Query psy3655
Match_columns 194
No_of_seqs 137 out of 1235
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:16:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c4o_A Ubiquitin-conjugating e 100.0 9.2E-44 3.1E-48 286.9 16.1 151 1-183 10-165 (165)
2 2r0j_A Ubiquitin carrier prote 100.0 1.4E-43 4.8E-48 281.1 15.7 142 11-184 7-148 (149)
3 4gpr_A Ubiquitin-conjugating e 100.0 2.1E-43 7.3E-48 280.6 16.7 142 10-183 9-150 (151)
4 2c2v_B Ubiquitin-conjugating e 100.0 1.1E-43 3.8E-48 283.2 14.5 142 10-183 10-151 (154)
5 2ayv_A Ubiquitin-conjugating e 100.0 3.9E-43 1.3E-47 283.6 16.9 140 11-182 27-166 (166)
6 1z2u_A Ubiquitin-conjugating e 100.0 4.3E-43 1.5E-47 278.4 16.1 142 10-183 9-150 (150)
7 1yh2_A HSPC150 protein similar 100.0 5.1E-43 1.7E-47 283.3 16.9 148 11-186 10-157 (169)
8 1zdn_A Ubiquitin-conjugating e 100.0 2.4E-43 8.3E-48 282.3 14.7 140 11-182 19-158 (158)
9 1ayz_A UBC2, ubiquitin-conjuga 100.0 6.2E-43 2.1E-47 283.2 16.6 145 10-186 9-153 (169)
10 3h8k_A Ubiquitin-conjugating e 100.0 9.7E-43 3.3E-47 279.8 17.3 155 10-183 8-163 (164)
11 2aak_A UBC1, ubiquitin conjuga 100.0 7.8E-43 2.7E-47 277.4 16.2 142 10-183 9-150 (152)
12 2ucz_A UBC7, ubiquitin conjuga 100.0 1.2E-42 4.3E-47 279.6 17.3 155 10-183 9-164 (165)
13 1fxt_A Ubiquitin-conjugating e 100.0 2.8E-43 9.5E-48 279.2 12.9 142 10-183 6-149 (149)
14 1jat_A Ubiquitin-conjugating e 100.0 6.6E-43 2.3E-47 278.8 14.6 143 10-184 10-152 (155)
15 2e2c_A Ubiquitin conjugating e 100.0 5.3E-42 1.8E-46 273.8 16.9 141 10-183 14-154 (156)
16 2bep_A Ubiquitin-conjugating e 100.0 6.3E-42 2.1E-46 274.2 16.1 141 11-183 14-158 (159)
17 3rcz_B SUMO-conjugating enzyme 100.0 4.4E-42 1.5E-46 276.7 15.2 142 11-182 16-162 (163)
18 2gjd_A Ubiquitin-conjugating e 100.0 2.4E-42 8.3E-47 276.2 13.5 144 10-183 9-157 (157)
19 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-41 3.7E-46 281.5 16.7 142 10-183 53-194 (194)
20 3k9o_A Ubiquitin-conjugating e 100.0 8.5E-42 2.9E-46 282.9 15.9 143 10-184 10-156 (201)
21 1i7k_A Ubiquitin-conjugating e 100.0 6.8E-42 2.3E-46 279.6 14.8 145 10-187 35-179 (179)
22 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.2E-41 4E-46 281.2 15.7 141 11-183 38-192 (193)
23 1wzv_A Ubiquitin-conjugating e 100.0 1.9E-41 6.4E-46 270.2 15.5 143 10-184 9-152 (155)
24 3rz3_A Ubiquitin-conjugating e 100.0 2.8E-41 9.6E-46 276.3 16.6 154 10-186 12-176 (183)
25 2pwq_A Ubiquitin conjugating e 100.0 9.8E-42 3.4E-46 286.0 13.8 143 11-185 29-172 (216)
26 2grr_A Ubiquitin-conjugating e 100.0 1.8E-41 6.2E-46 272.2 14.5 145 10-184 12-161 (161)
27 2awf_A Ubiquitin-conjugating e 100.0 3.5E-41 1.2E-45 273.5 13.0 149 10-177 22-172 (172)
28 1yrv_A Ubiquitin-conjugating l 100.0 4.6E-41 1.6E-45 272.3 13.0 139 10-179 28-167 (169)
29 3fn1_B NEDD8-conjugating enzym 100.0 1.3E-40 4.4E-45 268.3 15.5 146 10-182 19-166 (167)
30 1tte_A Ubiquitin-conjugating e 100.0 6.5E-41 2.2E-45 280.9 11.4 144 10-185 7-152 (215)
31 1c4z_D UBCH7, ubiquitin conjug 100.0 1E-40 3.4E-45 265.8 11.8 143 10-184 7-150 (154)
32 3e46_A Ubiquitin-conjugating e 100.0 4.7E-40 1.6E-44 281.5 16.3 142 11-184 63-208 (253)
33 1y8x_A Ubiquitin-conjugating e 100.0 5.9E-40 2E-44 263.4 15.8 128 20-180 19-147 (160)
34 2onu_A Ubiquitin-conjugating e 100.0 4.7E-41 1.6E-45 267.7 9.0 138 12-184 9-148 (152)
35 2y9m_A Ubiquitin-conjugating e 100.0 1.4E-39 4.8E-44 263.9 16.7 142 11-183 12-168 (172)
36 2nvu_C NEDD8-conjugating enzym 100.0 1.6E-39 5.6E-44 265.6 15.2 129 20-181 39-168 (180)
37 2z5d_A Ubiquitin-conjugating e 100.0 4.3E-40 1.5E-44 269.0 8.0 130 23-185 40-171 (179)
38 4ddg_A Ubiquitin-conjugating e 100.0 1E-38 3.6E-43 288.1 15.9 145 11-187 9-153 (399)
39 1yf9_A Ubiquitin carrier prote 100.0 3.7E-39 1.3E-43 261.6 11.0 140 10-185 17-158 (171)
40 3o2u_A NEDD8-conjugating enzym 100.0 4.8E-38 1.6E-42 258.8 15.1 127 21-180 43-176 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.4E-37 4.7E-42 250.9 10.6 134 10-175 13-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 2.7E-35 9.1E-40 259.5 13.4 146 13-183 84-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 8.6E-36 2.9E-40 238.6 9.2 121 11-162 27-154 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 5.7E-35 1.9E-39 225.5 12.8 111 10-150 11-122 (125)
45 1jat_B Ubiquitin-conjugating e 100.0 5.2E-36 1.8E-40 234.9 4.9 130 1-161 2-138 (138)
46 2a4d_A Ubiquitin-conjugating e 100.0 9.3E-35 3.2E-39 233.7 10.9 121 10-158 30-156 (160)
47 2h2y_A Ubiquitin-conjugating e 100.0 3.3E-34 1.1E-38 224.4 13.1 110 10-149 25-135 (136)
48 2a7l_A Hypothetical ubiquitin- 100.0 1.7E-33 5.7E-38 220.7 12.6 107 9-145 26-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 2.4E-34 8.4E-39 233.1 7.7 121 10-158 40-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 7.2E-32 2.5E-36 221.5 11.5 113 10-151 19-131 (187)
51 1zuo_A Hypothetical protein LO 100.0 5.2E-33 1.8E-37 228.1 4.0 136 11-185 33-184 (186)
52 2z6o_A UFM1-conjugating enzyme 99.8 1.1E-22 3.7E-27 163.8 0.8 102 26-162 47-160 (172)
53 3r3q_A Suppressor protein STP2 99.7 1.8E-17 6.1E-22 133.3 8.6 95 26-151 52-161 (162)
54 3kpa_A Probable ubiquitin fold 99.5 1.6E-15 5.5E-20 120.1 -1.3 68 26-93 49-127 (168)
55 3obq_A Tumor susceptibility ge 99.4 7.2E-13 2.5E-17 104.7 7.3 81 30-146 49-138 (146)
56 2ebm_A RWD domain-containing p 92.8 0.18 6.1E-06 37.3 5.4 42 34-75 37-78 (128)
57 2yz0_A Serine/threonine-protei 91.6 0.49 1.7E-05 35.4 6.6 41 34-75 45-85 (138)
58 2day_A Ring finger protein 25; 90.7 0.71 2.4E-05 34.0 6.6 25 52-76 59-83 (128)
59 2ebk_A RWD domain-containing p 90.2 0.62 2.1E-05 34.4 5.9 41 34-75 39-79 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 87.1 0.34 1.2E-05 36.1 2.6 23 52-74 63-85 (137)
61 3zqs_A E3 ubiquitin-protein li 85.2 2.5 8.4E-05 34.1 6.9 66 31-145 22-87 (186)
62 2dax_A Protein C21ORF6; RWD do 85.1 0.62 2.1E-05 35.6 3.2 25 52-76 73-97 (152)
63 2daw_A RWD domain containing p 84.1 0.91 3.1E-05 34.9 3.8 24 53-76 76-99 (154)
64 1h3o_B Transcription initiatio 45.4 31 0.0011 23.6 4.4 42 148-191 19-60 (76)
65 2cwb_A Chimera of immunoglobul 41.9 5.4 0.00019 29.4 0.0 36 145-182 19-54 (108)
66 1taf_B TFIID TBP associated fa 20.3 1.5E+02 0.005 19.8 4.2 39 151-191 22-60 (70)
No 1
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=9.2e-44 Score=286.94 Aligned_cols=151 Identities=50% Similarity=0.807 Sum_probs=136.4
Q ss_pred CCCCCccc-----CcHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 1 MSGYRQYW-----DPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 1 ~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
|||....- -.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|
T Consensus 10 ~~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T 89 (165)
T 2c4o_A 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 89 (165)
T ss_dssp ------CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS
T ss_pred ccccccCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEec
Confidence 67776554 2345566677889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccH
Q psy3655 76 RIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVA 155 (194)
Q Consensus 76 ~i~HPnV~~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~ 155 (194)
++|||||+++|+||+++| .++|+|++||.+||.+|+++|.+|++++|+|.
T Consensus 90 ~i~HPnV~~~G~ICl~iL------------------------------~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~ 139 (165)
T 2c4o_A 90 RIYHPNINSNGSICLDIL------------------------------RSQWSPALTISKVLLSICSLLCDPNPDDPLVP 139 (165)
T ss_dssp CCCBTTBCTTCBBCCGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred CCcCCcCCCCCeEeehhh------------------------------cCCCCCcCcHHHHHHHHHHHHhCCCCCccccH
Confidence 999999999999999999 68899999999999999999999999999999
Q ss_pred HHHHHhccccchHHHHHHHHHHHHHHhh
Q psy3655 156 KHSDTVSTKQGRTRSDVQTMDQTLCHAE 183 (194)
Q Consensus 156 eaa~l~~~~~~~~~f~~~v~~~~~~~~~ 183 (194)
+||++|+ +|+++|.++|+++++++|.
