Query psy3655
Match_columns 194
No_of_seqs 137 out of 1235
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:16:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 4.3E-46 9.3E-51 294.3 14.6 142 10-183 6-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 8.4E-45 1.8E-49 290.9 14.9 142 10-183 10-152 (153)
3 KOG0419|consensus 100.0 3.8E-43 8.3E-48 272.2 13.7 141 11-183 10-150 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 4.8E-42 1E-46 275.1 16.5 142 10-183 7-148 (152)
5 KOG0425|consensus 100.0 5.8E-42 1.2E-46 272.2 15.6 156 11-185 11-167 (171)
6 PLN00172 ubiquitin conjugating 100.0 1.1E-41 2.4E-46 271.5 16.5 141 10-182 6-146 (147)
7 KOG0426|consensus 100.0 3.6E-38 7.8E-43 244.9 13.4 161 1-181 1-162 (165)
8 PF00179 UQ_con: Ubiquitin-con 100.0 3.3E-38 7.2E-43 247.6 12.7 137 11-178 3-140 (140)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 5.2E-37 1.1E-41 241.3 14.7 138 10-178 4-141 (141)
10 smart00212 UBCc Ubiquitin-conj 100.0 3.3E-36 7.2E-41 237.7 16.0 141 11-182 4-145 (145)
11 KOG0424|consensus 100.0 1.5E-36 3.3E-41 238.2 13.6 139 15-183 14-157 (158)
12 KOG0418|consensus 100.0 2.9E-36 6.2E-41 245.8 12.4 143 10-184 8-154 (200)
13 KOG0421|consensus 100.0 3.5E-36 7.7E-41 236.6 11.7 138 11-181 35-172 (175)
14 KOG0422|consensus 100.0 1.8E-31 3.8E-36 208.8 13.0 140 13-184 10-150 (153)
15 KOG0416|consensus 100.0 5.1E-31 1.1E-35 212.2 10.5 132 23-186 18-151 (189)
16 KOG0420|consensus 100.0 1.7E-30 3.7E-35 209.4 9.8 123 25-180 48-172 (184)
17 KOG0423|consensus 100.0 7.6E-30 1.7E-34 206.2 5.8 141 12-184 17-157 (223)
18 KOG0429|consensus 99.9 2E-23 4.3E-28 174.4 12.6 149 5-185 19-172 (258)
19 KOG0894|consensus 99.9 6.3E-23 1.4E-27 170.9 14.0 105 11-146 11-117 (244)
20 KOG0427|consensus 99.9 1.9E-22 4.2E-27 156.9 10.5 105 11-146 21-126 (161)
21 KOG0428|consensus 99.7 8.2E-18 1.8E-22 142.9 9.1 98 20-146 25-122 (314)
22 KOG0895|consensus 99.7 8.3E-18 1.8E-22 164.5 6.7 116 10-148 856-973 (1101)
23 KOG0895|consensus 99.5 1E-13 2.2E-18 136.2 10.7 114 11-147 288-405 (1101)
24 KOG0896|consensus 99.1 1.7E-10 3.6E-15 90.4 6.8 84 34-145 38-122 (138)
25 KOG0897|consensus 98.5 1.6E-07 3.5E-12 71.9 5.0 94 55-178 14-110 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 3.2E-06 6.9E-11 66.2 7.8 67 50-146 34-106 (133)
27 PF05743 UEV: UEV domain; Int 97.7 6.3E-05 1.4E-09 58.3 5.1 79 33-146 31-117 (121)
28 KOG2391|consensus 96.8 0.0025 5.4E-08 57.3 5.8 81 33-148 51-139 (365)
29 PF05773 RWD: RWD domain; Int 94.2 0.14 3E-06 37.4 5.5 48 30-77 25-74 (113)
30 PF14457 Prok-E2_A: Prokaryoti 93.9 0.07 1.5E-06 43.4 3.7 63 55-146 56-126 (162)
31 PF08694 UFC1: Ubiquitin-fold 92.3 0.22 4.7E-06 40.0 4.2 40 54-93 77-117 (161)
32 smart00591 RWD domain in RING 92.0 0.93 2E-05 32.7 7.0 27 50-76 39-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 91.9 1.3 2.7E-05 34.6 8.0 99 24-145 13-120 (122)
34 KOG3357|consensus 67.3 6.3 0.00014 31.3 3.1 65 27-91 43-118 (167)
35 cd07981 TAF12 TATA Binding Pro 59.5 30 0.00065 24.0 5.1 50 140-191 7-56 (72)
36 PF03847 TFIID_20kDa: Transcri 54.5 38 0.00083 23.5 4.9 51 139-191 4-54 (68)
37 KOG4018|consensus 52.4 13 0.00028 31.8 2.6 36 36-73 32-70 (215)
38 PF06113 BRE: Brain and reprod 50.2 38 0.00082 30.8 5.4 42 34-81 53-95 (333)
39 PF14460 Prok-E2_D: Prokaryoti 44.3 41 0.00088 27.3 4.4 13 80-92 98-110 (175)
40 smart00803 TAF TATA box bindin 41.4 90 0.002 21.3 5.1 38 152-191 19-56 (65)
41 PF09765 WD-3: WD-repeat regio 36.1 50 0.0011 29.3 3.9 37 31-73 122-158 (291)
42 KOG0309|consensus 33.5 1.4E+02 0.0031 30.4 6.8 43 34-76 448-491 (1081)
43 cd00421 intradiol_dioxygenase 29.1 74 0.0016 24.9 3.5 25 51-75 65-90 (146)
44 cd03457 intradiol_dioxygenase_ 26.4 85 0.0018 26.0 3.5 25 51-75 86-110 (188)
45 PF00808 CBFD_NFYB_HMF: Histon 26.0 2E+02 0.0044 19.0 5.0 50 140-191 8-57 (65)
46 PF03366 YEATS: YEATS family; 24.3 2.6E+02 0.0056 20.0 5.3 43 35-79 2-44 (84)
47 PF06113 BRE: Brain and reprod 24.2 86 0.0019 28.5 3.4 24 53-76 307-330 (333)
48 TIGR03737 PRTRC_B PRTRC system 22.9 1.4E+02 0.0029 25.8 4.2 14 80-93 139-152 (228)
49 cd03459 3,4-PCD Protocatechuat 21.6 1.2E+02 0.0026 24.3 3.5 25 51-75 72-101 (158)
50 KOG4445|consensus 20.8 1.1E+02 0.0024 27.8 3.2 27 50-76 43-69 (368)
No 1
>KOG0417|consensus
Probab=100.00 E-value=4.3e-46 Score=294.25 Aligned_cols=142 Identities=55% Similarity=0.897 Sum_probs=137.2
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
...+++++.+++++|+++.|+++|++.|+++|.||.||||+||+|++.|.||++||++||+|+|.|+||||||+..|.||
T Consensus 6 I~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~Ic 85 (148)
T KOG0417|consen 6 IIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRIC 85 (148)
T ss_pred HHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccch
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+|+| ++.|+|+++|+.||++|++||.+||+++|++.++|.+|+ .|+++
T Consensus 86 lDIL------------------------------k~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k--~d~~~ 133 (148)
T KOG0417|consen 86 LDIL------------------------------KDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYK--TDRAK 133 (148)
T ss_pred HHhh------------------------------hccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHH--hhHHH
Confidence 9999 778999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|++.||+|++++|.
