BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3655
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 180 bits (456), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 92/125 (73%), Gaps = 30/125 (24%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90
GDN+YEW STILGPPGSVYEGGVFFLDI F+PEYPFKPPKVTFRTRIYHCNINSQGVICL
Sbjct: 74 GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICL 133
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 150
DILKDNW SPALTISKVLLSICSLLTDCNPA
Sbjct: 134 DILKDNW------------------------------SPALTISKVLLSICSLLTDCNPA 163
Query: 151 DPLVA 155
DPLV
Sbjct: 164 DPLVG 168
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 102/147 (69%), Gaps = 34/147 (23%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90
GDN+YEW STILGPPGSVYEGGVFFLDI FSP+YPFKPPKVTFRTRIYHCNINSQGVICL
Sbjct: 29 GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICL 88
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 150
DILKDNW SPALTISKVLLSICSLLTDCNPA
Sbjct: 89 DILKDNW------------------------------SPALTISKVLLSICSLLTDCNPA 118
Query: 151 DPLVAKHSDTVSTKQGRTRSDVQTMDQ 177
DPLV +++T+ R++ M +
Sbjct: 119 DPLVG----SIATQYMTNRAEHDRMAR 141
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 89/153 (58%), Gaps = 32/153 (20%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GP S Y GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 26 VGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSIC 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+D W SPALTISKVLLSI SLLTD NP
Sbjct: 86 LDILRDQW------------------------------SPALTISKVLLSISSLLTDPNP 115
Query: 150 ADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHA 182
DPLV + + T R+R ++ + T +A
Sbjct: 116 DDPLVPEIAHVYKTD--RSRYELSAREWTRKYA 146
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 83/138 (60%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GPP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 29 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 88
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 89 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 118
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + R
Sbjct: 119 DDPLVPEIARIYKTDRER 136
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 89/153 (58%), Gaps = 32/153 (20%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y GGVFFL+IHF +YPFKPPKV F T+IYH NINSQG IC
Sbjct: 46 VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAIC 105
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDILKD W SPALTISKVLLSI SLLTD NP
Sbjct: 106 LDILKDQW------------------------------SPALTISKVLLSISSLLTDPNP 135
Query: 150 ADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHA 182
DPLV + + K R R D + + +A
Sbjct: 136 DDPLVPEIAHLY--KSDRMRYDQTAREWSQKYA 166
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 86/144 (59%), Gaps = 30/144 (20%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+LY W ++I+GP S Y GGVFFL IHF +YPFKPPK++F T+IYH NIN+ G IC
Sbjct: 27 VGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNIC 86
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDILKD W SPALT+SKVLLSICSLLTD NP
Sbjct: 87 LDILKDQW------------------------------SPALTLSKVLLSICSLLTDANP 116
Query: 150 ADPLVAKHSDTVSTKQGRTRSDVQ 173
DPLV + + T + + + +
Sbjct: 117 DDPLVPEIAHIYKTDRPKYEATAR 140
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 78/125 (62%), Gaps = 30/125 (24%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GPP S Y+GGVFFL +HF +YPFKPPK+ F T+IYH NINS G IC
Sbjct: 44 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIC 103
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALT+SKVLLSICSLL D NP
Sbjct: 104 LDILRSQWS------------------------------PALTVSKVLLSICSLLCDPNP 133
Query: 150 ADPLV 154
DPLV
Sbjct: 134 DDPLV 138
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 78/125 (62%), Gaps = 30/125 (24%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GPP S Y+GGVFFL +HF +YPFKPPK+ F T+IYH NINS G IC
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIC 91
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALT+SKVLLSICSLL D NP
Sbjct: 92 LDILRSQWS------------------------------PALTVSKVLLSICSLLCDPNP 121
Query: 150 ADPLV 154
DPLV
Sbjct: 122 DDPLV 126
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 78/125 (62%), Gaps = 30/125 (24%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GPP S Y+GGVFFL +HF +YPFKPPK+ F T+IYH NINS G IC
Sbjct: 28 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALT+SKVLLSICSLL D NP
Sbjct: 88 LDILRSQWS------------------------------PALTVSKVLLSICSLLCDPNP 117
Query: 150 ADPLV 154
DPLV
Sbjct: 118 DDPLV 122
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 95
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 96 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 125
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 126 DDPLVPEIARIYKTDRDK 143
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 95
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 96 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 125
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 126 DDPLVPEIARIYQTDREK 143
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 103
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 104 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 133
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 134 DDPLVPEIARIYKTDREK 151
