RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3655
(194 letters)
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 104 bits (260), Expect = 2e-29
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
+++Y+W ++GPP ++YEGG F + F +YP KPPK+ F + I+H NI+ +G
Sbjct: 24 LVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGN 83
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
+C+ IL D + W P T+ +LLS+ S+LTD
Sbjct: 84 VCISILHDPGDDKWGYERPE-----------------ERWLPVHTVETILLSVISMLTDP 126
Query: 148 NPADPL 153
N P
Sbjct: 127 NFESPA 132
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 99.4 bits (247), Expect = 9e-28
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
++LY W I+GPP ++YEGGVF + F +YP +PPK+ F T I+H N++ G +C+
Sbjct: 27 NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 86
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD 146
IL + ++ W P T+ +++S+ S+L D
Sbjct: 87 ILHEPGEDKYGYEKP-----------------EERWLPIHTVETIMISVISMLAD 124
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 97.0 bits (241), Expect = 1e-26
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 28/124 (22%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
L W I+GPP ++YE ++ L I P+YP PP V F T+I +NS +
Sbjct: 37 TLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV--- 93
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTD-CNPAD 151
+ +L W + +I VL + L+ N
Sbjct: 94 -----------------------DPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKL 129
Query: 152 PLVA 155
P
Sbjct: 130 PQPP 133
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 95.7 bits (237), Expect = 6e-26
Identities = 55/137 (40%), Positives = 71/137 (51%), Gaps = 29/137 (21%)
Query: 19 YSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIY 78
+S+ +S +G +++ W I GP G+ YEGG F LDI P+YP+ PPK+ F T+I+
Sbjct: 28 HSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIW 87
Query: 79 HCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLL 138
H NI+SQ G ICLDILK WSPALTI LL
Sbjct: 88 HPNISSQT-----------------------------GAICLDILKHEWSPALTIRTALL 118
Query: 139 SICSLLTDCNPADPLVA 155
SI ++L D P DP A
Sbjct: 119 SIQAMLADPVPTDPQDA 135
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 90.5 bits (224), Expect = 2e-24
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 28/122 (22%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
++ S+ +++ +W+ + G PG++YEG F L FS YPF P+V F + +
Sbjct: 24 TLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH 83
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
+ G ICL IL ++WSPAL++ V LSI S+
Sbjct: 84 VY----------------------------SNGHICLSILTEDWSPALSVQSVCLSIISM 115
Query: 144 LT 145
L+
Sbjct: 116 LS 117
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 89.8 bits (222), Expect = 8e-24
Identities = 68/129 (52%), Positives = 76/129 (58%), Gaps = 30/129 (23%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
S +GD+L+ W +TI+GPP S Y+GGVFFL IHF +YPFKPPKV F TRIYH NINS
Sbjct: 21 CSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDIL+ WSPALT KVLLSICSLL
Sbjct: 81 NGSICLDILRSQWSPALTIS------------------------------KVLLSICSLL 110
Query: 145 TDCNPADPL 153
D NP DPL
Sbjct: 111 CDPNPDDPL 119
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 89.9 bits (222), Expect = 1e-23
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
++ P +N++ W I GPP + Y GVF + F +YP PPK+TF I H NI
Sbjct: 23 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 82
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
G +C+ IL ++ WSP ++ K+LLS+ S+
Sbjct: 83 PNGEVCISILHSPGDDPNMYELA-----------------EERWSPVQSVEKILLSVMSM 125
Query: 144 LTDCNPADPL 153
L++ N
Sbjct: 126 LSEPNIESGA 135
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 88.9 bits (220), Expect = 1e-23
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 30/121 (24%)
Query: 33 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 92
+ +W TILGPP S +E ++ L I P YP PPKVTF ++I +N
Sbjct: 36 TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT------ 89
Query: 93 LKDNWSPALTPFYCSILCLDLNQGVICLDILK-DNWSPALTISKVLLSICSLLTDCNPAD 151
G + D +W A T+ +LL + +
Sbjct: 90 -----------------------GEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKK 126
Query: 152 P 152
Sbjct: 127 L 127
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 88.7 bits (219), Expect = 2e-23
Identities = 90/125 (72%), Positives = 92/125 (73%), Gaps = 30/125 (24%)
Query: 31 GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL 90
GDN+YEW STILGPPGSVYEGGVFFLDI FSP+YPFKPPKVTFRTRIYHCNINS
Sbjct: 28 GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS------ 81
Query: 91 DILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 150
QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA
Sbjct: 82 ------------------------QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 117
Query: 151 DPLVA 155
DPLV
Sbjct: 118 DPLVG 122
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 84.4 bits (208), Expect = 1e-21