T Consensus 134 ~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 134 YERTAREWTRKYAM 147 (148)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-45 Score=290.91 Aligned_cols=142 Identities=39% Similarity=0.701 Sum_probs=135.2
Q ss_pred cHHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
...+++++++.+..++++.|..+ |+++|+++|.||.+|+|+||+|++.|+||++||++||+|+|.++||||||+++|+|
T Consensus 10 L~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~v 89 (153)
T COG5078 10 LLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNV 89 (153)
T ss_pred HHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCC
Confidence 34566778888889999998888 99999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+|+| .+.|+|++++++||++|+++|.+||+++|+|.|||.+|+ .|++
T Consensus 90 CLdIL------------------------------~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~--~d~~ 137 (153)
T COG5078 90 CLDIL------------------------------KDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYR--EDKE 137 (153)
T ss_pred hhHHH------------------------------hCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHH--hCHH
Confidence 99999 789999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhh
Q psy3655 169 RSDVQTMDQTLCHAE 183 (194)
Q Consensus 169 ~f~~~v~~~~~~~~~ 183 (194)
+|.++|++++++++.
T Consensus 138 ~y~~~vr~~~~~~~~ 152 (153)
T COG5078 138 EYEKKVREWVKKYAE 152 (153)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999875
No 3
>KOG0419|consensus
Probab=100.00 E-value=3.8e-43 Score=272.17 Aligned_cols=141 Identities=33% Similarity=0.614 Sum_probs=135.4
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
.+-+||+++.++.||+..|.++|+++|.++|+||.+|||+||+|++.|+|+++||.+||.|+|.+.+|||||+.+|.+|+
T Consensus 10 mrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iCl 89 (152)
T KOG0419|consen 10 MRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICL 89 (152)
T ss_pred HHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
|+| +.+|+|.|++..||.+||+||.+|++++|+|.|||++|. +++.+|
T Consensus 90 DiL------------------------------qNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~--e~~rey 137 (152)
T KOG0419|consen 90 DIL------------------------------QNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFS--ENKREY 137 (152)
T ss_pred HHH------------------------------hcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHh--hChHHH
Confidence 999 789999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhh
Q psy3655 171 DVQTMDQTLCHAE 183 (194)
Q Consensus 171 ~~~v~~~~~~~~~ 183 (194)
.++|++.+.++..
T Consensus 138 ~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 138 ERRVKETVEQSWS 150 (152)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877654
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.8e-42 Score=275.11 Aligned_cols=142 Identities=37% Similarity=0.592 Sum_probs=137.5
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+++++++.++++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+++|.||
T Consensus 7 l~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iC 86 (152)
T PTZ00390 7 IEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRIC 86 (152)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEE
Confidence 46778889989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|+++
T Consensus 87 l~iL------------------------------~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~--~d~~~ 134 (152)
T PTZ00390 87 LDIL------------------------------KDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFK--NNRAD 134 (152)
T ss_pred CccC------------------------------cccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHH--HCHHH
Confidence 9999 788999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|+++|++++++++.
T Consensus 135 f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 135 AEKVAREWNQKYAK 148 (152)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 5
>KOG0425|consensus
Probab=100.00 E-value=5.8e-42 Score=272.21 Aligned_cols=156 Identities=24% Similarity=0.493 Sum_probs=140.6
Q ss_pred HHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 11 QALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
...+|+|.+++..|+++...++ |+++|.+.|+||++|+|+||+|+..+.||.+||.+||+++|++.+|||||+++|+||
T Consensus 11 ~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vC 90 (171)
T KOG0425|consen 11 LKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVC 90 (171)
T ss_pred HHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEE
Confidence 4567889999999998877765 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++|++ ||.|... ++...+.|+|..|+++||++|.+||.+||.++|+|.+||+.|+ +++++
T Consensus 91 ISILH~-------------pgdD~~g----yE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~R--en~~E 151 (171)
T KOG0425|consen 91 ISILHP-------------PGDDPSG----YELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWR--ENPEE 151 (171)
T ss_pred EEeecC-------------CCCCccc----CCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHh--hCHHH
Confidence 999973 2322222 3445799999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy3655 170 SDVQTMDQTLCHAESL 185 (194)
Q Consensus 170 f~~~v~~~~~~~~~~~ 185 (194)
|.++|++++++..+-.
T Consensus 152 ykkkV~r~vr~s~e~~ 167 (171)
T KOG0425|consen 152 YKKKVRRCVRRSQEEA 167 (171)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999876654
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-41 Score=271.51 Aligned_cols=141 Identities=51% Similarity=0.852 Sum_probs=135.8
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++++++..++++.++++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+++|.||
T Consensus 6 l~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iC 85 (147)
T PLN00172 6 IQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSIC 85 (147)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEE
Confidence 35678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .+.|+|++|+++||.+|+++|.+|++++|+|.+||++|. +|+++
T Consensus 86 l~il------------------------------~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~--~~~~~ 133 (147)
T PLN00172 86 LDIL------------------------------RDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFK--ENRSR 133 (147)
T ss_pred cccC------------------------------cCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHH--HCHHH
Confidence 9999 688999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q psy3655 170 SDVQTMDQTLCHA 182 (194)
Q Consensus 170 f~~~v~~~~~~~~ 182 (194)
|.++|++++++++
T Consensus 134 f~~~a~~~~~~~a 146 (147)
T PLN00172 134 YEATAREWTQRYA 146 (147)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999876
No 7
>KOG0426|consensus
Probab=100.00 E-value=3.6e-38 Score=244.89 Aligned_cols=161 Identities=27% Similarity=0.466 Sum_probs=142.1
Q ss_pred CCCCCcccCcHHHHHHhhhcCCCCeec-cCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy3655 1 MSGYRQYWDPQALCTRVVYSSLTFISP-PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYH 79 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 79 (194)
|+|+++-+ .-+++|+|-..++.||.+ +.++||+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+||
T Consensus 1 m~~~AlkR-Lm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MAGTALKR-LMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred CchhHHHH-HHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 45544322 345677778889999755 5567899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHH
Q psy3655 80 CNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSD 159 (194)
Q Consensus 80 PnV~~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~ 159 (194)
|||+++|+||+++|+. ||+|+++ ++...++|+|..+++.||+++.++|.+||.++.+|.+|+.
