Your job contains 1 sequence.
>psy3654
MSGSPLPFENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVET
GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV
HVEIVHLTPEVHLQWDSPSP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3654
(140 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036661 - symbol:CG9705 species:7227 "Drosophila m... 436 4.6e-41 1
UNIPROTKB|Q2NKU4 - symbol:CARHSP1 "Uncharacterized protei... 324 3.4e-29 1
UNIPROTKB|I3LCU9 - symbol:CARHSP1 "Uncharacterized protei... 322 5.6e-29 1
MGI|MGI:1196368 - symbol:Carhsp1 "calcium regulated heat ... 319 1.2e-28 1
RGD|708415 - symbol:Carhsp1 "calcium regulated heat stabl... 319 1.2e-28 1
UNIPROTKB|E2R913 - symbol:CARHSP1 "Uncharacterized protei... 318 1.5e-28 1
UNIPROTKB|Q9Y2V2 - symbol:CARHSP1 "Calcium-regulated heat... 318 1.5e-28 1
UNIPROTKB|E1C8P8 - symbol:CARHSP1 "Uncharacterized protei... 317 1.9e-28 1
UNIPROTKB|H3BNU9 - symbol:CARHSP1 "Calcium-regulated heat... 307 2.2e-27 1
UNIPROTKB|Q9Y534 - symbol:CSDC2 "Cold shock domain-contai... 302 7.3e-27 1
UNIPROTKB|F1SRD7 - symbol:CSDC2 "Uncharacterized protein"... 302 7.3e-27 1
MGI|MGI:2146027 - symbol:Csdc2 "cold shock domain contain... 302 7.3e-27 1
RGD|628780 - symbol:Csdc2 "cold shock domain containing C... 302 7.3e-27 1
UNIPROTKB|F1NMV8 - symbol:CSDC2 "Uncharacterized protein"... 301 9.4e-27 1
UNIPROTKB|Q08E16 - symbol:CSDC2 "Cold shock domain contai... 301 9.4e-27 1
ZFIN|ZDB-GENE-040426-1479 - symbol:carhsp1 "calcium regul... 301 9.4e-27 1
UNIPROTKB|H3BPY5 - symbol:CARHSP1 "Calcium-regulated heat... 293 6.6e-26 1
UNIPROTKB|H3BUY4 - symbol:CARHSP1 "Calcium-regulated heat... 289 1.8e-25 1
ZFIN|ZDB-GENE-110419-1 - symbol:csdc2b "cold shock domain... 282 9.7e-25 1
UNIPROTKB|E2RRI6 - symbol:CSDC2 "Uncharacterized protein"... 272 1.1e-23 1
ZFIN|ZDB-GENE-040718-442 - symbol:csdc2a "cold shock doma... 269 2.3e-23 1
UNIPROTKB|H3BSW7 - symbol:CARHSP1 "Calcium-regulated heat... 250 2.4e-21 1
UNIPROTKB|I3L3X8 - symbol:CARHSP1 "Calcium-regulated heat... 178 1.0e-13 1
UNIPROTKB|H7C4E7 - symbol:CSDC2 "Cold shock domain-contai... 164 3.1e-12 1
TAIR|locus:2135139 - symbol:CSDP1 "cold shock domain prot... 104 3.3e-05 1
TIGR_CMR|SPO_1275 - symbol:SPO_1275 "cold shock family pr... 97 3.9e-05 1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia... 94 8.1e-05 1
TIGR_CMR|SPO_0437 - symbol:SPO_0437 "cold shock family pr... 94 8.1e-05 1
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia... 93 0.00010 1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia... 93 0.00010 1
TIGR_CMR|CPS_2895 - symbol:CPS_2895 "cold shock-like prot... 92 0.00013 1
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia... 90 0.00021 1
TIGR_CMR|CPS_0718 - symbol:CPS_0718 "cold-shock DNA-bindi... 90 0.00021 1
TIGR_CMR|CPS_0737 - symbol:CPS_0737 "cold-shock DNA-bindi... 88 0.00035 1
UNIPROTKB|H3BTK3 - symbol:CARHSP1 "Calcium-regulated heat... 87 0.00045 1
TIGR_CMR|BA_5115 - symbol:BA_5115 "cold shock protein Csp... 87 0.00045 1
UNIPROTKB|P63848 - symbol:cspA "Probable cold shock prote... 86 0.00057 1
UNIPROTKB|Q9KL16 - symbol:cspV "Cold shock protein CspV" ... 86 0.00057 1
TIGR_CMR|VC_A0933 - symbol:VC_A0933 "cold shock domain fa... 86 0.00057 1
UNIPROTKB|P0A986 - symbol:cspI species:83333 "Escherichia... 85 0.00072 1
UNIPROTKB|Q9KSW4 - symbol:cspD "Cold shock-like protein C... 85 0.00072 1
TIGR_CMR|SO_1648 - symbol:SO_1648 "cold shock domain fami... 85 0.00072 1
TIGR_CMR|SPO_3625 - symbol:SPO_3625 "cold shock protein C... 85 0.00072 1
TIGR_CMR|VC_1142 - symbol:VC_1142 "cold shock-like protei... 85 0.00072 1
UNIPROTKB|Q9KMY2 - symbol:VC_A0184 "Cold shock DNA-bindin... 84 0.00093 1
UNIPROTKB|Q9KN00 - symbol:cspA "Cold shock-like protein C... 84 0.00093 1
TIGR_CMR|VC_A0166 - symbol:VC_A0166 "cold shock transcrip... 84 0.00093 1
TIGR_CMR|VC_A0184 - symbol:VC_A0184 "cold shock DNA-bindi... 84 0.00093 1
>FB|FBgn0036661 [details] [associations]
symbol:CG9705 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 SMART:SM00357 Prosite:PS00352 EMBL:AE014296
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:NOG239041 InterPro:IPR019844
GeneTree:ENSGT00390000000022 OMA:CHVSDIE EMBL:AY060441
RefSeq:NP_648920.1 RefSeq:NP_730197.1 UniGene:Dm.7196 HSSP:P0A9X9
ProteinModelPortal:Q9VVA0 SMR:Q9VVA0 MINT:MINT-760000 STRING:Q9VVA0
PaxDb:Q9VVA0 PRIDE:Q9VVA0 EnsemblMetazoa:FBtr0075324
EnsemblMetazoa:FBtr0075325 EnsemblMetazoa:FBtr0333607 GeneID:39875
