BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3654
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVA0|Y9705_DROME Cold shock domain-containing protein CG9705 OS=Drosophila
melanogaster GN=CG9705 PE=1 SV=1
Length = 143
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHG 73
+L+ + P LH N+ +L LPSPIITRRTRT S S RAL+NPV TG +K F R+KGHG
Sbjct: 10 LLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHG 69
Query: 74 FITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEVHL 133
FITP++G VF H+SDIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I HLTPEVH
Sbjct: 70 FITPNAGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISHLTPEVHH 129
Query: 134 QWDSP 138
+W+ P
Sbjct: 130 KWEEP 134
>sp|Q9Y2V2|CHSP1_HUMAN Calcium-regulated heat stable protein 1 OS=Homo sapiens GN=CARHSP1
PE=1 SV=2
Length = 147
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>sp|Q9WU49|CHSP1_RAT Calcium-regulated heat stable protein 1 OS=Rattus norvegicus
GN=Carhsp1 PE=1 SV=1
Length = 147
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 39 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 99 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 140
>sp|Q9CR86|CHSP1_MOUSE Calcium-regulated heat stable protein 1 OS=Mus musculus GN=Carhsp1
PE=1 SV=1
Length = 148
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
+PSP+ TRRTRT S + RA Q PV G K FCRSKGHGFITP G P +F+HISD+EG
Sbjct: 40 VPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++C IPPK EK QAV V I HL P H W
Sbjct: 100 YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW 141
>sp|Q63430|CSDC2_RAT Cold shock domain-containing protein C2 OS=Rattus norvegicus
GN=Csdc2 PE=2 SV=3
Length = 154
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWD 136
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 148
>sp|Q9Y534|CSDC2_HUMAN Cold shock domain-containing protein C2 OS=Homo sapiens GN=CSDC2
PE=2 SV=1
Length = 153
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 148
>sp|Q91YQ3|CSDC2_MOUSE Cold shock domain-containing protein C2 OS=Mus musculus GN=Csdc2
PE=2 SV=2
Length = 154
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQWDS 137
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWSG 149
>sp|P55390|Y4CH_RHISN Probable cold shock protein y4cH OS=Rhizobium sp. (strain NGR234)
GN=NGR_a00060 PE=4 SV=1
Length = 69
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
+ TG +K F +KG GFI PD G VFVHIS +E G G ++ Y L
Sbjct: 2 MATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVK 55
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPSDGSKDVFVHFSSIQG 38
>sp|Q9Z3S6|CSPA_RHIME Cold shock protein CspA OS=Rhizobium meliloti (strain 1021) GN=cspA
PE=2 SV=1
Length = 69
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
+ +G +K F +KG GFI PD G VFVH S +E G + G +V Y +
Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIV 53
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLP-GDEVKYRLCPIPPKFEK 116
TGK+ F SKG+GFITPD G +FVH S I EG Y L GD V++ + K
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEG-YRSLTVGDAVEFAI--TQGSDGK 68
Query: 117 NQAVHV 122
+AV+V
Sbjct: 69 TKAVNV 74
>sp|Q83RI9|CSPC_SHIFL Cold shock-like protein CspC OS=Shigella flexneri GN=cspC PE=3
SV=3
Length = 69
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|P0A9Y9|CSPC_SALTY Cold shock-like protein CspC OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspC PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|P0A9Z0|CSPC_SALTI Cold shock-like protein CspC OS=Salmonella typhi GN=cspC PE=3
SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|E0J500|CSPC_ECOLW Cold shock-like protein CspC OS=Escherichia coli (strain ATCC
9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 /
W) GN=cspC PE=1 SV=1
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|P0A9Y6|CSPC_ECOLI Cold shock-like protein CspC OS=Escherichia coli (strain K12)
GN=cspC PE=1 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|P0A9Y7|CSPC_ECOL6 Cold shock-like protein CspC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspC PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|P0A9Y8|CSPC_ECO57 Cold shock-like protein CspC OS=Escherichia coli O157:H7 GN=cspC
PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>sp|P0A352|CSPA_BORPE Cold shock-like protein CspA OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=cspA PE=3 SV=1
Length = 67
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ETG +K F KG+GFITP++G +F H S+I+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQ 35
>sp|P0A354|CSPA_BORPA Cold shock-like protein CspA OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=cspA PE=3 SV=1
Length = 67
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ETG +K F KG+GFITP++G +F H S+I+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQ 35
>sp|P0A353|CSPA_BORBR Cold shock-like protein CspA OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=cspA PE=3 SV=1
Length = 67
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
+ETG +K F KG+GFITP++G +F H S+I+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQ 35
>sp|P0A975|CSPE_SHIFL Cold shock-like protein CspE OS=Shigella flexneri GN=cspE PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 55
>sp|E0J1Q3|CSPE_ECOLW Cold shock-like protein CspE OS=Escherichia coli (strain ATCC 9637
/ CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
GN=cspE PE=1 SV=1
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 55
>sp|P0A972|CSPE_ECOLI Cold shock-like protein CspE OS=Escherichia coli (strain K12)
GN=cspE PE=1 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 55
>sp|P0A973|CSPE_ECOL6 Cold shock-like protein CspE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspE PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 55
