RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3655
(194 letters)
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 186 bits (473), Expect = 2e-60
Identities = 92/134 (68%), Positives = 95/134 (70%), Gaps = 35/134 (26%)
Query: 27 PPSI-----GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCN 81
PP+ GDN+YEW STILGPPGSVYEGGVFFLDI F+PEYPFKPPKVTFRTRIYHCN
Sbjct: 65 PPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCN 124
Query: 82 INSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSIC 141
INSQGVICLDILK DNWSPALTISKVLLSIC
Sbjct: 125 INSQGVICLDILK------------------------------DNWSPALTISKVLLSIC 154
Query: 142 SLLTDCNPADPLVA 155
SLLTDCNPADPLV
Sbjct: 155 SLLTDCNPADPLVG 168
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 182 bits (463), Expect = 2e-59
Identities = 49/131 (37%), Positives = 62/131 (47%), Gaps = 29/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I + +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S
Sbjct: 31 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 90
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDILKD W+ A+T+ VLLS+ +LL
Sbjct: 91 V-----------------------------TGAICLDILKDQWAAAMTLRTVLLSLQALL 121
Query: 145 TDCNPADPLVA 155
P DP A
Sbjct: 122 AAAEPDDPQDA 132
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 182 bits (464), Expect = 2e-59
Identities = 69/131 (52%), Positives = 78/131 (59%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
S +GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS
Sbjct: 39 CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDIL+ WSPALTISKVLLSICSLL
Sbjct: 99 NGSICLDILR------------------------------SQWSPALTISKVLLSICSLL 128
Query: 145 TDCNPADPLVA 155
D NP DPLV
Sbjct: 129 CDPNPDDPLVP 139
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 181 bits (462), Expect = 2e-59
Identities = 71/131 (54%), Positives = 79/131 (60%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
S +GD+L+ W +TI+GPP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS
Sbjct: 24 CSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 83
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDIL+ WSPALTISKVLLSICSLL
Sbjct: 84 NGSICLDILR------------------------------SQWSPALTISKVLLSICSLL 113
Query: 145 TDCNPADPLVA 155
D NP DPLV
Sbjct: 114 CDPNPDDPLVP 124
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 182 bits (464), Expect = 3e-59
Identities = 54/131 (41%), Positives = 68/131 (51%), Gaps = 29/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
+S +G +++ W I GP G+ YEGG F LDI P+YP+ PPK+ F T+I+H NI+S
Sbjct: 65 VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISS 124
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
Q G ICLDILK WSPALTI LLSI ++L
Sbjct: 125 QT-----------------------------GAICLDILKHEWSPALTIRTALLSIQAML 155
Query: 145 TDCNPADPLVA 155
D P DP A
Sbjct: 156 ADPVPTDPQDA 166
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 181 bits (461), Expect = 5e-59
Identities = 71/131 (54%), Positives = 80/131 (61%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
S +GD+++ W +TI+GP S Y GGVFFL+IHF +YPFKPPKV F T+IYH NINS
Sbjct: 41 CSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS 100
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
QG ICLDILK D WSPALTISKVLLSI SLL
Sbjct: 101 QGAICLDILK------------------------------DQWSPALTISKVLLSISSLL 130
Query: 145 TDCNPADPLVA 155
TD NP DPLV
Sbjct: 131 TDPNPDDPLVP 141
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 183 bits (465), Expect = 5e-59
Identities = 54/131 (41%), Positives = 66/131 (50%), Gaps = 29/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I N +EWV I GP G+ YEGG F L I +YP+ PPK+ F T+I+H NI+S
Sbjct: 43 IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISS 102
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
Q G ICLD+LK+ WSPALTI LLSI +LL
Sbjct: 103 QT-----------------------------GAICLDVLKNEWSPALTIRTALLSIQALL 133
Query: 145 TDCNPADPLVA 155
+D P DP A
Sbjct: 134 SDPQPDDPQDA 144
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 180 bits (459), Expect = 6e-59
Identities = 50/131 (38%), Positives = 64/131 (48%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I + +N + I GP G+ YEGG + L++ +YP +PPKV F T+IYH NI+
Sbjct: 21 IMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 80