T Consensus 80 PNiy~dG~VCISILHa-------------PGDDP~~----YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~ 142 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHA-------------PGDDPMG----YELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACK 142 (165)
T ss_pred CcccCCCeEEEEEeeC-------------CCCCCcc----chhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHH
Confidence 9999999999999962 4555555 6666899999999999999999999999999999999999
Q ss_pred HhccccchHHHHHHHHHHHHHH
Q psy3655 160 TVSTKQGRTRSDVQTMDQTLCH 181 (194)
Q Consensus 160 l~~~~~~~~~f~~~v~~~~~~~ 181 (194)
+++ +||++|.+.|+..++|.
T Consensus 143 mWR--e~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 143 MWR--EDREEFEKIAKRLVRKT 162 (165)
T ss_pred HHH--HhHHHHHHHHHHHHHHh
Confidence 999 99999999999988875
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.3e-38 Score=247.60 Aligned_cols=137 Identities=44% Similarity=0.780 Sum_probs=125.2
Q ss_pred HHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 11 QALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
+.+++++.++++.|+.+.+.++ |+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|+++||||+.+|.||
T Consensus 3 ~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ic 82 (140)
T PF00179_consen 3 QKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRIC 82 (140)
T ss_dssp HHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBG
T ss_pred HHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccch
Confidence 5678899999999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++|. .+.|+|++++.+||.+|+++|.+|+.++|+|.+||++|+ +++++
T Consensus 83 l~~l~-----------------------------~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~--~~~~~ 131 (140)
T PF00179_consen 83 LDILN-----------------------------PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYK--NDREE 131 (140)
T ss_dssp HGGGT-----------------------------TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHH--HCHHH
T ss_pred hhhhh-----------------------------cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHH--HCHHH
Confidence 99993 356999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHH
Q psy3655 170 SDVQTMDQT 178 (194)
Q Consensus 170 f~~~v~~~~ 178 (194)
|+++|++|.
T Consensus 132 f~~~~~~~~ 140 (140)
T PF00179_consen 132 FEKKAREWA 140 (140)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHcC
Confidence 999999873
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.2e-37 Score=241.32 Aligned_cols=138 Identities=45% Similarity=0.757 Sum_probs=130.9
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+++++++++++..|+++.++++|+++|+++|.||++|+|+||+|++.|.||++||++||+|+|.++++||||+++|.||
T Consensus 4 l~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ic 83 (141)
T cd00195 4 LQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKIC 83 (141)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++|. .+.|+|++++.+||.+|+++|.+|+.++|+|.+||.+|+ +|+++
T Consensus 84 l~~l~-----------------------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~--~~~~~ 132 (141)
T cd00195 84 LSILK-----------------------------THGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYK--ENREE 132 (141)
T ss_pred hhhcC-----------------------------CCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHH--HCHHH
Confidence 99993 235999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHH
Q psy3655 170 SDVQTMDQT 178 (194)
Q Consensus 170 f~~~v~~~~ 178 (194)
|.++|++++
T Consensus 133 f~~~~~~~~ 141 (141)
T cd00195 133 FKKKAREWT 141 (141)
T ss_pred HHHHHHHhC
Confidence 999999864
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.3e-36 Score=237.71 Aligned_cols=141 Identities=46% Similarity=0.774 Sum_probs=133.0
Q ss_pred HHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 11 QALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.++++.+.+++..|+.+.+.++ |+++|+++|.||++|+|+||+|+|.|.||++||.+||+|+|.++++||||+++|.||
T Consensus 4 ~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~ic 83 (145)
T smart00212 4 LKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEIC 83 (145)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEe
Confidence 5678888889999998888776 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++|. .++|+|++++.++|.+|+++|.+|+.++|+|.+||++|. +++++
T Consensus 84 l~~l~-----------------------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~--~~~~~ 132 (145)
T smart00212 84 LDILK-----------------------------QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYK--KNREE 132 (145)
T ss_pred hhhcC-----------------------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCHHH
Confidence 99982 278999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q psy3655 170 SDVQTMDQTLCHA 182 (194)
Q Consensus 170 f~~~v~~~~~~~~ 182 (194)
|.++|++++++++
T Consensus 133 f~~~~~~~~~k~~ 145 (145)
T smart00212 133 FKKKAREWTKKYA 145 (145)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 11
>KOG0424|consensus
Probab=100.00 E-value=1.5e-36 Score=238.25 Aligned_cols=139 Identities=29% Similarity=0.534 Sum_probs=125.5
Q ss_pred HHhhhcCCCCeeccCCC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 15 TRVVYSSLTFISPPSIG-----DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 15 ~~~~~~~~~~i~~~p~~-----~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
+...+..+-|+++.|.. .|++.|++.|.|++||+|+||.|++.+.||++||.+||++.|.+++|||||++.|.||
T Consensus 14 k~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVc 93 (158)
T KOG0424|consen 14 KKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVC 93 (158)
T ss_pred HHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEe
Confidence 33455555566555542 4799999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
|++|.+ ..+|+|+.||.+||+.||.||.+||+.+|+|.||...|. +||.+
T Consensus 94 LsiL~e----------------------------~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~--~~r~e 143 (158)
T KOG0424|consen 94 LSILNE----------------------------EKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYC--QDRAE 143 (158)
T ss_pred hhhhcc----------------------------ccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHh--hCHHH
Confidence 999942 456999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|+++|+.++++++.
T Consensus 144 Yekrvr~qak~~a~ 157 (158)
T KOG0424|consen 144 YEKRVRAQAKEYAK 157 (158)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988764
No 12
>KOG0418|consensus
Probab=100.00 E-value=2.9e-36 Score=245.81 Aligned_cols=143 Identities=38% Similarity=0.550 Sum_probs=135.9
Q ss_pred cHHHHHHhhhcC---CCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCC-
Q psy3655 10 PQALCTRVVYSS---LTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ- 85 (194)
Q Consensus 10 ~~~~~~~~~~~~---~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~- 85 (194)
.+.+||+++.++ ..+|.+...++|+.+-.+.|.||+||||+||+|.++|++|++||++||+|+|.|+||||||.+.
T Consensus 8 i~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~t 87 (200)
T KOG0418|consen 8 INREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQT 87 (200)
T ss_pred HHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCccc
Confidence 467888888888 6899999999999999999999999999999999999999999999999999999999999964
Q ss_pred CcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhcccc
Q psy3655 86 GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQ 165 (194)
Q Consensus 86 G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~ 165 (194)
|.||+|+| ++.|.+++|++++|.+||++|..|++.+|.++++|++|. +
T Consensus 88 GaICLDil------------------------------kd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~--~ 135 (200)
T KOG0418|consen 88 GAICLDIL------------------------------KDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYV--D 135 (200)
T ss_pred ccchhhhh------------------------------hcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHh--h
Confidence 88888887 899999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHHhhh
Q psy3655 166 GRTRSDVQTMDQTLCHAES 184 (194)
Q Consensus 166 ~~~~f~~~v~~~~~~~~~~ 184 (194)
+++.|.+.|+.|+..+|..