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 86 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 115
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 116 DDPLVPEIARIYKTDREK 133
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 88 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 117
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 118 DDPLVPEIARIYKTDRDK 135
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 84
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 85 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 114
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 115 DDPLVPEIARIYKTDRDK 132
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 31 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 90
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 91 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 120
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 121 DDPLVPEIARIYKTDREK 138
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 88 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 117
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 118 DDPLVPEIARIYKTDREK 135
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 34 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 93
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ W SPALTISKVLLSICSLL D NP
Sbjct: 94 LDILRSQW------------------------------SPALTISKVLLSICSLLCDPNP 123
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 124 DDPLVPEIARIYKTDRDK 141
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 82/138 (59%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 88 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 117
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 118 DDPLVPEIARIYKTDREK 135
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 87/151 (57%), Gaps = 38/151 (25%)
Query: 12 ALCTRVVYSSLTFIS--PPS------IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPE 63
A+ + ++ L ++ PP+ +GD+++ W +TI+GP S Y+GGVFFL IHF +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 64 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDIL 123
YPFKPPKV F TRIYH NINS G I LDIL+ WS
Sbjct: 62 YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWS------------------------- 96
Query: 124 KDNWSPALTISKVLLSICSLLTDCNPADPLV 154
PALTISKVLLSICSLL D NP DPLV
Sbjct: 97 -----PALTISKVLLSICSLLCDPNPDDPLV 122
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 77/125 (61%), Gaps = 30/125 (24%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F T+IYH NINS G IC
Sbjct: 31 VGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSIC 90
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALT+SKVLLSICSLL D NP
Sbjct: 91 LDILRSQWS------------------------------PALTVSKVLLSICSLLCDPNP 120
Query: 150 ADPLV 154
DPLV
Sbjct: 121 DDPLV 125
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 81/138 (58%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ W PALTISKVLLSICSLL D NP
Sbjct: 88 LDILRSQW------------------------------GPALTISKVLLSICSLLCDPNP 117
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 118 DDPLVPEIARIYKTDREK 135
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 77/125 (61%), Gaps = 30/125 (24%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+L+ W +TI+GPP S Y+GGVFFL +HF +YPFKPPK+ F T+IYH NINS G I
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIK 91
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALT+SKVLLSICSLL D NP
Sbjct: 92 LDILRSQWS------------------------------PALTVSKVLLSICSLLCDPNP 121
Query: 150 ADPLV 154
DPLV
Sbjct: 122 DDPLV 126
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 81/138 (58%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LD L+ WS PALTISKVLLSICSLL D NP
Sbjct: 88 LDALRSQWS------------------------------PALTISKVLLSICSLLCDPNP 117
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 118 DDPLVPEIARIYKTDREK 135
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 81/138 (58%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +T +GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G IC
Sbjct: 28 VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 88 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 117
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 118 DDPLVPEIARIYKTDREK 135
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 81/138 (58%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G I
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 86 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 115
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 116 DDPLVPEIARIYKTDRDK 133
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 86/150 (57%), Gaps = 38/150 (25%)
Query: 12 ALCTRVVYSSLTFIS--PP------SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPE 63
A+ R + L I PP +GD+++ W +TI GP S Y+GG+FFLD+HF +
Sbjct: 3 AMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVD 62
Query: 64 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDIL 123
YPFK P+VTF T++YH NIN GVICLDILKD W
Sbjct: 63 YPFKAPRVTFMTKVYHPNINKNGVICLDILKDQW-------------------------- 96
Query: 124 KDNWSPALTISKVLLSICSLLTDCNPADPL 153
SPALT+S+VLLSI SLLTD NP+DPL
Sbjct: 97 ----SPALTLSRVLLSISSLLTDPNPSDPL 122
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 81/138 (58%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G I
Sbjct: 29 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 88