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDILK D WSPAL I VLLSI +LL
Sbjct: 81 LGRICLDILK------------------------------DKWSPALQIRTVLLSIQALL 110
Query: 145 TDCNPADPLVA 155
+ P DPL +
Sbjct: 111 SSPEPDDPLDS 121
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 180 bits (459), Expect = 8e-59
Identities = 52/131 (39%), Positives = 64/131 (48%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I+ DNL + TI GP S YE G+F L+++ +YP + PKV F T+IYH NI+
Sbjct: 25 ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLD+LK NWSPAL I VLLSI +LL
Sbjct: 85 LGRICLDVLK------------------------------TNWSPALQIRTVLLSIQALL 114
Query: 145 TDCNPADPLVA 155
NP DPL
Sbjct: 115 ASPNPNDPLAN 125
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 180 bits (459), Expect = 3e-58
Identities = 49/131 (37%), Positives = 62/131 (47%), Gaps = 29/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I + +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S
Sbjct: 28 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 87
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDILKD W+ A+T+ VLLS+ +LL
Sbjct: 88 V-----------------------------TGAICLDILKDQWAAAMTLRTVLLSLQALL 118
Query: 145 TDCNPADPLVA 155
P DP A
Sbjct: 119 AAAEPDDPQDA 129
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 179 bits (455), Expect = 4e-58
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 26/131 (19%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I+ D + + + ILG + YE GVF L++ YPF+PP++ F T IYH NI+S
Sbjct: 24 ITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 83
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLD+LK K W P+L I+ VL SI L+
Sbjct: 84 AGRICLDVLKLPP--------------------------KGAWRPSLNIATVLTSIQLLM 117
Query: 145 TDCNPADPLVA 155
++ NP DPL+A
Sbjct: 118 SEPNPDDPLMA 128
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 178 bits (454), Expect = 4e-58
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I ++L + TI GP G+ Y GG+F + + ++P PPK F T+I+H N+ +
Sbjct: 33 IKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA 92
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G IC+++LK +W+ L I VLL+I LL
Sbjct: 93 NGEICVNVLK------------------------------RDWTAELGIRHVLLTIKCLL 122
Query: 145 TDCNPADPLVA 155
NP L
Sbjct: 123 IHPNPESALNE 133
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 178 bits (453), Expect = 6e-58
Identities = 50/131 (38%), Positives = 59/131 (45%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I N + I GP S +EGG F L++ EYP PKV F T+IYH N++
Sbjct: 25 IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 84
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDILK D WSPAL I VLLSI +LL
Sbjct: 85 LGRICLDILK------------------------------DKWSPALQIRTVLLSIQALL 114
Query: 145 TDCNPADPLVA 155
+ NP DPL
Sbjct: 115 SAPNPDDPLAN 125
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 177 bits (452), Expect = 1e-57
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 30/126 (23%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
GDNL++WV+T+ GP +VYE + L + F +YP+KPP V F T +H N++ G IC
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDILK +NW+ + + +LLS+ SLL + N
Sbjct: 94 LDILK------------------------------ENWTASYDVRTILLSLQSLLGEPNN 123
Query: 150 ADPLVA 155
A PL A
Sbjct: 124 ASPLNA 129
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 180 bits (458), Expect = 2e-57
Identities = 49/131 (37%), Positives = 62/131 (47%), Gaps = 29/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I + +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S
Sbjct: 80 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 139
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDILKD W+ A+T+ VLLS+ +LL
Sbjct: 140 V-----------------------------TGAICLDILKDQWAAAMTLRTVLLSLQALL 170
Query: 145 TDCNPADPLVA 155
P DP A
Sbjct: 171 AAAEPDDPQDA 181
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 177 bits (450), Expect = 3e-57
Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 30/126 (23%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
DNL++WV TI G G+VYE + L + F YP+ P V F T YH N+++QG I
Sbjct: 55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 114
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDILK + WS + +LLSI SLL + N
Sbjct: 115 LDILK------------------------------EKWSALYDVRTILLSIQSLLGEPNI 144
Query: 150 ADPLVA 155
PL
Sbjct: 145 DSPLNT 150