KEGG:dme:Dmel_CG9705 UCSC:CG9705-RA FlyBase:FBgn0036661
InParanoid:Q9VVA0 OrthoDB:EOG4STQN2 PhylomeDB:Q9VVA0 ChiTaRS:CG9705
GenomeRNAi:39875 NextBio:815832 Bgee:Q9VVA0 Uniprot:Q9VVA0
Length = 143
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 83/132 (62%), Positives = 101/132 (76%)
Query: 12 KPALSSPMLSPQEPHLHSNN-----TLSLPSPIITRRTRTESISNRALQNPVETGKIKEF 66
+P +L+ + P LH N+ +L LPSPIITRRTRT S S RAL+NPV TG +K F
Sbjct: 3 EPRTPEKLLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARALENPVVTGMVKSF 62
Query: 67 CRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVH 126
R+KGHGFITP++G VF H+SDIEG YVP+PGDEVKYRLC IPPK+EK+QAVHV+I H
Sbjct: 63 SRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISH 122
Query: 127 LTPEVHLQWDSP 138
LTPEVH +W+ P
Sbjct: 123 LTPEVHHKWEEP 134
>UNIPROTKB|Q2NKU4 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:23589 eggNOG:NOG239041
HOGENOM:HOG000059524 HOVERGEN:HBG050947 OMA:PDIFVHI
OrthoDB:EOG4V4390 InterPro:IPR019844 GeneTree:ENSGT00390000000022
EMBL:DAAA02057413 EMBL:BC111637 IPI:IPI00685329
RefSeq:NP_001039416.1 UniGene:Bt.88637 Ensembl:ENSBTAT00000001890
GeneID:506760 KEGG:bta:506760 InParanoid:Q2NKU4 NextBio:20867742
Uniprot:Q2NKU4
Length = 147
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 73/141 (51%), Positives = 88/141 (62%)
Query: 1 MSGSPLPFENKKPA--LSSPMLSPQEPHLHSNNTLS---LPSPIITRRTRTESISNRALQ 55
MS P P ++ P S+ +L Q+ S + L +PSP+ TRRTRT S + RA Q
Sbjct: 1 MSSEPPP-PSQPPTHQSSTGLLDTQQARDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQ 59
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFE 115
PV G K FCRSKGHGFITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK E
Sbjct: 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPMEGDEVTYKMCSIPPKNE 119
Query: 116 KNQAVHVEIVHLTPEV-HLQW 135
K QAV V I HL P H W
Sbjct: 120 KLQAVEVVITHLAPGTKHETW 140
>UNIPROTKB|I3LCU9 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:PDIFVHI InterPro:IPR019844
GeneTree:ENSGT00390000000022 EMBL:FP089531
Ensembl:ENSSSCT00000026974 Uniprot:I3LCU9
Length = 158
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 72/139 (51%), Positives = 83/139 (59%)
Query: 1 MSGSPLPFENKKPALSSPMLSPQEPHLHSNNTLS---LPSPIITRRTRTESISNRALQNP 57
MS P P SS L Q S + L +PSP+ TRRTRT S + RA Q P
Sbjct: 13 MSSEPPPPSQPPTHQSSVGLDTQRARDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGP 72
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
+ G K FCRSKGHGFITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK
Sbjct: 73 IYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKL 132
Query: 118 QAVHVEIVHLTPEV-HLQW 135
QAV V I HL P H W
Sbjct: 133 QAVEVVITHLAPGTKHETW 151
>MGI|MGI:1196368 [details] [associations]
symbol:Carhsp1 "calcium regulated heat stable protein 1"
species:10090 "Mus musculus" [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 MGI:MGI:1196368 GO:GO:0005829 GO:GO:0006355
GO:GO:0003677 GO:GO:0003730 GO:GO:0000932 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488 CTD:23589
eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
OMA:PDIFVHI OrthoDB:EOG4V4390 GO:GO:0043186 InterPro:IPR019844
EMBL:AF414101 EMBL:AK004711 EMBL:AK002853 EMBL:AK003926
EMBL:BC011225 IPI:IPI00133349 RefSeq:NP_080097.1 UniGene:Mm.142095
ProteinModelPortal:Q9CR86 SMR:Q9CR86 STRING:Q9CR86
PhosphoSite:Q9CR86 PaxDb:Q9CR86 PRIDE:Q9CR86
Ensembl:ENSMUST00000008537 GeneID:52502 KEGG:mmu:52502
GeneTree:ENSGT00390000000022 InParanoid:Q9CR86 ChiTaRS:CARHSP1
NextBio:448331 Bgee:Q9CR86 CleanEx:MM_CARHSP1 Genevestigator:Q9CR86
GermOnline:ENSMUSG00000008393 Uniprot:Q9CR86
Length = 148
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 67/122 (54%), Positives = 78/122 (63%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 22 LDTPRTRDRSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 79
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HL 133
ITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV V I HL P H
Sbjct: 80 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHE 139
Query: 134 QW 135
W
Sbjct: 140 TW 141
>RGD|708415 [details] [associations]
symbol:Carhsp1 "calcium regulated heat stable protein 1"
species:10116 "Rattus norvegicus" [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=ISO;ISS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0019722 "calcium-mediated
signaling" evidence=NAS] [GO:0043186 "P granule" evidence=ISO;ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISO;ISS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 RGD:708415 GO:GO:0005829 GO:GO:0006355
