG 59
Query: 116 KNQAVHVE 123
KN A +++
Sbjct: 60 KNSADNLQ 67
>gi|379057753|ref|ZP_09848279.1| cold-shock DNA-binding domain-containing protein [Serinicoccus
profundi MCCC 1A05965]
Length = 314
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI-EGCYVPLPGDEVKYRLCPIPPKFEKN-Q 118
G + F KG GFITP+SG P VFVH+ + +G V GD V Y + + E+ Q
Sbjct: 158 GTVSWFDEDKGFGFITPESGGPDVFVHVRALADGLPVLDEGDRVTYDVV----EGERGPQ 213
Query: 119 AVHVEIVH 126
A V +VH
Sbjct: 214 ARDVRLVH 221
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 70 KGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
+G GFITPD+G +FVH+S + GD V+Y++
Sbjct: 262 RGFGFITPDAGGADLFVHVSVLRNEDELYAGDRVRYQV 299
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 50 SNRALQNPVET-GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
++R+ P+ G + + KG+GFITPD G +F+H S I G V G V +
Sbjct: 69 ADRSADAPLGVLGTVSWYEPGKGYGFITPDGGGDEIFLHSSAIVGDGVVSEGQRVAF 125
>gi|329114551|ref|ZP_08243310.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
gi|326696031|gb|EGE47713.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
Length = 82
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
TG +K F +KG+GFI PD G VFVHI+ ++
Sbjct: 18 TGTVKWFNATKGYGFIAPDDGGKDVFVHITAVQAA 52
>gi|16127133|ref|NP_421697.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
gi|221235933|ref|YP_002518370.1| cold shock protein [Caulobacter crescentus NA1000]
gi|13424521|gb|AAK24865.1| cold-shock domain family protein [Caulobacter crescentus CB15]
gi|220965106|gb|ACL96462.1| cold shock protein [Caulobacter crescentus NA1000]
Length = 69
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD+G +FVHIS +E
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDNGGADIFVHISAVE 35
>gi|407781876|ref|ZP_11129092.1| Cold shock protein, DNA binding [Oceanibaculum indicum P24]
gi|407206915|gb|EKE76859.1| Cold shock protein, DNA binding [Oceanibaculum indicum P24]
Length = 69
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG+GFI P++G P VFVHIS +E
Sbjct: 4 GTVKWFNSTKGYGFIQPENGGPDVFVHISAVE 35
>gi|392414666|ref|YP_006451271.1| cold shock protein [Mycobacterium chubuense NBB4]
gi|390614442|gb|AFM15592.1| cold shock protein [Mycobacterium chubuense NBB4]
Length = 67
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFITPD G+ VFVH S+I G +R E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFITPDGGDSDVFVHYSEISGS---------GFR------SLEENQRV 48
Query: 121 HVEIVHLT 128
EI T
Sbjct: 49 EFEIEQGT 56
>gi|134282646|ref|ZP_01769350.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|254204405|ref|ZP_04910758.1| cold-shock domain family protein [Burkholderia mallei JHU]
gi|134246203|gb|EBA46293.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|147753991|gb|EDK61055.1| cold-shock domain family protein [Burkholderia mallei JHU]
Length = 83
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
++TG +K F +KG GFITPDSG +F H S+I
Sbjct: 17 MDTGTVKWFNETKGFGFITPDSGGDDLFAHFSEI 50
>gi|120402055|ref|YP_951884.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119954873|gb|ABM11878.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
PYR-1]
Length = 67
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI PD G P VFVH S+I G YR E+NQ V
Sbjct: 4 GTVKWFNGDKGFGFIAPDGGAPDVFVHYSEISGN---------GYR------SLEENQRV 48
Query: 121 HVEI 124
E+
Sbjct: 49 EFEV 52
>gi|403508312|ref|YP_006639950.1| 'Cold-shock' DNA-binding domain protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402803013|gb|AFR10423.1| 'Cold-shock' DNA-binding domain protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 67
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI+PD G P FVH S I+G +R E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFISPDDGGPDAFVHYSAIQGT---------GFR------NLEENQRV 48
Query: 121 HVEIVHLT 128
EIV T
Sbjct: 49 EFEIVAGT 56
>gi|392381306|ref|YP_005030503.1| cold shock protein, DNA binding [Azospirillum brasilense Sp245]
gi|356876271|emb|CCC97034.1| cold shock protein, DNA binding [Azospirillum brasilense Sp245]
Length = 69
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
G +K F +KG+GFI PD+G VFVHIS +E G G +V Y
Sbjct: 4 GTVKWFNSTKGYGFIQPDNGGADVFVHISAVERAGLRSLNEGQKVSY 50
>gi|416905772|ref|ZP_11930850.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. TJI49]
gi|325529192|gb|EGD06159.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. TJI49]
Length = 67
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F +KG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDTKGFGFITPDKGGDDLFAHFSEIRG 36
>gi|254502104|ref|ZP_05114255.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222438175|gb|EEE44854.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 69
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F +KG+GFI P+ G VFVHIS +E G GD+V + +
Sbjct: 4 GTVKFFNSTKGYGFIQPEDGSNDVFVHISAVERAGLATLNEGDKVSFEVV 53
>gi|221639814|ref|YP_002526076.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|221160595|gb|ACM01575.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
Length = 83
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 18 TGTVKWFNSTKGFGFIAPDDGGKDVFVHISAVE 50
>gi|13475232|ref|NP_106796.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14025983|dbj|BAB52582.1| cold shock protein [Mesorhizobium loti MAFF303099]
Length = 70
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG GFI PD+G VFVHIS +E G G ++ Y +
Sbjct: 4 GTVKWFNSTKGFGFIQPDNGGQDVFVHISAVERAGLSTLTDGQKINYEV 52
>gi|224826638|ref|ZP_03699739.1| cold-shock DNA-binding domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|347539002|ref|YP_004846427.1| cold-shock DNA-binding domain containing protein
[Pseudogulbenkiania sp. NH8B]
gi|224601239|gb|EEG07421.1| cold-shock DNA-binding domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|345642180|dbj|BAK76013.1| cold-shock DNA-binding domain protein [Pseudogulbenkiania sp. NH8B]
Length = 67
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYR 106
+ETG +K F +KG GFI+PD+G +F H S+I +G G +V Y+
Sbjct: 1 METGTVKWFNDAKGFGFISPDAGGEDLFAHFSEIRADGFKSLQEGQKVSYQ 51
>gi|397676826|ref|YP_006518364.1| cold-shock protein [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397515|gb|AFN56842.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 278
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 32 TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
T S P+P + R L +G +K F KG GFI D G+P FVHIS +
Sbjct: 183 TESAPAPRGGEFGGSRGGPQRQLTGEKSSGTVKFFNAMKGFGFIQRDDGQPDAFVHISAV 242
Query: 92 EGCYVPL--PGDEVKYRL 107
E +P GD + + L
Sbjct: 243 ERAGLPSLNEGDRLSFEL 260
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFI D G VFVHIS +E
Sbjct: 112 TGVVKFFNSQKGFGFIVRDDGGEDVFVHISAVE 144
>gi|254429153|ref|ZP_05042860.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
gi|196195322|gb|EDX90281.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
Length = 84
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKF 114
TG++K F +KG+GF+ PD G +FVH S I +G G V+Y + P F
Sbjct: 3 TGRVKWFNNAKGYGFVRPDEGGEDLFVHYSYIQMDGYKSLKAGQPVEYEVQPANKGF 59
>gi|114764472|ref|ZP_01443697.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
gi|114543039|gb|EAU46058.1| cold shock family protein [Roseovarius sp. HTCC2601]
Length = 68
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI P+ G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPEGGSKDVFVHISALE 35
>gi|152987217|ref|YP_001349896.1| cold-shock protein [Pseudomonas aeruginosa PA7]
gi|452879685|ref|ZP_21956762.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
aeruginosa VRFPA01]
gi|150962375|gb|ABR84400.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
gi|452183788|gb|EME10806.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
aeruginosa VRFPA01]
Length = 203
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
ETG +K F SKG GFI+ DSGE +FVH I EG + + G V++ +
Sbjct: 137 ETGTVKWFNTSKGFGFISRDSGED-IFVHFRAIRGEGHRILIEGQRVEFSVV 187
>gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7]
gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7]
Length = 80
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFITPD+G +F H S I+ G G +V + + P +
Sbjct: 16 TGTVKWFNDAKGFGFITPDNGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIAQGP---KGK 72
Query: 118 QAVHV 122
QA+++
Sbjct: 73 QALNI 77
>gi|330446455|ref|ZP_08310107.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490646|dbj|GAA04604.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 73
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI P+ GE +F H S I EG G +V Y + P +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEDGEGDIFAHYSTIQMEGYRTLKAGQQVNYEVQAGPKGYH 60
Query: 116 KNQAV 120
++ V
Sbjct: 61 ASEIV 65
>gi|75674509|ref|YP_316930.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|85713497|ref|ZP_01044487.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|338973031|ref|ZP_08628401.1| cold shock protein CspA [Bradyrhizobiaceae bacterium SG-6C]
gi|74419379|gb|ABA03578.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
gi|85699401|gb|EAQ37268.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|338233784|gb|EGP08904.1| cold shock protein CspA [Bradyrhizobiaceae bacterium SG-6C]
Length = 68
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG+GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 2 GTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVA 52
>gi|77463958|ref|YP_353462.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|126462801|ref|YP_001043915.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|146276900|ref|YP_001167059.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|332558830|ref|ZP_08413152.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
gi|429209223|ref|ZP_19200461.1| Cold shock protein CspA [Rhodobacter sp. AKP1]
gi|77388376|gb|ABA79561.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
gi|126104465|gb|ABN77143.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17029]
gi|145555141|gb|ABP69754.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17025]
gi|332276542|gb|EGJ21857.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
gi|428187688|gb|EKX56262.1| Cold shock protein CspA [Rhodobacter sp. AKP1]
Length = 68
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNSTKGFGFIAPDDGGKDVFVHISAVE 35
>gi|399020151|ref|ZP_10722291.1| cold shock protein [Herbaspirillum sp. CF444]
gi|398096161|gb|EJL86490.1| cold shock protein [Herbaspirillum sp. CF444]
Length = 70
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+TG +K F SKG GFITPD G +F H DI+
Sbjct: 5 QTGTVKWFNDSKGFGFITPDQGGDDLFAHFQDIQ 38
>gi|260769345|ref|ZP_05878278.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
gi|375132702|ref|YP_005049110.1| cold-shock protein [Vibrio furnissii NCTC 11218]
gi|260614683|gb|EEX39869.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
gi|315181877|gb|ADT88790.1| cold-shock DNA-binding domain protein [Vibrio furnissii NCTC 11218]
Length = 70
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYR 106
+SN+A TG +K F +KG GFITPD+G +FVH I EG G +V +
Sbjct: 1 MSNQA------TGTVKWFNETKGFGFITPDNGGADLFVHFRSIASEGFKTLAEGQKVSFN 54
Query: 107 L 107
+
Sbjct: 55 V 55
>gi|126735271|ref|ZP_01751017.1| cold shock family protein [Roseobacter sp. CCS2]
gi|126715826|gb|EBA12691.1| cold shock family protein [Roseobacter sp. CCS2]
Length = 69
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F +KG+GFI PD G +FVHIS +E + D+ K I + + A
Sbjct: 4 GTVKWFNTTKGYGFIAPDDGGADIFVHISAVEQSGLTGLADDQKVTFDLIEGRDGRQMAG 63
Query: 121 HVEIV 125
++ V
Sbjct: 64 NIAKV 68
>gi|186477475|ref|YP_001858945.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184193934|gb|ACC71899.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
+ETG +K F +KG GFITPD+G +F H S+I EG +V Y + P
Sbjct: 1 METGTVKWFNDAKGFGFITPDAGGEDLFAHFSEIRVEGFKTLQENQKVTYDVKTGP 56
>gi|372278485|ref|ZP_09514521.1| cold shock protein CspA [Oceanicola sp. S124]
Length = 68
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI P+ G VFVHIS +E
Sbjct: 1 MATGTVKWFNTTKGYGFIAPEGGSKDVFVHISAVE 35
>gi|386829544|ref|ZP_10116651.1| cold shock protein [Beggiatoa alba B18LD]
gi|386430428|gb|EIJ44256.1| cold shock protein [Beggiatoa alba B18LD]
Length = 67
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F SKG GF+ PD G VFVH S I+
Sbjct: 1 MQTGTVKWFNESKGFGFLAPDDGSKDVFVHFSTIQ 35
>gi|302523728|ref|ZP_07276070.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302432623|gb|EFL04439.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length = 67
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFITPD+G VFVH S+I+G
Sbjct: 4 GTVKWFNSEKGFGFITPDNGGGDVFVHYSEIQG 36
>gi|15616931|ref|NP_240144.1| cold shock-like protein CspC [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681685|ref|YP_002468071.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682240|ref|YP_002468624.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471376|ref|ZP_05635375.1| cold shock-like protein CspC [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226126|ref|YP_005617289.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384226640|ref|YP_005618391.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|384227183|ref|YP_005618933.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|414562680|ref|YP_005617871.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11131708|sp|P57407.2|CSPC_BUCAI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|25296148|pir||F84967 cold shock-like protein cspC [imported] - Buchnera sp. (strain
APS)
gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621973|gb|ACL30129.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624528|gb|ACL30683.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086059|gb|ADP66141.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086633|gb|ADP66714.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087216|gb|ADP67296.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087737|gb|ADP67816.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 69
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPSDGSKDVFVHFSSIQG 38
>gi|409402842|ref|ZP_11252311.1| cold-shock DNA-binding protein family protein [Acidocella sp.
MX-AZ02]
gi|409128641|gb|EKM98534.1| cold-shock DNA-binding protein family protein [Acidocella sp.