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 174 bits (443), Expect = 2e-56
Identities = 48/124 (38%), Positives = 63/124 (50%), Gaps = 29/124 (23%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+++ T LGPPG+ YEGG F +DI EYPFKPPK+ F T++YH NI+S
Sbjct: 29 SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSV------ 82
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
G ICLDILK+ WSP +T+ L+S+ +LL P D
Sbjct: 83 -----------------------TGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119
Query: 152 PLVA 155
P A
Sbjct: 120 PQDA 123
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 176 bits (447), Expect = 3e-56
Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 29/124 (23%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+++ T LGPPG+ YEGG F +DI EYPFKPPK+ F T++YH NI+S
Sbjct: 30 SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSV------ 83
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
G ICLDIL++ WSP +T+ L+S+ +LL P D
Sbjct: 84 -----------------------TGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 152 PLVA 155
P A
Sbjct: 121 PQDA 124
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 173 bits (440), Expect = 5e-56
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 30/126 (23%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+N+ W + I GP + ++GG F L + FS +YP KPP V F +R++H NI + G IC
Sbjct: 29 QDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ + WSP ++ +L SI SLL D NP
Sbjct: 89 LDILQ------------------------------NQWSPIYDVAAILTSIQSLLCDPNP 118
Query: 150 ADPLVA 155
P +
Sbjct: 119 NSPANS 124
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 171 bits (435), Expect = 4e-55
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
G +L W I G P + +EGG++ L + F EYP +PPK F ++H N+
Sbjct: 35 CKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP 94
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G +CL IL + ++ W PA+TI ++LL I LL
Sbjct: 95 SGTVCLSILNE----------------------------EEGWKPAITIKQILLGIQDLL 126
Query: 145 TDCNPADPLVA 155
D N A P
Sbjct: 127 DDPNIASPAQT 137
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 170 bits (434), Expect = 5e-55
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
NL W I P Y+ G F ++I+F EYPFKPPK+TF+T+IYH NI+ +G
Sbjct: 26 QVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ 84
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
+CL ++ +NW PA +V+ S+ +L+ D
Sbjct: 85 VCLPVIS-----------------------------AENWKPATKTDQVIQSLIALVNDP 115
Query: 148 NPADPLVA 155
P PL A
Sbjct: 116 QPEHPLRA 123
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 170 bits (434), Expect = 8e-55
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 30/126 (23%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+ DN+ W + I+GP + YE G F L + F EYP KPP V F + ++H N+ + G IC
Sbjct: 29 LPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEIC 88
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
LDIL+ + W+P ++ +L SI SL D NP
Sbjct: 89 LDILQ------------------------------NRWTPTYDVASILTSIQSLFNDPNP 118
Query: 150 ADPLVA 155
A P
Sbjct: 119 ASPANV 124
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 170 bits (433), Expect = 1e-54
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 32/133 (24%)
Query: 26 SPPSIG--DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
S + D + E+ GP G+ YE G + L + +YPFK P + F RI H N++
Sbjct: 27 STRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD 86
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVL-LSICS 142
+ G +CLD++ W+P + + + +
Sbjct: 87 ERS-----------------------------GSVCLDVINQTWTPMYQLENIFDVFLPQ 117
Query: 143 LLTDCNPADPLVA 155
LL NP+DPL
Sbjct: 118 LLRYPNPSDPLNV 130
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 170 bits (432), Expect = 2e-54
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 32/133 (24%)
Query: 26 SPPS--IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
S I L E+V GP G+ YEGGV+ + + +YPFK P + F +I+H NI+
Sbjct: 40 SKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS-ICS 142
G +CLD++ W+ ++ + S +
Sbjct: 100 EA-----------------------------SGTVCLDVINQTWTALYDLTNIFESFLPQ 130
Query: 143 LLTDCNPADPLVA 155
LL NP DPL
Sbjct: 131 LLAYPNPIDPLNG 143
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 169 bits (430), Expect = 2e-54