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 30/129 (23%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
+S + DN+ W + I+GP + YE G F L + F EYP KPP V F + ++H N+ +
Sbjct: 23 VSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA 82
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDIL++ W+P ++ +L SI SL
Sbjct: 83 ------------------------------NGEICLDILQNRWTPTYDVASILTSIQSLF 112
Query: 145 TDCNPADPL 153
D NPA P
Sbjct: 113 NDPNPASPA 121
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 84.4 bits (208), Expect = 1e-21
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 35/134 (26%)
Query: 27 PPSI-----GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCN 81
P I GDNL++WV+T+ GP +VYE + L + F +YP+KPP V F T +H N
Sbjct: 26 DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN 85
Query: 82 INSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSIC 141
++ G ICLDILK+NW+ + + +LLS+
Sbjct: 86 VDQ------------------------------SGNICLDILKENWTASYDVRTILLSLQ 115
Query: 142 SLLTDCNPADPLVA 155
SLL + N A PL A
Sbjct: 116 SLLGEPNNASPLNA 129
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 82.1 bits (202), Expect = 2e-21
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
+ +N+ W+ +G ++Y V+ L I F +YP KPP V F +
Sbjct: 18 CTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 77
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICL +L D+++P+L+IS ++LSI S+L
Sbjct: 78 SN-----------------------------GDICLSLLGDDYNPSLSISGLVLSIISML 108
Query: 145 T 145
+
Sbjct: 109 S 109
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 83.3 bits (205), Expect = 3e-21
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 29/137 (21%)
Query: 20 SSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYH 79
+ +I + N+ EW + GP + YEGG + + F E+PFKPP + T
Sbjct: 16 DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGR 75
Query: 80 CNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS 139
N +CL D D W+PA ++S +L
Sbjct: 76 FKCN--TRLCL---------------------------SITDFHPDTWNPAWSVSTILTG 106
Query: 140 ICSLLTDCNPADPLVAK 156
+ S + + P +
Sbjct: 107 LLSFMVEKGPTLGSIET 123
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 82.0 bits (202), Expect = 9e-21
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 32/129 (24%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
IS D+L + I P Y+ G F YP PPKV T +YH NI+
Sbjct: 23 ISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID- 79
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
+G +CL+IL+++W P LTI+ ++ + L
Sbjct: 80 -----------------------------LEGNVCLNILREDWKPVLTINSIIYGLQYLF 110
Query: 145 TDCNPADPL 153
+ NP DPL
Sbjct: 111 LEPNPEDPL 119
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 80.6 bits (198), Expect = 3e-20
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 28/126 (22%)
Query: 28 PSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGV 87
P NL W I G G+ +EGG+F L + F +YP PPK F ++H N+ G
Sbjct: 30 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 89
Query: 88 ICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDC 147
+ L IL+++ +W PA+TI ++LL I LL +
Sbjct: 90 VSLSILEEDK----------------------------DWRPAITIKQILLGIQELLNEP 121
Query: 148 NPADPL 153
N DP
Sbjct: 122 NIQDPA 127
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 80.5 bits (198), Expect = 4e-20
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
D + E+ GP G+ YE G + L + +YPFK P + F RI H N++ +
Sbjct: 23 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS----- 77
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTI-SKVLLSICSLLTDCNPA 150
G +CLD++ W+P + + + + LL NP+
Sbjct: 78 ------------------------GSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 113
Query: 151 DPLVA 155
DPL
Sbjct: 114 DPLNV 118
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 79.1 bits (194), Expect = 1e-19
Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 29/124 (23%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
+++ T LGPPG+ YEGG F +DI EYPFKPPK+ F T++YH NI+S
Sbjct: 29 SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI-- 86
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
CLDILK+ WSP +T+ L+S+ +LL P D
Sbjct: 87 ---------------------------CLDILKNAWSPVITLKSALISLQALLQSPEPND 119
Query: 152 PLVA 155
P A
Sbjct: 120 PQDA 123
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 79.0 bits (194), Expect = 1e-19
Identities = 52/136 (38%), Positives = 65/136 (47%), Gaps = 30/136 (22%)
Query: 20 SSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYH 79
+ I+ DNL + TI GP S YE G+F L+++ +YP + PKV F T+IYH
Sbjct: 18 DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH 77
Query: 80 CNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS 139
NI+ G ICLD+LK NWSPAL I VLLS
Sbjct: 78 PNIDR------------------------------LGRICLDVLKTNWSPALQIRTVLLS 107
Query: 140 ICSLLTDCNPADPLVA 155
I +LL NP DPL
Sbjct: 108 IQALLASPNPNDPLAN 123