T Consensus 140 ~aa~~~~--~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 140 EIARIYK--TDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp HHHHHHH--HCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhC
Confidence 9999999 9999999999999999873
No 2
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.4e-43 Score=281.05 Aligned_cols=142 Identities=37% Similarity=0.618 Sum_probs=136.7
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
+.+++++.++++.|+++.++++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||+
T Consensus 7 ~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl 86 (149)
T 2r0j_A 7 TKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICL 86 (149)
T ss_dssp HHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCC
T ss_pred HHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEec
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
++| .++|+|++|+.+||.+|++||.+|++++|+|.+||++|+ +|+++|
T Consensus 87 ~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~~~~~f 134 (149)
T 2r0j_A 87 DIL------------------------------KDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFK--QDKNDA 134 (149)
T ss_dssp GGG------------------------------TTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHH--HCHHHH
T ss_pred hhc------------------------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHH--HCHHHH
Confidence 999 788999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhh
Q psy3655 171 DVQTMDQTLCHAES 184 (194)
Q Consensus 171 ~~~v~~~~~~~~~~ 184 (194)
.++|+++++++|..
T Consensus 135 ~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 135 EHVARQWNKIYANN 148 (149)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHccC
Confidence 99999999999853
No 3
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.1e-43 Score=280.56 Aligned_cols=142 Identities=47% Similarity=0.816 Sum_probs=136.7
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|+||
T Consensus 9 L~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iC 88 (151)
T 4gpr_A 9 IQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVIC 88 (151)
T ss_dssp HHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBC
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEE
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|+++
T Consensus 89 l~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~d~~~ 136 (151)
T 4gpr_A 89 LDIL------------------------------KDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLR--ANKKQ 136 (151)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHH--HCHHH
T ss_pred cccc------------------------------cCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHH--HCHHH
Confidence 9999 789999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|.++|++|++++|.
T Consensus 137 f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 137 FEDTAREWTRMYAR 150 (151)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 4
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-43 Score=283.16 Aligned_cols=142 Identities=37% Similarity=0.555 Sum_probs=135.0
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||
T Consensus 10 L~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 89 (154)
T 2c2v_B 10 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 89 (154)
T ss_dssp HHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEE
Confidence 46678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+ +|+++
T Consensus 90 l~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~--~d~~~ 137 (154)
T 2c2v_B 90 LDIL------------------------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK--TNEAQ 137 (154)
T ss_dssp CHHH------------------------------HTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHH--HHHHH
T ss_pred chhc------------------------------cCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCHHH
Confidence 9999 688999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|.++|++|++++|.
T Consensus 138 f~~~ar~~~~~~a~ 151 (154)
T 2c2v_B 138 AIETARAWTRLYAM 151 (154)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-43 Score=283.65 Aligned_cols=140 Identities=54% Similarity=0.879 Sum_probs=134.4
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
+.+++++.++++.|+++.|+++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+
T Consensus 27 ~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL 106 (166)
T 2ayv_A 27 NKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICL 106 (166)
T ss_dssp HHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCC
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEc
Confidence 45667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
++| .++|+|++||.+||.+|++||.+|++++|+|.+||++|+ +|+++|
T Consensus 107 ~iL------------------------------~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~--~d~~~f 154 (166)
T 2ayv_A 107 DIL------------------------------KDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK--SDRMRY 154 (166)
T ss_dssp GGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HCHHHH
T ss_pred ccc------------------------------cccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHH--HCHHHH
Confidence 999 688999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q psy3655 171 DVQTMDQTLCHA 182 (194)
Q Consensus 171 ~~~v~~~~~~~~ 182 (194)
.++|++|++++|
T Consensus 155 ~~~ar~~~~~~A 166 (166)
T 2ayv_A 155 DQTAREWSQKYA 166 (166)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999885
No 6
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=4.3e-43 Score=278.39 Aligned_cols=142 Identities=54% Similarity=0.869 Sum_probs=136.0
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||
T Consensus 9 L~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 88 (150)
T 1z2u_A 9 IQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 88 (150)
T ss_dssp HHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEe
Confidence 35677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .++|+|++++.+||.+|+++|.+|++++|+|.+||++|+ +|+++
T Consensus 89 l~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~--~~~~~ 136 (150)
T 1z2u_A 89 LDIL------------------------------RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK--TDRER 136 (150)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HCHHH
T ss_pred eccc------------------------------cCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHH--HHHHH
Confidence 9999 688999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|.++|+++++++|.
T Consensus 137 f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 137 YNQLAREWTQKYAM 150 (150)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999873
No 7
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-43 Score=283.34 Aligned_cols=148 Identities=34% Similarity=0.489 Sum_probs=137.7
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
+.+++++.++++.|+++.++++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||+
T Consensus 10 ~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl 89 (169)
T 1yh2_A 10 KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICL 89 (169)
T ss_dssp HHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCC
T ss_pred HHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEec
Confidence 56777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
|+|+ +| ..++|+|++||.+||.+|++||.+|++++|+|.+||++|+ +|+++|
T Consensus 90 ~iL~-~~-------------------------~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~--~~~~~y 141 (169)
T 1yh2_A 90 DVLK-LP-------------------------PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFK--YNKPAF 141 (169)
T ss_dssp GGGS-CT-------------------------TTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HCHHHH
T ss_pred cccc-CC-------------------------cccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHH--hhHHHH
Confidence 9993 11 0278999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy3655 171 DVQTMDQTLCHAESLN 186 (194)
Q Consensus 171 ~~~v~~~~~~~~~~~~ 186 (194)
.++|+++++++|..-.
T Consensus 142 ~~~~r~~~~~~a~~~~ 157 (169)
T 1yh2_A 142 LKNARQWTEKHARQKQ 157 (169)
T ss_dssp HHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHccccc
Confidence 9999999999997543
No 8
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-43 Score=282.30 Aligned_cols=140 Identities=29% Similarity=0.467 Sum_probs=134.6
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
+.+++++.++++.|+++.++++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||+
T Consensus 19 ~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl 98 (158)
T 1zdn_A 19 YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICV 98 (158)
T ss_dssp HHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCH
T ss_pred HHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEeh
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
++| .+.|+|++++.+||.+|+++|.+|++++|+|.+||++|+ +|+++|
T Consensus 99 ~iL------------------------------~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~--~d~~~f 146 (158)
T 1zdn_A 99 NVL------------------------------KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLL--ENYEEY 146 (158)
T ss_dssp HHH------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHH--HCHHHH
T ss_pred hhc------------------------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCHHHH
Confidence 999 688999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q psy3655 171 DVQTMDQTLCHA 182 (194)
Q Consensus 171 ~~~v~~~~~~~~ 182 (194)
.++|++|++++|
T Consensus 147 ~~~a~~~t~~~A 158 (158)
T 1zdn_A 147 AARARLLTEIHG 158 (158)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-43 Score=283.19 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=138.2
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||
T Consensus 9 L~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~IC 88 (169)
T 1ayz_A 9 LMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEIC 88 (169)
T ss_dssp HHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBC
T ss_pred HHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEe
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .+.|+|+++|.+||.+|++||.+|++++|+|.+||++|+ +++++
T Consensus 89 l~iL------------------------------~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~--~d~~~ 136 (169)
T 1ayz_A 89 LDIL------------------------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFK--DHKSQ 136 (169)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHH--HCHHH
T ss_pred ehhh------------------------------ccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH--HCHHH
Confidence 9999 788999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy3655 170 SDVQTMDQTLCHAESLN 186 (194)
Q Consensus 170 f~~~v~~~~~~~~~~~~ 186 (194)
|.++|++|+++++....
T Consensus 137 y~~~~r~~~~~~a~~~~ 153 (169)
T 1ayz_A 137 YVKRVKETVEKSWEDDM 153 (169)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999997543
No 10
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=9.7e-43 Score=279.82 Aligned_cols=155 Identities=25% Similarity=0.425 Sum_probs=138.6
Q ss_pred cHHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+++.|.++ |+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|+|
T Consensus 8 L~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~i 87 (164)
T 3h8k_A 8 LMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRV 87 (164)
T ss_dssp HHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBB
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcE
Confidence 35677888889999999988766 99999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+++|+ +|.... . ..+.+.++|+|++||.+||.+|+++|.+|++++|+|.+||++|+ +|++
T Consensus 88 Cl~iL~-~~~~~~------------~----~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~--~~~~ 148 (164)
T 3h8k_A 88 CISILH-APGDDP------------M----GYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWR--DDRE 148 (164)
T ss_dssp CCGGGS-CSCSCC------------C----SCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHH--HCHH
T ss_pred eeeccc-Cccccc------------c----cccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHH--HCHH
Confidence 999994 232111 0 12333588999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhh
Q psy3655 169 RSDVQTMDQTLCHAE 183 (194)
Q Consensus 169 ~f~~~v~~~~~~~~~ 183 (194)
+|.++|+++++++++
T Consensus 149 ~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 149 QFYKIAKQIVQKSLG 163 (164)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999875
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=7.8e-43 Score=277.42 Aligned_cols=142 Identities=33% Similarity=0.573 Sum_probs=136.3
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||
T Consensus 9 L~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 88 (152)
T 2aak_A 9 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC 88 (152)
T ss_dssp HHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEe
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .++|+|++++.+||.+|+++|.+|++++|+|.+||++|+ +|+++
T Consensus 89 l~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~~~~~ 136 (152)
T 2aak_A 89 LDIL------------------------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYS--ESKRE 136 (152)
T ss_dssp CGGG------------------------------TTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHH--HCHHH
T ss_pred chhh------------------------------cCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHH--HCHHH
Confidence 9999 778999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|.++|++++++++.
T Consensus 137 y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 137 YNRRVRDVVEQSWT 150 (152)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999999875
No 12
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-42 Score=279.60 Aligned_cols=155 Identities=27% Similarity=0.463 Sum_probs=137.6
Q ss_pred cHHHHHHhhhcCCCCeeccCCC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIG-DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~-~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+++.|.+ +|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|+|
T Consensus 9 L~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~i 88 (165)
T 2ucz_A 9 LLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEV 88 (165)
T ss_dssp HHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBB
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcE
Confidence 3567778888999999998865 799999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+++|+ +|... . .+++.+.++|+|++||.+||.+|++||.+|++++|+|.+||++|+ +|++
T Consensus 89 Cl~iL~-~~~~~--~--------------~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~--~~~~ 149 (165)
T 2ucz_A 89 CISILH-SPGDD--P--------------NMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWR--DNRP 149 (165)
T ss_dssp CCGGGS-CCCSC--T--------------TSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHH--TTHH
T ss_pred eehhhC-Ccccc--c--------------cccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHH--HCHH
Confidence 999994 22110 0 012223688999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhh
Q psy3655 169 RSDVQTMDQTLCHAE 183 (194)
Q Consensus 169 ~f~~~v~~~~~~~~~ 183 (194)
+|.++|+++++++++
T Consensus 150 ~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 150 EFERQVKLSILKSLG 164 (165)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999865
No 13
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.8e-43 Score=279.17 Aligned_cols=142 Identities=37% Similarity=0.618 Sum_probs=135.3
Q ss_pred cHHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CCc
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGV 87 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G~ 87 (194)
.+.+++++.++++.|+++.+.++ |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++|||||+. +|.