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 30/128 (23%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
S N+ W + + P Y F L I F PEYPFKPP + F T+IYH N++ G
Sbjct: 28 SSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQ 86
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
ICL I+ +NW P +VL ++ L+
Sbjct: 87 ICLPIIS-----------------------------SENWKPCTKTCQVLEALNVLVNRP 117
Query: 148 NPADPLVA 155
N +PL
Sbjct: 118 NIREPLRM 125
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 168 bits (427), Expect = 5e-54
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 28/128 (21%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
P NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
+CL IL+++ +W PA+TI ++LL I LL +
Sbjct: 95 VCLSILEED----------------------------KDWRPAITIKQILLGIQELLNEP 126
Query: 148 NPADPLVA 155
N P A
Sbjct: 127 NIQSPAQA 134
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 167 bits (426), Expect = 7e-54
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 28/128 (21%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
+L +W + I G G+ + GGV+ + + + EYP KPPKV F YH N+ G
Sbjct: 32 ADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGT 91
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
ICL IL + +W PA+T+ +++L + LL
Sbjct: 92 ICLSILNE----------------------------DQDWRPAITLKQIVLGVQDLLDSP 123
Query: 148 NPADPLVA 155
NP P
Sbjct: 124 NPNSPAQE 131
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 168 bits (427), Expect = 9e-54
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ-GVI 88
+ +++ EW I G SV++G VF L IHF+ EY + PP V F T +H N++ G
Sbjct: 48 VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 107
Query: 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCN 148
C+D L + + W+ T+S +LL++ +L++
Sbjct: 108 CIDFLDNP----------------------------EKWNTNYTLSSILLALQVMLSNPV 139
Query: 149 PADPLVA 155
+P+
Sbjct: 140 LENPVNL 146
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 175 bits (444), Expect = 1e-53
Identities = 68/131 (51%), Positives = 77/131 (58%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
S +GD+++ W +TI+GP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS
Sbjct: 23 CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G I LDIL+ WSPALTISKVLLSICSLL
Sbjct: 83 NGSISLDILR------------------------------SQWSPALTISKVLLSICSLL 112
Query: 145 TDCNPADPLVA 155
D NP DPLV
Sbjct: 113 CDPNPDDPLVP 123
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 167 bits (425), Expect = 1e-53
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 30/127 (23%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+ ++ GP G+ YEGG++ + + +YPF P + F ++ H N++
Sbjct: 24 NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA---- 79
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVL-LSICSLLTDCN 148
G +CLD++ W+P ++ V + + LLT N
Sbjct: 80 -------------------------SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPN 114
Query: 149 PADPLVA 155
P+DPL +
Sbjct: 115 PSDPLNS 121
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 167 bits (425), Expect = 2e-53
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 32/131 (24%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
IS D+L + I P Y+ G F YP PPKV T +YH NI+
Sbjct: 46 ISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
+G + L+IL+ ++W P LTI+ ++ + L
Sbjct: 104 EGNVALNILR------------------------------EDWKPVLTINSIIYGLQYLF 133
Query: 145 TDCNPADPLVA 155
+ NP DPL
Sbjct: 134 LEPNPEDPLNK 144
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 165 bits (421), Expect = 6e-53
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 25/127 (19%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
N + P Y+GG F + Y PPKV T+I+H NI G IC
Sbjct: 39 PDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEIC 98
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD-CN 148
L +L+++ I W+P T+ V+ + SL TD N
Sbjct: 99 LSLLREH------------------------SIDGTGWAPTRTLKDVVWGLNSLFTDLLN 134
Query: 149 PADPLVA 155
DPL
Sbjct: 135 FDDPLNI 141
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 166 bits (421), Expect = 8e-53
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
++LY W I+GPP ++YEGGVF + F +YP +PPK+ F T I+H N++ G
Sbjct: 41 LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGD 100
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