T Consensus 136 n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 136 NYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred hHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999976
No 13
>KOG0421|consensus
Probab=100.00 E-value=3.5e-36 Score=236.56 Aligned_cols=138 Identities=38% Similarity=0.582 Sum_probs=129.1
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
|.++-.|+....+||++.|++||++.|.++|.||++|+|+|-.|++.+.||.+||+.||+|+|+|+.|||||+-.|.||+
T Consensus 35 q~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcL 114 (175)
T KOG0421|consen 35 QSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICL 114 (175)
T ss_pred HHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchH
Confidence 44555567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
|+| ++.|+..|.+++||++||+||-+||.++|+|..||.++. |.++|
T Consensus 115 DIL------------------------------kdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~---d~~ey 161 (175)
T KOG0421|consen 115 DIL------------------------------KDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS---DQEEY 161 (175)
T ss_pred HHH------------------------------HHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc---CHHHH
Confidence 999 899999999999999999999999999999999999887 88999
Q ss_pred HHHHHHHHHHH
Q psy3655 171 DVQTMDQTLCH 181 (194)
Q Consensus 171 ~~~v~~~~~~~ 181 (194)
.+.+.+..++.
T Consensus 162 kk~l~~~Y~~~ 172 (175)
T KOG0421|consen 162 KKYLEALYKEI 172 (175)
T ss_pred HHHHHHHhhcc
Confidence 99998776654
No 14
>KOG0422|consensus
Probab=99.97 E-value=1.8e-31 Score=208.78 Aligned_cols=140 Identities=30% Similarity=0.590 Sum_probs=128.7
Q ss_pred HHHHhhhcCCCCe-eccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEec
Q psy3655 13 LCTRVVYSSLTFI-SPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91 (194)
Q Consensus 13 ~~~~~~~~~~~~i-~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~ 91 (194)
++..+++.....+ -+..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|.|||||||+.|+||+.
T Consensus 10 EL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClP 88 (153)
T KOG0422|consen 10 ELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLP 88 (153)
T ss_pred HHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeee
Confidence 4444555555443 45677889999999998 899999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHHH
Q psy3655 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRSD 171 (194)
Q Consensus 92 ~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~ 171 (194)
++. .+.|.|+.+..+||.++..++.+|+++.|++.|+|..|. +|+..|.
T Consensus 89 iis-----------------------------~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~--~d~~kF~ 137 (153)
T KOG0422|consen 89 IIS-----------------------------AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYI--KDPKKFV 137 (153)
T ss_pred eee-----------------------------cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHH--HCHHHHH
Confidence 995 899999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhh
Q psy3655 172 VQTMDQTLCHAES 184 (194)
Q Consensus 172 ~~v~~~~~~~~~~ 184 (194)
+++.++++++++.
T Consensus 138 K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 138 KNAEEFTKKYSEK 150 (153)
T ss_pred HhHHHHHHHhcCc
Confidence 9999999999875
No 15
>KOG0416|consensus
Probab=99.97 E-value=5.1e-31 Score=212.23 Aligned_cols=132 Identities=27% Similarity=0.527 Sum_probs=122.7
Q ss_pred CCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCC-CcEEecCcccCCCCCC
Q psy3655 23 TFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPAL 101 (194)
Q Consensus 23 ~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~-G~icl~~l~~~w~~~~ 101 (194)
.+.-|...++++.+++|.+.||.+|+|+||+++++|++|++||++.|+|.|.++||||||+.. |.||+|.+
T Consensus 18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDVi-------- 89 (189)
T KOG0416|consen 18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVI-------- 89 (189)
T ss_pred cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHH--------
Confidence 456788888999999999999999999999999999999999999999999999999999964 99999999
Q ss_pred CccccccccccCCCcceeccccCCCCCccccHHHHHHH-HHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHH
Q psy3655 102 TPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS-ICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLC 180 (194)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~-I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~ 180 (194)
..-|+|.+.+..|+.. |=.||..||+.+|+|.|||.+|. .++++|.++|++++++
T Consensus 90 ----------------------NQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l--~~~~~Y~~~v~eY~~k 145 (189)
T KOG0416|consen 90 ----------------------NQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYL--RDPEEYEEKVKEYIKK 145 (189)
T ss_pred ----------------------hhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHh--cCHHHHHHHHHHHHHH
Confidence 6779999999888876 57899999999999999999999 9999999999999999
Q ss_pred HhhhcC
Q psy3655 181 HAESLN 186 (194)
Q Consensus 181 ~~~~~~ 186 (194)
+|..-.
T Consensus 146 YA~~~~ 151 (189)
T KOG0416|consen 146 YATPEA 151 (189)
T ss_pred hcChhh
Confidence 997654
No 16
>KOG0420|consensus
Probab=99.97 E-value=1.7e-30 Score=209.40 Aligned_cols=123 Identities=30% Similarity=0.600 Sum_probs=113.1
Q ss_pred eeccCCCCCcee--EEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEecCcccCCCCCCC
Q psy3655 25 ISPPSIGDNLYE--WVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALT 102 (194)
Q Consensus 25 i~~~p~~~n~~~--W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~~l~~~w~~~~~ 102 (194)
++++...++++. .+++|. |+++.|+||.|+|.+.+|+.||++||+|.++|+||||||+.+|.||+++|
T Consensus 48 ~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnIL--------- 117 (184)
T KOG0420|consen 48 LSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNIL--------- 117 (184)
T ss_pred cccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHH---------
Confidence 344444555555 999998 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHH
Q psy3655 103 PFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLC 180 (194)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~ 180 (194)
.++|+|+.++.+|+..++.||.+|++++|+|.|||.+++ +|++.|..+|++.-+.
T Consensus 118 ---------------------RedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~--~n~e~F~~~Vr~~m~g 172 (184)
T KOG0420|consen 118 ---------------------REDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLK--SNREGFENNVRRAMSG 172 (184)
T ss_pred ---------------------HhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHH--hCHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999 9999999999876544
No 17
>KOG0423|consensus
Probab=99.96 E-value=7.6e-30 Score=206.23 Aligned_cols=141 Identities=28% Similarity=0.465 Sum_probs=134.2
Q ss_pred HHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEec
Q psy3655 12 ALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91 (194)
Q Consensus 12 ~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~ 91 (194)
.+++.+-..|+.||.|.+.++|++...+.|.||.||||++|.|++.+.+..|||.+||+-.|+|+||||||-.+|.||.+
T Consensus 17 kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVN 96 (223)
T KOG0423|consen 17 KELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVN 96 (223)
T ss_pred HHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhh
Confidence 34556667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHHH
Q psy3655 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRSD 171 (194)
Q Consensus 92 ~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~ 171 (194)
+| +.+|.|...|+.||+.|..||..|++++.+|.||.+++. ++-++|.