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 89 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 118
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 119 DDPLVPEIARIYKTDREK 136
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 81/138 (58%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G I
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIX 103
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ WS PALTISKVLLSICSLL D NP
Sbjct: 104 LDILRSQWS------------------------------PALTISKVLLSICSLLCDPNP 133
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 134 DDPLVPEIARIYKTDREK 151
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 80/138 (57%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS G I
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 84
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ W SPAL ISKVLLSICSLL D NP
Sbjct: 85 LDILRSQW------------------------------SPALKISKVLLSICSLLCDPNP 114
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 115 DDPLVPEIARIYKTDREK 132
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 80/138 (57%), Gaps = 30/138 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH INS G I
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSIS 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDI L+ WSPALTISKVLLSICSLL D NP
Sbjct: 86 LDI------------------------------LRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 150 ADPLVAKHSDTVSTKQGR 167
DPLV + + T + +
Sbjct: 116 DDPLVPEIARIYKTDREK 133
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 72/141 (51%), Gaps = 31/141 (21%)
Query: 17 VVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR 76
+S+ +S +G +++ W I GP G+ YEGG F LDI P+YP+ PPK+ F T+
Sbjct: 57 ATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTK 116
Query: 77 IYHCNINSQ-GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISK 135
I+H NI+SQ G ICLDILK W SPALTI
Sbjct: 117 IWHPNISSQTGAICLDILKHEW------------------------------SPALTIRT 146
Query: 136 VLLSICSLLTDCNPADPLVAK 156
LLSI ++L D P DP A+
Sbjct: 147 ALLSIQAMLADPVPTDPQDAE 167
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 66/125 (52%), Gaps = 31/125 (24%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ-GVICLD 91
N +EWV I GP G+ YEGG F L I +YP+ PPK+ F T+I+H NI+SQ G ICLD
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
+LK+ W SPALTI LLSI +LL+D P D
Sbjct: 111 VLKNEW------------------------------SPALTIRTALLSIQALLSDPQPDD 140
Query: 152 PLVAK 156
P A+
Sbjct: 141 PQDAE 145
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 36/140 (25%)
Query: 21 SLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHC 80
+L F+S +++ T LGPPG+ YEGG F +DI EYPFKPPK+ F T++YH
Sbjct: 22 TLEFVS----ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP 77
Query: 81 NINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI 140
NI+S G ICLDILK+ WSP +T+ L+S+
Sbjct: 78 NISSV-----------------------------TGAICLDILKNAWSPVITLKSALISL 108
Query: 141 CSLLTDCNPADPL---VAKH 157
+LL P DP VA+H
Sbjct: 109 QALLQSPEPNDPQDAEVAQH 128
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 77/163 (47%), Gaps = 38/163 (23%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
+L R++ + +S P G DNL + TI GP S YE G+F L+++ +Y
Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P + PKV F T+IYH NI+ G ICLD+LK NW
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNW--------------------------- 95
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAK-HSDTVSTKQG 166
SPAL I VLLSI +LL NP DPL D + +QG
Sbjct: 96 ---SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQG 135
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 73/152 (48%), Gaps = 42/152 (27%)
Query: 9 DPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKP 68
DP A T L F+S I + T LGPPG+ YEGG F +DI EYPFKP
Sbjct: 17 DPAAHIT------LEFVSESDI----HHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP 66
Query: 69 PKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWS 128
PK+ F T++YH NI+S G ICLDIL++ WS
Sbjct: 67 PKMQFDTKVYHPNISSV-----------------------------TGAICLDILRNAWS 97
Query: 129 PALTISKVLLSICSLLTDCNPADPL---VAKH 157
P +T+ L+S+ +LL P DP VA+H
Sbjct: 98 PVITLKSALISLQALLQSPEPNDPQDAEVAQH 129
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 77/163 (47%), Gaps = 38/163 (23%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
+L R++ + +S P G DNL + TI GP S YE G+F L+++ +Y
Sbjct: 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P + PKV F T+IYH NI+ G ICLD+LK NW
Sbjct: 65 PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNW--------------------------- 97
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAK-HSDTVSTKQG 166
SPAL I VLLSI +LL NP DPL D + +QG
Sbjct: 98 ---SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQG 137
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 76/163 (46%), Gaps = 38/163 (23%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
+L R++ + +S P G DNL + TI GP S YE G+F L+++ +Y
Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P + PKV F T+IYH NI+ G I LD+LK NW
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNW--------------------------- 95
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAK-HSDTVSTKQG 166
SPAL I VLLSI +LL NP DPL D + +QG
Sbjct: 96 ---SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQG 135
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 75/163 (46%), Gaps = 38/163 (23%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
+L R++ + +S P G DNL + TI GP S YE G+F L+++ +Y
Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P + PKV F T+IYH I+ G I LD+LK NW
Sbjct: 63 PMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNW--------------------------- 95
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAK-HSDTVSTKQG 166
SPAL I VLLSI +LL NP DPL D + +QG
Sbjct: 96 ---SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQG 135
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 66/131 (50%), Gaps = 33/131 (25%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+ +N + I GP G+ YEGG + L++ +YP +PPKV F T+IYH NI+ G IC
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRIC 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDILKD W SPAL I VLLSI +LL+ P
Sbjct: 86 LDILKDKW------------------------------SPALQIRTVLLSIQALLSSPEP 115
Query: 150 ADPL---VAKH 157
DPL VA+H
Sbjct: 116 DDPLDSKVAEH 126
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 66/131 (50%), Gaps = 33/131 (25%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+ +N + I GP G+ YEGG + L++ +YP +PPKV F T+IYH NI+ G IC
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRIC 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDILKD W SPAL I VLLSI +LL+ P
Sbjct: 86 LDILKDKW------------------------------SPALQIRTVLLSIQALLSSPEP 115
Query: 150 ADPL---VAKH 157
DPL VA+H
Sbjct: 116 DDPLDSKVAEH 126
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
L R++ + ++ P G N + I GP S +EGG F L++ EY
Sbjct: 3 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 62
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P PKV F T+IYH N++ G ICLDILKD W
Sbjct: 63 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW--------------------------- 95
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168
SPAL I VLLSI +LL+ NP DPL ++ T + +
Sbjct: 96 ---SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA 136
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
L R++ + ++ P G N + I GP S +EGG F L++ EY
Sbjct: 1 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P PKV F T+IYH N++ G ICLDILKD W
Sbjct: 61 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW--------------------------- 93
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168
SPAL I VLLSI +LL+ NP DPL ++ T + +
Sbjct: 94 ---SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA 134
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
L R++ + ++ P G N + I GP S +EGG F L++ EY
Sbjct: 6 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 65
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P PKV F T+IYH N++ G ICLDILKD W
Sbjct: 66 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW--------------------------- 98
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168
SPAL I VLLSI +LL+ NP DPL ++ T + +
Sbjct: 99 ---SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA 139
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
L R++ + ++ P G N + I GP S +EGG F L++ EY
Sbjct: 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P PKV F T+IYH N++ G ICLDILKD W
Sbjct: 65 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW--------------------------- 97
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168
SPAL I VLLSI +LL+ NP DPL ++ T + +
Sbjct: 98 ---SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA 138
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 12 ALCTRVVYSSLTFISPPSIG-------DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY 64
L R++ + ++ P G N + I GP S +EGG F L++ EY
Sbjct: 8 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 67
Query: 65 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILK 124
P PKV F T+IYH N++ G ICLDILKD W
Sbjct: 68 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW--------------------------- 100
Query: 125 DNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168
SPAL I VLLSI +LL+ NP DPL ++ T + +
Sbjct: 101 ---SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA 141
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 30/134 (22%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90
GDNL++WV+T+ GP +VYE + L + F +YP+KPP V F T +H N++ G ICL
Sbjct: 35 GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICL 94
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 150
DIL K+NW+ + + +LLS+ SLL + N A
Sbjct: 95 DIL------------------------------KENWTASYDVRTILLSLQSLLGEPNNA 124
Query: 151 DPLVAKHSDTVSTK 164
PL A+ +D S +
Sbjct: 125 SPLNAQAADMWSNQ 138
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVI 88
+ +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S G I
Sbjct: 85 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
Query: 89 CLDILKDNWSPALT 102
CLDILKD W+ A+T
Sbjct: 145 CLDILKDQWAAAMT 158
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 31/134 (23%)
Query: 27 PPSI-----GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCN 81
PP I D + + + ILG + YE GVF L++ YPF+PP++ F T IYH N
Sbjct: 21 PPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN 80
Query: 82 INSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSIC 141
I+S G ICLD+LK L P K W P+L I+ VL SI
Sbjct: 81 IDSAGRICLDVLK------LPP--------------------KGAWRPSLNIATVLTSIQ 114
Query: 142 SLLTDCNPADPLVA 155
L+++ NP DPL+A
Sbjct: 115 LLMSEPNPDDPLMA 128
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVI 88
+ +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S G I
Sbjct: 49 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
Query: 89 CLDILKDNWSPALT 102
CLDILKD W+ A+T