T Consensus 6 L~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~ 85 (149)
T 1fxt_A 6 IMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGA 85 (149)
T ss_dssp HHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCe
Confidence 35678888889999999999887 9999999999999999999999999999999999999999999999999998 899
Q ss_pred EEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccch
Q psy3655 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGR 167 (194)
Q Consensus 88 icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~ 167 (194)
||+++| .++|+|++|+.+||.+|++||.+|++++|+|.+||++|+ +|+
T Consensus 86 iCl~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~d~ 133 (149)
T 1fxt_A 86 ICLDIL------------------------------KNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYL--RDR 133 (149)
T ss_dssp BCCHHH------------------------------HTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHH--HCS
T ss_pred EeCCcC------------------------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCH
Confidence 999999 678999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy3655 168 TRSDVQTMDQTLCHAE 183 (194)
Q Consensus 168 ~~f~~~v~~~~~~~~~ 183 (194)
++|.++|++|++++|.
T Consensus 134 ~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 134 ESFNKTAALWTRLYAS 149 (149)
T ss_dssp SHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999873
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=6.6e-43 Score=278.82 Aligned_cols=143 Identities=38% Similarity=0.594 Sum_probs=136.9
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|+++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||
T Consensus 10 L~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 89 (155)
T 1jat_A 10 IIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC 89 (155)
T ss_dssp HHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEE
Confidence 35677778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .++|+|++++.+||.+|++||.+|++++|+|.+||++|+ +|+++
T Consensus 90 l~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~~~~~ 137 (155)
T 1jat_A 90 LDVL------------------------------KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWI--KNEQG 137 (155)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHH--HCHHH
T ss_pred chhh------------------------------ccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCHHH
Confidence 9999 788999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhh
Q psy3655 170 SDVQTMDQTLCHAES 184 (194)
Q Consensus 170 f~~~v~~~~~~~~~~ 184 (194)
|.++|++|++++|..
T Consensus 138 f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 138 AKAKAREWTKLYAKK 152 (155)
T ss_dssp HHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999864
No 15
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-42 Score=273.82 Aligned_cols=141 Identities=35% Similarity=0.594 Sum_probs=134.4
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|+++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||
T Consensus 14 L~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iC 93 (156)
T 2e2c_A 14 LQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93 (156)
T ss_dssp HHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEE
Confidence 45677778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .+.|+|++++.+||.+|++||.+|++++|+|.+||++| +|+++
T Consensus 94 l~iL------------------------------~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~---~d~~~ 140 (156)
T 2e2c_A 94 LDIL------------------------------KENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW---SNQTE 140 (156)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT---TCHHH
T ss_pred Cccc------------------------------cccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh---cCHHH
Confidence 9999 78899999999999999999999999999999999999 39999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|.++|++++++++.
T Consensus 141 y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 141 YKKVLHEKYKTAQS 154 (156)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999875
No 16
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=6.3e-42 Score=274.18 Aligned_cols=141 Identities=38% Similarity=0.594 Sum_probs=132.9
Q ss_pred HHHHHHhhhc---CCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CC
Q psy3655 11 QALCTRVVYS---SLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QG 86 (194)
Q Consensus 11 ~~~~~~~~~~---~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G 86 (194)
+.+++++.++ ++.|+++.+.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+. +|
T Consensus 14 ~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G 93 (159)
T 2bep_A 14 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93 (159)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTC
T ss_pred HHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCC
Confidence 4566667663 5789999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred cEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccc
Q psy3655 87 VICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQG 166 (194)
Q Consensus 87 ~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~ 166 (194)
.||+++| .++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|
T Consensus 94 ~iCl~iL------------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~~ 141 (159)
T 2bep_A 94 AICLDIL------------------------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYK--QN 141 (159)
T ss_dssp BBCCGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HC
T ss_pred EEeChhh------------------------------hccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HC
Confidence 9999999 678999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy3655 167 RTRSDVQTMDQTLCHAE 183 (194)
Q Consensus 167 ~~~f~~~v~~~~~~~~~ 183 (194)
+++|.++|++|++++|.
T Consensus 142 ~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 142 PEMFKQTARLWAHVYAG 158 (159)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999985
No 17
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-42 Score=276.71 Aligned_cols=142 Identities=29% Similarity=0.525 Sum_probs=134.2
Q ss_pred HHHHHHhhhcCCCCeeccCCCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCC
Q psy3655 11 QALCTRVVYSSLTFISPPSIGD-----NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ 85 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~-----n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~ 85 (194)
+.+++++.++++.|+++.|.++ |+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++
T Consensus 16 ~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~ 95 (163)
T 3rcz_B 16 QEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPS 95 (163)
T ss_dssp HHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTT
T ss_pred HHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCC
Confidence 4577788899999999999876 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhcccc
Q psy3655 86 GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQ 165 (194)
Q Consensus 86 G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~ 165 (194)
|+||+++|.. .++|+|++||.+||.+|+++|.+|++++|+|.+||++|+ +
T Consensus 96 G~iCl~iL~~----------------------------~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~--~ 145 (163)
T 3rcz_B 96 GTVCLSILNE----------------------------EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFK--K 145 (163)
T ss_dssp SBBCCGGGCT----------------------------TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHH--H
T ss_pred CcEeccccCC----------------------------CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--H
Confidence 9999999941 356999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHHh
Q psy3655 166 GRTRSDVQTMDQTLCHA 182 (194)
Q Consensus 166 ~~~~f~~~v~~~~~~~~ 182 (194)
|+++|.++|++|++++|
T Consensus 146 d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 146 DKVEYEKRVRAQARENA 162 (163)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999999986
No 18
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=2.4e-42 Score=276.23 Aligned_cols=144 Identities=28% Similarity=0.514 Sum_probs=134.6
Q ss_pred cHHHHHHhhhcCCCCeeccCCC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC
Q psy3655 10 PQALCTRVVYSSLTFISPPSIG-----DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~-----~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~ 84 (194)
.+.+++++.++++.|+++.|.+ +|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.
T Consensus 9 L~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 88 (157)
T 2gjd_A 9 LQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP 88 (157)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCT
T ss_pred HHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCC
Confidence 5677888999999999998865 48999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccc
Q psy3655 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTK 164 (194)
Q Consensus 85 ~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~ 164 (194)
+|+||+++|.. .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+
T Consensus 89 ~G~iCl~iL~~----------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~-- 138 (157)
T 2gjd_A 89 SGTICLSILNE----------------------------DQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFS-- 138 (157)
T ss_dssp TSBBCCGGGCT----------------------------TTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHH--
T ss_pred CCcEeeecccC----------------------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--
Confidence 99999999931 237999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhh
Q psy3655 165 QGRTRSDVQTMDQTLCHAE 183 (194)
Q Consensus 165 ~~~~~f~~~v~~~~~~~~~ 183 (194)
+|+++|.++|+++++++|.
T Consensus 139 ~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 139 RNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp HCHHHHHHHHHHHHHHTBC
T ss_pred HCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999873
No 19
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-41 Score=281.52 Aligned_cols=142 Identities=68% Similarity=1.072 Sum_probs=135.5
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||
T Consensus 53 L~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~IC 132 (194)
T 3bzh_A 53 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVIC 132 (194)
T ss_dssp HHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBC
T ss_pred HHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCcee
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .+.|+|+++|.+||++|++||.+|++++|+|.+||++|+ +|+++
T Consensus 133 L~iL------------------------------~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~--~d~~~ 180 (194)
T 3bzh_A 133 LDIL------------------------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM--TNRAE 180 (194)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HCHHH
T ss_pred chhh------------------------------hccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHH--HCHHH
Confidence 9999 788999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhh
Q psy3655 170 SDVQTMDQTLCHAE 183 (194)
Q Consensus 170 f~~~v~~~~~~~~~ 183 (194)
|.++|++|++++|.
T Consensus 181 f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 181 HDRMARQWTKRYAT 194 (194)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999873
No 20
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=8.5e-42 Score=282.85 Aligned_cols=143 Identities=38% Similarity=0.582 Sum_probs=134.9
Q ss_pred cHHHHHHhhhc---CCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-C
Q psy3655 10 PQALCTRVVYS---SLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-Q 85 (194)
Q Consensus 10 ~~~~~~~~~~~---~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~ 85 (194)
.+.+++++.++ ++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||++ +
T Consensus 10 l~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~ 89 (201)
T 3k9o_A 10 IKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 89 (201)
T ss_dssp HHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTT
T ss_pred HHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCC
Confidence 45667777765 3679999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred CcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhcccc
Q psy3655 86 GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQ 165 (194)
Q Consensus 86 G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~ 165 (194)
|.||+++| .++|+|++||.+||.+|+++|.+|++++|+|.+||++|+ +
T Consensus 90 G~iCl~iL------------------------------~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~--~ 137 (201)
T 3k9o_A 90 GAICLDIL------------------------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYK--Q 137 (201)
T ss_dssp CBBCCGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--H
T ss_pred CeeeCccc------------------------------ccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHH--H
Confidence 99999999 789999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHHhhh
Q psy3655 166 GRTRSDVQTMDQTLCHAES 184 (194)
Q Consensus 166 ~~~~f~~~v~~~~~~~~~~ 184 (194)
|+++|.++|++|++++|..
T Consensus 138 ~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 138 NPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp CHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhccc
Confidence 9999999999999999976
No 21
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.8e-42 Score=279.61 Aligned_cols=145 Identities=34% Similarity=0.496 Sum_probs=134.4
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.||++.|+++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|+||
T Consensus 35 L~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~IC 114 (179)
T 1i7k_A 35 LQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 114 (179)
T ss_dssp HHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBC
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEE
Confidence 45567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .+.|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++
T Consensus 115 L~iL------------------------------~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~---~d~~~ 161 (179)
T 1i7k_A 115 LDIL------------------------------KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW---KNPTA 161 (179)
T ss_dssp CGGG------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT---TSHHH
T ss_pred cccC------------------------------cCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh---hCHHH
Confidence 9999 78899999999999999999999999999999999999 58999
Q ss_pred HHHHHHHHHHHHhhhcCc
Q psy3655 170 SDVQTMDQTLCHAESLNA 187 (194)
Q Consensus 170 f~~~v~~~~~~~~~~~~~ 187 (194)
|.++|++++++.++++++
T Consensus 162 f~~~v~~~v~~~~~~~~~ 179 (179)
T 1i7k_A 162 FKKYLQETYSKQVTSQEP 179 (179)
T ss_dssp HHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 999999999998887653
No 22
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-41 Score=281.20 Aligned_cols=141 Identities=38% Similarity=0.616 Sum_probs=130.9
Q ss_pred HHHHHHhhhcCC-------------CCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccc
Q psy3655 11 QALCTRVVYSSL-------------TFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI 77 (194)
Q Consensus 11 ~~~~~~~~~~~~-------------~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 77 (194)
+.+++++.++++ .||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus 38 ~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i 117 (193)
T 2f4z_A 38 LKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI 117 (193)
T ss_dssp HHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred HHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCC
Confidence 345666777776 7999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHH
Q psy3655 78 YHCNIN-SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAK 156 (194)
Q Consensus 78 ~HPnV~-~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~e 156 (194)
|||||+ .+|.||+++| .++|+|++||.+||++|++||.+|++++|+|.+
T Consensus 118 ~HPNI~~~~G~ICL~iL------------------------------~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~ 167 (193)
T 2f4z_A 118 WHPNISSQTGAICLDIL------------------------------KHEWSPALTIRTALLSIQAMLADPVPTDPQDAE 167 (193)
T ss_dssp CBTTBCTTTCBBCCGGG------------------------------TTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred ccCCCcCCCCEEECccc------------------------------cccCCCCCCHHHHHHHHHHHHhCCCCCCcccHH
Confidence 999999 5799999999 678999999999999999999999999999999
Q ss_pred HHHHhccccchHHHHHHHHHHHHHHhh
Q psy3655 157 HSDTVSTKQGRTRSDVQTMDQTLCHAE 183 (194)
Q Consensus 157 aa~l~~~~~~~~~f~~~v~~~~~~~~~ 183 (194)
||++|+ +|+++|.++|++|++++|.