>sp|P0A974|CSPE_ECO57 Cold shock-like protein CspE OS=Escherichia coli O157:H7 GN=cspE
PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 55
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEIT 55
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEIT 55
>sp|P0A981|CSPG_SHIFL Cold shock-like protein CspG OS=Shigella flexneri GN=cspG PE=3
SV=1
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH + I+
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQ 38
>sp|P0A978|CSPG_ECOLI Cold shock-like protein CspG OS=Escherichia coli (strain K12)
GN=cspG PE=1 SV=1
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH + I+
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQ 38
>sp|P0A979|CSPG_ECOL6 Cold shock-like protein CspG OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspG PE=3 SV=1
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH + I+
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQ 38
>sp|P0A980|CSPG_ECO57 Cold shock-like protein CspG OS=Escherichia coli O157:H7 GN=cspG
PE=3 SV=1
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH + I+
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQ 38
>sp|P0A9Y4|CSPA_SHIFL Cold shock protein CspA OS=Shigella flexneri GN=cspA PE=3 SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|P0A9Y2|CSPA_SALTY Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cspA PE=3 SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|P0A9Y3|CSPA_SALTI Cold shock protein CspA OS=Salmonella typhi GN=cspA PE=3 SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|P0A9Y5|CSPA_SALEN Cold shock protein CspA OS=Salmonella enteritidis GN=cspA PE=3
SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|Q46664|CSPA_ENTAK Major cold shock protein OS=Enterobacter aerogenes (strain ATCC
13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 /
NCIMB 10102 / NCTC 10006) GN=cspA PE=3 SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|P0A9X9|CSPA_ECOLI Cold shock protein CspA OS=Escherichia coli (strain K12) GN=cspA
PE=1 SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|P0A9Y0|CSPA_ECOL6 Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=cspA PE=3 SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|P0A9Y1|CSPA_ECO57 Cold shock protein CspA OS=Escherichia coli O157:H7 GN=cspA PE=3
SV=2
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH S I+
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQ 38
>sp|Q01761|CSP7_STRC2 Cold shock-like protein 7.0 OS=Streptomyces clavuligerus (strain
ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB
12785 / NRRL 3585 / VKM Ac-602) GN=SC7.0 PE=1 SV=1
Length = 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQA 119
TG +K F KG GFI D G P VFVH S I + +R E+NQ
Sbjct: 3 TGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAI---------NATGFR------SLEENQV 47
Query: 120 VHVEIVH 126
V+ ++ H
Sbjct: 48 VNFDVTH 54
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLC 108
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLSEGQSVEFEIT 55
>sp|P63848|CSPA_MYCTU Probable cold shock protein A OS=Mycobacterium tuberculosis GN=cspA
PE=3 SV=1
Length = 67
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI P+ G VFVH ++I+G +R E+NQ V
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGT---------GFRTL------EENQKV 48
Query: 121 HVEIVH 126
EI H
Sbjct: 49 EFEIGH 54
>sp|P63849|CSPA_MYCBO Probable cold shock protein A OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=cspA PE=3 SV=1
Length = 67
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
G +K F KG GFI P+ G VFVH ++I+G +R E+NQ V
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGT---------GFRTL------EENQKV 48
Query: 121 HVEIVH 126
EI H
Sbjct: 49 EFEIGH 54
>sp|Q9KL16|CSPV_VIBCH Cold shock protein CspV OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cspV PE=2 SV=1
Length = 70
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
TG +K F +KG GF+T D+G VFVH + I EG G V +
Sbjct: 6 TGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSF 53
>sp|O67327|CSP_AQUAE Cold shock-like protein OS=Aquifex aeolicus (strain VF5) GN=csp
PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLC 108
G +K F + KG+GFIT + VFVH +DI EG G +V++ +
Sbjct: 5 GTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVEFDVV 54
>sp|Q9KN00|CSPA_VIBCH Cold shock-like protein CspA OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=cspA PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F +KG GFI+ D+G VFVH I EG G V + +
Sbjct: 6 TGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTV 55
>sp|P0A362|CSPB_YERPE Cold shock-like protein CspB OS=Yersinia pestis GN=cspB PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFI+P G VFVH S I+G
Sbjct: 6 TGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQG 39
>sp|P0A363|CSPB_YEREN Cold shock-like protein CspB OS=Yersinia enterocolitica GN=cspB
PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TG +K F KG GFI+P G VFVH S I+G
Sbjct: 6 TGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQG 39
>sp|Q45099|CSPD_BACCE Cold shock-like protein CspD OS=Bacillus cereus GN=cspD PE=1 SV=1
Length = 66
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG-CYVPL-PGDEVKYRLCP 109
++TGK+K F KG GFI + GE VFVH S I+G + L G EV + +
Sbjct: 1 MQTGKVKWFNGEKGFGFIEVEGGED-VFVHFSAIQGDGFKTLEEGQEVSFEIVD 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,567,319
Number of Sequences: 539616
Number of extensions: 2560215
Number of successful extensions: 4209
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 4103
Number of HSP's gapped (non-prelim): 156
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)