Sbjct: 109 CLDILKDQWAAAMT 122
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 30/121 (24%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+N+ +W + I GP G+ +E G F L I FS EYP KPP V F ++++H N+ + G ICLD
Sbjct: 31 NNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLD 90
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
IL+ + WSP +S +L SI SLL + NP
Sbjct: 91 ILQ------------------------------NRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 152 P 152
P
Sbjct: 121 P 121
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVI 88
+ +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S G I
Sbjct: 34 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
Query: 89 CLDILKDNWSPALT 102
CLDILKD W+ A+T
Sbjct: 94 CLDILKDQWAAAMT 107
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVI 88
+ +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S G I
Sbjct: 33 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
Query: 89 CLDILKDNWSPALT 102
CLDILKD W+ A+T
Sbjct: 93 CLDILKDQWAAAMT 106
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVI 88
+ +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S G I
Sbjct: 36 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
Query: 89 CLDILKDNWSPALT 102
CLDILKD W+ A+T
Sbjct: 96 CLDILKDQWAAAMT 109
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I+ P Y+ G F ++I+F EYPFKPPK+TF+T+IYH NI+ +G +CL +
Sbjct: 31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
I +NW PA +V+ S+ +L+ D P P
Sbjct: 90 -----------------------------ISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 153 LVAKHSDTVSTKQGR 167
L A ++ S + +
Sbjct: 121 LRADLAEEYSKDRKK 135
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I+ P Y+ G F ++I+F EYPFKPPK+TF+T+IYH NI+ +G +CL +
Sbjct: 33 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
I +NW PA +V+ S+ +L+ D P P
Sbjct: 92 -----------------------------ISAENWKPATKTDQVIQSLIALVNDPQPEHP 122
Query: 153 LVAKHSDTVSTKQGR 167
L A ++ S + +
Sbjct: 123 LRADLAEEYSKDRKK 137
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 35/139 (25%)
Query: 19 YSSLTFISPPSIG-----DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTF 73
+ + +PP + DN+ W + I+GP + YE G F L + F EYP KPP V F
Sbjct: 13 FKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKF 72
Query: 74 RTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTI 133
+ ++H N+ + G ICLDIL+ + W+P +
Sbjct: 73 LSEMFHPNVYANGEICLDILQ------------------------------NRWTPTYDV 102
Query: 134 SKVLLSICSLLTDCNPADP 152
+ +L SI SL D NPA P
Sbjct: 103 ASILTSIQSLFNDPNPASP 121
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+++Y+W ++GPP ++YEGG F + F +YP KPPK+ F + I+H NI+ +G +C+
Sbjct: 31 NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCIS 90
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
IL D P D G + ++ W P T+ +LLS+ S+LTD N
Sbjct: 91 ILHD---PG-----------DDKWG---YERPEERWLPVHTVETILLSVISMLTDPNFES 133
Query: 152 P 152
P
Sbjct: 134 P 134
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
++LY W I+GPP ++YEGGVF + F +YP +PPK+ F T I+H N++ G +C+
Sbjct: 45 NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 104
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
IL + + + ++ W P T+ +++S+ S+L D N
Sbjct: 105 ILHEP-----------------GEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDS 147
Query: 152 P 152
P
Sbjct: 148 P 148
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 30/134 (22%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+N+ W + I GP + ++GG F L + FS +YP KPP V F +R++H NI + G ICLD
Sbjct: 31 NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLD 90
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
IL+ + WSP ++ +L SI SLL D NP
Sbjct: 91 ILQ------------------------------NQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 152 PLVAKHSDTVSTKQ 165
P ++ + S +
Sbjct: 121 PANSEAARMYSESK 134
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 30/121 (24%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
DN+ W + I GP + +E G F L + F+ EYP KPP V F ++++H N+ + G ICLD
Sbjct: 31 DNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLD 90
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
IL+ + WSP ++ +L SI SLL + NP
Sbjct: 91 ILQ------------------------------NRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 152 P 152
P
Sbjct: 121 P 121
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 30/121 (24%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
DN+ W + I GP + +E G F L + F+ EYP KPP V F ++++H N+ + G ICLD
Sbjct: 34 DNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLD 93
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
IL+ + WSP ++ +L SI SLL + NP
Sbjct: 94 ILQ------------------------------NRWSPTYDVAAILTSIQSLLDEPNPNS 123
Query: 152 P 152
P
Sbjct: 124 P 124
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
DNL++WV TI G G+VYE + L + F YP+ P V F T YH N+++QG I LD
Sbjct: 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLD 116
Query: 92 ILKDNWS 98
ILK+ WS
Sbjct: 117 ILKEKWS 123
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
++ P +N++ W I GPP + Y GVF + F +YP PPK+TF I H NI
Sbjct: 24 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
G +C+ IL SP P ++ ++ WSP ++ K+LLS+ S+
Sbjct: 84 PNGEVCISILH---SPGDDPN--------------MYELAEERWSPVQSVEKILLSVMSM 126
Query: 144 LTDCN 148
L++ N
Sbjct: 127 LSEPN 131
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 100 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 131