T Consensus 168 aa~l~~--~d~~~f~~~ar~~t~~ya~ 192 (193)
T 2f4z_A 168 VAKMMI--ENHPLFVQTAKLWTETFAK 192 (193)
T ss_dssp HHHHHH--HCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHH--HCHHHHHHHHHHHHHHHcc
Confidence 999999 9999999999999999985
No 23
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.9e-41 Score=270.23 Aligned_cols=143 Identities=29% Similarity=0.507 Sum_probs=135.8
Q ss_pred cHHHHHHhhhcCCCCeec-cCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISP-PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~-~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+++ .++++|+++|+++|. |++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.+|.|
T Consensus 9 L~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~i 87 (155)
T 1wzv_A 9 VVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQI 87 (155)
T ss_dssp HHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBC
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeE
Confidence 356778888899999999 889999999999999 999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+++|+ .++|+|++++.+||.+|+++|.+|++++|+|.+||++|+ +|++
T Consensus 88 Cl~iL~-----------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~~~~ 136 (155)
T 1wzv_A 88 CLPIIS-----------------------------SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLT--QNPE 136 (155)
T ss_dssp CCGGGC-----------------------------TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHH--HCHH
T ss_pred eecCCC-----------------------------ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHH
Confidence 999983 578999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3655 169 RSDVQTMDQTLCHAES 184 (194)
Q Consensus 169 ~f~~~v~~~~~~~~~~ 184 (194)
+|.++|+++++++|..
T Consensus 137 ~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 137 LFRKNAEEFTLRFGVD 152 (155)
T ss_dssp HHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999864
No 24
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.8e-41 Score=276.35 Aligned_cols=154 Identities=27% Similarity=0.470 Sum_probs=136.5
Q ss_pred cHHHHHHhhhcCCCCeecc-CCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPP-SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~-p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+++. ++++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|+|
T Consensus 12 L~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~i 91 (183)
T 3rz3_A 12 LLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 91 (183)
T ss_dssp HHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBB
T ss_pred HHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcE
Confidence 4567788889999999998 888999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcc----cCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccc
Q psy3655 89 CLDILK----DNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTK 164 (194)
Q Consensus 89 cl~~l~----~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~ 164 (194)
|+++|+ +.|.+.. ..++|+|++||.+||++|++||.+||+++|+|.+||.+|+
T Consensus 92 ClsiL~~~~~~~~~~~~---------------------~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~-- 148 (183)
T 3rz3_A 92 CISILHPPVDDPQSGEL---------------------PSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR-- 148 (183)
T ss_dssp CCTTC-----------------------------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHH--
T ss_pred ehhhcCccccccccccc---------------------ccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--
Confidence 999994 1233222 1488999999999999999999999999999999999999
Q ss_pred c------chHHHHHHHHHHHHHHhhhcC
Q psy3655 165 Q------GRTRSDVQTMDQTLCHAESLN 186 (194)
Q Consensus 165 ~------~~~~f~~~v~~~~~~~~~~~~ 186 (194)
+ ++++|.++|+++++++.+...
T Consensus 149 ~~~~~~~~~~~y~~~v~~~v~~s~~~~~ 176 (183)
T 3rz3_A 149 KWKESKGKDREYTDIIRKQVLGTKVDAE 176 (183)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 6 789999999999999887553
No 25
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=9.8e-42 Score=286.01 Aligned_cols=143 Identities=38% Similarity=0.630 Sum_probs=135.8
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccC-CCCcEE
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVIC 89 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~-~~G~ic 89 (194)
+.+++++.++++.|+++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+ .+|.||
T Consensus 29 ~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~IC 108 (216)
T 2pwq_A 29 QKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAIC 108 (216)
T ss_dssp HHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBC
T ss_pred HHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEE
Confidence 4567778889999999999999999999999999999999999999999999999999999999999999999 479999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
+++| .+.|+|++||.+||++|++||.+|++++|+|.+||++|+ +|+++
T Consensus 109 L~iL------------------------------~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~--~d~~~ 156 (216)
T 2pwq_A 109 LDVL------------------------------KNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYK--ENHAL 156 (216)
T ss_dssp CHHH------------------------------HHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HCHHH
T ss_pred chhh------------------------------cccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCHHH
Confidence 9999 677999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy3655 170 SDVQTMDQTLCHAESL 185 (194)
Q Consensus 170 f~~~v~~~~~~~~~~~ 185 (194)
|.++|++|++++|..-
T Consensus 157 f~~~ar~~t~~ya~~~ 172 (216)
T 2pwq_A 157 FVKTASVWTKTFATGP 172 (216)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999753
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.8e-41 Score=272.16 Aligned_cols=145 Identities=30% Similarity=0.487 Sum_probs=134.3
Q ss_pred cHHHHHHhhhcCCCCeeccCCC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC
Q psy3655 10 PQALCTRVVYSSLTFISPPSIG-----DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~-----~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~ 84 (194)
.+.+++++.++++.|+++.|.+ +|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+.
T Consensus 12 L~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 91 (161)
T 2grr_A 12 LAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP 91 (161)
T ss_dssp HHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCT
T ss_pred HHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCC
Confidence 3567788888999999887763 68999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccc
Q psy3655 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTK 164 (194)
Q Consensus 85 ~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~ 164 (194)
+|.||+++|.. .++|+|++++.+||.+|+++|.+|++++|+|.+||++|+
T Consensus 92 ~G~iCl~iL~~----------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~-- 141 (161)
T 2grr_A 92 SGTVCLSILEE----------------------------DKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYC-- 141 (161)
T ss_dssp TSBBCCGGGCT----------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--
T ss_pred CCeEeehhcCC----------------------------CCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--
Confidence 99999999931 258999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhh
Q psy3655 165 QGRTRSDVQTMDQTLCHAES 184 (194)
Q Consensus 165 ~~~~~f~~~v~~~~~~~~~~ 184 (194)
+|+++|.++|+++++++|.+
T Consensus 142 ~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 142 QNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp HCHHHHHHHHHHHHHHTCC-
T ss_pred HCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998853
No 27
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=3.5e-41 Score=273.50 Aligned_cols=149 Identities=27% Similarity=0.551 Sum_probs=104.0
Q ss_pred cHHHHHHhhhcCCCCeeccCCC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIG-DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~-~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.||++.|.+ +|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|+|
T Consensus 22 L~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~I 101 (172)
T 2awf_A 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDV 101 (172)
T ss_dssp HHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBB
T ss_pred HHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcE
Confidence 4678888999999999998765 799999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+++|.. |.. +. ..++.+.+.|+|++||.+||.+|++||.+|++++|+|.+||++|+ +|++
T Consensus 102 ClsiL~~-~~~--d~--------------~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~--~d~~ 162 (172)
T 2awf_A 102 CISILHE-PGE--DK--------------YGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWR--EDRN 162 (172)
T ss_dssp CCGGGSC-C-------------------------CTTSCCTTCCHHHHHHHHHHHHSCC---------------------
T ss_pred ehhhcCC-ccc--cc--------------ccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHH--HCcH
Confidence 9999941 110 00 001122578999999999999999999999999999999999999 9999
Q ss_pred -HHHHHHHHH
Q psy3655 169 -RSDVQTMDQ 177 (194)
Q Consensus 169 -~f~~~v~~~ 177 (194)
+|+++||+|
T Consensus 163 ~~f~~~vr~~ 172 (172)
T 2awf_A 163 GEFKRKVARC 172 (172)
T ss_dssp ----------
T ss_pred HHHHHHHHhC
Confidence 999999875
No 28
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-41 Score=272.30 Aligned_cols=139 Identities=24% Similarity=0.452 Sum_probs=129.8
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecccccccc-CCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNI-NSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV-~~~G~i 88 (194)
.+.+++++.++++.|+++.|.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++||||| +.+|+|
T Consensus 28 L~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~I 107 (169)
T 1yrv_A 28 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 107 (169)
T ss_dssp HHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCB
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeE
Confidence 4567788888999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+++|.. .++|+|+++|.+||.+|++||.+|++++|+|.+||++|+ +|++
T Consensus 108 CL~iL~~----------------------------~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~--~d~~ 157 (169)
T 1yrv_A 108 CIDFLDN----------------------------PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILV--KDES 157 (169)
T ss_dssp CCHHHHC----------------------------GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHH--SCHH
T ss_pred eehhhcC----------------------------CcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHH--HCHH
Confidence 9999920 278999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q psy3655 169 RSDVQTMDQTL 179 (194)
Q Consensus 169 ~f~~~v~~~~~ 179 (194)
+|.++ +++++
T Consensus 158 ~y~~~-~~~v~ 167 (169)
T 1yrv_A 158 LYRTI-LRLFN 167 (169)
T ss_dssp HHHHH-HHHHC
T ss_pred HHHHH-HHHhh
Confidence 99988 77664
No 29
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.3e-40 Score=268.30 Aligned_cols=146 Identities=25% Similarity=0.350 Sum_probs=133.3
Q ss_pred cHHHHHHhhhcCCCCeecc-CCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPP-SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~-p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|+|
T Consensus 19 L~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i 97 (167)
T 3fn1_B 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEI 97 (167)
T ss_dssp HHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCB
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEE
Confidence 4567788888999999997 4568999999999 8999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcC-CCCCCcccHHHHHHhccccch
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD-CNPADPLVAKHSDTVSTKQGR 167 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~-p~~~~p~n~eaa~l~~~~~~~ 167 (194)
|+++|. .| +.. .++|+|++||.+||.+|++||.+ |++++|+|.|||++|+ +|+
T Consensus 98 Cl~iL~-~~-~~~----------------------~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~--~~~ 151 (167)
T 3fn1_B 98 CLSLLR-EH-SID----------------------GTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHL--RDK 151 (167)
T ss_dssp CCGGGS-BC-SSS----------------------TTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHH--HCH
T ss_pred echhhc-cC-CCC----------------------CCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHH--HCH
Confidence 999994 22 010 46899999999999999999999 7999999999999999 999
Q ss_pred HHHHHHHHHHHHHHh
Q psy3655 168 TRSDVQTMDQTLCHA 182 (194)
Q Consensus 168 ~~f~~~v~~~~~~~~ 182 (194)
++|.++|++|++++|
T Consensus 152 ~~f~~~~r~~~~~~A 166 (167)
T 3fn1_B 152 EDFRNKVDDYIKRYA 166 (167)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999987
No 30
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.5e-41 Score=280.86 Aligned_cols=144 Identities=36% Similarity=0.605 Sum_probs=135.8
Q ss_pred cHHHHHHhhhcCCCCeeccCCCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CCc
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGV 87 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~-n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G~ 87 (194)
.+.+++++.+++++|+++.|.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||++ +|.