MX-AZ02]
Length = 69
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG GFI PD+G VFVHIS +E G V G ++ + +
Sbjct: 4 GTVKFFNTAKGFGFIKPDNGSDDVFVHISAVERAGMRVITEGQKLSFEIVT 54
>gi|161520712|ref|YP_001584139.1| cold-shock DNA-binding domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189353104|ref|YP_001948731.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221196347|ref|ZP_03569394.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2M]
gi|221203021|ref|ZP_03576040.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2]
gi|221209974|ref|ZP_03582955.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD1]
gi|421467562|ref|ZP_15916172.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC BAA-247]
gi|421476148|ref|ZP_15924060.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
CF2]
gi|160344762|gb|ABX17847.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC 17616]
gi|189337126|dbj|BAG46195.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221170662|gb|EEE03128.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD1]
gi|221176955|gb|EEE09383.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2]
gi|221182901|gb|EEE15301.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2M]
gi|400228935|gb|EJO58822.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
CF2]
gi|400233570|gb|EJO63104.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC BAA-247]
Length = 67
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
++TG +K F +KG GFI+PD+G +F H S+I G
Sbjct: 1 MDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRGT 37
>gi|244539314|dbj|BAH83357.1| cold shock protein E [Candidatus Ishikawaella capsulata Mpkobe]
Length = 72
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F SKG GFITP+ G VFVH S I+G
Sbjct: 8 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQG 40
>gi|253995969|ref|YP_003048033.1| cold-shock DNA-binding domain-containing protein [Methylotenera
mobilis JLW8]
gi|253982648|gb|ACT47506.1| cold-shock DNA-binding domain protein [Methylotenera mobilis JLW8]
Length = 67
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI-EGCYVPLP-GDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S I E Y L G V + L P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGDDLFAHFSAIVESGYKSLKEGQRVSFDLTEGP 56
>gi|46202348|ref|ZP_00053353.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 91
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG+GFI PD+G VFVHIS +E
Sbjct: 26 GSVKWFNSTKGYGFIAPDNGGADVFVHISAVE 57
>gi|399019585|ref|ZP_10721731.1| cold shock protein [Herbaspirillum sp. CF444]
gi|398097476|gb|EJL87780.1| cold shock protein [Herbaspirillum sp. CF444]
Length = 69
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S I+ G G +V++ + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGP 56
>gi|405382805|ref|ZP_11036582.1| cold shock protein [Rhizobium sp. CF142]
gi|397320733|gb|EJJ25164.1| cold shock protein [Rhizobium sp. CF142]
Length = 67
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFITP++G VFVH+S ++ GD+V + + K K++A
Sbjct: 3 TGTVKFFNDDKGFGFITPENGGQDVFVHVSALQRGGSLREGDKVSFEVGQ-DRKTGKSKA 61
Query: 120 VHVEIV 125
+V ++
Sbjct: 62 ENVSVL 67
>gi|452125573|ref|ZP_21938157.1| cold shock-like protein [Bordetella holmesii F627]
gi|451924803|gb|EMD74944.1| cold shock-like protein [Bordetella holmesii F627]
Length = 67
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ETG +K F KG+GFITP+SG +F H S+I+
Sbjct: 1 METGVVKWFNAEKGYGFITPESGGKDLFAHFSEIQ 35
>gi|440231501|ref|YP_007345294.1| cold shock protein [Serratia marcescens FGI94]
gi|440053206|gb|AGB83109.1| cold shock protein [Serratia marcescens FGI94]
Length = 70
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLP-GDEVKYRL 107
G++K F SKG GFITP G VFVH S I+G + L G +V++ +
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQDVQFSI 55
>gi|386744891|ref|YP_006218070.1| cold shock transcription antiterminator [Providencia stuartii MRSN
2154]
gi|422014784|ref|ZP_16361393.1| cold shock transcription antiterminator [Providencia
burhodogranariea DSM 19968]
gi|422022378|ref|ZP_16368886.1| cold shock transcription antiterminator [Providencia sneebia DSM
19967]
gi|384481584|gb|AFH95379.1| cold shock transcription antiterminator [Providencia stuartii MRSN
2154]
gi|414096871|gb|EKT58527.1| cold shock transcription antiterminator [Providencia sneebia DSM
19967]
gi|414100664|gb|EKT62279.1| cold shock transcription antiterminator [Providencia
burhodogranariea DSM 19968]
Length = 70
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKYRL 107
G++K F SKG GFITP G VFVH S I+G + L G +V++ +
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAGFKTLAEGQQVEFTI 55
>gi|389872592|ref|YP_006380011.1| cold-shock protein [Advenella kashmirensis WT001]
gi|388537841|gb|AFK63029.1| cold-shock protein [Advenella kashmirensis WT001]
Length = 82
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
+TG +K F +KG GFITPD G +F H S I+ G G V + + P +
Sbjct: 17 QTGTVKWFNDAKGFGFITPDGGGEDLFAHFSSIQMNGFKTLKEGQRVTFEIAQGP---KG 73
Query: 117 NQAVHV 122
QA+++
Sbjct: 74 QQALNI 79
>gi|339328566|ref|YP_004688258.1| cold-shock DNA-binding protein family [Cupriavidus necator N-1]
gi|338171167|gb|AEI82220.1| cold-shock DNA-binding protein family [Cupriavidus necator N-1]
Length = 67
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ TG +K F +KG GFITPD G +F H S+++G
Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGSDDLFAHFSEVQG 36
>gi|83950568|ref|ZP_00959301.1| cold shock family protein [Roseovarius nubinhibens ISM]
gi|83838467|gb|EAP77763.1| cold shock family protein [Roseovarius nubinhibens ISM]
Length = 68
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG+GFI PD G VFVHIS +E
Sbjct: 4 GTVKWFNTTKGYGFIAPDDGGKDVFVHISAVE 35
>gi|418536328|ref|ZP_13102024.1| hypothetical protein BP1026A_3134 [Burkholderia pseudomallei 1026a]
gi|385352814|gb|EIF59203.1| hypothetical protein BP1026A_3134 [Burkholderia pseudomallei 1026a]
Length = 235
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F +KG GFITPDSG +F H S+I
Sbjct: 169 MDTGTVKWFNETKGFGFITPDSGGDDLFAHFSEIR 203
>gi|339505035|ref|YP_004692455.1| cold shock protein CspA [Roseobacter litoralis Och 149]
gi|338759028|gb|AEI95492.1| cold shock protein CspA [Roseobacter litoralis Och 149]
Length = 68
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ +G +K F +KG+GFI PD+G +FVHIS +E
Sbjct: 1 MASGTVKWFNTTKGYGFIAPDNGGKDIFVHISAVE 35
>gi|451823005|ref|YP_007459279.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775805|gb|AGF46846.1| CspA family beta-ribbon cold shock protein [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 81
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 48 SISNRALQNPVE---TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDE 102
S +N N + TG +K F +KG GFITPD+G +F H S I +G G +
Sbjct: 2 SSTNETFSNDYKVKLTGTVKWFNDAKGFGFITPDNGGEEIFAHFSSIQMDGFRTLKEGQK 61
Query: 103 VKYRLCPIPPKFEKNQAVHV 122
V + + P + QA+++
Sbjct: 62 VSFEVIQGP---KGKQALNI 78
>gi|410086796|ref|ZP_11283503.1| hypothetical protein C790_0897 [Morganella morganii SC01]
gi|455738904|ref|YP_007505170.1| hypothetical protein MU9_1751 [Morganella morganii subsp. morganii
KT]
gi|409766630|gb|EKN50720.1| hypothetical protein C790_0897 [Morganella morganii SC01]
gi|455420467|gb|AGG30797.1| hypothetical protein MU9_1751 [Morganella morganii subsp. morganii
KT]
Length = 70
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGD 101
G++K F SKG GFITP G VFVH S I+G G+
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGAGFKTLGE 47
>gi|386829543|ref|ZP_10116650.1| cold shock protein [Beggiatoa alba B18LD]
gi|386829545|ref|ZP_10116652.1| cold shock protein [Beggiatoa alba B18LD]
gi|386430427|gb|EIJ44255.1| cold shock protein [Beggiatoa alba B18LD]
gi|386430429|gb|EIJ44257.1| cold shock protein [Beggiatoa alba B18LD]
Length = 67
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F SKG GF+ PD+G VFVH S I+
Sbjct: 1 MQTGTVKWFNESKGFGFLAPDNGGKDVFVHFSTIQ 35
>gi|418396490|ref|ZP_12970315.1| hypothetical protein BP354A_4680 [Burkholderia pseudomallei 354a]
gi|418556164|ref|ZP_13120817.1| hypothetical protein BP354E_3890 [Burkholderia pseudomallei 354e]
gi|385367418|gb|EIF72957.1| hypothetical protein BP354E_3890 [Burkholderia pseudomallei 354e]
gi|385371357|gb|EIF76543.1| hypothetical protein BP354A_4680 [Burkholderia pseudomallei 354a]
Length = 235
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F +KG GFITPDSG +F H S+I
Sbjct: 169 MDTGTVKWFNETKGFGFITPDSGGDDLFAHFSEIR 203
>gi|190014803|ref|YP_001967567.1| orf_Bo170 [Agrobacterium tumefaciens]
gi|71849606|gb|AAZ50554.1| orf_Bo170 [Agrobacterium tumefaciens]
Length = 100
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKY 105
TGK+K F +K GFITPD G P VF+H+S I C PG + Y
Sbjct: 3 TGKVKWFDAAKRFGFITPDDGGPDVFLHLSSIADPACPTLQPGLRLHY 50
>gi|384227757|ref|YP_005619502.1| cold shock-like protein CspC [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538697|gb|AEO08674.1| cold shock-like protein CspC [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 69
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPSDGSKDVFVHFSSIQG 38
>gi|389875561|ref|YP_006373296.1| pyridoxal phosphate biosynthetic protein PdxJ [Tistrella mobilis
KA081020-065]
gi|388530516|gb|AFK55712.1| pyridoxal phosphate biosynthetic protein PdxJ [Tistrella mobilis
KA081020-065]
Length = 70
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G FVHIS ++ G G +V Y L
Sbjct: 1 MATGTVKWFNATKGFGFIQPDEGGADAFVHISAVQRSGLTELREGQKVSYELIA 54
>gi|319786851|ref|YP_004146326.1| cold-shock DNA-binding domain-containing protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465363|gb|ADV27095.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 198
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPLPGDEVKY 105
GKI E+ +G GFI + G VFVH+ D EG P+ GD V Y
Sbjct: 4 AGKIIEWNDERGFGFIAQNGGSQRVFVHVRDFEGRARRPVVGDPVTY 50
>gi|298292870|ref|YP_003694809.1| cold-shock DNA-binding domain-containing protein [Starkeya
novella DSM 506]
gi|296929381|gb|ADH90190.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 69
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ G +K F KG GFI PD+G P VFVHIS +E
Sbjct: 1 MAAGTVKWFNGQKGFGFIQPDNGGPDVFVHISAVE 35
>gi|167583194|ref|ZP_02376068.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
TXDOH]
Length = 67
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F +KG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDGGGDDLFAHFSEIRG 36
>gi|429211507|ref|ZP_19202672.1| putative cold-shock protein [Pseudomonas sp. M1]
gi|428155989|gb|EKX02537.1| putative cold-shock protein [Pseudomonas sp. M1]
Length = 70
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 7/45 (15%)
Query: 49 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+SNR + G +K F +KG+GFITP+SG P VFVH IEG
Sbjct: 1 MSNR------QNGTVKWFNETKGYGFITPESG-PDVFVHFRAIEG 38
>gi|91199641|emb|CAI77996.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|96771688|emb|CAI78270.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|114049906|emb|CAK50923.1| putative cold shock protein [Streptomyces ambofaciens]
gi|114050128|emb|CAK51161.1| putative cold shock protein [Streptomyces ambofaciens]
gi|117164235|emb|CAJ87776.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|126347347|emb|CAJ89054.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
Length = 67
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI+PD G P VFVH S I+G +R E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFISPDEGGPDVFVHFSAIQGS---------GFR------NLEENQRV 48
Query: 121 HVEIVH 126
EI
Sbjct: 49 EFEITQ 54
>gi|409356559|ref|ZP_11234946.1| cold-shock DNA-binding domain-containing protein [Dietzia
alimentaria 72]
Length = 67
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F KG GFI PD G VF H S I+G YR E+N
Sbjct: 1 MATGTVKWFNADKGFGFIAPDDGSADVFAHFSAIQGS---------GYR------SLEEN 45
Query: 118 QAVHVEIVH 126
Q V ++
Sbjct: 46 QQVSFDVAQ 54
>gi|183984791|ref|YP_001853082.1| cold shock protein a, CspA [Mycobacterium marinum M]
gi|443492885|ref|YP_007371032.1| cold shock protein a, CspA [Mycobacterium liflandii 128FXT]
gi|183178117|gb|ACC43227.1| cold shock protein a, CspA [Mycobacterium marinum M]
gi|442585382|gb|AGC64525.1| cold shock protein a, CspA [Mycobacterium liflandii 128FXT]
Length = 67
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFITPD G +FVH S+I+G YR E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGS---------GYR------SLEENQRV 48
Query: 121 HVEIVHLT 128
E+ T
Sbjct: 49 QFEVEQGT 56
>gi|452751999|ref|ZP_21951743.1| Cold shock protein CspA [alpha proteobacterium JLT2015]
gi|451960519|gb|EMD82931.1| Cold shock protein CspA [alpha proteobacterium JLT2015]
Length = 78
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPI 110
G +K F R KG GFI PD G VFVHIS ++ G GD V++ L +
Sbjct: 4 GNVKWFDRKKGFGFIKPDLGAVDVFVHISALKASGLNEVGEGDRVEFELTQL 55
>gi|430004242|emb|CCF20033.1| putative cold shock protein y4cH [Rhizobium sp.]
