BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3654
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24
 pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24
 pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24
 pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24
          Length = 147

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)

Query: 35  LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
           +PSP+ TRRTRT S + RA Q PV  G  K FCRSKGHGFITP  G P +F+HISD+EG 
Sbjct: 39  VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98

Query: 95  YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
           YVP+ GDEV Y++C IPPK EK QAV V I HL P   H  W
Sbjct: 99  YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140


>pdb|2BH8|A Chain A, Combinatorial Protein 1b11
 pdb|2BH8|B Chain B, Combinatorial Protein 1b11
          Length = 101

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 54  LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHIS-DIEGCYV---PLPGDEVKYRLCP 109
           LQ+   TG +K F   KG GFITPD G   VFVH S    G  V   P  GD V+ ++  
Sbjct: 12  LQSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKS 71

Query: 110 IPP 112
           I  
Sbjct: 72  ITD 74


>pdb|3I2Z|B Chain B, Structure Of Cold Shock Protein E From Salmonella
           Typhimurium
 pdb|3I2Z|A Chain A, Structure Of Cold Shock Protein E From Salmonella
           Typhimurium
          Length = 71

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 61  GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
           G +K F  SKG GFITP+ G   VFVH S I+  G      G  V++ + 
Sbjct: 8   GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 57


>pdb|2L15|A Chain A, Solution Structure Of Cold Shock Protein Cspa Using
          Combined Nmr And Cs-Rosetta Method
          Length = 70

 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
          TG +K F   KG GFITPD G   VFVH S I+
Sbjct: 6  TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38


>pdb|1MJC|A Chain A, Crystal Structure Of Cspa, The Major Cold Shock Protein
          Of Escherichia Coli
          Length = 69

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
          TG +K F   KG GFITPD G   VFVH S I+
Sbjct: 5  TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 37


>pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution
          Nmr Structure
          Length = 69

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
          TG +K F   KG GFITPD G   VFVH S I+
Sbjct: 5  TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 37


>pdb|3CAM|A Chain A, Crystal Structure Of The Cold Shock Domain Protein From
           Neisseria Meningitidis
 pdb|3CAM|B Chain B, Crystal Structure Of The Cold Shock Domain Protein From
           Neisseria Meningitidis
          Length = 67

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 60  TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
           TG +K F  +KG GFITPD G   +F H S I  EG      G  V + +   P   +  
Sbjct: 3   TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINXEGFKTLKEGQRVSFDVTTGP---KGK 59

Query: 118 QAVHVE 123
           QA +++
Sbjct: 60  QAANIQ 65


>pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From The
           Hyperthermophilic Bacterium Thermotoga Maritima
          Length = 66

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 61  GKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRLCPIPPKFEKNQ 118
           GK+K F   KG+GFIT D G   VFVH S  ++EG      G  V++    I    +  Q
Sbjct: 3   GKVKWFDSKKGYGFITKDEG-GDVFVHWSAIEMEGFKTLKEGQVVEF---EIQEGKKGPQ 58

Query: 119 AVHVEIV 125
           A HV++V
Sbjct: 59  AAHVKVV 65


>pdb|1HZA|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study
           Determinants Of Protein Stability
 pdb|1HZA|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study
           Determinants Of Protein Stability
          Length = 67

 Score = 35.4 bits (80), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 58  VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
           ++ GK+K F   KG+GFI  + G   VFVH + I  EG      G EV + +  
Sbjct: 1   MQRGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQGEGFKTLEEGQEVSFEIVQ 53


>pdb|1I5F|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study
           Determinants Of Protein Stability
 pdb|1I5F|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study
           Determinants Of Protein Stability
          Length = 66

 Score = 35.4 bits (80), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 58  VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
           ++ GK+K F   KG+GFI  + G   VFVH + I  EG      G EV + +  
Sbjct: 1   MQEGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQGEGFKTLEEGQEVSFEIVQ 53


>pdb|1C9O|A Chain A, Crystal Structure Analysis Of The Bacillus Caldolyticus
           Cold Shock Protein Bc-Csp
 pdb|1C9O|B Chain B, Crystal Structure Analysis Of The Bacillus Caldolyticus
           Cold Shock Protein Bc-Csp
 pdb|2HAX|A Chain A, Crystal Structure Of Bacillus Caldolyticus Cold Shock
           Protein In Complex With Hexathymidine
 pdb|2HAX|B Chain B, Crystal Structure Of Bacillus Caldolyticus Cold Shock
           Protein In Complex With Hexathymidine
          Length = 66