T Consensus 7 L~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ 86 (215)
T 1tte_A 7 IMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGA 86 (215)
T ss_dssp HHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCE
Confidence 35677778889999999999876 4679999999999999999999999999999999999999999999999998 899
Q ss_pred EEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccch
Q psy3655 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGR 167 (194)
Q Consensus 88 icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~ 167 (194)
||+++| .+.|+|++||.+||.+|++||.+|++++|+|.+||++|+ +|+
T Consensus 87 ICL~iL------------------------------~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~--~d~ 134 (215)
T 1tte_A 87 ICLDIL------------------------------RNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYL--RDR 134 (215)
T ss_dssp CCSSTT------------------------------TCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHH--HCH
T ss_pred EECccC------------------------------CCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--HCH
Confidence 999999 788999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy3655 168 TRSDVQTMDQTLCHAESL 185 (194)
Q Consensus 168 ~~f~~~v~~~~~~~~~~~ 185 (194)
++|.++|++|++++|..-
T Consensus 135 ~~f~~~ar~~t~~yA~~~ 152 (215)
T 1tte_A 135 ESFNKTAALWTRLYASET 152 (215)
T ss_dssp HHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999999754
No 31
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1e-40 Score=265.76 Aligned_cols=143 Identities=31% Similarity=0.582 Sum_probs=132.1
Q ss_pred cHHHHHHhhhcCCCCee-ccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFIS-PPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~-~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+. +.++++|+++|+++|. |++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|.|
T Consensus 7 L~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~i 85 (154)
T 1c4z_D 7 LMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85 (154)
T ss_dssp HHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBB
T ss_pred HHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEE
Confidence 56778888888888986 5668899999999998 999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchH
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRT 168 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~ 168 (194)
|+++|+ .++|+|++|+.+||.+|++||.+|++++|+|.+||++|+ +|++
T Consensus 86 Cl~iL~-----------------------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~--~~~~ 134 (154)
T 1c4z_D 86 CLPVIS-----------------------------AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYS--KDRK 134 (154)
T ss_dssp CCTTTS-----------------------------SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHH--TCSS
T ss_pred ECCCCC-----------------------------CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHH--HhHH
Confidence 999993 478999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3655 169 RSDVQTMDQTLCHAES 184 (194)
Q Consensus 169 ~f~~~v~~~~~~~~~~ 184 (194)
+|.++|+++++++|..
T Consensus 135 ~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 135 KFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TTHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998864
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=4.7e-40 Score=281.54 Aligned_cols=142 Identities=38% Similarity=0.592 Sum_probs=133.4
Q ss_pred HHHHHHhhhc---CCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CC
Q psy3655 11 QALCTRVVYS---SLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QG 86 (194)
Q Consensus 11 ~~~~~~~~~~---~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G 86 (194)
+.+++++.++ ++.||++.|.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+. +|
T Consensus 63 ~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G 142 (253)
T 3e46_A 63 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142 (253)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTC
T ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCC
Confidence 4455666654 4679999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred cEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccc
Q psy3655 87 VICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQG 166 (194)
Q Consensus 87 ~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~ 166 (194)
.||+++| .++|+|+++|.+||++|+++|.+|++++|+|.+||++|+ +|
T Consensus 143 ~ICL~iL------------------------------~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~--~d 190 (253)
T 3e46_A 143 AICLDIL------------------------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYK--QN 190 (253)
T ss_dssp BBCCGGG------------------------------TTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHH--HC
T ss_pred eeecccc------------------------------cCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHH--HC
Confidence 9999999 789999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhhh
Q psy3655 167 RTRSDVQTMDQTLCHAES 184 (194)
Q Consensus 167 ~~~f~~~v~~~~~~~~~~ 184 (194)
+++|.++|++|++++|..
T Consensus 191 ~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 191 PEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999999976
No 33
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-40 Score=263.38 Aligned_cols=128 Identities=28% Similarity=0.538 Sum_probs=122.5
Q ss_pred cCCCCeecc-CCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEecCcccCCC
Q psy3655 20 SSLTFISPP-SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS 98 (194)
Q Consensus 20 ~~~~~i~~~-p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~~l~~~w~ 98 (194)
+++.|+++. |+++|+++|+++| ||++|+|+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 19 ~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL----- 92 (160)
T 1y8x_A 19 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL----- 92 (160)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGG-----
T ss_pred CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccc-----
Confidence 567889887 8899999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHH
Q psy3655 99 PALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQT 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~ 178 (194)
.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|+++|.++|++++
T Consensus 93 -------------------------~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~--~~~~~f~~~v~~~v 145 (160)
T 1y8x_A 93 -------------------------REDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQ--NNRRLFEQNVQRSM 145 (160)
T ss_dssp -------------------------TTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred -------------------------hhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--HCHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999 99999999999987
Q ss_pred HH
Q psy3655 179 LC 180 (194)
Q Consensus 179 ~~ 180 (194)
+.
T Consensus 146 ~~ 147 (160)
T 1y8x_A 146 RG 147 (160)
T ss_dssp HS
T ss_pred hh
Confidence 64
No 34
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=4.7e-41 Score=267.74 Aligned_cols=138 Identities=22% Similarity=0.493 Sum_probs=127.9
Q ss_pred HHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CCcEEe
Q psy3655 12 ALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVICL 90 (194)
Q Consensus 12 ~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G~icl 90 (194)
.+++++++ .|+++.+.++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+. +|.||+
T Consensus 9 kEl~~l~~---~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl 85 (152)
T 2onu_A 9 CDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCL 85 (152)
T ss_dssp HTHHHHHH---HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCH
T ss_pred HHHHhcCc---CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEec
Confidence 34455554 36888888999999999999999999999999999999999999999999999999999995 899999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHH-HHHhhcCCCCCCcccHHHHHHhccccchHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS-ICSLLTDCNPADPLVAKHSDTVSTKQGRTR 169 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~-I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~ 169 (194)
++| .++|+|++++.+||.+ |++||.+|++++|+|.+||++|+ +|+++
T Consensus 86 ~il------------------------------~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~--~d~~~ 133 (152)
T 2onu_A 86 DVI------------------------------NQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLM--KDKNI 133 (152)
T ss_dssp HHH------------------------------HHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHH--HCHHH
T ss_pred ccc------------------------------cccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCHHH
Confidence 999 6789999999999999 68999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhh
Q psy3655 170 SDVQTMDQTLCHAES 184 (194)
Q Consensus 170 f~~~v~~~~~~~~~~ 184 (194)
|.++|+++++++|..
T Consensus 134 y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 134 YEEKVKEYVKLYASK 148 (152)
T ss_dssp HHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999864
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.4e-39 Score=263.95 Aligned_cols=142 Identities=24% Similarity=0.410 Sum_probs=129.5
Q ss_pred HHHHHHhhh-c-C------CC---CeeccC-CCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec-cc
Q psy3655 11 QALCTRVVY-S-S------LT---FISPPS-IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT-RI 77 (194)
Q Consensus 11 ~~~~~~~~~-~-~------~~---~i~~~p-~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t-~i 77 (194)
+.+++++.+ . + +. ++.+.| +++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.| ++
T Consensus 12 ~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i 91 (172)
T 2y9m_A 12 VKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI 91 (172)
T ss_dssp HHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSC
T ss_pred HHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCe
Confidence 456777776 4 3 33 567777 8899999999999999999999999999999999999999999999 99
Q ss_pred cccccC-CCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHH
Q psy3655 78 YHCNIN-SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAK 156 (194)
Q Consensus 78 ~HPnV~-~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~e 156 (194)
|||||+ .+|+||+++|+ .+.|+|++|+.+||.+|++||.+|++++|+|.+
T Consensus 92 ~HPni~~~~G~iCl~iL~-----------------------------~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~ 142 (172)
T 2y9m_A 92 LHCNVKSATGEICLNILK-----------------------------PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142 (172)
T ss_dssp CCTTEETTTTEECCGGGS-----------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred ecCCCcCCCCEEeccccC-----------------------------CCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHH
Confidence 999996 78999999992 388999999999999999999999999999999
Q ss_pred HHHHhcccc-chHHHHHHHHHHHHHHhh
Q psy3655 157 HSDTVSTKQ-GRTRSDVQTMDQTLCHAE 183 (194)
Q Consensus 157 aa~l~~~~~-~~~~f~~~v~~~~~~~~~ 183 (194)
||++|+ + |+++|.++|++++++++.
T Consensus 143 aa~~~~--~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 143 IGNIIR--CGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp HHHHHT--TTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH--hCCHHHHHHHHHHHHHHHHh
Confidence 999999 8 999999999999998764
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-39 Score=265.58 Aligned_cols=129 Identities=27% Similarity=0.502 Sum_probs=123.1
Q ss_pred cCCCCeecc-CCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEecCcccCCC
Q psy3655 20 SSLTFISPP-SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS 98 (194)
Q Consensus 20 ~~~~~i~~~-p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~~l~~~w~ 98 (194)
++++|+++. |+++|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 39 ~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL----- 112 (180)
T 2nvu_C 39 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNIL----- 112 (180)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGG-----
T ss_pred CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccc-----
Confidence 467889887 8899999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHH
Q psy3655 99 PALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQT 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~ 178 (194)
.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|+++|.++|++++
T Consensus 113 -------------------------~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~--~d~~~f~~~v~~~v 165 (180)
T 2nvu_C 113 -------------------------REDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQ--NNRRLFEQNVQRSM 165 (180)
T ss_dssp -------------------------TTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHH--HCHHHHHHHHHHHH
T ss_pred -------------------------cccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--HCHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999 99999999999987
Q ss_pred HHH
Q psy3655 179 LCH 181 (194)
Q Consensus 179 ~~~ 181 (194)
+..