Query: 153 LVAK 156
A+
Sbjct: 132 AQAE 135
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
+LY W I GPP + YEGG F + F +YP+ PP F T+++H NI G +C+ I
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L P + D G ++ + W+P + +LLS+ SLL + N P
Sbjct: 96 L----HPPVD---------DPQSG----ELPSERWNPTQNVRTILLSVISLLNEPNTFSP 138
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
+LY W I GPP + YEGG F + F +YP+ PP F T+++H NI G +C+ I
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L P + D G ++ + W+P + +LLS+ SLL + N P
Sbjct: 93 L----HPPVD---------DPQSG----ELPSERWNPTQNVRTILLSVISLLNEPNTFSP 135
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 19 YSSLTFISPPSI------GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVT 72
Y LT P I +N +EW + I+GP + +E GVF + F +YP PPK+
Sbjct: 15 YKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMR 74
Query: 73 FRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALT 132
F ++H NI G +C+ IL +P P + + + WSP +
Sbjct: 75 FTCEMFHPNIYPDGRVCISILH---APGDDP--------------MGYESSAERWSPVQS 117
Query: 133 ISKVLLSICSLLTDCN 148
+ K+LLS+ S+L + N
Sbjct: 118 VEKILLSVVSMLAEPN 133
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 19 YSSLTFISPPSI------GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVT 72
Y LT P I +N +EW + I+GP + +E GVF + F +YP PPK+
Sbjct: 12 YKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMR 71
Query: 73 FRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALT 132
F ++H NI G +C+ IL +P P + + + WSP +
Sbjct: 72 FTCEMFHPNIYPDGRVCISILH---APGDDP--------------MGYESSAERWSPVQS 114
Query: 133 ISKVLLSICSLLTDCN 148
+ K+LLS+ S+L + N
Sbjct: 115 VEKILLSVVSMLAEPN 130
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 19 YSSLTFISPPSI------GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVT 72
Y LT P I +N +EW + I+GP + +E GVF + F +YP PPK+
Sbjct: 16 YKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMR 75
Query: 73 FRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALT 132
F ++H NI G +C+ IL +P P + + + WSP +
Sbjct: 76 FTCEMFHPNIYPDGRVCISILH---APGDDP--------------MGYESSAERWSPVQS 118
Query: 133 ISKVLLSICSLLTDCN 148
+ K+LLS+ S+L + N
Sbjct: 119 VEKILLSVVSMLAEPN 134
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 19 YSSLTFISPPSI------GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVT 72
Y LT P I +N +EW + I+GP + +E GVF + F +YP PPK+
Sbjct: 18 YKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMR 77
Query: 73 FRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALT 132
F ++H NI G +C+ IL +P P + + + WSP +
Sbjct: 78 FTCEMFHPNIYPDGRVCISILH---APGDDP--------------MGYESSAERWSPVQS 120
Query: 133 ISKVLLSICSLLTDCN 148
+ K+LLS+ S+L + N
Sbjct: 121 VEKILLSVVSMLAEPN 136
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 99 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 130
Query: 153 LVAK 156
A+
Sbjct: 131 AQAE 134
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 98 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 129
Query: 153 LVAK 156
A+
Sbjct: 130 AQAE 133
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 99 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 130
Query: 153 LVAK 156
A+
Sbjct: 131 AQAE 134
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 97 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 128
Query: 153 LVAK 156
A+
Sbjct: 129 AQAE 132
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 102 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 133
Query: 153 LVAK 156
A+
Sbjct: 134 AQAE 137
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 100 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 131
Query: 153 LVAK 156
A+
Sbjct: 132 AQAE 135
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 28/122 (22%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90
G +L W I G P + +EGG++ L + F EYP +PPK F ++H N+ G +CL
Sbjct: 41 GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCL 100
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 150
IL + ++ W PA+TI ++LL I LL D N A
Sbjct: 101 SILNE----------------------------EEGWKPAITIKQILLGIQDLLDDPNIA 132
Query: 151 DP 152
P
Sbjct: 133 SP 134
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 28/120 (23%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
+L +W + I G G+ + GGV+ + + + EYP KPPKV F YH N+ G ICL I
Sbjct: 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 96
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L ++ +W PA+T+ +++L + LL NP P
Sbjct: 97 LNED----------------------------QDWRPAITLKQIVLGVQDLLDSPNPNSP 128
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 28/120 (23%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
+L +W + I G G+ + GGV+ + + + EYP KPPKV F YH N+ G ICL I
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 98
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L ++ +W PA+T+ +++L + LL NP P
Sbjct: 99 LNED----------------------------QDWRPAITLKQIVLGVQDLLDSPNPNSP 130
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H + G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 100 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 131
Query: 153 LVAK 156
A+
Sbjct: 132 AQAE 135
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N P
Sbjct: 100 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQSP 131
Query: 153 LVAK 156
A+
Sbjct: 132 AQAE 135
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N P
Sbjct: 100 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQAP 131