GO:GO:0003677 GO:GO:0019722 GO:GO:0003730 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488
CTD:23589 eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
OMA:PDIFVHI OrthoDB:EOG4V4390 GO:GO:0043186 InterPro:IPR019844
GeneTree:ENSGT00390000000022 EMBL:AF115346 EMBL:BC071173
IPI:IPI00201548 RefSeq:NP_690003.1 UniGene:Rn.14584
ProteinModelPortal:Q9WU49 STRING:Q9WU49 PhosphoSite:Q9WU49
PRIDE:Q9WU49 Ensembl:ENSRNOT00000003514 GeneID:260416
KEGG:rno:260416 UCSC:RGD:708415 InParanoid:Q9WU49 NextBio:624378
Genevestigator:Q9WU49 GermOnline:ENSRNOG00000002610 Uniprot:Q9WU49
Length = 147
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 67/122 (54%), Positives = 78/122 (63%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRARDRSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HL 133
ITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV V I HL P H
Sbjct: 79 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHE 138
Query: 134 QW 135
W
Sbjct: 139 TW 140
>UNIPROTKB|E2R913 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:PDIFVHI
InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:AAEX03004556
Ensembl:ENSCAFT00000030174 Uniprot:E2R913
Length = 154
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 73/141 (51%), Positives = 86/141 (60%)
Query: 1 MSGSPLPFENKKPA--LSSPMLSPQEPHLHSNNTLS---LPSPIITRRTRTESISNRALQ 55
MS P P + P S +L Q+ S + L +PSP+ TRRTRT S + RA Q
Sbjct: 8 MSSEPPP-PPQPPTHQTSVGLLDTQQSRDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQ 66
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFE 115
PV G K FCRSKGHGFITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK E
Sbjct: 67 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNE 126
Query: 116 KNQAVHVEIVHLTPEV-HLQW 135
K QAV V I HL P H W
Sbjct: 127 KLQAVEVVITHLAPGTKHETW 147
>UNIPROTKB|Q9Y2V2 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0019902 "phosphatase binding" evidence=NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] [GO:0043186 "P granule" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=TAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005829 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CH471112 GO:GO:0003730 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488
GO:GO:0019902 EMBL:AF115345 EMBL:AK311777 EMBL:BC003366
EMBL:BC108283 IPI:IPI00304409 RefSeq:NP_001035941.1
RefSeq:NP_055131.2 UniGene:Hs.632184 PDB:3AQQ PDBsum:3AQQ
ProteinModelPortal:Q9Y2V2 SMR:Q9Y2V2 IntAct:Q9Y2V2
MINT:MINT-1432836 STRING:Q9Y2V2 PhosphoSite:Q9Y2V2 DMDM:41016932
PaxDb:Q9Y2V2 PeptideAtlas:Q9Y2V2 PRIDE:Q9Y2V2 DNASU:23589
Ensembl:ENST00000311052 Ensembl:ENST00000396593
Ensembl:ENST00000561530 Ensembl:ENST00000567554 GeneID:23589
KEGG:hsa:23589 UCSC:uc002czh.1 CTD:23589 GeneCards:GC16M008946
HGNC:HGNC:17150 HPA:HPA051911 neXtProt:NX_Q9Y2V2 PharmGKB:PA38440
eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
InParanoid:Q9Y2V2 OMA:PDIFVHI OrthoDB:EOG4V4390 PhylomeDB:Q9Y2V2
GenomeRNAi:23589 NextBio:46226 Bgee:Q9Y2V2 CleanEx:HS_CARHSP1
Genevestigator:Q9Y2V2 GermOnline:ENSG00000153048 GO:GO:0043186
InterPro:IPR019844 Uniprot:Q9Y2V2
Length = 147
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 67/122 (54%), Positives = 78/122 (63%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HL 133
ITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV V I HL P H
Sbjct: 79 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHE 138
Query: 134 QW 135
W
Sbjct: 139 TW 140
>UNIPROTKB|E1C8P8 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:23589 OMA:PDIFVHI
InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:AADN02023448
EMBL:AADN02023449 EMBL:AADN02023450 EMBL:AADN02023451
EMBL:AADN02023452 EMBL:AADN02023453 EMBL:AADN02023454
IPI:IPI00591072 RefSeq:XP_414938.2 ProteinModelPortal:E1C8P8
PRIDE:E1C8P8 Ensembl:ENSGALT00000011834 GeneID:416640
KEGG:gga:416640 NextBio:20820068 Uniprot:E1C8P8
Length = 152
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 71/131 (54%), Positives = 84/131 (64%)
Query: 6 LPFENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKE 65
LP EN++ SP SP +L +PSP+ TRRTRT S + RA + P+ G K
Sbjct: 25 LP-ENRRTRDRSP--SPMRGYL-------IPSPLPTRRTRTYSATVRASEGPIYKGVCKC 74
Query: 66 FCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIV 125
FCRSKGHGFI+P G P +FVHISDIEG YVP+ GDEV Y++C IPPK EK QAV V I
Sbjct: 75 FCRSKGHGFISPADGGPDIFVHISDIEGEYVPVSGDEVTYKVCTIPPKNEKLQAVEVVIT 134
Query: 126 HLTPEV-HLQW 135
HL P H W
Sbjct: 135 HLAPGTKHETW 145