T Consensus 166 ~~~ 168 (180)
T 2nvu_C 166 RGG 168 (180)
T ss_dssp HSE
T ss_pred hhC
Confidence 753
No 37
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=269.01 Aligned_cols=130 Identities=27% Similarity=0.537 Sum_probs=123.7
Q ss_pred CCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CCcEEecCcccCCCCCC
Q psy3655 23 TFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPAL 101 (194)
Q Consensus 23 ~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G~icl~~l~~~w~~~~ 101 (194)
.|+++.+. +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+. +|.||+++|
T Consensus 40 ~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL-------- 110 (179)
T 2z5d_A 40 SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVI-------- 110 (179)
T ss_dssp SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHH--------
T ss_pred CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEecccc--------
Confidence 57778776 68999999999999999999999999999999999999999999999999998 899999999
Q ss_pred CccccccccccCCCcceeccccCCCCCccccHHHHHHH-HHHhhcCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHH
Q psy3655 102 TPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS-ICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLC 180 (194)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~-I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~ 180 (194)
.++|+|++++.+||.+ |++||.+|++++|+|.+||++|+ +|+++|.++|++++++
T Consensus 111 ----------------------~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~--~d~~~y~~~vr~~~~~ 166 (179)
T 2z5d_A 111 ----------------------NQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYL--HRPEEYKQKIKEYIQK 166 (179)
T ss_dssp ----------------------HHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHH--HCHHHHHHHHHHHHHH
T ss_pred ----------------------ccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHH--HCHHHHHHHHHHHHHH
Confidence 6789999999999999 99999999999999999999999 9999999999999999
Q ss_pred Hhhhc
Q psy3655 181 HAESL 185 (194)
Q Consensus 181 ~~~~~ 185 (194)
+|..-
T Consensus 167 ~a~~~ 171 (179)
T 2z5d_A 167 YATEE 171 (179)
T ss_dssp HSSHH
T ss_pred Hcccc
Confidence 99643
No 38
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1e-38 Score=288.07 Aligned_cols=145 Identities=50% Similarity=0.808 Sum_probs=138.7
Q ss_pred HHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEe
Q psy3655 11 QALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl 90 (194)
+.+++++.++++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+++|.||+
T Consensus 9 ~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl 88 (399)
T 4ddg_A 9 HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISL 88 (399)
T ss_dssp HHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCC
T ss_pred HHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeC
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHH
Q psy3655 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRS 170 (194)
Q Consensus 91 ~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f 170 (194)
++| .++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|+++|
T Consensus 89 ~il------------------------------~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~--~d~~~y 136 (399)
T 4ddg_A 89 DIL------------------------------RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK--TDREKY 136 (399)
T ss_dssp GGG------------------------------TTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHH--HCHHHH
T ss_pred ccc------------------------------ccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHH--HCHHHH
Confidence 999 789999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhhcCc
Q psy3655 171 DVQTMDQTLCHAESLNA 187 (194)
Q Consensus 171 ~~~v~~~~~~~~~~~~~ 187 (194)
.++|++|+++++.....
T Consensus 137 ~~~~~~~~~~~a~~~v~ 153 (399)
T 4ddg_A 137 NRIAREWTQKYAMGGSA 153 (399)
T ss_dssp HHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHhhccccc
Confidence 99999999999976443
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-39 Score=261.57 Aligned_cols=140 Identities=27% Similarity=0.536 Sum_probs=128.1
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCC-CCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~-~G~i 88 (194)
.+.+++++++++. ++ . .++|+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+. +|.|
T Consensus 17 L~~El~~l~~~~~-~v--~-~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~i 92 (171)
T 1yf9_A 17 REMDYMRLCNSTR-KV--Y-PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSV 92 (171)
T ss_dssp HHHHHHHHHSSSS-CE--E-ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBB
T ss_pred HHHHHHHHHhCCC-CC--C-CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeE
Confidence 3566777777764 33 3 5789999999999999999999999999999999999999999999999999995 8999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHH-HHhhcCCCCCCcccHHHHHHhccccch
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI-CSLLTDCNPADPLVAKHSDTVSTKQGR 167 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I-~~ll~~p~~~~p~n~eaa~l~~~~~~~ 167 (194)
|+++| .++|+|++++.+||.+| ++||.+|++++|+|.+||++|+ +|+
T Consensus 93 Cl~iL------------------------------~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~--~d~ 140 (171)
T 1yf9_A 93 CLDVI------------------------------NQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH--ADR 140 (171)
T ss_dssp CHHHH------------------------------HHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHH--HCH
T ss_pred ecccc------------------------------ccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HCH
Confidence 99999 67899999999999997 7999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy3655 168 TRSDVQTMDQTLCHAESL 185 (194)
Q Consensus 168 ~~f~~~v~~~~~~~~~~~ 185 (194)
++|.++|++++++++..-
T Consensus 141 ~~y~~~vr~~~~~~a~~~ 158 (171)
T 1yf9_A 141 VGFDALLREHVSTHATPQ 158 (171)
T ss_dssp HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHcChh
Confidence 999999999999998643
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=4.8e-38 Score=258.84 Aligned_cols=127 Identities=24% Similarity=0.466 Sum_probs=121.6
Q ss_pred CCCCeecc----CCCCCce---eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEecCc
Q psy3655 21 SLTFISPP----SIGDNLY---EWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 93 (194)
Q Consensus 21 ~~~~i~~~----p~~~n~~---~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~~l 93 (194)
+++++++. |+++|++ +|+++|. |++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 43 ~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL 121 (190)
T 3o2u_A 43 LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL 121 (190)
T ss_dssp CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhc
Confidence 56789887 8999999 9999997 88899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhccccchHHHHHH
Q psy3655 94 KDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVSTKQGRTRSDVQ 173 (194)
Q Consensus 94 ~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~~~~~~~~f~~~ 173 (194)
.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ +|+++|.++
T Consensus 122 ------------------------------~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~--~d~~~f~~~ 169 (190)
T 3o2u_A 122 ------------------------------REDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLC--EGEKEFAEA 169 (190)
T ss_dssp ------------------------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHH--TCHHHHHHH
T ss_pred ------------------------------cCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH--HCHHHHHHH
Confidence 789999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHH
Q psy3655 174 TMDQTLC 180 (194)
Q Consensus 174 v~~~~~~ 180 (194)
|++|++.
T Consensus 170 ar~~~~~ 176 (190)
T 3o2u_A 170 VRLTMSG 176 (190)
T ss_dssp HHHHHBT
T ss_pred HHHHHHh
Confidence 9999854
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.4e-37 Score=250.90 Aligned_cols=134 Identities=21% Similarity=0.385 Sum_probs=123.4
Q ss_pred cHHHHHHhhhcC------------CCCeeccCCCCCceeEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 10 PQALCTRVVYSS------------LTFISPPSIGDNLYEWVSTILGPPGSVYE--GGVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 10 ~~~~~~~~~~~~------------~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~--gg~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
.+.+++++++++ ..++++.++++|+++|+++|.||++|+|+ ||+|+|+|.||++||++||+|+|.|
T Consensus 13 L~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t 92 (167)
T 4ds2_A 13 IIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVT 92 (167)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESS
T ss_pred HHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 456677777766 67899999999999999999999999999 9999999999999999999999999
Q ss_pred cccccccCCCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHH-HHHHhhcC--CCCCCc
Q psy3655 76 RIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLL-SICSLLTD--CNPADP 152 (194)
Q Consensus 76 ~i~HPnV~~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~-~I~~ll~~--p~~~~p 152 (194)
++|||||+.+|.||+++| .++|+|++++.++|+ .|++|+.+ |++++|
T Consensus 93 ~i~HPnv~~~G~iCl~il------------------------------~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p 142 (167)
T 4ds2_A 93 PVYSPLVTGEGGICDRMV------------------------------NDFWTPDQHASDVIKLVLDRVFSQYKSRRDDD 142 (167)
T ss_dssp CCCCSSCCTTSCCCTHHH------------------------------HTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCC
T ss_pred CcccccCCCCCEEEcccC------------------------------cCCCCCCCChHHHHHHHHHHHHhcCCCCCcch
Confidence 999999999999999999 689999999999765 57778775 899999
Q ss_pred ccHHHHHHhccccchHHHHHHHH
Q psy3655 153 LVAKHSDTVSTKQGRTRSDVQTM 175 (194)
Q Consensus 153 ~n~eaa~l~~~~~~~~~f~~~v~ 175 (194)
+|.|||++|+ +|+++|.++||
T Consensus 143 ~n~eaa~l~~--~d~~~f~~~vr 163 (167)
T 4ds2_A 143 VNPEARHYLE--KFPQDFAARVR 163 (167)
T ss_dssp CCHHHHHHHH--HCHHHHHHHHT
T ss_pred HhHHHHHHHH--HCHHHHHHHHh
Confidence 9999999999 99999999997
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=259.46 Aligned_cols=146 Identities=24% Similarity=0.391 Sum_probs=128.9
Q ss_pred HHHHhhhcCCC----CeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecc-----ccccccC
Q psy3655 13 LCTRVVYSSLT----FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR-----IYHCNIN 83 (194)
Q Consensus 13 ~~~~~~~~~~~----~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~-----i~HPnV~ 83 (194)
+++++.++++. ++.+.++++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+
T Consensus 84 El~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~ 163 (323)
T 3ceg_A 84 EAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY 163 (323)
T ss_dssp HHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBC
T ss_pred HHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCC
Confidence 44445556665 45677889999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccc-cHHHHHHHHHHhhc--CCCCCCcccHHH--H
Q psy3655 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPAL-TISKVLLSICSLLT--DCNPADPLVAKH--S 158 (194)
Q Consensus 84 ~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~-ti~~iL~~I~~ll~--~p~~~~p~n~ea--a 158 (194)
.+|+||+++| .+|.+.. .+.|+|++ ||.+||++|++||. +|++++|+|.++ +
T Consensus 164 ~~G~ICLsiL-~~~~g~~----------------------~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~ 220 (323)
T 3ceg_A 164 NDGKVCLSIL-NTWHGRP----------------------EEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGT 220 (323)
T ss_dssp TTCBBCCGGG-TSSCCCG----------------------GGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTS
T ss_pred cCCeEechhh-ccccCCC----------------------cCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHh
Confidence 9999999999 4564322 57899999 89999999999996 677799999987 5
Q ss_pred HHhccccchHHHHHHHHHHHHHHhh
Q psy3655 159 DTVSTKQGRTRSDVQTMDQTLCHAE 183 (194)
Q Consensus 159 ~l~~~~~~~~~f~~~v~~~~~~~~~ 183 (194)
.++. +|+++|.++|++++++++.
T Consensus 221 ~~~~--~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 221 PSGT--QSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHTT
T ss_pred hhhh--hhHHHHHHHHHHHHHHHhh
Confidence 7888 9999999999999999874
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=8.6e-36 Score=238.62 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=109.0
Q ss_pred HHHHHHhhhc-CCCCeeccCCC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCC
Q psy3655 11 QALCTRVVYS-SLTFISPPSIG-D--NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQG 86 (194)
Q Consensus 11 ~~~~~~~~~~-~~~~i~~~p~~-~--n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G 86 (194)
+.+++++.++ +++++++.+.. + |+++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+++|
T Consensus 27 ~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G 106 (156)
T 2q0v_A 27 LDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCG 106 (156)
T ss_dssp HHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTS
T ss_pred HHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCC
Confidence 4456667767 78899887743 3 599999999999999999999999999999999999999999999999999999
Q ss_pred cE---EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhc
Q psy3655 87 VI---CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVS 162 (194)
Q Consensus 87 ~i---cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~ 162 (194)
+| |+++| . +|+|++++.+||.+|++||.+|++++|+|.+||.+|.