+C+ IL P + + ++ W P T+ +++S+ S+L D
Sbjct: 101 VCISILH---EPGEDKYGY--------------EKPEERWLPIHTVETIMISVISMLADP 143
Query: 148 NPADPLVA 155
N P
Sbjct: 144 NGDSPANV 151
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 164 bits (418), Expect = 1e-52
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 32/131 (24%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
IS D+L + I P Y+ G F YP PPKV T +YH NI+
Sbjct: 26 ISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
+G +CL+IL+ ++W P LTI+ ++ + L
Sbjct: 84 EGNVCLNILR------------------------------EDWKPVLTINSIIYGLQYLF 113
Query: 145 TDCNPADPLVA 155
+ NP DPL
Sbjct: 114 LEPNPEDPLNK 124
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 164 bits (418), Expect = 2e-52
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 31/130 (23%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTF-RTRIYHCNINSQ- 85
P +L +W + I GP + YE F + I YP PPK++F + I HCN+ S
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 86 GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLT 145
G ICL+ILK + W+P + + ++ LL
Sbjct: 101 GEICLNILK-----------------------------PEEWTPVWDLLHCVHAVWRLLR 131
Query: 146 DCNPADPLVA 155
+ PL
Sbjct: 132 EPVCDSPLDV 141
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 164 bits (416), Expect = 3e-52
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
++ P +N +EW + I+GP + +E GVF + F +YP PPK+ F ++H NI
Sbjct: 23 IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
G +C+ IL + + + WSP ++ K+LLS+ S+
Sbjct: 83 PDGRVCISILHAPGDDPMGYESSA-----------------ERWSPVQSVEKILLSVVSM 125
Query: 144 LTDCNPADPLVA 155
L + N
Sbjct: 126 LAEPNDESGANV 137
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 162 bits (412), Expect = 5e-52
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 31/120 (25%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR-IYHCNINSQGVIC 89
N+ W+ +G ++Y V+ + I F YP KPP V F + H ++ S
Sbjct: 46 PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS----- 100
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
G ICL +L D+++P+L+IS ++LSI S+L+
Sbjct: 101 -------------------------NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 164 bits (417), Expect = 5e-52
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 34/135 (25%)
Query: 25 ISPPSIGDNLYEW----VSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHC 80
++ + D+ + I+ P Y G ++ F+ YP +PPKV +I+H
Sbjct: 49 LNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHP 108
Query: 81 NINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI 140
NI+ +G +CL+IL+ ++WSPAL + ++ +
Sbjct: 109 NIDLKGNVCLNILR------------------------------EDWSPALDLQSIITGL 138
Query: 141 CSLLTDCNPADPLVA 155
L + NP DPL
Sbjct: 139 LFLFLEPNPNDPLNK 153
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 162 bits (411), Expect = 5e-52
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR-IYHCNIN 83
+ +N+ W+ +G ++Y V+ L I F +YP KPP V F + H ++
Sbjct: 26 CTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 85
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
S G ICL +L D+++P+L+IS ++LSI S+
Sbjct: 86 S------------------------------NGDICLSLLGDDYNPSLSISGLVLSIISM 115
Query: 144 LTDCNPAD 151
L+
Sbjct: 116 LSSAKEKK 123
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 161 bits (409), Expect = 4e-51
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
++ P +N++ W I GPP + Y GVF + F +YP PPK+TF I H NI
Sbjct: 24 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
G +C+ IL ++ ++ WSP ++ K+LLS+ S+
Sbjct: 84 PNGEVCISILHSPGDDPNMY-----------------ELAEERWSPVQSVEKILLSVMSM 126
Query: 144 LTDCNPADPLVA 155
L++ N
Sbjct: 127 LSEPNIESGANI 138
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 161 bits (410), Expect = 4e-51
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
+LY W I GPP + YEGG F + F +YP+ PP F T+++H NI G
Sbjct: 31 LVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGD 90
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
+C+ IL P P + + W+P + +LLS+ SLL +
Sbjct: 91 VCISILH---PPVDDPQSGE--------------LPSERWNPTQNVRTILLSVISLLNEP 133
Query: 148 NPADPLVA 155
N P
Sbjct: 134 NTFSPANV 141
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 159 bits (404), Expect = 8e-51
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 30/125 (24%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+ +W TILGPP S +E ++ L I P YP PPKVTF ++I +N