T Consensus 97 tL------------------------------KkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLL--EnYdeYa 144 (223)
T KOG0423|consen 97 TL------------------------------KKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLL--ENYDEYA 144 (223)
T ss_pred hh------------------------------hcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHH--HhHHHHH
Confidence 99 889999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhh
Q psy3655 172 VQTMDQTLCHAES 184 (194)
Q Consensus 172 ~~v~~~~~~~~~~ 184 (194)
+++|-.+.-|+..
T Consensus 145 ~rARl~TeIHa~p 157 (223)
T KOG0423|consen 145 RRARLYTEIHAKP 157 (223)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999888754
No 18
>KOG0429|consensus
Probab=99.90 E-value=2e-23 Score=174.42 Aligned_cols=149 Identities=18% Similarity=0.206 Sum_probs=133.4
Q ss_pred CcccCcHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeeeeecccccccc
Q psy3655 5 RQYWDPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPF--KPPKVTFRTRIYHCNI 82 (194)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~--~pP~i~f~t~i~HPnV 82 (194)
.|.|...++.+.+.++..+||+|.|+-.|-+.|.++|++ ..+.|+||+|+|.|.+|++||. .-|+|.|.+.+|||+|
T Consensus 19 ~qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~i 97 (258)
T KOG0429|consen 19 LQEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLI 97 (258)
T ss_pred HHHHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeecccccccc
Confidence 367889999999999999999999999999999999994 6678999999999999999996 6899999999999999
Q ss_pred CCC-CcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCc--ccHHHHH
Q psy3655 83 NSQ-GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP--LVAKHSD 159 (194)
Q Consensus 83 ~~~-G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p--~n~eaa~ 159 (194)
.+. +.+|++...+.|+.++ .+|.+||..||.+|.+|+.+.+ .|+|||.
T Consensus 98 cp~skeLdl~raf~eWRk~e-----------------------------hhiwqvL~ylqriF~dpd~si~kl~N~eAa~ 148 (258)
T KOG0429|consen 98 CPKSKELDLNRAFPEWRKEE-----------------------------HHIWQVLVYLQRIFYDPDVSIDKLINPEAAV 148 (258)
T ss_pred CCCccceeHhhhhhhhhccc-----------------------------cHHHHHHHHHHHHhcCcccchhhhcChHHHH
Confidence 975 8899987755555443 5899999999999999998876 4999999
Q ss_pred HhccccchHHHHHHHHHHHHHHhhhc
Q psy3655 160 TVSTKQGRTRSDVQTMDQTLCHAESL 185 (194)
Q Consensus 160 l~~~~~~~~~f~~~v~~~~~~~~~~~ 185 (194)
+|. ++|++|.++|+++++.....+
T Consensus 149 l~~--k~r~ef~~rvqe~vk~sr~~i 172 (258)
T KOG0429|consen 149 LYK--KHRDEFRERVQECVKASRSMI 172 (258)
T ss_pred HHH--HhHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999998877544
No 19
>KOG0894|consensus
Probab=99.90 E-value=6.3e-23 Score=170.88 Aligned_cols=105 Identities=31% Similarity=0.659 Sum_probs=97.0
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecc--ccccccCCCCcE
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR--IYHCNINSQGVI 88 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~--i~HPnV~~~G~i 88 (194)
+.++++|+++|.+.|.+.|.++|+++||.+|.||+||||+||.|+..|.||++||++||.|+++|+ .|-+| .++
T Consensus 11 ~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktn----tRL 86 (244)
T KOG0894|consen 11 QKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTN----TRL 86 (244)
T ss_pred HHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecC----ceE
Confidence 456778899999999999999999999999999999999999999999999999999999999997 34443 689
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcC
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD 146 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~ 146 (194)
|+++. |.|.+.|+|+|++++||..|.++|.+
T Consensus 87 CLSiS---------------------------DfHPdsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 87 CLSIS---------------------------DFHPDSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred EEecc---------------------------ccCcCcCCCcccHHHHHHHHHHHHhc
Confidence 99988 77899999999999999999999986
No 20
>KOG0427|consensus
Probab=99.88 E-value=1.9e-22 Score=156.88 Aligned_cols=105 Identities=36% Similarity=0.666 Sum_probs=97.1
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccc-cccccCCCCcEE
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI-YHCNINSQGVIC 89 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~HPnV~~~G~ic 89 (194)
|.++.+++.++++|+... ..||+.+|.+-+.|.+||.|+|.+|.+.++||+.||++.|.|.|..++ .||+|+++|.||
T Consensus 21 qKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHIC 99 (161)
T KOG0427|consen 21 QKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHIC 99 (161)
T ss_pred HHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEE
Confidence 445666777899999888 578999999999999999999999999999999999999999999886 699999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcC
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD 146 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~ 146 (194)
+|+| .+.|+|++++.+|.++|.++|++
T Consensus 100 L~iL------------------------------~d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 100 LDIL------------------------------YDSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred EEee------------------------------cccCCcchhhHHHHHHHHHHHcc
Confidence 9999 79999999999999999999996
No 21
>KOG0428|consensus
Probab=99.74 E-value=8.2e-18 Score=142.92 Aligned_cols=98 Identities=30% Similarity=0.631 Sum_probs=85.3
Q ss_pred cCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEecCcccCCCC
Q psy3655 20 SSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP 99 (194)
Q Consensus 20 ~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~~l~~~w~~ 99 (194)
+|...+-..|.+||+++||.+|.||.||.|+||+|+.+|.||.+||++||.+-.+|+--.- --+.+||+++.
T Consensus 25 ~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRF--E~nkKiCLSIS------ 96 (314)
T KOG0428|consen 25 DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRF--EVNKKICLSIS------ 96 (314)
T ss_pred CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCce--eeCceEEEEec------
Confidence 5666777899999999999999999999999999999999999999999999999973211 12357999987
Q ss_pred CCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcC
Q psy3655 100 ALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD 146 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~ 146 (194)
++|.+.|.|+|+|++.|++|..+|-.
T Consensus 97 ---------------------gyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 97 ---------------------GYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ---------------------CCCccccCcchhHHHHHHHHHccccC
Confidence 56789999999999999999988863
No 22
>KOG0895|consensus
Probab=99.71 E-value=8.3e-18 Score=164.53 Aligned_cols=116 Identities=28% Similarity=0.524 Sum_probs=106.8
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecc--ccccccCCCCc
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR--IYHCNINSQGV 87 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~--i~HPnV~~~G~ 87 (194)
-+++.+-+..+.+.+|+|...++.+....++|.|+.+|||++|.|.|.+.||++||.+||.+...+. .++||.+.+|+
T Consensus 856 ~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~ 935 (1101)
T KOG0895|consen 856 VQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGK 935 (1101)
T ss_pred HHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccc
Confidence 3566777888889999999999999999999999999999999999999999999999999999987 58999999999
Q ss_pred EEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCC
Q psy3655 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCN 148 (194)
Q Consensus 88 icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~ 148 (194)
||+++| .+|.+.. .+-|+|+.++.++|.+||.|+....