>UNIPROTKB|H3BNU9 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BNU9
Ensembl:ENST00000565287 Bgee:H3BNU9 Uniprot:H3BNU9
Length = 131
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 64/113 (56%), Positives = 75/113 (66%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHL 127
ITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV V I HL
Sbjct: 79 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHL 131
>UNIPROTKB|Q9Y534 [details] [associations]
symbol:CSDC2 "Cold shock domain-containing protein C2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0006398 "histone mRNA 3'-end
processing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 GO:GO:0003723 EMBL:AL023553 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000059524
HOVERGEN:HBG050947 InterPro:IPR019844 GO:GO:0006398 EMBL:AB027011
EMBL:CR456457 EMBL:AL834417 EMBL:BC067113 IPI:IPI00171508
RefSeq:NP_055275.1 UniGene:Hs.310893 ProteinModelPortal:Q9Y534
SMR:Q9Y534 IntAct:Q9Y534 MINT:MINT-6946101 STRING:Q9Y534
PhosphoSite:Q9Y534 DMDM:32129852 PaxDb:Q9Y534 PRIDE:Q9Y534
DNASU:27254 Ensembl:ENST00000306149 GeneID:27254 KEGG:hsa:27254
UCSC:uc003bak.1 CTD:27254 GeneCards:GC22P041956 HGNC:HGNC:30359
HPA:HPA003073 neXtProt:NX_Q9Y534 PharmGKB:PA142672071
eggNOG:NOG240305 InParanoid:Q9Y534 OMA:CHVSDIE OrthoDB:EOG4WM4W3
PhylomeDB:Q9Y534 GenomeRNAi:27254 NextBio:50194 Bgee:Q9Y534
CleanEx:HS_CSDC2 Genevestigator:Q9Y534 GermOnline:ENSG00000172346
Uniprot:Q9Y534
Length = 153
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/102 (56%), Positives = 72/102 (70%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETW 146
>UNIPROTKB|F1SRD7 [details] [associations]
symbol:CSDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 OMA:CHVSDIE EMBL:CU633382
RefSeq:NP_001230349.1 UniGene:Ssc.3207 Ensembl:ENSSSCT00000000068
GeneID:100153407 KEGG:ssc:100153407 Uniprot:F1SRD7
Length = 153
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/102 (56%), Positives = 72/102 (70%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 105 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETW 146
>MGI|MGI:2146027 [details] [associations]
symbol:Csdc2 "cold shock domain containing C2, RNA binding"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 MGI:MGI:2146027 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
OrthoDB:EOG4WM4W3 EMBL:AK028916 EMBL:AK132493 EMBL:AC102103
EMBL:BC016109 IPI:IPI00130363 IPI:IPI00954670 RefSeq:NP_663448.2
UniGene:Mm.22524 ProteinModelPortal:Q91YQ3 STRING:Q91YQ3
PhosphoSite:Q91YQ3 PaxDb:Q91YQ3 PRIDE:Q91YQ3
Ensembl:ENSMUST00000038757 GeneID:105859 KEGG:mmu:105859
InParanoid:Q91YQ3 NextBio:357940 CleanEx:MM_CSDC2
Genevestigator:Q91YQ3 GermOnline:ENSMUSG00000042109 Uniprot:Q91YQ3
Length = 154
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/102 (56%), Positives = 72/102 (70%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETW 147
>RGD|628780 [details] [associations]
symbol:Csdc2 "cold shock domain containing C2, RNA binding"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 RGD:628780 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
OrthoDB:EOG4WM4W3 EMBL:X89962 IPI:IPI00209017 PIR:JC4588
RefSeq:NP_001164013.1 UniGene:Rn.1171 ProteinModelPortal:Q63430
STRING:Q63430 Ensembl:ENSRNOT00000007091 GeneID:266600
KEGG:rno:266600 UCSC:RGD:628780 InParanoid:Q63430 NextBio:624402
Genevestigator:Q63430 GermOnline:ENSRNOG00000005332 Uniprot:Q63430
Length = 154
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/102 (56%), Positives = 72/102 (70%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 106 YVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETW 147
>UNIPROTKB|F1NMV8 [details] [associations]
symbol:CSDC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000000022 OMA:CHVSDIE EMBL:AADN02006068
IPI:IPI00575708 Ensembl:ENSGALT00000000064 Uniprot:F1NMV8
Length = 162
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 57/102 (55%), Positives = 73/102 (71%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC 94
LPSP+ T+RTRT S + RA P+ G K+F RS+GHGFITP++G +FVH+SDIEG
Sbjct: 54 LPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGE 113
Query: 95 YVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
YVP+ GDEV Y++CPIPPK +K QAV V + +L P H W
Sbjct: 114 YVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETW 155
>UNIPROTKB|Q08E16 [details] [associations]
symbol:CSDC2 "Cold shock domain containing C2, RNA binding"