Length = 71
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
ETG +K F KG GFI PD+G +FVHIS ++ + + K P + K
Sbjct: 2 AETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGKG 61
Query: 118 -QAVHVEI 124
+AV+++I
Sbjct: 62 PKAVNLQI 69
>gi|333398699|ref|ZP_08480512.1| cold shock protein [Leuconostoc gelidum KCTC 3527]
gi|406599723|ref|YP_006745069.1| cold shock protein [Leuconostoc gelidum JB7]
gi|406371258|gb|AFS40183.1| cold shock protein [Leuconostoc gelidum JB7]
Length = 74
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
++TG +K + + +G+G+ITPD G VFVH + I+ G + G++V Y L F+
Sbjct: 1 MKTGIVKIWQKERGYGYITPDDGGEDVFVHFNGIDMVGFKSLIQGEKVNYVLV---QGFK 57
Query: 116 KNQAVHV 122
QA V
Sbjct: 58 NYQAAEV 64
>gi|319949463|ref|ZP_08023522.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
gi|319436867|gb|EFV91928.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
Length = 67
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ TG +K F KG GFI PD G VF H S I+G YR E+N
Sbjct: 1 MATGTVKWFNADKGFGFIAPDDGSADVFAHFSAIQGS---------GYR------SLEEN 45
Query: 118 QAVHVEIVH 126
Q V ++
Sbjct: 46 QQVSFDVAQ 54
>gi|312795894|ref|YP_004028816.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312167669|emb|CBW74672.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
+ETG +K F +KG GFITPD G +F H S+I
Sbjct: 1 METGTVKWFNDAKGFGFITPDGGGEDLFAHFSEI 34
>gi|291326366|ref|ZP_06124240.2| conserved domain protein [Providencia rettgeri DSM 1131]
gi|291314630|gb|EFE55083.1| conserved domain protein [Providencia rettgeri DSM 1131]
Length = 77
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 14 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 46
>gi|154252646|ref|YP_001413470.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154156596|gb|ABS63813.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPK 113
TG +K F KG+GFI P G VFVHIS +E G G ++ Y L K
Sbjct: 3 TGVVKWFNTQKGYGFIQPSDGGRDVFVHISAVERAGMSTLNEGQKINYELVTEKGK 58
>gi|390576764|ref|ZP_10256814.1| cold-shock DNA-binding domain-containing protein [Burkholderia
terrae BS001]
gi|420247035|ref|ZP_14750454.1| cold shock protein [Burkholderia sp. BT03]
gi|389931342|gb|EIM93420.1| cold-shock DNA-binding domain-containing protein [Burkholderia
terrae BS001]
gi|398072471|gb|EJL63685.1| cold shock protein [Burkholderia sp. BT03]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
+ETG +K F +KG GFITPD+G +F H S+I
Sbjct: 1 METGTVKWFNDAKGFGFITPDAGGEDLFAHFSEI 34
>gi|390451877|ref|ZP_10237440.1| cold-shock DNA-binding domain-containing protein [Nitratireductor
aquibiodomus RA22]
gi|389660404|gb|EIM72090.1| cold-shock DNA-binding domain-containing protein [Nitratireductor
aquibiodomus RA22]
Length = 39
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHIS 89
+TG +K F SKG GFITPD G VFVHIS
Sbjct: 3 QTGTVKFFNASKGFGFITPDDGAKDVFVHIS 33
>gi|300782274|ref|YP_003762565.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|384145481|ref|YP_005528297.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
gi|399534154|ref|YP_006546816.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
gi|299791788|gb|ADJ42163.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|340523635|gb|AEK38840.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
gi|398314924|gb|AFO73871.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFITPD+G VFVH S+I+G
Sbjct: 4 GTVKWFNSEKGFGFITPDNGGGDVFVHYSEIQG 36
>gi|115358650|ref|YP_775788.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|170699551|ref|ZP_02890592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171317033|ref|ZP_02906238.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172063386|ref|YP_001811037.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|115283938|gb|ABI89454.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD]
gi|170135569|gb|EDT03856.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171097817|gb|EDT42639.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171995903|gb|ACB66821.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKYRLCPIPPKFE 115
++TG +K F +KG GFI+PD+G +F H S+I G G +V Y + P +
Sbjct: 1 MDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRGTGFKTLAEGQKVSYEVKRGPKGLQ 60
>gi|15889479|ref|NP_355160.1| cold shock protein [Agrobacterium fabrum str. C58]
gi|325293560|ref|YP_004279424.1| cold shock protein [Agrobacterium sp. H13-3]
gi|335038042|ref|ZP_08531339.1| cold shock protein [Agrobacterium sp. ATCC 31749]
gi|408788096|ref|ZP_11199818.1| cold shock protein [Rhizobium lupini HPC(L)]
gi|417859381|ref|ZP_12504437.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|418297145|ref|ZP_12908987.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|418407186|ref|ZP_12980504.1| cold shock protein [Agrobacterium tumefaciens 5A]
gi|420240411|ref|ZP_14744639.1| cold shock protein [Rhizobium sp. CF080]
gi|424910923|ref|ZP_18334300.1| cold shock protein [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|15157349|gb|AAK87945.1| cold shock protein [Agrobacterium fabrum str. C58]
gi|325061413|gb|ADY65104.1| cold shock protein [Agrobacterium sp. H13-3]
gi|333790546|gb|EGL61946.1| cold shock protein [Agrobacterium sp. ATCC 31749]
gi|338822445|gb|EGP56413.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|355538243|gb|EHH07490.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|358006330|gb|EHJ98654.1| cold shock protein [Agrobacterium tumefaciens 5A]
gi|392846954|gb|EJA99476.1| cold shock protein [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|398076476|gb|EJL67537.1| cold shock protein [Rhizobium sp. CF080]
gi|408486000|gb|EKJ94332.1| cold shock protein [Rhizobium lupini HPC(L)]
Length = 71
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
ETG +K F KG GFI PD+G +FVHIS ++ + + K P + K
Sbjct: 2 AETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGKG 61
Query: 118 -QAVHVEIV 125
+AV+++I
Sbjct: 62 PKAVNLQIA 70
>gi|383788937|ref|YP_005473506.1| cold shock protein [Caldisericum exile AZM16c01]
gi|381364574|dbj|BAL81403.1| cold shock protein [Caldisericum exile AZM16c01]
Length = 70
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEK 116
+TG++K F KG GFI PD+G +FVH S I+ G G +V++ + +
Sbjct: 4 QTGRVKWFNSQKGFGFIVPDNGGKDLFVHFSAIQTSGYKTLKEGQKVEFEIEQTD---KG 60
Query: 117 NQAVHVEIV 125
++AV+V+++
Sbjct: 61 DKAVNVKVI 69
>gi|350546087|ref|ZP_08915512.1| Cold shock protein CspG [Candidatus Burkholderia kirkii UZHbot1]
gi|377821783|ref|YP_004978154.1| cold-shock protein [Burkholderia sp. YI23]
gi|413959597|ref|ZP_11398831.1| cold-shock protein [Burkholderia sp. SJ98]
gi|350526138|emb|CCD41253.1| Cold shock protein CspG [Candidatus Burkholderia kirkii UZHbot1]
gi|357936618|gb|AET90177.1| cold-shock DNA-binding domain protein [Burkholderia sp. YI23]
gi|413940180|gb|EKS72145.1| cold-shock protein [Burkholderia sp. SJ98]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISD--IEGCYVPLPGDEVKYRLCPIP 111
+ETG +K F +KG GFITPD G +F H S+ IEG +V Y + P
Sbjct: 1 METGTVKWFNDAKGFGFITPDGGGEDLFAHFSEIRIEGFKTLQENQKVSYEVKTGP 56
>gi|256374377|ref|YP_003098037.1| cold-shock DNA-binding domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255918680|gb|ACU34191.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TGK+K F KG GFI D G P VFVH + I YR E+NQA
Sbjct: 3 TGKVKWFNAEKGFGFIEQDGGGPDVFVHFTAINAS---------GYR------SLEENQA 47
Query: 120 VHVEIVH 126
V E+
Sbjct: 48 VTFEVTQ 54
>gi|258650835|ref|YP_003199991.1| cold-shock DNA-binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258554060|gb|ACV77002.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
DSM 44233]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPL 98
G +K F KG GFITP+ G P VFVH S+I+ G Y L
Sbjct: 4 GTVKWFNAEKGFGFITPNEGGPDVFVHYSEIQAGGYRSL 42
>gi|118470416|ref|YP_884970.1| hypothetical protein MSMEG_0559 [Mycobacterium smegmatis str. MC2
155]
gi|399984972|ref|YP_006565320.1| Cold shock protein A cspA [Mycobacterium smegmatis str. MC2 155]
gi|441202603|ref|ZP_20971457.1| cold shock protein Csp [Mycobacterium smegmatis MKD8]
gi|118171703|gb|ABK72599.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
gi|399229532|gb|AFP37025.1| Cold shock protein A cspA [Mycobacterium smegmatis str. MC2 155]
gi|440630165|gb|ELQ91939.1| cold shock protein Csp [Mycobacterium smegmatis MKD8]
Length = 67
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI PD G P VFVH S+I G +R E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFIAPDGGAPDVFVHYSEISGS---------GFR------SLEENQRV 48
Query: 121 HVEIVH 126
EI
Sbjct: 49 EFEITQ 54
>gi|453053502|gb|EMF00966.1| DNA binding protein [Streptomyces mobaraensis NBRC 13819 = DSM
40847]
Length = 139
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TGKI F +G+GF+ PD+G VFVH++D++
Sbjct: 3 TGKIIRFDEFRGYGFVAPDTGGEDVFVHVNDVQ 35
>gi|398835925|ref|ZP_10593275.1| cold shock protein [Herbaspirillum sp. YR522]
gi|398214247|gb|EJN00829.1| cold shock protein [Herbaspirillum sp. YR522]
Length = 70
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+TG +K F +KG GFITPD+G +F H DI+
Sbjct: 4 QTGVVKWFNDAKGFGFITPDAGGADLFAHFQDIQ 37
>gi|295688372|ref|YP_003592065.1| cold-shock DNA-binding domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295430275|gb|ADG09447.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
21756]
Length = 69
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD+G +FVHIS +E
Sbjct: 1 MATGTVKWFNSAKGFGFIQPDNGGQDIFVHISAVE 35
>gi|429212449|ref|ZP_19203614.1| cold-shock protein [Pseudomonas sp. M1]
gi|428156931|gb|EKX03479.1| cold-shock protein [Pseudomonas sp. M1]
Length = 198
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
ETG +K F SKG GFI+ D+GE +FVH I EG + + G V++ +
Sbjct: 129 ETGTVKWFNTSKGFGFISRDTGED-IFVHFRAIRGEGHRILIEGQRVEFSVV 179
>gi|300310729|ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum
seropedicae SmR1]
gi|409405191|ref|ZP_11253653.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum
sp. GW103]
gi|415940638|ref|ZP_11555675.1| Cold shock-like protein [Herbaspirillum frisingense GSF30]
gi|300073514|gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae
SmR1]
gi|386433740|gb|EIJ46565.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum
sp. GW103]
gi|407759133|gb|EKF68869.1| Cold shock-like protein [Herbaspirillum frisingense GSF30]
Length = 68
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S I+ G G +V++ + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGP 56
>gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera
radiovictrix DSM 17093]
gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
17093]
Length = 79
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPL-PGDEVKYRL 107
TG++K F KG GFI D G VF H S I G Y L GDEV++ +
Sbjct: 3 TGRVKWFSNEKGFGFIEQDDGGADVFCHFSAITGSGYRSLNEGDEVEFEV 52
>gi|240948086|ref|ZP_04752496.1| cold shock-like protein CspC [Actinobacillus minor NM305]
gi|257465091|ref|ZP_05629462.1| cold shock-like protein CspC [Actinobacillus minor 202]
gi|240297566|gb|EER48058.1| cold shock-like protein CspC [Actinobacillus minor NM305]
gi|257450751|gb|EEV24794.1| cold shock-like protein CspC [Actinobacillus minor 202]
Length = 70
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPL-PGDEVKYRL 107
TG +K F +KG GFI PD G +FVH S IE G Y L G +V++ +
Sbjct: 5 TGTVKWFNATKGFGFIAPDQGGEDIFVHFSAIESNGGYRTLEEGAKVEFEV 55
>gi|116249427|ref|YP_765268.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|241113498|ref|YP_002973333.1| cold-shock DNA-binding domain-containing protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|424876176|ref|ZP_18299835.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
gi|424883757|ref|ZP_18307385.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|115254077|emb|CAK12474.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|240861706|gb|ACS59372.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|392515418|gb|EIW40151.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WU95]
gi|393163779|gb|EJC63832.1| cold shock protein [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 67
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
TG +K F KG GFITP+ G VFVH+S ++ GD+V + +
Sbjct: 3 TGTVKFFNDDKGFGFITPEGGGQDVFVHVSALQSGGSLREGDKVSFEV 50
>gi|134293708|ref|YP_001117444.1| cold-shock DNA-binding protein family protein [Burkholderia
vietnamiensis G4]
gi|387904942|ref|YP_006335280.1| Cold-shock DNA-binding domain protein [Burkholderia sp. KJ006]
gi|134136865|gb|ABO57979.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
G4]
gi|387579834|gb|AFJ88549.1| Cold-shock DNA-binding domain protein [Burkholderia sp. KJ006]
Length = 67
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKYRL 107
++TG +K F +KG GFI+PD+G +F H S+I G G +V Y +
Sbjct: 1 MDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRGTGFKTLAEGQKVSYEV 52
>gi|89053585|ref|YP_509036.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1]
gi|88863134|gb|ABD54011.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
Length = 68
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLPGD-EVKYRL 107
+G +K F +KG GFI PD G VFVHIS +E + LP D ++ Y L
Sbjct: 3 SGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGWSDLPDDTKLTYEL 52
>gi|407695811|ref|YP_006820599.1| Cold shock-like protein CspD [Alcanivorax dieselolei B5]
gi|407253149|gb|AFT70256.1| Cold shock-like protein CspD [Alcanivorax dieselolei B5]
Length = 90
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKF 114
+ TG +K F +KG+GF+ PD G +FVH S I+ G G V+Y L +
Sbjct: 1 MATGTVKWFNNAKGYGFVRPDEGGDDLFVHYSYIQEKGYKTLYTGQSVEYELLEASKGY 59
>gi|241518615|ref|YP_002979243.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|424891998|ref|ZP_18315578.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893772|ref|ZP_18317352.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|240863028|gb|ACS60692.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|393183279|gb|EJC83316.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185053|gb|EJC85090.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 69
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMRELVEGQKIGFEL 52
>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans]
gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein [Janthinobacterium
sp. Marseille]
gi|329905635|ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
gi|340788449|ref|YP_004753914.1| RNA chaperone, transcription antiterminator, affects expression of
rpoS and uspA [Collimonas fungivorans Ter331]
gi|133739526|emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas arsenicoxydans]
gi|151283362|gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp.