T Consensus 936 vc~s~l-~tw~g~~----------------------~e~w~~~s~~lq~l~s~q~l~l~~~ 973 (1101)
T KOG0895|consen 936 VCLSLL-NTWHGRG----------------------NEVWNPSSSILQVLVSIQGLVLNEE 973 (1101)
T ss_pred eehhhh-ccccCCC----------------------ccccCcchhHHHHHHHhhhhhcccc
Confidence 999999 7999887 7889999999999999999987533
No 23
>KOG0895|consensus
Probab=99.49 E-value=1e-13 Score=136.17 Aligned_cols=114 Identities=26% Similarity=0.491 Sum_probs=104.3
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecc---ccccccCCCCc
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR---IYHCNINSQGV 87 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~---i~HPnV~~~G~ 87 (194)
+.+++-+.+..+.|+.+.|.+.++...++.|.|+.||||++|+|.|+|.||..||..||.+.+++. .+.||.+.+|+
T Consensus 288 ~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GK 367 (1101)
T KOG0895|consen 288 AKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGK 367 (1101)
T ss_pred HHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCce
Confidence 345555677888999999999999999999999999999999999999999999999999999988 57999999999
Q ss_pred EEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCcc-ccHHHHHHHHHHhhcCC
Q psy3655 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPA-LTISKVLLSICSLLTDC 147 (194)
Q Consensus 88 icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~-~ti~~iL~~I~~ll~~p 147 (194)
||+++| .+|.+.. .+.|+|. .++.++|.+||.++.+.
T Consensus 368 VcLslL-gTwtg~~----------------------~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 368 VCLSLL-GTWTGSR----------------------REKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred EEeeee-eeccccc----------------------ccCCCccccchhhhhhhhhhhhccc
Confidence 999999 8998764 7899999 89999999999998865
No 24
>KOG0896|consensus
Probab=99.12 E-value=1.7e-10 Score=90.36 Aligned_cols=84 Identities=33% Similarity=0.623 Sum_probs=72.7
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCC-CcEEecCcccCCCCCCCcccccccccc
Q psy3655 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTPFYCSILCLD 112 (194)
Q Consensus 34 ~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~-G~icl~~l~~~w~~~~~~~~~~~~~~~ 112 (194)
+..|.++|.||+.|.|++.+|.++|...++||..||.++|.+++--+.|++. |.|....++
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~------------------ 99 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDIT------------------ 99 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccc------------------
Confidence 6789999999999999999999999999999999999999999988888855 566553331
Q ss_pred CCCcceeccccCCCCCccccHHHHHHHHHHhhc
Q psy3655 113 LNQGVICLDILKDNWSPALTISKVLLSICSLLT 145 (194)
Q Consensus 113 ~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~ 145 (194)
+ .++|+-.+++..+|.++...+.
T Consensus 100 --~--------L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 100 --V--------LARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred --h--------hhcccccchhhHHHHhhhHHHH
Confidence 1 6889999999999999986554
No 25
>KOG0897|consensus
Probab=98.51 E-value=1.6e-07 Score=71.89 Aligned_cols=94 Identities=21% Similarity=0.351 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCCCCCeeeeecccc-ccccCCCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccH
Q psy3655 55 FLDIHFSPEYPFKPPKVTFRTRIY-HCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTI 133 (194)
Q Consensus 55 ~~~i~fp~~YP~~pP~i~f~t~i~-HPnV~~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti 133 (194)
-+.+.|++|||+.||.+|-..+.. .--|-.+|.||+.+|. .++|+.++++
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-----------------------------~qgwssay~V 64 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-----------------------------KQGWSSAYEV 64 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-----------------------------cccccchhhH
Confidence 467789999999999998765432 1223356999999995 8999999999
Q ss_pred HHHHHHHHHhhcCCC--CCCcccHHHHHHhccccchHHHHHHHHHHH
Q psy3655 134 SKVLLSICSLLTDCN--PADPLVAKHSDTVSTKQGRTRSDVQTMDQT 178 (194)
Q Consensus 134 ~~iL~~I~~ll~~p~--~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~ 178 (194)
+.++.+|...+..-. ...+++.+.. +|..++-.+.|...++...
T Consensus 65 e~vi~qiaatlVkG~~ri~~~a~k~sk-~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 65 ERVIMQIAATLVKGGARIEFPAEKSSK-LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred HHHHHHHHHHhhccceeEecCcchhhh-HhhHHHHHHHHHHHHHHHH
Confidence 999999999988633 4556666544 6664444566666665544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.30 E-value=3.2e-06 Score=66.17 Aligned_cols=67 Identities=31% Similarity=0.657 Sum_probs=59.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeeeccc---cccccCCCCcEEe---cCcccCCCCCCCccccccccccCCCcceecccc
Q psy3655 50 EGGVFFLDIHFSPEYPFKPPKVTFRTRI---YHCNINSQGVICL---DILKDNWSPALTPFYCSILCLDLNQGVICLDIL 123 (194)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~i~f~t~i---~HPnV~~~G~icl---~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (194)
.|+.|.+.|.+|++||..||.|....+. +=|||+.+|.+|+ ...
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~------------------------------ 83 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELV------------------------------ 83 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcc------------------------------
Confidence 7899999999999999999999988654 5799999999999 333
Q ss_pred CCCCCccccHHHHHHHHHHhhcC
Q psy3655 124 KDNWSPALTISKVLLSICSLLTD 146 (194)
Q Consensus 124 ~~~W~P~~ti~~iL~~I~~ll~~ 146 (194)
-+.|.|.-++.++|.++..+|.+
T Consensus 84 ~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 84 LDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred cCccCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999884
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.71 E-value=6.3e-05 Score=58.28 Aligned_cols=79 Identities=24% Similarity=0.510 Sum_probs=54.9
Q ss_pred CceeEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeeeeecccc-----ccccCCCCcEEecCcccCCCCCCCccc
Q psy3655 33 NLYEWVSTILGPPGSVYEGGVFF--LDIHFSPEYPFKPPKVTFRTRIY-----HCNINSQGVICLDILKDNWSPALTPFY 105 (194)
Q Consensus 33 n~~~W~~~I~Gp~~t~Y~gg~f~--~~i~fp~~YP~~pP~i~f~t~i~-----HPnV~~~G~icl~~l~~~w~~~~~~~~ 105 (194)
.+..-.++|. =.|+|..|. +.|-+|++||.+||.+....... +.+|+++|+|.++.|
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL------------ 94 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL------------ 94 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH------------
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh------------
Confidence 4555666664 258888885 56668999999999998765532 449999999999888
Q ss_pred cccccccCCCcceeccccCCCCCc-cccHHHHHHHHHHhhcC
Q psy3655 106 CSILCLDLNQGVICLDILKDNWSP-ALTISKVLLSICSLLTD 146 (194)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~~~~W~P-~~ti~~iL~~I~~ll~~ 146 (194)
++|.+ ..++.+++..++..|.+
T Consensus 95 -------------------~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 95 -------------------QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp -------------------HT--TTTS-HHHHHHHHHHCCCH
T ss_pred -------------------ccCCCCCCCHHHHHHHHHHHHhH
Confidence 46766 67899999999888774
No 28
>KOG2391|consensus
Probab=96.81 E-value=0.0025 Score=57.30 Aligned_cols=81 Identities=20% Similarity=0.425 Sum_probs=61.0
Q ss_pred CceeEEEEEeCCCCCCCCCcEEEEEE--EcCCCCCCCCCeeeeecc-----ccccccCCCCcEEecCcccCCCCCCCccc
Q psy3655 33 NLYEWVSTILGPPGSVYEGGVFFLDI--HFSPEYPFKPPKVTFRTR-----IYHCNINSQGVICLDILKDNWSPALTPFY 105 (194)
Q Consensus 33 n~~~W~~~I~Gp~~t~Y~gg~f~~~i--~fp~~YP~~pP~i~f~t~-----i~HPnV~~~G~icl~~l~~~w~~~~~~~~ 105 (194)
+++...++|. .+|.|..|.+=| -+.+.||..||.+..-.. --|-+|+++|.|-++.|
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL------------ 114 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL------------ 114 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh------------
Confidence 3444555553 578888887555 469999999999866543 13899999999999998
Q ss_pred cccccccCCCcceeccccCCCCCcc-ccHHHHHHHHHHhhcCCC
Q psy3655 106 CSILCLDLNQGVICLDILKDNWSPA-LTISKVLLSICSLLTDCN 148 (194)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~~~~W~P~-~ti~~iL~~I~~ll~~p~ 148 (194)
..|.|. +.+..++..+.+.|.++.