species:9913 "Bos taurus" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
OrthoDB:EOG4WM4W3 EMBL:DAAA02014733 EMBL:BC123465 IPI:IPI00708950
RefSeq:NP_001070345.1 UniGene:Bt.64706 Ensembl:ENSBTAT00000005226
GeneID:525364 KEGG:bta:525364 InParanoid:Q08E16 NextBio:20874148
Uniprot:Q08E16
Length = 153
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 59/108 (54%), Positives = 75/108 (69%)
Query: 29 SNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHI 88
S ++ LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+
Sbjct: 39 SVSSRDLPSPLPTKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHV 98
Query: 89 SDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
SDIEG YVP+ GDEV Y++CPIPPK +K QAV V + L P H W
Sbjct: 99 SDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTQLAPHTPHETW 146
>ZFIN|ZDB-GENE-040426-1479 [details] [associations]
symbol:carhsp1 "calcium regulated heat stable
protein 1" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 ZFIN:ZDB-GENE-040426-1479
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 CTD:23589 eggNOG:NOG239041 HOGENOM:HOG000059524
HOVERGEN:HBG050947 OMA:PDIFVHI OrthoDB:EOG4V4390 InterPro:IPR019844
GeneTree:ENSGT00390000000022 EMBL:CU464204 EMBL:BX936335
EMBL:BC056576 IPI:IPI00490441 RefSeq:NP_956856.1 UniGene:Dr.78003
Ensembl:ENSDART00000075100 Ensembl:ENSDART00000151437 GeneID:393534
KEGG:dre:393534 InParanoid:Q6PHF1 NextBio:20814555 Uniprot:Q6PHF1
Length = 155
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 71/141 (50%), Positives = 85/141 (60%)
Query: 7 PFENKKPALS-SPMLSPQEPHLHS--NNTLS--------LPSPIITRRTRTESISNRALQ 55
P ++ P LS S +SP HL + N S +PSP+ TRR RT S + RA +
Sbjct: 8 PVKSTTPPLSPSSPVSPSALHLPTCRNRARSPSPMRSHLIPSPLPTRRNRTCSAAARAAE 67
Query: 56 NPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFE 115
PV +G K F RSKGHGFITP G +FVHISDI+G YVP+ GDEV Y++C IPPK E
Sbjct: 68 GPVFSGVCKCFSRSKGHGFITPSDGGNDIFVHISDIDGEYVPVEGDEVCYKICSIPPKHE 127
Query: 116 KNQAVHVEIVHLTPEV-HLQW 135
K QAV V I HL P H W
Sbjct: 128 KIQAVEVTITHLAPGTKHETW 148
>UNIPROTKB|H3BPY5 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BPY5
Ensembl:ENST00000567908 Bgee:H3BPY5 Uniprot:H3BPY5
Length = 126
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 61/108 (56%), Positives = 72/108 (66%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHV 122
ITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV V
Sbjct: 79 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEV 126
>UNIPROTKB|H3BUY4 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BUY4
Ensembl:ENST00000570125 Bgee:H3BUY4 Uniprot:H3BUY4
Length = 124
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 60/106 (56%), Positives = 71/106 (66%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAV 120
ITP G P +F+HISD+EG YVP+ GDEV Y++C IPPK EK QAV
Sbjct: 79 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAV 124
>ZFIN|ZDB-GENE-110419-1 [details] [associations]
symbol:csdc2b "cold shock domain containing C2, RNA
binding b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 ZFIN:ZDB-GENE-110419-1 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:CABZ01117704
EMBL:CABZ01117705 EMBL:CABZ01117706 IPI:IPI00863650
Ensembl:ENSDART00000099055 Bgee:F1QHR6 Uniprot:F1QHR6
Length = 162
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 65/127 (51%), Positives = 76/127 (59%)
Query: 13 PALSSPMLSP---QEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRS 69
PAL SP +P Q P + LPSP+ T+RTRT S + RA PV G K+F RS
Sbjct: 29 PALRSPRSAPLSLQFPFRSALPPKELPSPLPTKRTRTYSATVRANAGPVFKGVCKDFSRS 88
Query: 70 KGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP 129
+GHGFI P G +F HISDIEG YVP+ GDEV Y++C IPPK K QAV V I HL
Sbjct: 89 QGHGFIKPAHGGDDIFFHISDIEGEYVPVEGDEVTYKVCLIPPKNVKVQAVEVTITHLKA 148
Query: 130 EV-HLQW 135
H W
Sbjct: 149 GAKHETW 155
>UNIPROTKB|E2RRI6 [details] [associations]
symbol:CSDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000000022
OMA:CHVSDIE EMBL:AAEX03007296 Ensembl:ENSCAFT00000001614
Uniprot:E2RRI6
Length = 159
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 53/103 (51%), Positives = 70/103 (67%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD-IEG 93
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+SD I+G
Sbjct: 50 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDNIQG 109
Query: 94 CYVPLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTPEV-HLQW 135
Y+P+ +V Y++CPIPPK +K QAV V + L P H W
Sbjct: 110 EYLPMESHQVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETW 152