 Score = 35.4 bits (80), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 58  VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
           ++ GK+K F   KG+GFI  + G   VFVH + I  EG      G EV + +  
Sbjct: 1   MQRGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQGEGFKTLEEGQEVSFEIVQ 53


>pdb|1HZB|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study
           Determinants Of Protein Stability
 pdb|1HZB|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study
           Determinants Of Protein Stability
          Length = 66

 Score = 35.4 bits (80), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 58  VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
           ++ GK+K F   KG+GFI  + G   VFVH + I  EG      G EV + +  
Sbjct: 1   MQRGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQGEGFKTLEEGQEVSFEIVQ 53


>pdb|1HZ9|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 pdb|1HZ9|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score = 34.7 bits (78), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
          ++ GK+K F   KG+GFI  + G   VFVH + I+G
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQG 35


>pdb|1HZC|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 pdb|1HZC|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score = 34.7 bits (78), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
          ++ GK+K F   KG+GFI  + G   VFVH + I+G
Sbjct: 1  MQEGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQG 35


>pdb|2I5M|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock Protein
           Cspb Variant A46k S48r
          Length = 67

 Score = 33.9 bits (76), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 61  GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCP 109
           GK+K F   KG GFI  + G+  VFVH S I  EG      G +V++ +  
Sbjct: 4   GKVKWFNSEKGFGFIEVE-GQDDVFVHFSAIQGEGFKTLEEGQKVRFEIVE 53


>pdb|2LSS|A Chain A, Solution Structure Of The R. Rickettsii Cold Shock-like
           Protein
          Length = 70

 Score = 33.9 bits (76), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 60  TGKIKEFCRSKGHGFITPDSGEPAVFVHIS--DIEGCYVPLPGDEVKYRL 107
            GK+K +  +K  GFI  D+G   VFVH S  D  G +    G +V + L
Sbjct: 6   VGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDL 55


>pdb|2ES2|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Cold
          Shock Protein Bs-Cspb In Complex With Hexathymidine
 pdb|2F52|A Chain A, Solution Structure Of Cold Shock Protein Cspb From
          Bacillus Subtilis In Complex With Heptathymidine
 pdb|1CSP|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
          Shock Protein, Cspb: A Universal Nucleic-Acid Binding
          Domain
 pdb|1CSQ|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
          Shock Protein, Cspb: A Universal Nucleic-Acid Binding
          Domain
 pdb|1NMF|A Chain A, Major Cold-Shock Protein, Nmr, 20 Structures
 pdb|1NMG|A Chain A, Major Cold-Shock Protein, Nmr, Minimized Average
          Structure
 pdb|3PF4|A Chain A, Crystal Structure Of Bs-Cspb In Complex With R(Gucuuua)
 pdb|3PF4|B Chain B, Crystal Structure Of Bs-Cspb In Complex With R(Gucuuua)
 pdb|3PF5|A Chain A, Crystal Structure Of Bs-Cspb In Complex With Ru6
 pdb|3PF5|B Chain B, Crystal Structure Of Bs-Cspb In Complex With Ru6
          Length = 67

 Score = 33.5 bits (75), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
          GK+K F   KG GFI  + G+  VFVH S I+G
Sbjct: 4  GKVKWFNSEKGFGFIEVE-GQDDVFVHFSAIQG 35


>pdb|2I5L|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
          Protein Variant Bs-Cspb M1rE3KK65I
          Length = 67

 Score = 33.5 bits (75), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
          GK+K F   KG GFI  + G+  VFVH S I+G
Sbjct: 4  GKVKWFNSEKGFGFIEVE-GQDDVFVHFSAIQG 35


>pdb|3A0J|A Chain A, Crystal Structure Of Cold Shock Protein 1 From Thermus
           Thermophilus Hb8
 pdb|3A0J|B Chain B, Crystal Structure Of Cold Shock Protein 1 From Thermus
           Thermophilus Hb8
          Length = 73

 Score = 31.6 bits (70), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 58  VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFE 115
           ++ G++K F   KG+GFI  + G+  VFVH + I  +G      GD V + + P     +
Sbjct: 1   MQKGRVKWFNAEKGYGFIERE-GDTDVFVHYTAINAKGFRTLNEGDIVTFDVEP-GRNGK 58