Marseille]
gi|327547557|gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
gi|340553716|gb|AEK63091.1| RNA chaperone, transcription antiterminator, affects expression of
rpoS and uspA [Collimonas fungivorans Ter331]
Length = 67
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S I+ G G +V++ + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGP 56
>gi|72160788|ref|YP_288445.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
YX]
gi|71914520|gb|AAZ54422.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
Length = 67
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI D G P VFVH S I G +R E+NQAV
Sbjct: 4 GTVKWFNSEKGFGFIAVDGGGPDVFVHYSAIAGT---------GFR------NLEENQAV 48
Query: 121 HVEIV 125
EIV
Sbjct: 49 EFEIV 53
>gi|381341592|dbj|BAL73145.1| putative cold shock-like transcription regulator protein [Ensifer
adhaerens]
Length = 70
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN-QA 119
G +K F + KG GFITPD G VFVHIS ++ + D + P + K +A
Sbjct: 5 GIVKFFNQDKGFGFITPDGGAKDVFVHISAVQAAGLATLKDGQQVTFDTEPDRMGKGPKA 64
Query: 120 VHVE 123
V+++
Sbjct: 65 VNIQ 68
>gi|378551330|ref|ZP_09826546.1| hypothetical protein CCH26_14624 [Citricoccus sp. CH26A]
Length = 67
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
TG +K F KG+GFI+PD +FVH S IEG
Sbjct: 3 TGTVKWFNAEKGYGFISPDDNSADIFVHFSAIEGS 37
>gi|418297344|ref|ZP_12909185.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|418300440|ref|ZP_12912264.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|355533605|gb|EHH02932.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
gi|355537530|gb|EHH06785.1| cold shock protein [Agrobacterium tumefaciens CCNWGS0286]
Length = 69
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMRELVEGQKIGFEL 52
>gi|386829540|ref|ZP_10116647.1| cold shock protein [Beggiatoa alba B18LD]
gi|386430424|gb|EIJ44252.1| cold shock protein [Beggiatoa alba B18LD]
Length = 67
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F SKG GF+ PD G VFVH S I+
Sbjct: 1 MQTGTVKWFNESKGFGFLAPDDGSKDVFVHFSTIQ 35
>gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
ETGK+K F SKG GFITPD G +FVH + I EG G+ V++++
Sbjct: 14 ETGKVKWFNSSKGFGFITPDKGGDDLFVHQTSIHAEGFRSLREGEVVEFQV 64
>gi|91226280|ref|ZP_01261120.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|91189291|gb|EAS75570.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
Length = 70
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
TG +K F SKG GFITPD+G +FVH I EG G +V +
Sbjct: 6 TGSVKWFNESKGFGFITPDNGGSDLFVHFKSIVSEGFKTLSEGQKVSF 53
>gi|91777186|ref|YP_552394.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|91689846|gb|ABE33044.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
Length = 77
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+++G
Sbjct: 11 MATGTVKWFNDAKGFGFITPDDGGEDLFAHFSEVQGS 47
>gi|85714683|ref|ZP_01045670.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|85698568|gb|EAQ36438.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
Length = 90
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 57 PVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
P+ TG +K F KG GFI P++G VFVHIS +E
Sbjct: 21 PMTTGTVKWFNGQKGFGFIQPNNGGNDVFVHISAVE 56
>gi|115360542|ref|YP_777679.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|115285870|gb|ABI91345.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
Length = 67
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F KG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDGKGFGFITPDKGGDDLFAHFSEIRG 36
>gi|333899720|ref|YP_004473593.1| cold-shock DNA-binding domain-containing protein [Pseudomonas fulva
12-X]
gi|333114985|gb|AEF21499.1| cold-shock DNA-binding domain protein [Pseudomonas fulva 12-X]
Length = 200
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
ETG +K F SKG GFI+ D+GE +FVH I EG V + G V++
Sbjct: 131 ETGTVKWFNTSKGFGFISRDAGED-IFVHFRAIRGEGHRVLVEGQRVEF 178
>gi|15595653|ref|NP_249147.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|107099440|ref|ZP_01363358.1| hypothetical protein PaerPA_01000452 [Pseudomonas aeruginosa
PACS2]
gi|116054185|ref|YP_788629.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|152984051|ref|YP_001345954.1| putative cold-shock protein [Pseudomonas aeruginosa PA7]
gi|218889196|ref|YP_002438060.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|254237314|ref|ZP_04930637.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
gi|254243552|ref|ZP_04936874.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
gi|296386954|ref|ZP_06876453.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
gi|313111918|ref|ZP_07797708.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
gi|355646785|ref|ZP_09054620.1| major cold shock protein cspA [Pseudomonas sp. 2_1_26]
gi|386056523|ref|YP_005973045.1| putative cold-shock protein [Pseudomonas aeruginosa M18]
gi|386068634|ref|YP_005983938.1| putative cold-shock protein [Pseudomonas aeruginosa NCGM2.S1]
gi|392981866|ref|YP_006480453.1| cold-shock protein [Pseudomonas aeruginosa DK2]
gi|416856303|ref|ZP_11911947.1| putative cold-shock protein [Pseudomonas aeruginosa 138244]
gi|416874978|ref|ZP_11918471.1| putative cold-shock protein [Pseudomonas aeruginosa 152504]
gi|418584976|ref|ZP_13149033.1| putative cold-shock protein [Pseudomonas aeruginosa MPAO1/P1]
gi|418591718|ref|ZP_13155609.1| putative cold-shock protein [Pseudomonas aeruginosa MPAO1/P2]
gi|419755936|ref|ZP_14282288.1| putative cold-shock protein [Pseudomonas aeruginosa PADK2_CF510]
gi|420137037|ref|ZP_14645039.1| cold-shock protein [Pseudomonas aeruginosa CIG1]
gi|421151523|ref|ZP_15611135.1| cold-shock protein [Pseudomonas aeruginosa ATCC 14886]
gi|421157478|ref|ZP_15616846.1| cold-shock protein [Pseudomonas aeruginosa ATCC 25324]
gi|421165323|ref|ZP_15623658.1| cold-shock protein [Pseudomonas aeruginosa ATCC 700888]
gi|421172219|ref|ZP_15629995.1| cold-shock protein [Pseudomonas aeruginosa CI27]
gi|421178366|ref|ZP_15635980.1| cold-shock protein [Pseudomonas aeruginosa E2]
gi|421515072|ref|ZP_15961758.1| putative cold-shock protein [Pseudomonas aeruginosa PAO579]
gi|424943125|ref|ZP_18358888.1| probable cold-shock protein [Pseudomonas aeruginosa NCMG1179]
gi|451987569|ref|ZP_21935724.1| Cold shock protein CspE [Pseudomonas aeruginosa 18A]
gi|452881579|ref|ZP_21958305.1| cold-shock protein [Pseudomonas aeruginosa VRFPA01]
gi|9946316|gb|AAG03845.1|AE004483_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|115589406|gb|ABJ15421.1| putative major cold shock protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169245|gb|EAZ54756.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
gi|126196930|gb|EAZ60993.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
gi|150959209|gb|ABR81234.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
gi|218769419|emb|CAW25179.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|310884210|gb|EFQ42804.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
gi|334842178|gb|EGM20791.1| putative cold-shock protein [Pseudomonas aeruginosa 138244]
gi|334842531|gb|EGM21137.1| putative cold-shock protein [Pseudomonas aeruginosa 152504]
gi|346059571|dbj|GAA19454.1| probable cold-shock protein [Pseudomonas aeruginosa NCMG1179]
gi|347302829|gb|AEO72943.1| putative cold-shock protein [Pseudomonas aeruginosa M18]
gi|348037193|dbj|BAK92553.1| putative cold-shock protein [Pseudomonas aeruginosa NCGM2.S1]
gi|354828324|gb|EHF12447.1| major cold shock protein cspA [Pseudomonas sp. 2_1_26]
gi|375045308|gb|EHS37894.1| putative cold-shock protein [Pseudomonas aeruginosa MPAO1/P1]
gi|375049444|gb|EHS41940.1| putative cold-shock protein [Pseudomonas aeruginosa MPAO1/P2]
gi|384397598|gb|EIE44009.1| putative cold-shock protein [Pseudomonas aeruginosa PADK2_CF510]
gi|392317371|gb|AFM62751.1| putative cold-shock protein [Pseudomonas aeruginosa DK2]
gi|403250213|gb|EJY63667.1| cold-shock protein [Pseudomonas aeruginosa CIG1]
gi|404348800|gb|EJZ75137.1| putative cold-shock protein [Pseudomonas aeruginosa PAO579]
gi|404527206|gb|EKA37379.1| cold-shock protein [Pseudomonas aeruginosa ATCC 14886]
gi|404538080|gb|EKA47637.1| cold-shock protein [Pseudomonas aeruginosa CI27]
gi|404542182|gb|EKA51512.1| cold-shock protein [Pseudomonas aeruginosa ATCC 700888]
gi|404548420|gb|EKA57371.1| cold-shock protein [Pseudomonas aeruginosa E2]
gi|404550582|gb|EKA59320.1| cold-shock protein [Pseudomonas aeruginosa ATCC 25324]
gi|451754719|emb|CCQ88247.1| Cold shock protein CspE [Pseudomonas aeruginosa 18A]
gi|452182239|gb|EME09257.1| cold-shock protein [Pseudomonas aeruginosa VRFPA01]
gi|453045834|gb|EME93552.1| cold-shock protein [Pseudomonas aeruginosa PA21_ST175]
Length = 69
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ G +K F +KG+GFITP+SG P VFVH IEG
Sbjct: 4 QNGTVKWFNETKGYGFITPESG-PDVFVHFRAIEG 37
>gi|354614282|ref|ZP_09032157.1| cold-shock DNA-binding domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353221376|gb|EHB85739.1| cold-shock DNA-binding domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 67
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFI PD G+ VFVH S+IEG
Sbjct: 4 GTVKWFNSEKGFGFIAPDEGDGDVFVHYSEIEG 36
>gi|296115724|ref|ZP_06834350.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977701|gb|EFG84453.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 68
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F KG GF+ D G VFVHIS +E G + G +V Y L
Sbjct: 3 TGTVKWFNAQKGFGFLEADDGTADVFVHISAVERAGLHGLNEGQKVSYEL 52
>gi|383762478|ref|YP_005441460.1| putative cold shock protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382746|dbj|BAL99562.1| putative cold shock protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 122
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
E G +K F R K +GFI +G+P ++VH S ++G +P PGD V++
Sbjct: 51 ERGLVKWFNRRKQYGFIV-RAGQPEIYVHRSAVQGKRLPHPGDLVEF 96
>gi|170702637|ref|ZP_02893506.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171319239|ref|ZP_02908355.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172064865|ref|YP_001815577.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|170132457|gb|EDT00916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171095541|gb|EDT40505.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171997107|gb|ACB68024.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
Length = 67
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
++TG +K F KG GFITPD G +F H S+I G
Sbjct: 1 MDTGTVKWFNDGKGFGFITPDKGGDDLFAHFSEIRG 36
>gi|83592856|ref|YP_426608.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|386349586|ref|YP_006047834.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum F11]
gi|83575770|gb|ABC22321.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
gi|346718022|gb|AEO48037.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum F11]
Length = 68
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+ TG +K F +KG+GFI PD G VFVHI+ ++ G G +V + L
Sbjct: 1 MSTGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAFEL 52
>gi|384222066|ref|YP_005613232.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|354960965|dbj|BAL13644.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
Length = 68
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG GFI PD G VFVHIS +E G G +V Y +
Sbjct: 2 GTVKWFNATKGFGFIQPDDGGQDVFVHISAVERAGLGTLREGQKVSYEIVA 52
>gi|340786668|ref|YP_004752133.1| cold-shock DNA-binding domain-containing protein [Collimonas
fungivorans Ter331]
gi|340551935|gb|AEK61310.1| cold-shock DNA-binding domain protein [Collimonas fungivorans
Ter331]
Length = 67
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S ++EG G +V + + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAINMEGFKTLKEGQKVTFDVTQGP 56
>gi|307546402|ref|YP_003898881.1| cold shock protein CspA [Halomonas elongata DSM 2581]
gi|307218426|emb|CBV43696.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
elongata DSM 2581]
Length = 154
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC--YVPLPGDEVKYRL 107
E G++K F +KG+GFIT DSGE VFVH I G G +VKY++
Sbjct: 89 EIGEVKWFNVNKGYGFITRDSGED-VFVHFRAIRGRGHRTLAEGQKVKYQV 138
>gi|85714849|ref|ZP_01045835.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85698335|gb|EAQ36206.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 81
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 53 ALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
A + + TG +K F KG+GFI PD G VFVHIS ++
Sbjct: 8 ASEKRMSTGIVKWFNSQKGYGFIQPDGGGNDVFVHISAVQ 47
>gi|407776026|ref|ZP_11123317.1| cold-shock DNA-binding domain-containing protein [Thalassospira
profundimaris WP0211]
gi|407281098|gb|EKF06663.1| cold-shock DNA-binding domain-containing protein [Thalassospira
profundimaris WP0211]
Length = 68
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
TG +K F +KG+GFITPD G FVHI+ ++ G G ++++ L
Sbjct: 3 TGTVKWFNATKGYGFITPDEGGKDAFVHITAVQRAGLQGLDEGQKIQFELI 53
>gi|317492161|ref|ZP_07950591.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|365837378|ref|ZP_09378747.1| cold shock-like protein CspE [Hafnia alvei ATCC 51873]
gi|316919866|gb|EFV41195.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|364562110|gb|EHM39980.1| cold shock-like protein CspE [Hafnia alvei ATCC 51873]
Length = 69
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
+TG +K F SKG GFITP G VFVH S I +G G +V++ + P
Sbjct: 4 KTGHVKWFNESKGFGFITPADGSKDVFVHFSAIKSDGFKTLAEGQQVEFAIQDSP 58
>gi|304391309|ref|ZP_07373253.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
gi|303296665|gb|EFL91021.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
Length = 68
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG+GFITPD G +FVHIS +E
Sbjct: 3 GHVKFFNAAKGYGFITPDDGGADIFVHISAVE 34
>gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii
DSM 10542]
gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542]
Length = 317
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 63 IKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL-PGDEVKYRLCP 109
+ + KG GF+TPDSGEP FVH + G L GD V + + P
Sbjct: 165 VSWYDAGKGFGFVTPDSGEPDAFVHARSLAGGATELVEGDRVSFSVVP 212
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