>ZFIN|ZDB-GENE-040718-442 [details] [associations]
symbol:csdc2a "cold shock domain containing C2, RNA
binding a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 ZFIN:ZDB-GENE-040718-442 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
eggNOG:NOG240305 OrthoDB:EOG4WM4W3 EMBL:BC076447 IPI:IPI00486145
RefSeq:NP_001002690.1 UniGene:Dr.87298 ProteinModelPortal:Q6DGA4
GeneID:436963 KEGG:dre:436963 CTD:436963 InParanoid:Q6DGA4
NextBio:20831386 Uniprot:Q6DGA4
Length = 153
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 56/100 (56%), Positives = 66/100 (66%)
Query: 37 SPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYV 96
SP+ T+RTRT S S RA PV G K F RS+GHGFI P G +FVHISDIEG YV
Sbjct: 47 SPLPTKRTRTYSASVRAKSGPVYKGICKNFSRSQGHGFIRPSHGGEDIFVHISDIEGEYV 106
Query: 97 PLPGDEVKYRLCPIPPKFEKNQAVHVEIVHLTP-EVHLQW 135
P+ GDEV Y++CP+PPK K QAV V I +L+ H W
Sbjct: 107 PMEGDEVTYKVCPVPPKNIKFQAVEVVITNLSSGRKHETW 146
>UNIPROTKB|H3BSW7 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BSW7
Ensembl:ENST00000568117 Bgee:H3BSW7 Uniprot:H3BSW7
Length = 112
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 51/94 (54%), Positives = 62/94 (65%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLC 108
ITP G P +F+HISD+EG YVP+ GDEV Y++C
Sbjct: 79 ITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMC 112
>UNIPROTKB|I3L3X8 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 EMBL:AC022167 ProteinModelPortal:I3L3X8 SMR:I3L3X8
PRIDE:I3L3X8 Ensembl:ENST00000562843 Bgee:I3L3X8 Uniprot:I3L3X8
Length = 94
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGF 74
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FCRSKGHGF
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGF 78
Query: 75 ITPDSGEPAVFVHISD 90
ITP G P +F+HIS+
Sbjct: 79 ITPADGGPDIFLHISE 94
>UNIPROTKB|H7C4E7 [details] [associations]
symbol:CSDC2 "Cold shock domain-containing protein C2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 EMBL:AL023553 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HGNC:HGNC:30359 EMBL:Z83840 Ensembl:ENST00000460790
Bgee:H7C4E7 Uniprot:H7C4E7
Length = 151
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 35 LPSPIITRRTRTESISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 90
LPSP+ T+RTRT S + RA PV G K+F RS+GHGFITP++G +FVH+S+
Sbjct: 28 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSE 83
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TGK+ F SKG+GFITPD G +FVH S I EG GD V++ +
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAI 61
>TIGR_CMR|SPO_1275 [details] [associations]
symbol:SPO_1275 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:KMRGKVS HOGENOM:HOG000070673
RefSeq:YP_166520.1 ProteinModelPortal:Q5LTY5 SMR:Q5LTY5
GeneID:3194159 KEGG:sil:SPO1275 PATRIC:23375855
ProtClustDB:CLSK759123 Uniprot:Q5LTY5
Length = 68
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F +KG+GFI PD G VFVHIS +E
Sbjct: 3 TGTVKWFNATKGYGFIAPDDGGKDVFVHISAVE 35
>UNIPROTKB|P0A9Y6 [details] [associations]
symbol:cspC species:83333 "Escherichia coli K-12"
[GO:0001072 "RNA binding transcription antitermination factor
activity" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
Genevestigator:P0A9Y6 Uniprot:P0A9Y6
Length = 69
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G++K F SKG GFITP G VFVH S I+G
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFSAIQG 38
>TIGR_CMR|SPO_0437 [details] [associations]
symbol:SPO_0437 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_165700.1 ProteinModelPortal:Q5LWA5 SMR:Q5LWA5
GeneID:3192720 KEGG:sil:SPO0437 PATRIC:23374139 OMA:VEFAIHR
ProtClustDB:CLSK747481 Uniprot:Q5LWA5
Length = 68
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCP 109
TG +K F +KG GFI P+ G VFVHIS +E G +V Y L P
Sbjct: 3 TGTVKWFNTTKGFGFIAPEEGGKDVFVHISAVERSGLTGLADNQKVSYELKP 54
>UNIPROTKB|P0A972 [details] [associations]
symbol:cspE species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
binding transcription antitermination factor activity"
evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
transcription, termination" evidence=IDA] [GO:0031564
"transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
GO:GO:0008143 Uniprot:P0A972
Length = 69
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F SKG GFITP+ G VFVH S I+ G G V++ +
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEI 54
>UNIPROTKB|P0A9X9 [details] [associations]
symbol:cspA species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
GO:GO:0060567 Uniprot:P0A9X9