Sbjct: 37 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT----- 91
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKD-NWSPALTISKVLLSICSLLTDCNPA 150
G + D +W A T+ +LL + +
Sbjct: 92 ------------------------GEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANK 127
Query: 151 DPLVA 155
Sbjct: 128 KLRQP 132
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 157 bits (399), Expect = 1e-49
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 35/138 (25%)
Query: 23 TFISPPSIGDNLYEWVSTILGPPGSVY--EGGVFFLDIHFSPEYPFKPPKVTFRTRIYHC 80
+ D +Y W+ + P SVY G + L + FS +YP +PP V F T +Y
Sbjct: 38 STAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSP 97
Query: 81 NINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI 140
+ +G IC ++ D W+P S V+ +
Sbjct: 98 LVTGEGGICDRMVN------------------------------DFWTPDQHASDVIKLV 127
Query: 141 CSLL---TDCNPADPLVA 155
+ D +
Sbjct: 128 LDRVFSQYKSRRDDDVNP 145
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 158 bits (401), Expect = 1e-49
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+ N+ EW + GP + YEGG + + F E+PFKPP + T N++ +C
Sbjct: 39 LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTR--LC 96
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
L D D W+PA ++S +L + S + + P
Sbjct: 97 L---------------------------SITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
Query: 150 ADPLVA 155
+
Sbjct: 130 TLGSIE 135
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 155 bits (395), Expect = 2e-49
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 32/124 (25%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTR--IYHCN 81
++ S+ +++ +W+ + G PG++YEG F L FS YPF P+V F H +
Sbjct: 43 TLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH 102
Query: 82 INSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSIC 141
+ S G ICL IL ++WSPAL++ V LSI
Sbjct: 103 VYS------------------------------NGHICLSILTEDWSPALSVQSVCLSII 132
Query: 142 SLLT 145
S+L+
Sbjct: 133 SMLS 136
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 154 bits (392), Expect = 1e-48
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 27/122 (22%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
L W I+GPP ++YE ++ L I P+YP PP V F T+I +NS +
Sbjct: 56 MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV-- 113
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
+ +L W + +I VL + L+
Sbjct: 114 ------------------------DPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMK 148
Query: 152 PL 153
Sbjct: 149 LP 150
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 152 bits (387), Expect = 6e-48
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 29/124 (23%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90
L W TI G PG+V+E ++ L I YP PP V F T+I +++ G +
Sbjct: 51 DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIK 110
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSI-CSLLTDCNP 149
+ L ILK+ W+ TI +L+S+ +L+ N
Sbjct: 111 NN---------------------------LHILKN-WNRNYTIETILISLRQEMLSSANK 142
Query: 150 ADPL 153
P
Sbjct: 143 RLPQ 146
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 153 bits (388), Expect = 6e-48
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 27/122 (22%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
L W I+GPP ++YE ++ L I P+YP PP V F T+I +NS +
Sbjct: 66 MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV-- 123
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
+ +L W + +I VL + L+
Sbjct: 124 ------------------------DPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMK 158
Query: 152 PL 153
Sbjct: 159 LP 160
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 127 bits (321), Expect = 1e-37
Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 42/144 (29%)
Query: 25 ISPPSIGDNLYEWVSTILG-PPGSVYEGGV-----------FFLDIHFSPEYPFKPPKVT 72
S I D+LY+W + P S + L+ F +PF PP V
Sbjct: 50 YSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVR 109
Query: 73 FRTRIYHCN-INSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPAL 131
+ + G +C+++L K WS A
Sbjct: 110 VVLPVLSGGYVLGGGALCMELLT-----------------------------KQGWSSAY 140
Query: 132 TISKVLLSICSLLTDCNPADPLVA 155
+I V++ I + L A
Sbjct: 141 SIESVIMQINATLVKGKARVQFGA 164