Query: 153 LVAK 156
A+
Sbjct: 132 AQAE 135
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G + L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 97 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 128
Query: 153 LVAK 156
A+
Sbjct: 129 AQAE 132
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G + L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 152
L+++ +W PA+TI ++LL I LL + N DP
Sbjct: 97 LEED----------------------------KDWRPAITIKQILLGIQELLNEPNIQDP 128
Query: 153 LVAK 156
A+
Sbjct: 129 AQAE 132
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR--IYHCNINSQG 86
S+ +++ +W+ + G PG++YEG F L FS YPF P+V F H ++ S G
Sbjct: 48 SVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNG 107
Query: 87 VICLDILKDNWSPALT 102
ICL IL ++WSPAL+
Sbjct: 108 HICLSILTEDWSPALS 123
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 16 RVVYSSLTFIS--PPSI------GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFK 67
R+VY +T ++ PP ++L + TI GP G+ Y GG+F + + ++P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 68 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPAL 101
PPK F T+I+H N+ + G IC+++LK +W+ L
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAEL 109
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
N+ W + +L P Y F L I F PEYPFKPP + F T+IYH N++ G ICL I
Sbjct: 30 NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPI 88
Query: 93 L-KDNWSP 99
+ +NW P
Sbjct: 89 ISSENWKP 96
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
N+ W + +L P Y F L I F PEYPFKPP + F T+IYH N++ G ICL I
Sbjct: 33 NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPI 91
Query: 93 L-KDNWSP 99
+ +NW P
Sbjct: 92 ISSENWKP 99
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLD 91
L E+V GP G+ YEGGV+ + + +YPFK P + F +I+H NI+ + G +CLD
Sbjct: 49 GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLD 108
Query: 92 ILKDNWS 98
++ W+
Sbjct: 109 VINQTWT 115
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 2 SGYRQYWDPQALC--TRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIH 59
S R+ D LC TR VY S D + E+ GP G+ YE G + L +
Sbjct: 13 SNRRREMDYMRLCNSTRKVYPS----------DTVAEFWVEFKGPEGTPYEDGTWMLHVQ 62
Query: 60 FSPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSP 99
+YPFK P + F RI H N++ + G +CLD++ W+P
Sbjct: 63 LPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTP 103
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 41 ILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 100
++ P Y+ G F YP PPKV T +YH NI+ +G +CL+IL+++W
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDW--- 96
Query: 101 LTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDT 160
P LTI+ ++ + L + NP DPL + ++
Sbjct: 97 ---------------------------KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV 129
Query: 161 VSTKQGRTRSDVQ 173
+ + +VQ
Sbjct: 130 LQNNRRLFEQNVQ 142
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 26 SPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ 85
SP S + + I+ P Y G ++ F+ YP +PPKV +I+H NI+ +
Sbjct: 54 SPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLK 113
Query: 86 GVICLDILKDNWSPAL 101
G +CL+IL+++WSPAL
Sbjct: 114 GNVCLNILREDWSPAL 129
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 9 DPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKP 68
DP A R + SL P +L +W + I GP + YE F + I YP P
Sbjct: 26 DPIANPYRGIIESLN----PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81
Query: 69 PKVTF-RTRIYHCNINSQ-GVICLDILK-DNWSPALTPFYC 106
PK++F + I HCN+ S G ICL+ILK + W+P +C
Sbjct: 82 PKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 9 DPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKP 68
DP A R + SL P +L +W + I GP + YE F + I YP P
Sbjct: 26 DPIANPYRGIIESLN----PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81
Query: 69 PKVTF-RTRIYHCNINSQ-GVICLDILK-DNWSPALTPFYC 106
PK++F + I HCN+ S G ICL+ILK + W+P +C
Sbjct: 82 PKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 30/133 (22%)
Query: 41 ILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 100
++ P Y+ G F YP PPKV T +YH NI+ +G + L+IL+++W
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDW--- 116
Query: 101 LTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDT 160
P LTI+ ++ + L + NP DPL + ++
Sbjct: 117 ---------------------------KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV 149
Query: 161 VSTKQGRTRSDVQ 173
+ + +VQ
Sbjct: 150 LQNNRRLFEQNVQ 162
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 9 DPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKP 68
DP A R + SL P +L +W + I GP + YE F + I YP P
Sbjct: 26 DPIANPYRGIIESLN----PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81
Query: 69 PKVTF-RTRIYHCNINSQ-GVICLDILK-DNWSPALTPFYC 106
PK++F + I H N+ S G ICL+ILK + W+P +C
Sbjct: 82 PKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHC 122
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 43 GPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSP 99
GP G+ YEGG++ + + +YPF P + F ++ H N++ + G +CLD++ W+P
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTP 94
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 32 DNLYEWVSTILGPPGSVY--EGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
D +Y W+ + P SVY G + L + FS +YP +PP V F T +Y + +G IC
Sbjct: 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGIC 106
Query: 90 LDILKDNWSP 99
++ D W+P
Sbjct: 107 DRMVNDFWTP 116
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I+ + +++ EW I G SV++G VF L IHF+ EY + PP V F T +H N++