Length = 70
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKYRL 107
TG +K F KG GFITPD G VFVH S I+ Y L G +V + +
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI 55
>TIGR_CMR|CPS_2895 [details] [associations]
symbol:CPS_2895 "cold shock-like protein CspD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006950 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:QVVRFDV TIGRFAMs:TIGR02381 RefSeq:YP_269596.1
ProteinModelPortal:Q480C3 SMR:Q480C3 STRING:Q480C3 GeneID:3518797
KEGG:cps:CPS_2895 PATRIC:21468815
BioCyc:CPSY167879:GI48-2945-MONOMER Uniprot:Q480C3
Length = 72
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/49 (44%), Positives = 26/49 (53%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRL 107
G +K F +KG GFI PDSG +F H S IE G G +V Y L
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTIEMDGYRTLKAGQDVDYEL 52
>UNIPROTKB|P0A978 [details] [associations]
symbol:cspG species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
Uniprot:P0A978
Length = 70
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITPD G VFVH + I+
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQ 38
>TIGR_CMR|CPS_0718 [details] [associations]
symbol:CPS_0718 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267468.1
ProteinModelPortal:Q488P6 SMR:Q488P6 GeneID:3518546
KEGG:cps:CPS_0718 PATRIC:21464753 OMA:QKGPCAN
ProtClustDB:CLSK768090 BioCyc:CPSY167879:GI48-805-MONOMER
Uniprot:Q488P6
Length = 68
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLP-GDEVKYRL 107
G +K F KG GFITP+ G +FVH S+I+ G Y L G V+Y +
Sbjct: 4 GIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGEYATLADGQTVEYEV 53
>TIGR_CMR|CPS_0737 [details] [associations]
symbol:CPS_0737 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267487.1
ProteinModelPortal:Q488M7 SMR:Q488M7 GeneID:3518930
KEGG:cps:CPS_0737 PATRIC:21464787 OMA:PQAENVE
ProtClustDB:CLSK742412 BioCyc:CPSY167879:GI48-824-MONOMER
Uniprot:Q488M7
Length = 69
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
TGK+K F +KG GFI ++G P VFVH S I G
Sbjct: 6 TGKVKFFNETKGFGFIEQENG-PDVFVHFSAISG 38
>UNIPROTKB|H3BTK3 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA]
GO:GO:0005737 HGNC:HGNC:17150 EMBL:AC022167 PRIDE:H3BTK3
Ensembl:ENST00000569398 Bgee:H3BTK3 Uniprot:H3BTK3
Length = 71
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESISNRALQNPVETGKIKEFC 67
L +P + P N + PSP+ TRRTRT S + RA Q PV G K FC
Sbjct: 21 LDTPRSRERSPSPLRGNVV--PSPLPTRRTRTFSATVRASQGPVYKGVCKCFC 71
>TIGR_CMR|BA_5115 [details] [associations]
symbol:BA_5115 "cold shock protein CspD" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 RefSeq:NP_847301.1
RefSeq:YP_021768.1 RefSeq:YP_030998.1 ProteinModelPortal:Q81K90
SMR:Q81K90 DNASU:1084426 EnsemblBacteria:EBBACT00000008459
EnsemblBacteria:EBBACT00000015452 EnsemblBacteria:EBBACT00000020851
GeneID:1084426 GeneID:2816754 GeneID:2848947 KEGG:ban:BA_5115
KEGG:bar:GBAA_5115 KEGG:bat:BAS4754 HOGENOM:HOG000070673
OMA:IQSNNFK ProtClustDB:CLSK917532
BioCyc:BANT260799:GJAJ-4808-MONOMER
BioCyc:BANT261594:GJ7F-4967-MONOMER Uniprot:Q81K90
Length = 66
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 58 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPLP-GDEVKYRL 107
++TGK+K F KG GFI + G+ VFVH S I+G + L G EV + +
Sbjct: 1 MQTGKVKWFNSEKGFGFIEVEGGDD-VFVHFSAIQGDGFKTLEEGQEVSFEI 51
>UNIPROTKB|P63848 [details] [associations]
symbol:cspA "Probable cold shock protein A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0040007 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842583 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 PIR:A70564
RefSeq:NP_218165.1 RefSeq:NP_338297.1 RefSeq:YP_006517135.1
ProteinModelPortal:P63848 SMR:P63848 PRIDE:P63848
EnsemblBacteria:EBMYCT00000001507 EnsemblBacteria:EBMYCT00000071867
GeneID:13317256 GeneID:885837 GeneID:922742 KEGG:mtc:MT3750.1
KEGG:mtu:Rv3648c KEGG:mtv:RVBD_3648c PATRIC:18130006
TubercuList:Rv3648c OMA:AWEDEEV ProtClustDB:CLSK792621
Uniprot:P63848
Length = 67
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
G +K F KG GFI P+ G VFVH ++I+G
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG 36
>UNIPROTKB|Q9KL16 [details] [associations]
symbol:cspV "Cold shock protein CspV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
TG +K F +KG GF+T D+G VFVH + I EG G V +
Sbjct: 6 TGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSF 53
>TIGR_CMR|VC_A0933 [details] [associations]
symbol:VC_A0933 "cold shock domain family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