Query: 116 KNQAVHVEIV 125
             QAV+V +V
Sbjct: 59  GPQAVNVTVV 68


>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
 pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
          Length = 753

 Score = 28.9 bits (63), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 25/68 (36%)

Query: 56  NPVETGKIKEFCRS-------------KGHGFITPDS-----------GEPAVFVHISDI 91
           N VETG +   C+S                GFIT DS            +P + + +SDI
Sbjct: 175 NAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQMLI-VSDI 233

Query: 92  EGCYVPLP 99
           E  ++P+P
Sbjct: 234 EDVFIPMP 241


>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
           BOUND To The Transport Signal Sequence Of Vesicular
           Stomatitis Virus Glycoprotein
 pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
           Bound To The Transport Signal Sequence Of The Snare
           Protein Bet1
          Length = 748

 Score = 28.9 bits (63), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 25/68 (36%)

Query: 56  NPVETGKIKEFCRS-------------KGHGFITPDS-----------GEPAVFVHISDI 91
           N VETG +   C+S                GFIT DS            +P + + +SDI
Sbjct: 170 NAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQMLI-VSDI 228

Query: 92  EGCYVPLP 99
           E  ++P+P
Sbjct: 229 EDVFIPMP 236


>pdb|2KCM|A Chain A, Solution Nmr Structure Of The N-Terminal Ob-Domain Of
          So_1732 From Shewanella Oneidensis. Northeast
          Structural Genomics Consortium Target Sor210a
          Length = 74

 Score = 28.9 bits (63), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI 91
          GK+  +  +K +GFI  D GE + F+H S++
Sbjct: 3  GKVVSYLAAKKYGFIQGDDGE-SYFLHFSEL 32


>pdb|2XGG|A Chain A, Structure Of Toxoplasma Gondii Micronemal Protein 2 A_i
           Domain
 pdb|2XGG|B Chain B, Structure Of Toxoplasma Gondii Micronemal Protein 2 A_i
           Domain
          Length = 178

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 107 LCPIPPKFEKNQAVHVEIVHLTPEVHLQWDSPSP 140
           + PI P+ E N AV    V  + +VHLQWD  SP
Sbjct: 48  VLPIGPE-EVNNAV----VTYSTDVHLQWDLQSP 76


>pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
           Thymine Dimer
 pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
           Thymine Dimer
          Length = 517

 Score = 26.9 bits (58), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 93  GCYVPLPGDEVKYRLCP----IPPKFEKNQAVHVEIVHLTPE 130
           G    +PG   K RLCP    +PP F+K +AV  E+  +  +
Sbjct: 136 GVRAAMPGFIAK-RLCPQLIIVPPNFDKYRAVSKEVKEILAD 176


>pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
           Polymerase Kappa
 pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
           Polymerase Kappa
          Length = 459

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 93  GCYVPLPGDEVKYRLCP----IPPKFEKNQAVHVEI 124
           G    +PG   K RLCP    +PP F+K +AV  E+
Sbjct: 80  GVRAAMPGFIAK-RLCPQLIIVPPNFDKYRAVSKEV 114


>pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
 pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
 pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
           Polymerase Kappa Opposite The 7,8-Dihydro-8-
           Oxodeoxyguanosine Adduct
 pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
           Polymerase Kappa Opposite The 7,8-Dihydro-8-
           Oxodeoxyguanosine Adduct
 pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
           Polymerase Kappa Opposite The 7,8-Dihydro-8-
           Oxodeoxyguanosine Adduct
 pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
           Polymerase Kappa Opposite The 7,8-Dihydro-8-
           Oxodeoxyguanosine Adduct
 pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
           Opposite An 8-Oxog Dna Lesion
 pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
           Opposite An 8-Oxog Dna Lesion
          Length = 508

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 93  GCYVPLPGDEVKYRLCP----IPPKFEKNQAVHVEIVHLTPE 130
           G    +PG   K RLCP    +PP F+K +AV  E+  +  +
Sbjct: 129 GVRAAMPGFIAK-RLCPQLIIVPPNFDKYRAVSKEVKEILAD 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,953
Number of Sequences: 62578
Number of extensions: 193405
Number of successful extensions: 411
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 28
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)