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 126 bits (317), Expect = 1e-35
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 31/145 (21%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHC-----NINSQ 85
+ L I GP + Y G F D++F +YP PP V T H N+ +
Sbjct: 106 EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 86 GVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPAL-TISKVLLSICSLL 144
G +CL IL ++ W+P + +VL+S+ SL+
Sbjct: 166 GKVCLSILNTWHGRP-----------------------EEKWNPQTSSFLQVLVSVQSLI 202
Query: 145 TDCNP--ADPLVAKHSDTVSTKQGR 167
P +P + T S Q
Sbjct: 203 LVAEPYFNEPGYERSRGTPSGTQSS 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-05
Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 54/193 (27%)
Query: 16 RVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEY-----PFKPPK 70
+ V SL NL V + GPP S+Y + PF K
Sbjct: 364 KQVEISL-VNGA----KNL---VVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 71 VTFRTR---I---YHCNI--NSQGVICLDILKDN--WSPA-L-TPFYCSILCLDLNQGV- 117
+ F R + +H ++ + +I D++K+N ++ + P Y + DL + +
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLS 472
Query: 118 ------ICLDILKD--NW--SPALTISKVL------LSICSLLTDCN---------PADP 152
I I++ W + + +L S +LT N A
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 153 LVAKHSDTVSTKQ 165
L D KQ
Sbjct: 533 LDINPDDDYGFKQ 545
Score = 30.4 bits (68), Expect = 0.42
Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 79/184 (42%)
Query: 1 MSGYRQY------WDPQA-LCTRVVYS-SLTFI---SPPSI--------GDNLYEWVSTI 41
M Y+ W+ +A + Y S+ I +P ++ G + E S +
Sbjct: 1633 MDLYKTSKAAQDVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 42 L---GPPGSVYEGGVFF-LDIHFSPEYPFKPPKVT-FRTRIYHCNINSQGVICLDILKDN 96
+ G + +F ++ H + Y F+ K T+ +Q
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHST-SYTFRSEKGLLSATQ------FTQ----------- 1733
Query: 97 WSPALTPFYCSILCL-DL-NQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 154
PAL DL ++G+I PAD
Sbjct: 1734 --PAL--TLMEKAAFEDLKSKGLI------------------------------PADATF 1759
Query: 155 AKHS 158
A HS
Sbjct: 1760 AGHS 1763
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.007
Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 36/156 (23%)
Query: 50 EGGVFFLDI--HFSPEYPFKPPKVTFRTRI---YHCNINSQGVICLDILKDNWSPALTPF 104
+ +F+L++ SPE + + +I + + I L I + L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRL 237
Query: 105 YCSILCLDLNQGVICLDILKDNWSP----ALTIS-KVLLSICSLLT-DCNPADPLVAKHS 158
L CL +L + + A +S K+L L T D L A
Sbjct: 238 ------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAAT- 285
Query: 159 DTVSTKQGRTRSDVQTMDQTLCHAESLN--AKTVSL 192
T + TL E + K +
Sbjct: 286 --------TTHISLDHHSMTLTPDEVKSLLLKYLDC 313
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 32.6 bits (74), Expect = 0.030
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 41 ILGPPGSVYEGGVFFLDIHF--SPEYPFKPPKVTFRTRIY-----HCNINSQGVICLDIL 93
+ G Y G + + I YP+ PP + ++++ G I L L
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 115
Query: 94 KDNWSPA 100
W
Sbjct: 116 -HEWKHP 121
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 27.6 bits (61), Expect = 1.9
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 56 LDIHFSPEYPFKPPKVTFRTRIY-----------HCNINSQGVICLDILKDNWSP 99
+ + YP KPP ++ + I+S G I L IL W P
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDP 138
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 26.7 bits (59), Expect = 3.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 56 LDIHFSPEYPFKPPKVTFRT 75
L H YP P ++ +
Sbjct: 60 LVFHLPVNYPSCLPGISINS 79
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.20.1.3
Length = 152
Score = 26.2 bits (57), Expect = 4.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 54 FFLDIHFSPEYPFKPPKVTFR 74
F L +YP P++T R
Sbjct: 75 FSLACILPFKYPAVLPEITVR 95
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 26.3 bits (59), Expect = 7.3
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 8/30 (26%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHF 60
GD + T V +G V L H
Sbjct: 22 GDGCFT---TAR-----VIDGKVSLLSAHI 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.444
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,937,294
Number of extensions: 160030
Number of successful extensions: 502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 88
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)