T Consensus 115 -------------------h~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 115 -------------------HNWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred -------------------ccCCCccchHHHHHHHHHHHhcCCC
Confidence 467655 678888888888887644
No 29
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.18 E-value=0.14 Score=37.42 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCCCceeEEEEEe--CCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccc
Q psy3655 30 IGDNLYEWVSTIL--GPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI 77 (194)
Q Consensus 30 ~~~n~~~W~~~I~--Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 77 (194)
...+...+.+.+. ....+.-....+++.++||++||..+|.|...+..
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 25 ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3445555666662 22344455678999999999999999999877654
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=93.91 E-value=0.07 Score=43.41 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=50.2
Q ss_pred EEEEEcCCCCCCCCCeeeeecccc---ccccCCC-----CcEEecCcccCCCCCCCccccccccccCCCcceeccccCCC
Q psy3655 55 FLDIHFSPEYPFKPPKVTFRTRIY---HCNINSQ-----GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDN 126 (194)
Q Consensus 55 ~~~i~fp~~YP~~pP~i~f~t~i~---HPnV~~~-----G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (194)
.+.|.|+.+||..+|.+.++-..| +||++.. ..+|+.--. -.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-----------------------------~~e 106 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-----------------------------WSE 106 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-----------------------------HHH
Confidence 366899999999999877776654 5788865 678986431 577
Q ss_pred CCccccHHHHHHHHHHhhcC
Q psy3655 127 WSPALTISKVLLSICSLLTD 146 (194)
Q Consensus 127 W~P~~ti~~iL~~I~~ll~~ 146 (194)
|.+..++..+|..|..-|.+
T Consensus 107 ~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 107 WRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred hhhccCHHHHHHHHHHHHHH
Confidence 99999999999999888774
No 31
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=92.27 E-value=0.22 Score=40.01 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCCCCCCeeeeeccc-cccccCCCCcEEecCc
Q psy3655 54 FFLDIHFSPEYPFKPPKVTFRTRI-YHCNINSQGVICLDIL 93 (194)
Q Consensus 54 f~~~i~fp~~YP~~pP~i~f~t~i-~HPnV~~~G~icl~~l 93 (194)
|.+++.+|..||..||.|..-.-. --.-.+-.|+||++.=
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TT
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecc
Confidence 445556699999999999764321 0122334688888643
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=91.96 E-value=0.93 Score=32.72 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 50 EGGVFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
....+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=91.94 E-value=1.3 Score=34.63 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=63.1
Q ss_pred CeeccCCCCCceeEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE--EecCc---c-c
Q psy3655 24 FISPPSIGDNLYEWVSTILG--PPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI--CLDIL---K-D 95 (194)
Q Consensus 24 ~i~~~p~~~n~~~W~~~I~G--p~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i--cl~~l---~-~ 95 (194)
|+.++...+.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|.+.+..+-.... ..|.| |-+.. . .
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 4555555566666765 544 56777999999999999999999999988876633211 11223 32221 1 1
Q ss_pred CCCCCCCccccccccccCCCcceeccccCCCCCcc-ccHHHHHHHHHHhhc
Q psy3655 96 NWSPALTPFYCSILCLDLNQGVICLDILKDNWSPA-LTISKVLLSICSLLT 145 (194)
Q Consensus 96 ~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~-~ti~~iL~~I~~ll~ 145 (194)
+|-.=. . |...|.|. -++.+.|.-|...|.
T Consensus 90 ~wQrWS-----R---------------H~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWS-----R---------------HNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeec-----C---------------CCCCCCCCCCcHHHHHHHHHHHHh
Confidence 121111 1 14679998 478888888877664
No 34
>KOG3357|consensus
Probab=67.32 E-value=6.3 Score=31.34 Aligned_cols=65 Identities=18% Similarity=0.336 Sum_probs=39.6
Q ss_pred ccCCCCCceeEEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeeeecccc-ccccCCCCcEEec
Q psy3655 27 PPSIGDNLYEWVSTILGPPGSVYEGGV----------FFLDIHFSPEYPFKPPKVTFRTRIY-HCNINSQGVICLD 91 (194)
Q Consensus 27 ~~p~~~n~~~W~~~I~Gp~~t~Y~gg~----------f~~~i~fp~~YP~~pP~i~f~t~i~-HPnV~~~G~icl~ 91 (194)
|+-..++-..|.-.=..+.||-|-|.+ |.+++.+|-.||...|.|..-.-.- ---.+-.|+||+.