G + + +G GFITPDSG P +FVH+S + GD V++++
Sbjct: 256 GVVARYDAERGFGFITPDSGGPDLFVHVSVVREGQELYEGDRVRFQV 302
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 69 SKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
+KG+GF+TPD G +F H S I G V G V +
Sbjct: 90 TKGYGFVTPDGGGAEIFAHSSAIVGGGVIAEGQRVAF 126
>gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC 25827]
gi|188020258|gb|EDU58298.1| cold-shock DNA-binding domain protein [Providencia stuartii ATCC
25827]
Length = 81
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
G +K F SKG GFITP+ G VFVH S I EG G +V++ +
Sbjct: 18 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIASEGFKTLAEGQKVEFEI 66
>gi|400404454|ref|YP_006587474.1| cold shock protein [Candidatus Carsonella ruddii HC isolate
Thao2000]
gi|400362975|gb|AFP84046.1| cold shock protein [Candidatus Carsonella ruddii HC isolate
Thao2000]
Length = 67
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI+PD G +FVH S+I EG G V + +
Sbjct: 1 MSTGTVKWFNDTKGFGFISPDDGGDDLFVHFSEIKLEGFKSLQDGQRVNFEVTQGKKGL- 59
Query: 116 KNQAVHVEIV 125
QA +V+I+
Sbjct: 60 --QASNVKII 67
>gi|388604519|gb|AFK76480.1| cold shock protein [Enterobacter cloacae]
Length = 70
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKGVFVHFSAIQ 38
>gi|357385158|ref|YP_004899882.1| cold shock protein CspA [Pelagibacterium halotolerans B2]
gi|351593795|gb|AEQ52132.1| cold shock protein CspA [Pelagibacterium halotolerans B2]
Length = 70
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F KG+GFI PD G VFVHIS ++ G G ++ Y +
Sbjct: 1 MATGTVKWFNTQKGYGFIQPDEGGADVFVHISAVQNSGMTGLDEGQKISYEIVK 54
>gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484]
Length = 312
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRL 107
G + F +G GFITPD+G P +FVH+S + V GD V++++
Sbjct: 251 GVVARFDPDRGFGFITPDAGGPDLFVHVSVVRNGEVLEEGDRVRFKV 297
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 40 ITRRTRTESISNRALQNPVET-GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL 98
+ RR R + + A P+ G + + +KG+GF+ PD G P +FVH S I G V
Sbjct: 61 VARRVRV--VGDVAGDAPLGVLGTVSWYEPTKGYGFVGPDGGGPEIFVHSSAIVGGGVIT 118
Query: 99 PGDEVKYRLCP 109
G V + + P
Sbjct: 119 EGQRVAFLVVP 129
>gi|344940868|ref|ZP_08780156.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
SV96]
gi|344262060|gb|EGW22331.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
SV96]
Length = 107
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLPGDEVKYRLCPIPPKFEKNQA 119
G +K + +G GFI+PD G +F+HIS ++G P+ GD + Y++ K
Sbjct: 4 GVLKTWKEDRGFGFISPDDGGKDIFIHISALKGTSRRPVTGDVIYYQVARDNRGKYKAIN 63
Query: 120 VHVEIVHLTPE 130
H+E V + +
Sbjct: 64 AHIEGVEILED 74
>gi|118579190|ref|YP_900440.1| cold-shock DNA-binding domain-containing protein [Pelobacter
propionicus DSM 2379]
gi|118501900|gb|ABK98382.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
2379]
Length = 67
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP--LPGDEVKYRLCPIPP 112
TG +K F SKG GFI D G VFVH S I G G++V Y + P
Sbjct: 3 TGTVKWFNESKGFGFIEQDDGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPK 57
>gi|15965810|ref|NP_386163.1| cold shock transcription regulator protein [Sinorhizobium meliloti
1021]
gi|334316751|ref|YP_004549370.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
meliloti AK83]
gi|384529939|ref|YP_005714027.1| cold-shock protein [Sinorhizobium meliloti BL225C]
gi|384535719|ref|YP_005719804.1| CspA1 [Sinorhizobium meliloti SM11]
gi|407721085|ref|YP_006840747.1| hypothetical protein BN406_01876 [Sinorhizobium meliloti Rm41]
gi|418405119|ref|ZP_12978542.1| cold shock protein cspA [Sinorhizobium meliloti CCNWSX0020]
gi|433613837|ref|YP_007190635.1| Cold shock protein [Sinorhizobium meliloti GR4]
gi|7387593|sp|Q9Z3S6.1|CSPA_RHIME RecName: Full=Cold shock protein CspA
gi|3776223|gb|AAC64672.1| CspA [Sinorhizobium meliloti]
gi|15075079|emb|CAC46636.1| Cold shock transcriptional regulator [Sinorhizobium meliloti 1021]
gi|333812115|gb|AEG04784.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|334095745|gb|AEG53756.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
gi|336032611|gb|AEH78543.1| CspA1 [Sinorhizobium meliloti SM11]
gi|359500928|gb|EHK73567.1| cold shock protein cspA [Sinorhizobium meliloti CCNWSX0020]
gi|407319317|emb|CCM67921.1| unnamed protein product [Sinorhizobium meliloti Rm41]
gi|429552027|gb|AGA07036.1| Cold shock protein [Sinorhizobium meliloti GR4]
Length = 69
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVH S +E G + G +V Y +
Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIV 53
>gi|119897425|ref|YP_932638.1| cold-shock protein [Azoarcus sp. BH72]
gi|119669838|emb|CAL93751.1| cold-shock protein [Azoarcus sp. BH72]
Length = 67
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S ++ G G++V + + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGP 56
>gi|398354006|ref|YP_006399470.1| cold shock protein CspA [Sinorhizobium fredii USDA 257]
gi|390129332|gb|AFL52713.1| putative cold shock protein CspA [Sinorhizobium fredii USDA 257]
Length = 70
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN-QA 119
G +K F + KG GFITPD G VFVHIS ++ + D + P + K +A
Sbjct: 5 GIVKFFNQDKGFGFITPDGGAKDVFVHISAVQAAGLATLKDGQQVSFDTEPDRMGKGPKA 64
Query: 120 VHVEIV 125
V+++ +
Sbjct: 65 VNLQAI 70
>gi|56477977|ref|YP_159566.1| cold-shock protein [Aromatoleum aromaticum EbN1]
gi|56314020|emb|CAI08665.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
Length = 67
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIP 111
+ TG +K F SKG GFITPD G +F H S ++ G G++V + + P
Sbjct: 1 MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGP 56
>gi|91792287|ref|YP_561938.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
gi|91714289|gb|ABE54215.1| cold-shock DNA-binding protein family [Shewanella denitrificans
OS217]
Length = 70
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F KG GFITPD+G VFVH I EG G +V + +
Sbjct: 6 TGLVKWFNEDKGFGFITPDNGGADVFVHFRSITSEGFKTLAEGQKVSFEV 55
>gi|419955364|ref|ZP_14471493.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri TS44]
gi|387967834|gb|EIK52130.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri TS44]
Length = 203
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
ETG +K F SKG GFI+ DSG+ VFVH I EG V G V++
Sbjct: 139 ETGTVKWFNTSKGFGFISRDSGDD-VFVHFRAIRGEGHRVLTEGQRVEF 186
>gi|187921538|ref|YP_001890570.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|385206342|ref|ZP_10033212.1| cold shock protein [Burkholderia sp. Ch1-1]
gi|187719976|gb|ACD21199.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|385186233|gb|EIF35507.1| cold shock protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+++G
Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGGEDLFAHFSEVQGS 37
>gi|49082304|gb|AAT50552.1| PA0456, partial [synthetic construct]
Length = 70
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ G +K F +KG+GFITP+SG P VFVH IEG
Sbjct: 4 QNGTVKWFNETKGYGFITPESG-PDVFVHFRAIEG 37
>gi|418049808|ref|ZP_12687895.1| cold-shock DNA-binding domain protein [Mycobacterium rhodesiae
JS60]
gi|353190713|gb|EHB56223.1| cold-shock DNA-binding domain protein [Mycobacterium rhodesiae
JS60]
Length = 67
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
G +K F KG GFI PDSG+ +FVH S+I+G
Sbjct: 4 GTVKWFNGEKGFGFIAPDSGDQDLFVHYSEIQGS 37
>gi|92116417|ref|YP_576146.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91799311|gb|ABE61686.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 69
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG GFI PD G +FVHIS +E
Sbjct: 1 MATGTVKWFNATKGFGFIQPDGGGQDIFVHISAVE 35
>gi|284007198|emb|CBA72487.1| cold shock-like protein [Arsenophonus nasoniae]
Length = 111
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 48 GQVKWFNESKGFGFITPSDGSKDVFVHFSAIQG 80
>gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa]
gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa]
Length = 207
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
+TGK+K F KG GFI+PD G +FVH S I EG G+EV++
Sbjct: 5 QTGKVKWFSDQKGFGFISPDDGSDDLFVHQSSIKSEGYRSLGDGEEVEF 53
>gi|197285535|ref|YP_002151407.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227356030|ref|ZP_03840421.1| cold shock family protein [Proteus mirabilis ATCC 29906]
gi|425068499|ref|ZP_18471615.1| cold shock-like protein CspC [Proteus mirabilis WGLW6]
gi|425072064|ref|ZP_18475170.1| cold shock-like protein CspC [Proteus mirabilis WGLW4]
gi|194683022|emb|CAR43496.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227163807|gb|EEI48715.1| cold shock family protein [Proteus mirabilis ATCC 29906]
gi|404597867|gb|EKA98360.1| cold shock-like protein CspC [Proteus mirabilis WGLW4]
gi|404599492|gb|EKA99946.1| cold shock-like protein CspC [Proteus mirabilis WGLW6]
Length = 70
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 39
>gi|254248343|ref|ZP_04941663.1| Cold shock protein [Burkholderia cenocepacia PC184]
gi|124874844|gb|EAY64834.1| Cold shock protein [Burkholderia cenocepacia PC184]
Length = 83
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
V+TG +K F +KG GFI+PD+G +F H S+I G
Sbjct: 17 VDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRG 52
>gi|406874983|gb|EKD24822.1| Cold shock protein [uncultured bacterium (gcode 4)]
Length = 64
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYR 106
TG +K F +KG GFITP G VFVH+S + G + DEV++
Sbjct: 3 TGTVKFFNTTKGFGFITPADGSKDVFVHMSALNGETIK-ENDEVQFE 48
>gi|423093852|ref|ZP_17081648.1| cold-shock DNA-binding domain protein [Pseudomonas fluorescens
Q2-87]
gi|397888399|gb|EJL04882.1| cold-shock DNA-binding domain protein [Pseudomonas fluorescens
Q2-87]
Length = 201
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 44 TRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGD 101
T+ +SNR +TG +K F SKG GFI+ DSG+ +FVH I EG V + G
Sbjct: 124 TQNYDMSNR------DTGTVKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQ 176
Query: 102 EVKY 105
V++
Sbjct: 177 RVEF 180
>gi|163792428|ref|ZP_02186405.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
gi|159182133|gb|EDP66642.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
Length = 68
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F +KG+GFI P+ G VFVHIS +E
Sbjct: 1 MATGTVKWFNATKGYGFIEPEDGSADVFVHISAVE 35
>gi|163793339|ref|ZP_02187314.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
proteobacterium BAL199]
gi|159181141|gb|EDP65656.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
proteobacterium BAL199]
Length = 70
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F KG GFI PD G FVHIS +E G G +V Y L
Sbjct: 1 MATGTVKWFNAQKGFGFIEPDGGGSDAFVHISAVERSGLSDLREGQKVDYELVS 54
>gi|341613661|ref|ZP_08700530.1| cold shock protein [Citromicrobium sp. JLT1363]
Length = 70
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+TG +K F KG+GFI PD G P FVHI+ ++
Sbjct: 2 AKTGTVKFFNADKGYGFIQPDDGSPDSFVHITAVQAA 38
>gi|300770548|ref|ZP_07080427.1| competence factor transporter ComB [Sphingobacterium spiritivorum
ATCC 33861]
gi|300763024|gb|EFK59841.1| competence factor transporter ComB [Sphingobacterium spiritivorum
ATCC 33861]
Length = 63
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIP 111
+ TG +K F +KG GFITP G VFVH + ++ GDEV Y + P
Sbjct: 1 MNTGTVKFFNETKGFGFITPQDGSADVFVHTTGLKNQV--REGDEVTYEVERTP 52
>gi|170690994|ref|ZP_02882160.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|307726662|ref|YP_003909875.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323529135|ref|YP_004231287.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|170144243|gb|EDT12405.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|307587187|gb|ADN60584.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323386137|gb|ADX58227.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 67
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+++G
Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGGEDLFAHFSEVQGS 37
>gi|339477737|ref|YP_004706557.1| putative cold shock-like protein CspD [Candidatus Moranella
endobia PCIT]
gi|338172288|gb|AEI74689.1| putative cold shock-like protein CspD [Candidatus Moranella
endobia PCIT]
Length = 69
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPTDGSKDVFVHFSAIQG 38
>gi|443308394|ref|ZP_21038180.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
H4Y]
gi|442763510|gb|ELR81509.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
H4Y]
Length = 67
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI PD G VFVH S+I+G YR E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFIAPDDGSADVFVHYSEIQGG---------GYRTL------EENQRV 48
Query: 121 HVEI 124
E+
Sbjct: 49 QFEV 52
>gi|377812067|ref|YP_005044507.1| cold-shock protein [Burkholderia sp. YI23]
gi|413959704|ref|ZP_11398935.1| cold-shock protein [Burkholderia sp. SJ98]
gi|357941428|gb|AET94984.1| cold-shock DNA-binding domain protein [Burkholderia sp. YI23]
gi|413939654|gb|EKS71622.1| cold-shock protein [Burkholderia sp. SJ98]
Length = 67
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
++TG +K F SKG GFITPD G +F H S+I EG +V Y
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEIRAEGFKTLAENQKVSY 50
>gi|297580078|ref|ZP_06942005.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
RC385]
gi|297535724|gb|EFH74558.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
RC385]
Length = 70
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFITPD G VFVH + I G G +V + +
Sbjct: 6 TGSVKWFNENKGFGFITPDIGGSDVFVHFNSIASGGVKTLFEGQKVNFSI 55
>gi|74316873|ref|YP_314613.1| cold-shock DNA-binding protein family protein [Thiobacillus
denitrificans ATCC 25259]
gi|74056368|gb|AAZ96808.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
denitrificans ATCC 25259]
Length = 68
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
+ TG +K F +KG GFITPD G VF H S I+ G G +V + + P
Sbjct: 1 MATGTVKWFSDAKGFGFITPDDGGEDVFAHFSAIQTNGFKTLKEGQKVSFEVSQGP 56
>gi|348618346|ref|ZP_08884874.1| cold shock-like protein [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347816393|emb|CCD29586.1| cold shock-like protein [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 81
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI----EGCYVPLPGDEVKYRLCPIPPKFEK 116