TG +K F +KG GF+T D+G VFVH + I EG G V +
Sbjct: 6 TGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSF 53
>UNIPROTKB|P0A986 [details] [associations]
symbol:cspI species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0009409 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 OMA:IQSNNFK
PIR:C64910 RefSeq:NP_416070.1 RefSeq:YP_489816.1
ProteinModelPortal:P0A986 SMR:P0A986 DIP:DIP-48195N IntAct:P0A986
MINT:MINT-1309031 PRIDE:P0A986 EnsemblBacteria:EBESCT00000000769
EnsemblBacteria:EBESCT00000016713 GeneID:12931246 GeneID:946099
KEGG:ecj:Y75_p1528 KEGG:eco:b1552 PATRIC:32118406 EchoBASE:EB3636
EcoGene:EG13877 ProtClustDB:CLSK891754 BioCyc:EcoCyc:G6825-MONOMER
BioCyc:ECOL316407:JW1544-MONOMER Genevestigator:P0A986
Uniprot:P0A986
Length = 70
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
TG +K F KG GFITP G VFVH S I+
Sbjct: 6 TGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQ 38
>UNIPROTKB|Q9KSW4 [details] [associations]
symbol:cspD "Cold shock-like protein CspD" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFI P+ + +F H S I+ G G +V Y++ P + +
Sbjct: 6 TGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPKGYHAS 65
Query: 118 QAVHVE 123
V +E
Sbjct: 66 CVVPIE 71
>TIGR_CMR|SO_1648 [details] [associations]
symbol:SO_1648 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000070674 HSSP:P41016
RefSeq:NP_717259.2 ProteinModelPortal:Q8EGF6 GeneID:1169442
PATRIC:23522932 OMA:FEVENGQ ProtClustDB:CLSK912356 Uniprot:Q8EGF6
Length = 69
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
TG +K F KG GFI+PD+G FVH I +G G +V Y +
Sbjct: 5 TGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDGFKTLAEGQKVSYEV 54
>TIGR_CMR|SPO_3625 [details] [associations]
symbol:SPO_3625 "cold shock protein CspA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HOGENOM:HOG000070673 RefSeq:YP_168819.1 ProteinModelPortal:Q5LMD9
SMR:Q5LMD9 GeneID:3195668 KEGG:sil:SPO3625 PATRIC:23380729
OMA:TMDGFKT Uniprot:Q5LMD9
Length = 68
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 61 GKIKEFCRSKGHGFITPDSGEPAVFVHISDIE 92
G +K F KG GFI P+ G VFVHIS +E
Sbjct: 4 GTVKWFNSQKGFGFIAPEQGSKDVFVHISALE 35
>TIGR_CMR|VC_1142 [details] [associations]
symbol:VC_1142 "cold shock-like protein CspD" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIE--GCYVPLPGDEVKYRLCPIPPKFEKN 117
TG +K F +KG GFI P+ + +F H S I+ G G +V Y++ P + +
Sbjct: 6 TGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPKGYHAS 65
Query: 118 QAVHVE 123
V +E
Sbjct: 66 CVVPIE 71
>UNIPROTKB|Q9KMY2 [details] [associations]
symbol:VC_A0184 "Cold shock DNA-binding domain protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HSSP:P41016 PIR:A82489
RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2 SMR:Q9KMY2
DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184 PATRIC:20084941
OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ PV TG +K F +KG GFI ++G P VF H S I+G
Sbjct: 1 MSTPV-TGTVKWFNETKGFGFIKQENG-PDVFAHFSAIQG 38
>UNIPROTKB|Q9KN00 [details] [associations]
symbol:cspA "Cold shock-like protein CspA" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
TG +K F +KG GFI+ D+G VFVH I EG G V +
Sbjct: 6 TGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSF 53
>TIGR_CMR|VC_A0166 [details] [associations]
symbol:VC_A0166 "cold shock transcriptional regulator
CspA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 60 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKY 105
TG +K F +KG GFI+ D+G VFVH I EG G V +
Sbjct: 6 TGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSF 53
>TIGR_CMR|VC_A0184 [details] [associations]
symbol:VC_A0184 "cold shock DNA-binding domain protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HSSP:P41016 PIR:A82489 RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2
SMR:Q9KMY2 DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184
PATRIC:20084941 OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 54 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEG 93
+ PV TG +K F +KG GFI ++G P VF H S I+G
Sbjct: 1 MSTPV-TGTVKWFNETKGFGFIKQENG-PDVFAHFSAIQG 38
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 140 140 0.00091 102 3 11 23 0.36 32
30 0.46 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 589 (63 KB)
Total size of DFA: 147 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.08u 0.08s 16.16t Elapsed: 00:00:09
Total cpu time: 16.08u 0.08s 16.16t Elapsed: 00:00:09
Start: Thu Aug 15 12:44:30 2013 End: Thu Aug 15 12:44:39 2013