T Consensus 107 ~icisCL~iL------------------------------~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~ 154 (156)
T 2q0v_A 107 RVIKNNLHIL------------------------------K-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYS 154 (156)
T ss_dssp BBCGGGSHHH------------------------------H-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC-
T ss_pred eEehhhcccc------------------------------c-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhh
Confidence 99 67766 4 4999999999999999999999999999999999987
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-35 Score=225.52 Aligned_cols=111 Identities=30% Similarity=0.531 Sum_probs=101.5
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccc-cccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI-YHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~HPnV~~~G~i 88 (194)
.+.++++++++++.|+++.++++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++ |||||+.+|+|
T Consensus 11 L~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~i 90 (125)
T 2fo3_A 11 IQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDI 90 (125)
T ss_dssp HHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBB
T ss_pred HHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEE
Confidence 46678888889999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCC
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 150 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~ 150 (194)
|+++| .++|+|++|+.+||.+|++||.+|+..
T Consensus 91 Cl~iL------------------------------~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 91 CLSLL------------------------------GDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp CCGGG------------------------------TTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred Echhc------------------------------CCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 99999 788999999999999999999998865
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=5.2e-36 Score=234.91 Aligned_cols=130 Identities=27% Similarity=0.390 Sum_probs=110.9
Q ss_pred CCCCCcccCcHHHHHHhhhc-CCCCeeccCCC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 1 MSGYRQYWDPQALCTRVVYS-SLTFISPPSIG-D--NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~p~~-~--n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
||.-.+..-.+.++++++++ ++.++++.+.. + |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 44433444456677788877 78899887743 3 59999999999999999999999999999999999999999999
Q ss_pred ccccccCCC-CcE--EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcc
Q psy3655 77 IYHCNINSQ-GVI--CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 153 (194)
Q Consensus 77 i~HPnV~~~-G~i--cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~ 153 (194)
+|||||+.+ |+| |+++| . +|+|++|+++||.+|+++|.+|++++|+
T Consensus 82 i~HPnv~~~~G~i~~cL~~l------------------------------~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~ 130 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTL------------------------------R-DWKRAYTMETLLLDLRKEMATPANKKLR 130 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHH------------------------------H-TCCTTCCHHHHHHHHHHHHTSHHHHTSC
T ss_pred cccCCEeCCCCEEeeecccC------------------------------C-CCCCcCcHHHHHHHHHHHHcCCCCCCCC
Confidence 999999987 999 78776 3 7999999999999999999999999999
Q ss_pred cHHHHHHh
Q psy3655 154 VAKHSDTV 161 (194)
Q Consensus 154 n~eaa~l~ 161 (194)
|.+||.+|
T Consensus 131 ~~~~~~~y 138 (138)
T 1jat_B 131 QPKEGETF 138 (138)
T ss_dssp CCCTTCBC
T ss_pred CcchhhcC
Confidence 99998764
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=9.3e-35 Score=233.65 Aligned_cols=121 Identities=26% Similarity=0.393 Sum_probs=107.4
Q ss_pred cHHHHHHhhhcCCCC-eeccC-CCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccC-C
Q psy3655 10 PQALCTRVVYSSLTF-ISPPS-IGDN--LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-S 84 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~-i~~~p-~~~n--~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~-~ 84 (194)
.+.++++++++++.| +++.+ +++| +++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 30 L~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~ 109 (160)
T 2a4d_A 30 LLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 109 (160)
T ss_dssp HHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTT
T ss_pred HHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECC
Confidence 345667777777777 77765 5555 99999999999999999999999999999999999999999999999999 6
Q ss_pred CCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhc-CCCCCCcccHHHH
Q psy3655 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLT-DCNPADPLVAKHS 158 (194)
Q Consensus 85 ~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~-~p~~~~p~n~eaa 158 (194)
+|+||+++|. . .++|+|++|+++||.+|++||. +||+++|+|.|||
T Consensus 110 ~G~ICl~iL~---------------------------~-~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 110 NGVVDPRAIS---------------------------V-LAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TCBBCGGGSH---------------------------H-HHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CCEEehhhcC---------------------------C-ccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 8999999982 0 1789999999999999999995 6999999999997
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.3e-34 Score=224.35 Aligned_cols=110 Identities=29% Similarity=0.526 Sum_probs=103.1
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccc-cccccCCCCcE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI-YHCNINSQGVI 88 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~HPnV~~~G~i 88 (194)
.+.+++++.++++.|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++ |||||+.+|+|
T Consensus 25 L~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~I 104 (136)
T 2h2y_A 25 IQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDI 104 (136)
T ss_dssp HHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCB
T ss_pred HHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEE
Confidence 35566777788999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred EecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCC
Q psy3655 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149 (194)
Q Consensus 89 cl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~ 149 (194)
|+++| .++|+|++++.+||.+|++||.+|+.
T Consensus 105 Cl~iL------------------------------~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 105 CLSVL------------------------------GDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CCGGG------------------------------TTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred ECccc------------------------------cCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99999 68899999999999999999999864
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-33 Score=220.75 Aligned_cols=107 Identities=36% Similarity=0.653 Sum_probs=100.2
Q ss_pred CcHHHHHHhhhcCCCCeecc--CCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecccc--ccccCC
Q psy3655 9 DPQALCTRVVYSSLTFISPP--SIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIY--HCNINS 84 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~--p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~--HPnV~~ 84 (194)
-.+.++++++++++.|+++. ++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++| ||||+.
T Consensus 26 RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~ 105 (136)
T 2a7l_A 26 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS 105 (136)
T ss_dssp HHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCC
Confidence 45677888888999999854 88999999999999999999999999999999999999999999999999 999999
Q ss_pred CCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhc
Q psy3655 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLT 145 (194)
Q Consensus 85 ~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~ 145 (194)
+|+||+|+| .++|+|++|+++||.+|++||+
T Consensus 106 ~G~ICL~iL------------------------------~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 106 NGHICLSIL------------------------------TEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp TCBBCCGGG------------------------------TTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCeEEchhc------------------------------CCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999 7889999999999999999984
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=233.13 Aligned_cols=121 Identities=26% Similarity=0.393 Sum_probs=107.3
Q ss_pred cHHHHHHhhhcCCCC-eeccC-CCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccC-C
Q psy3655 10 PQALCTRVVYSSLTF-ISPPS-IGDN--LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-S 84 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~-i~~~p-~~~n--~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~-~ 84 (194)
.+.+++++.+++..| +++.+ +++| +++|+++|.||++|+|+||+|+|+|.||++||++||+|+|.|++|||||+ .
T Consensus 40 L~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~ 119 (170)
T 2hlw_A 40 LLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 119 (170)
T ss_dssp HHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSS
T ss_pred HHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCC
Confidence 455666777777777 66765 5554 99999999999999999999999999999999999999999999999999 6
Q ss_pred CCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhc-CCCCCCcccHHHH
Q psy3655 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLT-DCNPADPLVAKHS 158 (194)
Q Consensus 85 ~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~-~p~~~~p~n~eaa 158 (194)
+|+||+++|. + .++|+|++||.+||.+|++||. +||+++|+|.|||
T Consensus 120 ~G~ICl~iL~---------------------------~-~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 120 NGVVDPRAIS---------------------------V-LAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SCBBCTTTCH---------------------------H-HHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEEEhhhcC---------------------------C-CCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 8999999982 0 1789999999999999999997 5999999999987
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=7.2e-32 Score=221.46 Aligned_cols=113 Identities=27% Similarity=0.570 Sum_probs=97.2
Q ss_pred cHHHHHHhhhcCCCCeeccCCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEE
Q psy3655 10 PQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~ic 89 (194)
.+.+++++.++++.||++.|+++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ ||||+++|+||
T Consensus 19 L~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~IC 96 (187)
T 2f4w_A 19 LKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLC 96 (187)
T ss_dssp HHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEe
Confidence 3556777888999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCC
Q psy3655 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151 (194)
Q Consensus 90 l~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~ 151 (194)
+++|. .+.+.|+|+++|.+||.+|++||.+|+++.
T Consensus 97 L~iL~---------------------------~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 97 LSITD---------------------------FHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp -------------------------------------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred eeccc---------------------------cCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 99982 125789999999999999999999999863
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=5.2e-33 Score=228.15 Aligned_cols=136 Identities=21% Similarity=0.405 Sum_probs=117.6
Q ss_pred HHHHHHhhhcC---CCCeeccCCCCCceeEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 11 QALCTRVVYSS---LTFISPPSIGDNLYEWVSTILGP-PGSVYEG-----------GVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 11 ~~~~~~~~~~~---~~~i~~~p~~~n~~~W~~~I~Gp-~~t~Y~g-----------g~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
..+++++.+++ ++++++.|.++|+++|+++|.|| ++|+|+| |+|+|+|.||++||++||+|+|.+
T Consensus 33 ~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~t 112 (186)
T 1zuo_A 33 MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL 112 (186)
T ss_dssp HHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEE
T ss_pred HHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeC
Confidence 44566666666 68899999999999999999998 9999998 899999999999999999999999
Q ss_pred ccccc-ccCCCCcEEecCcccCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCccc
Q psy3655 76 RIYHC-NINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 154 (194)
Q Consensus 76 ~i~HP-nV~~~G~icl~~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n 154 (194)
++||| ||+.+|.||+++|. .++|+|+++|.+||++|++||.+|+..
T Consensus 113 pi~hPnnV~~~G~ICL~iL~-----------------------------~~~WsP~~ti~~VL~sI~slL~~p~a~---- 159 (186)
T 1zuo_A 113 PVLSGGYVLGGGALCMELLT-----------------------------KQGWSSAYSIESVIMQINATLVKGKAR---- 159 (186)
T ss_dssp SCEESTTBCGGGBBCCGGGS-----------------------------TTTCCTTSCHHHHHHHHHHHHHHTTCE----
T ss_pred CccCCCccCCCCcEEeccCC-----------------------------CCCCCCcCcHHHHHHHHHHHHcCCChh----
Confidence 99999 69999999999993 478999999999999999999998542
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHhhhc
Q psy3655 155 AKHSDTVSTKQGRTRSDVQTMDQTLCHAESL 185 (194)
Q Consensus 155 ~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~ 185 (194)
..+. .++++|.+++++++.+.+...
T Consensus 160 ----~~~~--~~~~~Y~~~~~~~~~~~~~~~ 184 (186)
T 1zuo_A 160 ----VQFG--ANKNQYNLARAQQSYNSIVQI 184 (186)
T ss_dssp ----ECTT--CCTTCCCHHHHHHHHHHHHHH
T ss_pred ----Hhhc--cCHHHHhHHHHHHHHHHHHHh
Confidence 2344 567888888888887776543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.84 E-value=1.1e-22 Score=163.82 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=87.8
Q ss_pred eccCCCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeeeecc-ccccccCCCCcEEecCcc
Q psy3655 26 SPPSIGDNLYEWVSTILGPPGSVYEGG----------VFFLDIHFSPEYPFKPPKVTFRTR-IYHCNINSQGVICLDILK 94 (194)
Q Consensus 26 ~~~p~~~n~~~W~~~I~Gp~~t~Y~gg----------~f~~~i~fp~~YP~~pP~i~f~t~-i~HPnV~~~G~icl~~l~ 94 (194)
++.+..+|++.|.+++.||.||+|+|| .|+++|.||++||.+||+|+|.+. +|||||+.+|+||+|+|.