T Consensus 43 vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt 118 (167)
T KOG3357|consen 43 VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLT 118 (167)
T ss_pred HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeec
Confidence 344444555565444668888888854 3445556899999999986532110 1122346899984
No 35
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=59.49 E-value=30 Score=24.02 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=41.0
Q ss_pred HHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHHHhhhcCccccc
Q psy3655 140 ICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHAESLNAKTVS 191 (194)
Q Consensus 140 I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~ 191 (194)
|+.|+..-++..-+..+|...+. +--+.|...+-+.+...|..-+.+||+
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~--~~~e~fv~~v~~~a~~lAkHr~~~tv~ 56 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLL--EIADDFVDDVVEDACRLAKHRKSDTLE 56 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 44555554555678999999999 888999999999999999998888875
No 36
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=54.55 E-value=38 Score=23.53 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=37.6
Q ss_pred HHHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHHHhhhcCccccc
Q psy3655 139 SICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHAESLNAKTVS 191 (194)
Q Consensus 139 ~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~ 191 (194)
.|+.|+..-++..-++.++..++. +=-+.|...|-..+.+.|..-++++++
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll--~laddFv~~v~~~ac~lAKhR~s~tle 54 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLL--ELADDFVDDVVSFACRLAKHRKSSTLE 54 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-SEE-
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 467777777788889999999999 888999999999999999888877765
No 37
>KOG4018|consensus
Probab=52.35 E-value=13 Score=31.76 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCCC---CCCcEEEEEEEcCCCCCCCCCeeee
Q psy3655 36 EWVSTILGPPGSV---YEGGVFFLDIHFSPEYPFKPPKVTF 73 (194)
Q Consensus 36 ~W~~~I~Gp~~t~---Y~gg~f~~~i~fp~~YP~~pP~i~f 73 (194)
.+.+.|. ...+- |.| .|.+.+.++++||..+|-+.+
T Consensus 32 ~f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 32 IFEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 3666775 33222 333 789999999999999999933
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=50.20 E-value=38 Score=30.80 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=33.4
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec-cccccc
Q psy3655 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT-RIYHCN 81 (194)
Q Consensus 34 ~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t-~i~HPn 81 (194)
...+.+.| ||.|-..+-+|.|...||..||-+.|-. .-|+|-
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 33455555 5999999999999999999999999963 347773
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=44.32 E-value=41 Score=27.32 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=9.6
Q ss_pred cccCCCCcEEecC
Q psy3655 80 CNINSQGVICLDI 92 (194)
Q Consensus 80 PnV~~~G~icl~~ 92 (194)
+||+.+|+||+..
T Consensus 98 ~NV~~~g~vC~G~ 110 (175)
T PF14460_consen 98 FNVYSNGSVCWGN 110 (175)
T ss_pred cccCCCCcEeeCC
Confidence 5777778888754
No 40
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=41.38 E-value=90 Score=21.33 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=33.7
Q ss_pred cccHHHHHHhccccchHHHHHHHHHHHHHHhhhcCccccc
Q psy3655 152 PLVAKHSDTVSTKQGRTRSDVQTMDQTLCHAESLNAKTVS 191 (194)
Q Consensus 152 p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~ 191 (194)
.++.+++..+. ++-+.|.+.+-+.+.++..+-.-||++
T Consensus 19 ris~~a~~~l~--~~~e~rl~~i~~~A~k~~~hakRktlt 56 (65)
T smart00803 19 NLSDEAAKLLA--EDVEYRIKEIVQEALKFMRHSKRTTLT 56 (65)
T ss_pred cccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 57889999999 999999999999999999988888765
No 41
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=36.07 E-value=50 Score=29.29 Aligned_cols=37 Identities=24% Similarity=0.621 Sum_probs=27.1
Q ss_pred CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeee
Q psy3655 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTF 73 (194)
Q Consensus 31 ~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f 73 (194)
++++...+..+.. +.....++|.++.+||.++|.+..
T Consensus 122 d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~ 158 (291)
T PF09765_consen 122 DDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSL 158 (291)
T ss_dssp -CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS
T ss_pred CCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeC
Confidence 4567777777762 226778999999999999997543
No 42
>KOG0309|consensus
Probab=33.46 E-value=1.4e+02 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=29.5
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC-CCCeeeeecc
Q psy3655 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPF-KPPKVTFRTR 76 (194)
Q Consensus 34 ~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~-~pP~i~f~t~ 76 (194)
-..-.+.+-+|..-.=.....++.|.||.+||. .+|+++|..+
T Consensus 448 ~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 448 DRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred cceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 344555666655443222456899999999999 4899999754
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=29.11 E-value=74 Score=24.94 Aligned_cols=25 Identities=24% Similarity=0.556 Sum_probs=22.3
Q ss_pred CcEEEEEEEcCCCCC-CCCCeeeeec
Q psy3655 51 GGVFFLDIHFSPEYP-FKPPKVTFRT 75 (194)
Q Consensus 51 gg~f~~~i~fp~~YP-~~pP~i~f~t 75 (194)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999998864
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=26.45 E-value=85 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.5
Q ss_pred CcEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 51 GGVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
.|.|.|.-.+|--||..+|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999998865
No 45
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=25.98 E-value=2e+02 Score=18.96 Aligned_cols=50 Identities=6% Similarity=0.002 Sum_probs=36.2
Q ss_pred HHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHHHhhhcCccccc
Q psy3655 140 ICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHAESLNAKTVS 191 (194)
Q Consensus 140 I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~ 191 (194)
|+.++..-....-.+.||..++. .--+.|....-..+...+..-+.|||+
T Consensus 8 vkri~k~~~~~~~vs~ea~~~i~--~a~e~Fi~~l~~~A~~~a~~~~rkti~ 57 (65)
T PF00808_consen 8 VKRIMKSDPDVMRVSKEAVEAIA--KAAEEFIQYLAKEANEIAQRDKRKTIT 57 (65)
T ss_dssp HHHHHHHTSTTSEE-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSSEE-
T ss_pred HHHHhccCCCccchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 34444432222358889999998 888999999999999999888888875
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=24.28 E-value=2.6e+02 Score=20.03 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=30.0
Q ss_pred eeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy3655 35 YEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYH 79 (194)
Q Consensus 35 ~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 79 (194)
.+|.+.|.|+.+..-..=+=++...+-+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 58999999988876566667788888888876 77666666554
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=24.23 E-value=86 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 53 VFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
.|-+.|.+|..||...|.++|.+.
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEee
Confidence 466777889999999999999763
No 48
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=22.87 E-value=1.4e+02 Score=25.79 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=10.5
Q ss_pred cccCCCCcEEecCc
Q psy3655 80 CNINSQGVICLDIL 93 (194)
Q Consensus 80 PnV~~~G~icl~~l 93 (194)
.||+++|+||+...
T Consensus 139 fNV~~~G~VC~G~~ 152 (228)
T TIGR03737 139 FNVWSNGEICAGNA 152 (228)
T ss_pred CccCCCCeEeeCCC
Confidence 48888899998543
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.64 E-value=1.2e+02 Score=24.31 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=22.1
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeeeec
Q psy3655 51 GGVFFLDIHFSPEYP-----FKPPKVTFRT 75 (194)
Q Consensus 51 gg~f~~~i~fp~~YP-----~~pP~i~f~t 75 (194)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 8999998865
No 50
>KOG4445|consensus
Probab=20.81 E-value=1.1e+02 Score=27.82 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 50 EGGVFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
....+.+.++.++.||...|.|+...+
T Consensus 43 qyvcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 43 QYVCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred eeEEEEEEEecCCCCCCcCCceEecCC
Confidence 346889999999999999999999865
Done!