G++K F KG GFITPD G +FVH S+I G G V + + P
Sbjct: 13 GQVKWFSDGKGFGFITPDEGHEDLFVHFSEIASQDNGFRTLKEGSRVSFEIGESPK---G 69
Query: 117 NQAVHVEI 124
QA+ +EI
Sbjct: 70 KQALKIEI 77
>gi|257057657|ref|YP_003135489.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|375103072|ref|ZP_09749335.1| cold shock protein [Saccharomonospora cyanea NA-134]
gi|381163559|ref|ZP_09872789.1| cold shock protein [Saccharomonospora azurea NA-128]
gi|383829850|ref|ZP_09984939.1| cold shock protein [Saccharomonospora xinjiangensis XJ-54]
gi|384567892|ref|ZP_10014996.1| cold shock protein [Saccharomonospora glauca K62]
gi|418459494|ref|ZP_13030612.1| cold-shock DNA-binding protein family [Saccharomonospora azurea
SZMC 14600]
gi|256587529|gb|ACU98662.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|359740393|gb|EHK89235.1| cold-shock DNA-binding protein family [Saccharomonospora azurea
SZMC 14600]
gi|374663804|gb|EHR63682.1| cold shock protein [Saccharomonospora cyanea NA-134]
gi|379255464|gb|EHY89390.1| cold shock protein [Saccharomonospora azurea NA-128]
gi|383462503|gb|EID54593.1| cold shock protein [Saccharomonospora xinjiangensis XJ-54]
gi|384523746|gb|EIF00942.1| cold shock protein [Saccharomonospora glauca K62]
Length = 67
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFI D GE VFVH S+IEG
Sbjct: 4 GTVKWFNAEKGFGFIAQDGGEGDVFVHYSEIEG 36
>gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica]
gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica]
Length = 69
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F SKG GFITP G VFVH S I +G G +V++ +
Sbjct: 5 TGTVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQKVEFEI 54
>gi|242239550|ref|YP_002987731.1| cold-shock DNA-binding domain-containing protein [Dickeya
dadantii Ech703]
gi|242131607|gb|ACS85909.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 70
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD+G VFVH S I+
Sbjct: 6 TGLVKWFDAGKGFGFITPDNGSKDVFVHFSAIQ 38
>gi|92116020|ref|YP_575749.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91798914|gb|ABE61289.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 68
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG+GFI PD G VFVH+S +E G G ++ Y +
Sbjct: 2 GTVKWFNATKGYGFIQPDDGGNDVFVHVSAVERAGLGTLREGQKISYEIVA 52
>gi|417861905|ref|ZP_12506960.1| cold shock protein [Agrobacterium tumefaciens F2]
gi|338822309|gb|EGP56278.1| cold shock protein [Agrobacterium tumefaciens F2]
Length = 74
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ + L
Sbjct: 8 TGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMRELVEGQKIGFEL 57
>gi|226330749|ref|ZP_03806267.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
gi|225201544|gb|EEG83898.1| cold shock domain protein CspD [Proteus penneri ATCC 35198]
Length = 69
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
+ETG +K F +KG GFITP+ G +F H S I EG G +V Y P
Sbjct: 1 METGTVKWFNNAKGFGFITPEKGGEDIFAHYSTIRMEGYRTLKAGQKVNYSTIKGP 56
>gi|409394618|ref|ZP_11245780.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
Chol1]
gi|409120672|gb|EKM97013.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
Chol1]
Length = 203
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
ETG +K F SKG GFI+ DSG+ VFVH I EG V G V++
Sbjct: 139 ETGTVKWFNTSKGFGFISRDSGDD-VFVHFRAIRGEGHRVLTEGQRVEF 186
>gi|389696755|ref|ZP_10184397.1| cold shock protein [Microvirga sp. WSM3557]
gi|388585561|gb|EIM25856.1| cold shock protein [Microvirga sp. WSM3557]
Length = 69
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
+E G +K + +KG+GFI PD+G VFVH + +E G G ++ Y L
Sbjct: 1 MEQGTVKWYNETKGYGFIQPDNGGKDVFVHATALERAGMRGLREGQKISYEL 52
>gi|417389714|ref|ZP_12153429.1| Cold shock protein CspD [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353621084|gb|EHC71006.1| Cold shock protein CspD [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 63
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYR--------L 107
+ETG +K F +KG GFI P+ G VF H S I+ G G V+YR +
Sbjct: 1 METGTVKWFNNAKGFGFICPEGGGEDVFAHYSTIQMDGYRTLKAGQSVRYRTLKAGQSTV 60
Query: 108 CPI 110
CP+
Sbjct: 61 CPV 63
>gi|258542856|ref|YP_003188289.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|384042777|ref|YP_005481521.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-12]
gi|384051294|ref|YP_005478357.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-03]
gi|384054402|ref|YP_005487496.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-07]
gi|384057636|ref|YP_005490303.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-22]
gi|384060277|ref|YP_005499405.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-26]
gi|384063569|ref|YP_005484211.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-32]
gi|384119579|ref|YP_005502203.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|421850498|ref|ZP_16283455.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus NBRC 101655]
gi|421853997|ref|ZP_16286638.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|256633934|dbj|BAH99909.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|256636993|dbj|BAI02962.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-03]
gi|256640046|dbj|BAI06008.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-07]
gi|256643102|dbj|BAI09057.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-22]
gi|256646157|dbj|BAI12105.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-26]
gi|256649210|dbj|BAI15151.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-32]
gi|256652197|dbj|BAI18131.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655254|dbj|BAI21181.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-12]
gi|371458697|dbj|GAB28658.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus NBRC 101655]
gi|371477731|dbj|GAB31841.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 67
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHI+ ++
Sbjct: 3 TGTVKWFNATKGYGFIAPDDGGKDVFVHITAVQ 35
>gi|126731182|ref|ZP_01746990.1| cold shock family protein [Sagittula stellata E-37]
gi|126708484|gb|EBA07542.1| cold shock family protein [Sagittula stellata E-37]
Length = 68
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F +KG+GFI PD G VFVHIS +E
Sbjct: 4 GTVKWFNTTKGYGFIQPDEGGKDVFVHISAVE 35
>gi|402849295|ref|ZP_10897534.1| cold-shock DNA-binding domain protein [Rhodovulum sp. PH10]
gi|402500425|gb|EJW12098.1| cold-shock DNA-binding domain protein [Rhodovulum sp. PH10]
Length = 67
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
++ G +K F +KG+GFI P +G+ VFVHIS +E G G V+Y L
Sbjct: 1 MQKGTVKWFNPTKGYGFIRPSTGDKDVFVHISAVERAGLSTLNEGQVVEYELV 53
>gi|384216749|ref|YP_005607915.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
gi|354955648|dbj|BAL08327.1| cold shock protein [Bradyrhizobium japonicum USDA 6]
Length = 69
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ TG +K F KG GFI PD G VFVHIS +E
Sbjct: 1 MNTGTVKWFNGQKGFGFIQPDQGSQDVFVHISAVE 35
>gi|308188556|ref|YP_003932687.1| cold shock-like protein cspA [Pantoea vagans C9-1]
gi|308059066|gb|ADO11238.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
Length = 70
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGLVKWFNSDKGFGFITPDDGSKDVFVHFSAIQ 38
>gi|78062299|ref|YP_372207.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
383]
gi|107026255|ref|YP_623766.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|116692558|ref|YP_838091.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170738189|ref|YP_001779449.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|206563468|ref|YP_002234231.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
J2315]
gi|421864546|ref|ZP_16296231.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
H111]
gi|444357518|ref|ZP_21159050.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
BC7]
gi|444366713|ref|ZP_21166731.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
K56-2Valvano]
gi|77970184|gb|ABB11563.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
gi|105895629|gb|ABF78793.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
AU 1054]
gi|116650558|gb|ABK11198.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
gi|169820377|gb|ACA94959.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
gi|198039508|emb|CAR55475.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
J2315]
gi|358075166|emb|CCE47109.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
H111]
gi|443604190|gb|ELT72149.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
K56-2Valvano]
gi|443606301|gb|ELT74093.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
BC7]
Length = 67
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
++TG +K F +KG GFI+PD+G +F H S+I G
Sbjct: 1 MDTGTVKWFNETKGFGFISPDNGGDDLFAHFSEIRGT 37
>gi|410636786|ref|ZP_11347377.1| cold shock-like protein cspD [Glaciecola lipolytica E3]
gi|410143592|dbj|GAC14582.1| cold shock-like protein cspD [Glaciecola lipolytica E3]
Length = 72
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
GK+K F +KG GFI PD G +F H S I +G G EV Y + P
Sbjct: 3 VGKVKWFNNAKGFGFIIPDDGGEDIFAHYSTIKMDGYRSLKAGQEVTYEVQQGP------ 56
Query: 118 QAVHVEIVHLTPE 130
+ +H E + ++ E
Sbjct: 57 KGLHAENIGISDE 69
>gi|346991263|ref|ZP_08859335.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TW15]
Length = 68
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F +KG GFI P++G VFVHIS +E + D+ K P + + AV
Sbjct: 4 GTVKWFNTTKGFGFIAPETGGKDVFVHISAVERSGLTGLADDQKVTFDIEPGRDGRESAV 63
Query: 121 HVEI 124
++ +
Sbjct: 64 NIAL 67
>gi|319405285|emb|CBI78899.1| cold shock protein [Bartonella sp. AR 15-3]
Length = 69
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ TG +K F +KG GFI P+ G VFVHIS +E G + G ++ Y +
Sbjct: 1 MSTGTVKWFNTNKGFGFIQPNDGSADVFVHISALERSGLHDLNEGQKISYDIL 53
>gi|213969178|ref|ZP_03397317.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
gi|301384826|ref|ZP_07233244.1| cold-shock protein [Pseudomonas syringae pv. tomato Max13]
gi|302130616|ref|ZP_07256606.1| cold-shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213926176|gb|EEB59732.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
Length = 202
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 44 TRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGD 101
T++ + NR +TG +K F SKG GFI+ DSG+ +FVH I EG V + G
Sbjct: 125 TQSHDMGNR------DTGTVKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQ 177
Query: 102 EVKY 105
V++
Sbjct: 178 RVEF 181
>gi|110679166|ref|YP_682173.1| cold shock family protein-related protein [Roseobacter
denitrificans OCh 114]
gi|339502526|ref|YP_004689946.1| cold shock protein CspA [Roseobacter litoralis Och 149]
gi|109455282|gb|ABG31487.1| cold shock family protein-related protein, putative [Roseobacter
denitrificans OCh 114]
gi|338756519|gb|AEI92983.1| cold shock protein CspA [Roseobacter litoralis Och 149]
Length = 68
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI P+ G VFVHIS +E
Sbjct: 3 TGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVE 35
>gi|312795412|ref|YP_004028334.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312167187|emb|CBW74190.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 67
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
+ETG +K F +KG+GFIT DSG +F H S+I
Sbjct: 1 METGIVKWFNDAKGYGFITADSGGEDLFAHFSEI 34
>gi|91226269|ref|ZP_01261109.1| cold shock protein [Vibrio alginolyticus 12G01]
gi|375263733|ref|YP_005025963.1| cold-shock protein, DNA-binding protein [Vibrio sp. EJY3]
gi|91189280|gb|EAS75559.1| cold shock protein [Vibrio alginolyticus 12G01]
gi|369844160|gb|AEX24988.1| cold-shock protein, DNA-binding protein [Vibrio sp. EJY3]
Length = 70
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 59 ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
ETG +K F +KG GFIT DS +FVH I +G L G +V + + P
Sbjct: 5 ETGSVKWFNENKGFGFITKDSDGKDIFVHFRSISSDGFKTLLEGQKVSFEVEP 57
>gi|37525773|ref|NP_929117.1| hypothetical protein plu1842 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785202|emb|CAE14135.1| unnamed protein product [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 70
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 39
>gi|375097796|ref|ZP_09744061.1| cold shock protein [Saccharomonospora marina XMU15]
gi|374658529|gb|EHR53362.1| cold shock protein [Saccharomonospora marina XMU15]
Length = 67
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFI D GE VFVH S+IEG
Sbjct: 4 GTVKWFNAEKGFGFIAQDGGEGDVFVHYSEIEG 36
>gi|387612310|ref|YP_006115426.1| cold shock-like protein CspC [Escherichia coli ETEC H10407]
gi|309702046|emb|CBJ01360.1| cold shock-like protein CspC [Escherichia coli ETEC H10407]
Length = 69
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>gi|339324031|ref|YP_004682924.1| cold shock-like protein CspA [Cupriavidus necator N-1]
gi|338172024|gb|AEI83076.1| cold shock-like protein CspA [Cupriavidus necator N-1]
Length = 67
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ TG +K F +KG GFITPD G +F H S+++G
Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGGDDLFAHFSEVQG 36
>gi|422297544|ref|ZP_16385179.1| Cold shock protein CspC [Pseudomonas avellanae BPIC 631]
gi|422651743|ref|ZP_16714535.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330964818|gb|EGH65078.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407991010|gb|EKG32966.1| Cold shock protein CspC [Pseudomonas avellanae BPIC 631]
Length = 202
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 44 TRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGD 101
T++ + NR +TG +K F SKG GFI+ DSG+ +FVH I EG V + G
Sbjct: 125 TQSHDMGNR------DTGTVKWFNTSKGFGFISRDSGDD-IFVHFRAIRGEGHRVLVEGQ 177
Query: 102 EVKY 105
V++
Sbjct: 178 RVEF 181
>gi|443672649|ref|ZP_21137731.1| Cold-shock DNA-binding domain protein [Rhodococcus sp. AW25M09]
gi|443414815|emb|CCQ16069.1| Cold-shock DNA-binding domain protein [Rhodococcus sp. AW25M09]
Length = 149
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE-GCYVPLPGDEVKY 105
TGK+ F KG+GF+ PD G VF+H++D++ + PG V+Y
Sbjct: 4 TGKVIRFDEFKGYGFVAPDEGGEDVFIHVNDLDFDKRLLAPGVRVEY 50
>gi|377819980|ref|YP_004976351.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp.