T Consensus 47 ~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~ 126 (172)
T 2z6o_A 47 YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHF 126 (172)
T ss_dssp HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTH
T ss_pred HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhc
Confidence 477888999999999999999999999 999999999999999999999998 999999999999999983
Q ss_pred -cCCCCCCCccccccccccCCCcceeccccCCCCCccccHHHHHHHHHHhhcCCCCCCcccHHHHHHhc
Q psy3655 95 -DNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVAKHSDTVS 162 (194)
Q Consensus 95 -~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~~p~~~~p~n~eaa~l~~ 162 (194)
+.| ..|+|+++|..+|.- -.+.++..|+..++.
T Consensus 127 kp~W---------------------------s~~~P~~~IahiL~l--------gl~pwla~eip~lv~ 160 (172)
T 2z6o_A 127 KPLW---------------------------ARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ 160 (172)
T ss_dssp HHHH---------------------------HHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred cccc---------------------------cccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence 101 245699999999843 234578888887776
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.71 E-value=1.8e-17 Score=133.26 Aligned_cols=95 Identities=24% Similarity=0.383 Sum_probs=81.1
Q ss_pred eccCCCCCceeEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCeeeeecc----------cc-ccccCCCCcEEec
Q psy3655 26 SPPSIGDNLYEWVSTILGPPGSVYEGGV---FFLDIHFSPEYPFKPPKVTFRTR----------IY-HCNINSQGVICLD 91 (194)
Q Consensus 26 ~~~p~~~n~~~W~~~I~Gp~~t~Y~gg~---f~~~i~fp~~YP~~pP~i~f~t~----------i~-HPnV~~~G~icl~ 91 (194)
.+...+|...++-+++.|.-..+|+|+. |.+.|.||++||++||.|.|.++ ++ |||||++|+||++
T Consensus 52 ~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lp 131 (162)
T 3r3q_A 52 RVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALP 131 (162)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCG
T ss_pred eeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCc
Confidence 3445567667777777777779999999 88999999999999999988651 77 9999999999999
Q ss_pred CcccCCCCCCCccccccccccCCCcceeccccCCCCCc-cccHHHHHHHHHHhhcCCCCCC
Q psy3655 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSP-ALTISKVLLSICSLLTDCNPAD 151 (194)
Q Consensus 92 ~l~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~P-~~ti~~iL~~I~~ll~~p~~~~ 151 (194)
+| . +|+| +.++.++|.+|+++|.+|+++.
T Consensus 132 yL------------------------------~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 132 IL------------------------------H-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp GG------------------------------G-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cc------------------------------c-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 98 3 5999 5899999999999999999874
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.48 E-value=1.6e-15 Score=120.13 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=60.8
Q ss_pred eccCCCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeeeecc-ccccccCCCCcEEecCc
Q psy3655 26 SPPSIGDNLYEWVSTILGPPGSVYEGG----------VFFLDIHFSPEYPFKPPKVTFRTR-IYHCNINSQGVICLDIL 93 (194)
Q Consensus 26 ~~~p~~~n~~~W~~~I~Gp~~t~Y~gg----------~f~~~i~fp~~YP~~pP~i~f~t~-i~HPnV~~~G~icl~~l 93 (194)
+|.-..++-..|...+.|+.||+|.|+ .|++++.||.+||.+||+|+|.+. .+|||++.+|+||+|++
T Consensus 49 yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 49 YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT
T ss_pred HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc
Confidence 344444566789999999999999999 999999999999999999999995 89999999999999875
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.38 E-value=7.2e-13 Score=104.73 Aligned_cols=81 Identities=20% Similarity=0.402 Sum_probs=71.0
Q ss_pred CCCCceeEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCeeeeecc------ccccccCCCCcEEecCcccCCCCCC
Q psy3655 30 IGDNLYEWVSTILGPPGSVYEGGVFFL--DIHFSPEYPFKPPKVTFRTR------IYHCNINSQGVICLDILKDNWSPAL 101 (194)
Q Consensus 30 ~~~n~~~W~~~I~Gp~~t~Y~gg~f~~--~i~fp~~YP~~pP~i~f~t~------i~HPnV~~~G~icl~~l~~~w~~~~ 101 (194)
...+++.|.++|. ..|+|+.|.+ .|-||++||++||.| |.++ ..|||||.+|+||++.|
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL-------- 115 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYL-------- 115 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHH--------
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccc--------
Confidence 4468999999997 5799999995 899999999999999 6655 48999999999999998
Q ss_pred CccccccccccCCCcceeccccCCCCCc-cccHHHHHHHHHHhhcC
Q psy3655 102 TPFYCSILCLDLNQGVICLDILKDNWSP-ALTISKVLLSICSLLTD 146 (194)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~W~P-~~ti~~iL~~I~~ll~~ 146 (194)
.+ |++ ..++.+++.+++..|.+
T Consensus 116 ----------------------~~-W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 116 ----------------------HE-WKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp ----------------------HT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred ----------------------cc-cCCCCCCHHHHHHHHHHHHhh
Confidence 33 876 68999999999999985
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.85 E-value=0.18 Score=37.32 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=28.8
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 34 ~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
...+.+.|....+..-..-.+.+.|.||++||.+||.+...+
T Consensus 37 ~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 37 PPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp SCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 355666665222222234478999999999999999998755
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.49 Score=35.40 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=29.7
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 34 ~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
...+.+.|....+ .=..-.+.+.+.+|++||..+|.|....
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4567777763222 1123478899999999999999998765
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=90.69 E-value=0.71 Score=33.95 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=21.9
Q ss_pred cEEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 52 GVFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
-.+.+.|.+|++||..+|.|...+.
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 4788999999999999999987763
No 59
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.24 E-value=0.62 Score=34.42 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=29.2
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec
Q psy3655 34 LYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRT 75 (194)
Q Consensus 34 ~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t 75 (194)
...+.+.|.. .+..=..-.+.+.+.+|++||..+|.|...+
T Consensus 39 ~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 39 GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4678888863 2210012478999999999999999997663
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=87.07 E-value=0.34 Score=36.09 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.5
Q ss_pred cEEEEEEEcCCCCCCCCCeeeee
Q psy3655 52 GVFFLDIHFSPEYPFKPPKVTFR 74 (194)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~i~f~ 74 (194)
-.+.+.|.||++||..+|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 46899999999999999999874
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=85.21 E-value=2.5 Score=34.10 Aligned_cols=66 Identities=9% Similarity=0.206 Sum_probs=49.3
Q ss_pred CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeeccccccccCCCCcEEecCcccCCCCCCCcccccccc
Q psy3655 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILC 110 (194)
Q Consensus 31 ~~n~~~W~~~I~Gp~~t~Y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnV~~~G~icl~~l~~~w~~~~~~~~~~~~~ 110 (194)
..++....+++.. =.|....++|.++.+||.++|.+...-+. |.
T Consensus 22 d~~~~~i~l~~~D-----~~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~----------------------------- 65 (186)
T 3zqs_A 22 DTCFSTIKLKAED-----ASGREHLITLKLKAKYPAESPDYFVDFPV--PF----------------------------- 65 (186)
T ss_dssp CTTSSEEEEEEEC-----TTSCEEEEEEECCTTTTTSCCEEECCCSS--CC-----------------------------
T ss_pred cCCccEEEEEEEe-----CCCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-----------------------------
Confidence 3568888888873 35788899999999999999977554443 11
Q ss_pred ccCCCcceeccccCCCCCccccHHHHHHHHHHhhc
Q psy3655 111 LDLNQGVICLDILKDNWSPALTISKVLLSICSLLT 145 (194)
Q Consensus 111 ~~~~~g~~~~~~~~~~W~P~~ti~~iL~~I~~ll~ 145 (194)
.-.|+|..++.+++.+.+..+.
T Consensus 66 -------------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 66 -------------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp -------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred -------------ccccCCCccHHHHHHHHHHHHH
Confidence 3468888888888887766655
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=85.14 E-value=0.62 Score=35.60 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.7
Q ss_pred cEEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 52 GVFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
-.+.+.|.+|++||..||.|.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999987764
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=84.08 E-value=0.91 Score=34.94 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCCCCCCeeeeecc
Q psy3655 53 VFFLDIHFSPEYPFKPPKVTFRTR 76 (194)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~i~f~t~ 76 (194)
.+.++|.+|++||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 789999999999999999986653
No 64
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=45.36 E-value=31 Score=23.64 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=35.7
Q ss_pred CCCCcccHHHHHHhccccchHHHHHHHHHHHHHHhhhcCccccc
Q psy3655 148 NPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHAESLNAKTVS 191 (194)
Q Consensus 148 ~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~ 191 (194)
++...++.++..++. +=-+.|...|-..+.+.|..-++++++
T Consensus 19 dp~~~ld~~vee~ll--~lADdFV~~V~~~ac~lAKhR~s~~le 60 (76)
T 1h3o_B 19 DPNEQLDEDVEEMLL--QIADDFIESVVTAACQLARHRKSSTLE 60 (76)
T ss_dssp CSSCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred CCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 455678999999888 888999999999999999888887764
No 65
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=41.87 E-value=5.4 Score=29.35 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred cCCCCCCcccHHHHHHhccccchHHHHHHHHHHHHHHh
Q psy3655 145 TDCNPADPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHA 182 (194)
Q Consensus 145 ~~p~~~~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~ 182 (194)
+-.....|.++++|++|. ++++.|...++.|+.-.+
T Consensus 19 ~~~~~~~PQDA~VA~qy~--~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 19 KGETTTEAVDAATAEKVF--KQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp --------------------------------------
T ss_pred cCcccCCchhHHHHHHHH--hchhccccccccccccCc
Confidence 334456799999999999 999999999999995554
No 66
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=20.25 E-value=1.5e+02 Score=19.78 Aligned_cols=39 Identities=5% Similarity=0.054 Sum_probs=33.8
Q ss_pred CcccHHHHHHhccccchHHHHHHHHHHHHHHhhhcCccccc
Q psy3655 151 DPLVAKHSDTVSTKQGRTRSDVQTMDQTLCHAESLNAKTVS 191 (194)
Q Consensus 151 ~p~n~eaa~l~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~ 191 (194)
..++.++++.+. ++-+.+.+.+-+.+.+++.+-.-|+++
T Consensus 22 ~~lsddaa~~LA--~dvEyr~~eI~qeA~kfmrHakRk~Lt 60 (70)
T 1taf_B 22 GSLSDDAAKELA--EDVSIKLKRIVQDAAKFMNHAKRQKLS 60 (70)
T ss_dssp CCBCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence 358899999999 999999999999999999888777764
Done!