RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3654
         (140 letters)



>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima
           [TaxId: 2336]}
          Length = 66

 Score = 59.0 bits (143), Expect = 2e-13
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 60  TGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRLCPIPPKFEKN 117
            GK+K F   KG+GFIT D G   VFVH S I  EG      G  V++ +       +  
Sbjct: 2   RGKVKWFDSKKGYGFITKDEGGD-VFVHWSAIEMEGFKTLKEGQVVEFEIQEGK---KGP 57

Query: 118 QAVHVEIV 125
           QA HV++V
Sbjct: 58  QAAHVKVV 65


>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli
           [TaxId: 562]}
          Length = 69

 Score = 58.6 bits (142), Expect = 2e-13
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 60  TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGC-YVPL-PGDEVKYRLCPIPPKFEKN 117
           TG +K F   KG GFITPD G   VFVH S I+   Y  L  G +V + +       +  
Sbjct: 5   TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGA---KGP 61

Query: 118 QAVHV 122
            A +V
Sbjct: 62  AAGNV 66


>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 79

 Score = 57.1 bits (138), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 60  TGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPL------PGDEVKYRLCPIPPK 113
            G +K F    G+GFI  +  +  VFVH + I+             G+ V++ +      
Sbjct: 10  LGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-- 67

Query: 114 FEKNQAVHV 122
            +  +A +V
Sbjct: 68  -KGAEAANV 75


>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 54.9 bits (132), Expect = 1e-11
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 59  ETGKIKEFCRSKGHGFITPDSGEPAVFVHIS-DIEGCYVPLPGDEVKYRLCPIPPKFEKN 117
           ETG I++      +GFI     +  +F H S           GD+V++ +     +  K 
Sbjct: 19  ETGVIEKL--LTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSS-DRRTGKP 75

Query: 118 QAVHVEIV 125
            AV +  +
Sbjct: 76  IAVKLVKI 83


>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
           caldolyticus [TaxId: 1394]}
          Length = 66

 Score = 52.1 bits (125), Expect = 7e-11
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 59  ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDI--EGCYVPLPGDEVKYRL 107
           + GK+K F   KG+GFI  + G   VFVH + I  EG      G EV + +
Sbjct: 2   QRGKVKWFNNEKGYGFIEVEGGSD-VFVHFTAIQGEGFKTLEEGQEVSFEI 51


>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 28.1 bits (63), Expect = 0.100
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 55  QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDIEGCYVPLPGDEVKYRLCPIPPKF 114
           Q P   G +K     KG GF+  D+ +   F+    ++     + GD +      I  + 
Sbjct: 15  QTPRAEGVVK--ATEKGFGFLEVDAQKS-YFIPPPQMKKV---MHGDRIIAV---IHSEK 65

Query: 115 EKNQAVHVEIV 125
           E+  A   E+V
Sbjct: 66  ERESAEPEELV 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 543,995
Number of extensions: 24214
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 9
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.7 bits)