YI23]
gi|357934815|gb|AET88374.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp.
YI23]
Length = 90
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPP 112
+ TG +K F +KG+GFITPD G +F H S I+ G G +V + + P
Sbjct: 23 MSTGTVKWFNDAKGYGFITPDEGGEDLFAHFSAIQMNGFKTLKEGQKVSFEIVQGPK 79
>gi|290474928|ref|YP_003467812.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
gi|300722620|ref|YP_003711910.1| cold shock transcription antiterminator [Xenorhabdus nematophila
ATCC 19061]
gi|289174245|emb|CBJ81034.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
gi|297629127|emb|CBJ89717.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus nematophila
ATCC 19061]
Length = 70
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 39
>gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare ATCC 13950]
gi|379744802|ref|YP_005335623.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare ATCC 13950]
gi|379752090|ref|YP_005340762.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare MOTT-02]
gi|379759515|ref|YP_005345912.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare MOTT-64]
gi|387873487|ref|YP_006303791.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
MOTT36Y]
gi|378797166|gb|AFC41302.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare ATCC 13950]
gi|378802306|gb|AFC46441.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare MOTT-02]
gi|378807457|gb|AFC51591.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare MOTT-64]
gi|386786945|gb|AFJ33064.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
MOTT36Y]
Length = 67
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 15/64 (23%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI PD G VFVH S+I+G YR E+NQ V
Sbjct: 4 GTVKWFNGEKGFGFIAPDDGSADVFVHYSEIQGG---------GYR------SLEENQRV 48
Query: 121 HVEI 124
E+
Sbjct: 49 QFEV 52
>gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703]
gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 69
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGT 39
>gi|408369386|ref|ZP_11167167.1| cold-shock DNA-binding domain-containing protein [Galbibacter sp.
ck-I2-15]
gi|407745132|gb|EKF56698.1| cold-shock DNA-binding domain-containing protein [Galbibacter sp.
ck-I2-15]
Length = 64
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
TG +K F SKG+GFIT D +FVH++ + G + GD+V+Y
Sbjct: 2 TGTVKFFNESKGYGFITNDDTGKDIFVHVTALNGVELN-EGDKVEY 46
>gi|323529334|ref|YP_004231486.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|407710172|ref|YP_006794036.1| Cold shock-like protein [Burkholderia phenoliruptrix BR3459a]
gi|323386336|gb|ADX58426.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
gi|407238855|gb|AFT89053.1| Cold shock-like protein [Burkholderia phenoliruptrix BR3459a]
Length = 67
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
++TG +K F SKG GFITPD G +F H S+I
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDKGGDDLFAHFSEI 34
>gi|225022302|ref|ZP_03711494.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
ATCC 33806]
gi|224944899|gb|EEG26108.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
ATCC 33806]
Length = 73
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 55 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKF 114
+N + G +K F KG GFI P+ G VFVH S+I GD +Y
Sbjct: 3 ENTMAKGAVKWFNAEKGFGFIEPEDGSADVFVHYSEI-------NGDGFRY--------L 47
Query: 115 EKNQAVHVEI 124
E+NQ V E+
Sbjct: 48 EENQVVEFEV 57
>gi|197284583|ref|YP_002150455.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227356765|ref|ZP_03841150.1| cold shock family protein [Proteus mirabilis ATCC 29906]
gi|425067475|ref|ZP_18470591.1| cold shock-like protein CspD [Proteus mirabilis WGLW6]
gi|425073088|ref|ZP_18476194.1| cold shock-like protein CspD [Proteus mirabilis WGLW4]
gi|194682070|emb|CAR41608.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227163055|gb|EEI47990.1| cold shock family protein [Proteus mirabilis ATCC 29906]
gi|404595973|gb|EKA96504.1| cold shock-like protein CspD [Proteus mirabilis WGLW4]
gi|404601306|gb|EKB01719.1| cold shock-like protein CspD [Proteus mirabilis WGLW6]
Length = 69
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIP 111
+ETG +K F +KG GFITP +G +F H S I EG G +V Y P
Sbjct: 1 METGTVKWFNNAKGFGFITPAAGGEDIFAHYSSIRMEGYRTLKAGQKVNYSTIKGP 56
>gi|71907020|ref|YP_284607.1| cold-shock DNA-binding protein family protein [Dechloromonas
aromatica RCB]
gi|71846641|gb|AAZ46137.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB]
Length = 67
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F SKG GFITPD G +F H S I+ G G +V + + P +
Sbjct: 1 MATGTVKWFNDSKGFGFITPDQGGEDLFAHFSAIQSSGFKTLTEGQKVSFDVTTGPKGLQ 60
>gi|413963447|ref|ZP_11402674.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp.
SJ98]
gi|413929279|gb|EKS68567.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp.
SJ98]
Length = 68
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIP 111
+ TG +K F +KG+GFITPD G +F H S I+ G G +V + + P
Sbjct: 1 MSTGTVKWFNDAKGYGFITPDEGGEDLFAHFSAIQMNGFKTLKEGQKVSFEIVQGP 56
>gi|400404680|ref|YP_006587655.1| cold shock protein [Candidatus Carsonella ruddii HT isolate
Thao2000]
gi|400363156|gb|AFP84226.1| cold shock protein [Candidatus Carsonella ruddii HT isolate
Thao2000]
Length = 67
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
+ TG +K F +KG GFI+PD G +FVH S+I EG G V + +
Sbjct: 1 MATGTVKWFNDTKGFGFISPDDGGDDLFVHFSEIKLEGFKSLQDGQRVNFEVTQGKKGL- 59
Query: 116 KNQAVHVEIV 125
QA +V+I+
Sbjct: 60 --QASNVKII 67
>gi|387890024|ref|YP_006320322.1| cold shock-like protein CspE [Escherichia blattae DSM 4481]
gi|386924857|gb|AFJ47811.1| cold shock-like protein CspE [Escherichia blattae DSM 4481]
Length = 111
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 48 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT 97
>gi|385680517|ref|ZP_10054445.1| cold shock protein [Amycolatopsis sp. ATCC 39116]
Length = 67
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFITPD G VFVH S+I+G
Sbjct: 4 GTVKWFNSEKGFGFITPDDGGGDVFVHYSEIQG 36
>gi|15233440|ref|NP_195326.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
gi|75318587|sp|O65639.1|CSP1_ARATH RecName: Full=Cold shock protein 1; Short=AtCSP1; AltName:
Full=Cold shock domain-containing protein 1
gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana]
gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana]
gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
Length = 299
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLP-GDEVKYRLCPIPPKFEK 116
TGK+ F SKG+GFITPD G +FVH S I EG Y L GD V++ + K
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEG-YRSLTVGDAVEFAI--TQGSDGK 68
Query: 117 NQAVHV 122
+AV+V
Sbjct: 69 TKAVNV 74
>gi|86137410|ref|ZP_01055987.1| cold shock family protein [Roseobacter sp. MED193]
gi|85825745|gb|EAQ45943.1| cold shock family protein [Roseobacter sp. MED193]
Length = 72
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVK 104
+G +K F +KG GFI PD+G VFVHIS +E + D +K
Sbjct: 3 SGTVKWFNTTKGFGFIEPDAGGSDVFVHISQVERSGLTGLADNMK 47
>gi|420137698|ref|ZP_14645659.1| hypothetical protein PACIG1_1155 [Pseudomonas aeruginosa CIG1]
gi|421161014|ref|ZP_15619993.1| hypothetical protein PABE173_3573 [Pseudomonas aeruginosa ATCC
25324]
gi|403249544|gb|EJY63039.1| hypothetical protein PACIG1_1155 [Pseudomonas aeruginosa CIG1]
gi|404541353|gb|EKA50717.1| hypothetical protein PABE173_3573 [Pseudomonas aeruginosa ATCC
25324]
Length = 240
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 47 ESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
E+ S R + + G I + KG GFI P +G VF+HIS G P GD+V +
Sbjct: 4 ETGSERVDVDMEKPGMISRWYDDKGFGFILPKTGGEEVFLHISAFRGDRRPRQGDQVWF 62
>gi|374572804|ref|ZP_09645900.1| cold shock protein [Bradyrhizobium sp. WSM471]
gi|386400167|ref|ZP_10084945.1| cold shock protein [Bradyrhizobium sp. WSM1253]
gi|374421125|gb|EHR00658.1| cold shock protein [Bradyrhizobium sp. WSM471]
gi|385740793|gb|EIG60989.1| cold shock protein [Bradyrhizobium sp. WSM1253]
Length = 70
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 4 GTVKWFNATKGFGFIQPDDGGQDVFVHISAVERAGLGTLREGQKISYEIVA 54
>gi|212709456|ref|ZP_03317584.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
DSM 30120]
gi|261344215|ref|ZP_05971859.1| conserved domain protein [Providencia rustigianii DSM 4541]
gi|422008175|ref|ZP_16355160.1| cold shock transcription antiterminator [Providencia rettgeri
Dmel1]
gi|422018603|ref|ZP_16365160.1| cold shock transcription antiterminator [Providencia
alcalifaciens Dmel2]
gi|212687794|gb|EEB47322.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
DSM 30120]
gi|282567812|gb|EFB73347.1| conserved domain protein [Providencia rustigianii DSM 4541]
gi|414096310|gb|EKT57969.1| cold shock transcription antiterminator [Providencia rettgeri
Dmel1]
gi|414104895|gb|EKT66460.1| cold shock transcription antiterminator [Providencia
alcalifaciens Dmel2]
Length = 70
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 7 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 39
>gi|83858279|ref|ZP_00951801.1| cold-shock domain family protein [Oceanicaulis sp. HTCC2633]
gi|83853102|gb|EAP90954.1| cold-shock domain family protein [Oceanicaulis sp. HTCC2633]
Length = 70
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVP 97
TG +K F +KG+GFI PD G VFVH S +E +P
Sbjct: 3 TGIVKWFNSTKGYGFIQPDDGSKDVFVHASAVERAGMP 40
>gi|91785349|ref|YP_560555.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|187925500|ref|YP_001897142.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|209516559|ref|ZP_03265413.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|307731142|ref|YP_003908366.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323527488|ref|YP_004229641.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|385207912|ref|ZP_10034780.1| cold shock protein [Burkholderia sp. Ch1-1]
gi|91689303|gb|ABE32503.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|187716694|gb|ACD17918.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|209503000|gb|EEA03002.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|307585677|gb|ADN59075.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323384490|gb|ADX56581.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
gi|385180250|gb|EIF29526.1| cold shock protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
+ETG +K F +KG GFITPD G +F H S+I
Sbjct: 1 METGTVKWFNDAKGFGFITPDGGGEDLFAHFSEI 34
>gi|421152059|ref|ZP_15611650.1| hypothetical protein PABE171_0993 [Pseudomonas aeruginosa ATCC
14886]
gi|404526045|gb|EKA36282.1| hypothetical protein PABE171_0993 [Pseudomonas aeruginosa ATCC
14886]
Length = 240
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 47 ESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
E+ S R + + G I + KG GFI P +G VF+HIS G P GD+V +
Sbjct: 4 ETGSERVDVDMEKPGMISRWYDDKGFGFILPKTGGEEVFLHISAFRGDRRPRQGDQVWF 62
>gi|404442208|ref|ZP_11007389.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vaccae ATCC 25954]
gi|403657479|gb|EJZ12252.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vaccae ATCC 25954]
Length = 67
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
G +K F KG GFI PD G P VFVH S+I G
Sbjct: 4 GTVKWFNGDKGFGFIAPDGGAPDVFVHYSEIGGS 37
>gi|377579279|ref|ZP_09808249.1| cold shock-like protein CspG [Escherichia hermannii NBRC 105704]
gi|377539389|dbj|GAB53414.1| cold shock-like protein CspG [Escherichia hermannii NBRC 105704]
Length = 70
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD+G VFVH S I+
Sbjct: 6 TGLVKWFNADKGFGFITPDNGGKDVFVHFSAIQ 38
>gi|418940734|ref|ZP_13494088.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
gi|375052558|gb|EHS48971.1| cold-shock DNA-binding domain protein [Rhizobium sp. PDO1-076]
Length = 71
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
ETG +K F KG GFI PD+G +FVHIS ++
Sbjct: 2 AETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQ 36
>gi|260597049|ref|YP_003209620.1| cold shock protein CspE [Cronobacter turicensis z3032]
gi|260216226|emb|CBA29122.1| Cold shock-like protein cspE [Cronobacter turicensis z3032]
Length = 97
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 34 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT 83
>gi|209547690|ref|YP_002279607.1| cold-shock DNA-binding domain-containing protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|424915755|ref|ZP_18339119.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
gi|209533446|gb|ACI53381.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392851931|gb|EJB04452.1| cold shock protein [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 69
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI PD+G FVHIS +E G + G ++ + L
Sbjct: 3 TGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMRELVEGQKIGFDL 52
>gi|429083441|ref|ZP_19146482.1| Cold shock protein CspA [Cronobacter condimenti 1330]
gi|426547688|emb|CCJ72523.1| Cold shock protein CspA [Cronobacter condimenti 1330]
Length = 70
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD+G VFVH S I+
Sbjct: 6 TGLVKWFNAEKGFGFITPDNGSKDVFVHFSAIQ 38
>gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|440510020|ref|YP_007347456.1| cold shock-like protein CspC [Candidatus Blochmannia chromaiodes
str. 640]
gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|440454233|gb|AGC03725.1| cold shock-like protein CspC [Candidatus Blochmannia chromaiodes
str. 640]
Length = 69
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPSDGSKDVFVHFSAIQG 38
>gi|15597156|ref|NP_250650.1| hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
gi|9947958|gb|AAG05348.1|AE004622_10 hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
Length = 240
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 47 ESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKY 105
E+ S R + + G I + KG GFI P +G VF+HIS G P GD+V +
Sbjct: 4 ETGSERVDVDMEKPGMISRWYDDKGFGFILPKTGGEEVFLHISAFRGDRRPRQGDQVWF 62
>gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum
SCRI1043]
gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str.