Sbjct: 43 ITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102
Query: 85 Q-GVICLDILKD 95
G C+D L +
Sbjct: 103 HTGQPCIDFLDN 114
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR-IYHCNINSQGVICL 90
+N+ W+ +G ++Y V+ L I F +YP KPP V F + H ++ S G ICL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 91 DILKDNWSPALT 102
+L D+++P+L+
Sbjct: 93 SLLGDDYNPSLS 104
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 31/135 (22%)
Query: 16 RVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT 75
R+ + +I + N+ EW + GP + YEGG + + F E+PFKPP
Sbjct: 25 RIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS----- 79
Query: 76 RIYHCNINSQGVICLDILKDNWSPALTPFYCSI-LCLDLNQGVICLDILKDNWSPALTIS 134
IY N + F C+ LCL + D D W+PA ++S
Sbjct: 80 -IYMITPNGR------------------FKCNTRLCLSIT------DFHPDTWNPAWSVS 114
Query: 135 KVLLSICSLLTDCNP 149
+L + S + + P
Sbjct: 115 TILTGLLSFMVEKGP 129
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVI 88
L W ILGPP ++YE ++ L I P+YP PP V F T+I +N S GV+
Sbjct: 40 LTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVI 88
L W I+GPP ++YE ++ L I P+YP PP V F T+I +N S GV+
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR-IYHCNINSQGVICLD 91
N+ W+ +G ++Y V+ + I F YP KPP V F + H ++ S G ICL
Sbjct: 48 NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLS 107
Query: 92 ILKDNWSPALT 102
+L D+++P+L+
Sbjct: 108 VLGDDYNPSLS 118
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVI 88
L W I+GPP ++YE ++ L I P+YP PP V F T+I +N S GV+
Sbjct: 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDI 92
+ +W TILGPP S +E ++ L I P YP PPKVTF ++I +N + G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 93 --LKDNWSPALTPFYCSILCLDLNQ 115
L+D W A T L LDL +
Sbjct: 98 HTLRD-WKRAYT---METLLLDLRK 118
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDI 92
+ +W TILGPP S +E ++ L I P YP PPKVTF ++I +N + G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 93 --LKDNWSPALTPFYCSILCLDLNQ 115
L+D W A T L LDL +
Sbjct: 99 HTLRD-WKRAYT---METLLLDLRK 119
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 44 PPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTP 103
P Y+GG F + Y PPKV T+I+H NI G ICL +L+++
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH------- 105
Query: 104 FYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD-CNPADPL 153
I W+P T+ V+ + SL TD N DPL
Sbjct: 106 -----------------SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPL 139
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 44 PPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTP 103
P Y+GG F + Y PPKV T+I+H NI G ICL +L+++
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH------- 105
Query: 104 FYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD-CNPADPL 153
I W+P T+ V+ + SL TD N DPL
Sbjct: 106 -----------------SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPL 139
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNI-NSQGVI 88
L W I+GPP + YE ++ L + P+YP PP V F T+I I NS G++
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNI-NSQGVI 88
L W I+GPP + YE ++ L + P+YP PP V F T+I I NS G++
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNI-NSQGVI 88
L W I+GPP + YE ++ L + P+YP PP V F T+I I NS G++
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNI-NSQGVI 88
L W I+GPP + YE ++ L + P+YP PP V F T+I I NS G++
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 29/120 (24%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 93
L W TI G PG+V+E ++ L I YP PP V F T+I +++ C ++
Sbjct: 58 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN----CGRVI 113
Query: 94 KDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI-CSLLTDCNPADP 152
K+N L ILK NW+ TI +L+S+ +L+ N P
Sbjct: 114 KNN-----------------------LHILK-NWNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 29/120 (24%)
Query: 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 93
L W TI G PG+V+E ++ L I YP PP V F T+I +++ C ++
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN----CGRVI 109
Query: 94 KDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI-CSLLTDCNPADP 152
K+N L ILK NW+ TI +L+S+ +L+ N P
Sbjct: 110 KNN-----------------------LHILK-NWNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 41 ILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHC-----NINSQGVICLDIL-- 93
I GP + Y G F D++F +YP PP V T H N+ + G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 94 -----KDNWSPALTPF 104
++ W+P + F
Sbjct: 176 WHGRPEEKWNPQTSSF 191
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDIL-KDNWSPALTISKVLLSICSLLTDCNP 149
D L W+ F C DL Q V+CL + +D +SP + + + + + T+
Sbjct: 428 DTLNPKWN-----FNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482
Query: 150 ADPLVAK 156
P+ +
Sbjct: 483 KGPMTRR 489
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKD 125
L K L PF C +L + +NQG L+ KD
Sbjct: 27 LKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKD 125
L K L PF C +L + +NQG L+ KD
Sbjct: 27 LKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKD 125
L K L PF C +L + +NQG L+ KD
Sbjct: 27 LKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKD 125
L K L PF C +L + +NQG L+ KD
Sbjct: 27 LKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,192,497
Number of Sequences: 62578
Number of extensions: 252866
Number of successful extensions: 610
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 219
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)