'morsitans']
gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163]
gi|403058417|ref|YP_006646634.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|421079660|ref|ZP_15540598.1| Cold shock-like protein CspC [Pectobacterium wasabiae CFBP 3304]
gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans']
gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
gi|385871724|gb|AFI90244.1| Cold shock-like protein cspE [Pectobacterium sp. SCC3193]
gi|401705746|gb|EJS95931.1| Cold shock-like protein CspC [Pectobacterium wasabiae CFBP 3304]
gi|402805743|gb|AFR03381.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 69
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>gi|410943314|ref|ZP_11375055.1| transcriptional regulator cold shock protein DNA-binding protein
[Gluconobacter frateurii NBRC 101659]
Length = 68
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
TG +K F +KG GFI P+ G VFVHIS++E G G EV + +
Sbjct: 3 TGTVKWFNPTKGFGFIQPEGGAQDVFVHISEVERAGLRTLNEGQEVSFEV 52
>gi|310287193|ref|YP_003938451.1| Cold shock protein [Bifidobacterium bifidum S17]
gi|313139892|ref|ZP_07802085.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
bifidum NCIMB 41171]
gi|309251129|gb|ADO52877.1| Cold shock protein [Bifidobacterium bifidum S17]
gi|313132402|gb|EFR50019.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
bifidum NCIMB 41171]
Length = 89
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
N+ + G +K F KG+GFIT D+G VFVH S I +G GD+V+Y
Sbjct: 16 NKGKNITMAQGTVKFFSAGKGYGFITSDAGGDDVFVHYSVIQADGFKTLNEGDKVEYEAE 75
Query: 109 PIPPKFEKNQAVHV 122
P + + V +
Sbjct: 76 RGPKGMQATKVVKL 89
>gi|120601923|ref|YP_966323.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio
vulgaris DP4]
gi|120562152|gb|ABM27896.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris DP4]
Length = 177
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCY-VPLPGDEVKYRL 107
++ GKI ++ ++G GFITPD VFVHIS Y +P G+ V Y L
Sbjct: 2 LKQGKIAQWNDARGFGFITPDDATRRVFVHISAFRHRYPLPQAGERVFYYL 52
>gi|72383861|ref|YP_293215.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72123204|gb|AAZ65358.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 67
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+ TG +K F +KG GFITPD G +F H S+++G
Sbjct: 1 MATGTVKWFNDAKGFGFITPDDGGDDLFAHFSEVQGS 37
>gi|400406444|ref|YP_006589192.1| cold shock protein [secondary endosymbiont of Heteropsylla
cubana]
gi|400364697|gb|AFP85764.1| cold shock protein [secondary endosymbiont of Heteropsylla
cubana]
Length = 69
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>gi|390165717|ref|ZP_10217997.1| cold-shock DNA-binding domain-containing protein [Sphingobium
indicum B90A]
gi|389591397|gb|EIM69365.1| cold-shock DNA-binding domain-containing protein [Sphingobium
indicum B90A]
Length = 274
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L +G +K F KG GFI D G+P FVHIS +E G GD + + L
Sbjct: 198 QRQLTGERASGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGMSALNEGDRLDFEL 256
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFI D G VFVHIS +E
Sbjct: 103 TGVVKFFNGQKGFGFIVRDDGGEDVFVHISAVE 135
>gi|386829541|ref|ZP_10116648.1| cold shock protein [Beggiatoa alba B18LD]
gi|386829542|ref|ZP_10116649.1| cold shock protein [Beggiatoa alba B18LD]
gi|386430425|gb|EIJ44253.1| cold shock protein [Beggiatoa alba B18LD]
gi|386430426|gb|EIJ44254.1| cold shock protein [Beggiatoa alba B18LD]
Length = 67
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
++TG +K F SKG GF+ PD G VFVH S I+
Sbjct: 1 MQTGTVKWFNESKGFGFLAPDDGGKDVFVHFSTIQ 35
>gi|338997011|ref|ZP_08635716.1| cold-shock DNA-binding protein family protein [Halomonas sp. TD01]
gi|338766084|gb|EGP21011.1| cold-shock DNA-binding protein family protein [Halomonas sp. TD01]
Length = 67
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
+ TG +K F +KG+GFI+PD G +F H S+I EG G +V + +
Sbjct: 1 MATGTVKWFNETKGYGFISPDDGGDDLFAHFSEIQAEGFKTLQDGQKVSFEVT 53
>gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S]
gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S]
Length = 272
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 51 NRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
R L +G +K F KG GFI D G+P FVHIS +E G GD + + L
Sbjct: 196 QRQLTGERASGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGMSALNEGDRLDFEL 254
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFI D G VFVHIS +E
Sbjct: 101 TGVVKFFNGQKGFGFIVRDDGGEDVFVHISAVE 133
>gi|188586202|ref|YP_001917747.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350889|gb|ACB85159.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 67
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
TG +K F KG+GFI +SGE VFVH S I EG G EV++ +
Sbjct: 3 TGTVKWFDSKKGYGFIERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVE 54
>gi|144899530|emb|CAM76394.1| Cold-shock protein, DNA-binding [Magnetospirillum gryphiswaldense
MSR-1]
Length = 70
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F KG GFI PD G FVHIS +E G G ++ Y L
Sbjct: 1 MATGTVKWFNAQKGFGFIAPDDGSNDAFVHISAVERSGIGDLREGQKIGYELVA 54
>gi|448242583|ref|YP_007406636.1| hypothetical protein SMWW4_v1c28220 [Serratia marcescens WW4]
gi|445212947|gb|AGE18617.1| hypothetical protein SMWW4_v1c28220 [Serratia marcescens WW4]
gi|453065297|gb|EMF06260.1| cold shock protein [Serratia marcescens VGH107]
gi|453066331|gb|EMF07278.1| cold shock protein [Serratia marcescens VGH107]
gi|453066922|gb|EMF07840.1| cold shock protein [Serratia marcescens VGH107]
Length = 69
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F SKG GFITP G VFVH S I +G G +V++ +
Sbjct: 5 TGHVKWFNESKGFGFITPADGSKDVFVHFSAIVSDGFKTLAEGQQVEFSI 54
>gi|86360861|ref|YP_472748.1| cold shock protein [Rhizobium etli CFN 42]
gi|86284963|gb|ABC94021.1| putative cold shock protein [Rhizobium etli CFN 42]
Length = 69
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG GFI PD G VFVHIS +E G G ++ ++L
Sbjct: 4 GTVKWFNSTKGFGFIQPDDGSADVFVHISAVERAGMSSIAEGQKLGFQL 52
>gi|50121397|ref|YP_050564.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|227328628|ref|ZP_03832652.1| cold shock protein [Pectobacterium carotovorum subsp. carotovorum
WPP14]
gi|261821404|ref|YP_003259510.1| cold-shock protein [Pectobacterium wasabiae WPP163]
gi|421079206|ref|ZP_15540151.1| Cold shock protein CspG [Pectobacterium wasabiae CFBP 3304]
gi|49611923|emb|CAG75372.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|261605417|gb|ACX87903.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
gi|385871643|gb|AFI90163.1| Cold shock-like protein cspI [Pectobacterium sp. SCC3193]
gi|401706393|gb|EJS96571.1| Cold shock protein CspG [Pectobacterium wasabiae CFBP 3304]
Length = 70
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD+G VFVH S I+
Sbjct: 6 TGLVKWFDAGKGFGFITPDNGSKDVFVHFSAIQ 38
>gi|27376556|ref|NP_768085.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27349697|dbj|BAC46710.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 70
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
G +K F +KG GFI PD G VFVHIS +E G G ++ Y +
Sbjct: 4 GTVKWFNATKGFGFIQPDDGGKDVFVHISAVERAGLGTLREGQKISYEIVA 54
>gi|24112787|ref|NP_707297.1| cold shock-like protein CspC [Shigella flexneri 2a str. 301]
gi|82543745|ref|YP_407692.1| cold shock-like protein CspC [Shigella boydii Sb227]
gi|33301070|sp|Q83RI9.3|CSPC_SHIFL RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|24051715|gb|AAN43004.1| cold shock protein [Shigella flexneri 2a str. 301]
gi|81245156|gb|ABB65864.1| cold shock protein [Shigella boydii Sb227]
Length = 69
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
gi|365971040|ref|YP_004952601.1| cold shock-like protein CspC [Enterobacter cloacae EcWSU1]
gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
gi|365749953|gb|AEW74180.1| Cold shock-like protein CspC [Enterobacter cloacae EcWSU1]
Length = 71
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 8 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 40
>gi|222086573|ref|YP_002545107.1| cold shock protein [Agrobacterium radiobacter K84]
gi|398381748|ref|ZP_10539854.1| cold shock protein [Rhizobium sp. AP16]
gi|440227351|ref|YP_007334442.1| cold-shock protein CspG [Rhizobium tropici CIAT 899]
gi|221724021|gb|ACM27177.1| cold shock protein [Agrobacterium radiobacter K84]
gi|397718829|gb|EJK79410.1| cold shock protein [Rhizobium sp. AP16]
gi|440038862|gb|AGB71896.1| cold-shock protein CspG [Rhizobium tropici CIAT 899]
Length = 71
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
ETG +K F KG GFI PD G +FVHIS ++ + + K P + K
Sbjct: 2 AETGTVKFFNTDKGFGFIKPDKGGADIFVHISAVQASGLAGLSENQKVSFDTEPDRRGKG 61
Query: 118 -QAVHVEIV 125
+AV+++I
Sbjct: 62 PKAVNLQIA 70
>gi|207856095|ref|YP_002242746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|378698582|ref|YP_005180539.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|206707898|emb|CAR32186.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|301157230|emb|CBW16717.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
Length = 70
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 7 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 56
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,549,638,925
Number of Sequences: 23463169
Number of extensions: 106654487
Number of successful extensions: 173923
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2834
Number of HSP's successfully gapped in prelim test: 740
Number of HSP's that attempted gapping in prelim test: 170870
Number of HSP's gapped (non-prelim): 3755
length of query: 140
length of database: 8,064,228,071
effective HSP length: 104
effective length of query: 36
effective length of database: 9,919,025,791
effective search space: 357084928476
effective search space used: 357084928476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)