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 79.1 bits (194), Expect = 1e-19
Identities = 49/131 (37%), Positives = 62/131 (47%), Gaps = 29/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I + +N E I GPP + YEGG + L+I YPF PPKV F T+I+H NI+S
Sbjct: 27 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 86
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDILKD W+ A+T+ VLLS+ +LL
Sbjct: 87 VT-----------------------------GAICLDILKDQWAAAMTLRTVLLSLQALL 117
Query: 145 TDCNPADPLVA 155
P DP A
Sbjct: 118 AAAEPDDPQDA 128
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 78.6 bits (193), Expect = 2e-19
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 30/128 (23%)
Query: 27 PPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQG 86
+I L E+V GP G+ YEGGV+ + + +YPFK P + F +I+H NI+
Sbjct: 21 EVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEAS 80
Query: 87 VICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLS-ICSLLT 145
CLD++ W+ ++ + S + LL
Sbjct: 81 GTV-----------------------------CLDVINQTWTALYDLTNIFESFLPQLLA 111
Query: 146 DCNPADPL 153
NP DPL
Sbjct: 112 YPNPIDPL 119
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 76.9 bits (189), Expect = 6e-19
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 37/125 (29%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFL--DIHFSPEYPFKPPKVTFRT-----RIYHCNINS 84
D + + G Y G + + + YP+ PP + ++++
Sbjct: 44 DGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA 103
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G I L L + P + ++ + +
Sbjct: 104 NGKIYLPYLH------------------------------EWKHPQSDLLGLIQVMIVVF 133
Query: 145 TDCNP 149
D P
Sbjct: 134 GDEPP 138
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 76.7 bits (188), Expect = 7e-19
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 30/133 (22%)
Query: 23 TFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNI 82
F + NL W I P Y+ G F ++I+F EYPFKPPK+TF+T+IYH NI
Sbjct: 18 NFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI 76
Query: 83 NSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICS 142
+ +G +CL ++ W PA +V+ S+ +
Sbjct: 77 DEKGQVCLPVISAEN-----------------------------WKPATKTDQVIQSLIA 107
Query: 143 LLTDCNPADPLVA 155
L+ D P PL A
Sbjct: 108 LVNDPQPEHPLRA 120
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 76.4 bits (187), Expect = 1e-18
Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 30/129 (23%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
IS DNL++WV TI G G+VYE + L + F YP+ P V F T YH N+++
Sbjct: 21 ISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 80
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
QG I LDILK+ WS + +LLSI SLL
Sbjct: 81 ------------------------------QGNISLDILKEKWSALYDVRTILLSIQSLL 110
Query: 145 TDCNPADPL 153
+ N PL
Sbjct: 111 GEPNIDSPL 119
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 75.2 bits (184), Expect = 3e-18
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
+S DN+ W + I GP + +E G F L + F+ EYP KPP V F ++++H N+ +
Sbjct: 23 VSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA 82
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLDIL++ WSP + +L SI SLL
Sbjct: 83 DGSICLDILQNRWSPTYDV------------------------------AAILTSIQSLL 112
Query: 145 TDCNPADPLVA 155
+ NP P +
Sbjct: 113 DEPNPNSPANS 123
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 75.2 bits (184), Expect = 4e-18
Identities = 47/122 (38%), Positives = 56/122 (45%), Gaps = 30/122 (24%)
Query: 32 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLD 91
N + I GP S +EGG F L++ EYP PKV F T+IYH N++ G ICLD
Sbjct: 29 SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLD 88
Query: 92 ILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 151
ILKD WSPAL LLSI +LL+ NP D
Sbjct: 89 ILKDKWSPALQIRTV------------------------------LLSIQALLSAPNPDD 118
Query: 152 PL 153
PL
Sbjct: 119 PL 120
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 74.4 bits (182), Expect = 6e-18
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 30/130 (23%)
Query: 24 FISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN 83
+ S N+ W + + P Y F L I F PEYPFKPP + F T+IYH N++
Sbjct: 20 LRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 78
Query: 84 SQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSL 143
G ICL I+ W P +VL ++ L
Sbjct: 79 ENGQICLPIISSEN-----------------------------WKPCTKTCQVLEALNVL 109
Query: 144 LTDCNPADPL 153
+ N +PL
Sbjct: 110 VNRPNIREPL 119
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 74.1 bits (181), Expect = 1e-17
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 26/131 (19%)
Query: 25 ISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS 84
I+ D + + + ILG + YE GVF L++ YPF+PP++ F T IYH NI+S
Sbjct: 22 ITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 81
Query: 85 QGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLL 144
G ICLD+LK K W P+L I+ VL SI L+
Sbjct: 82 AGRICLDVLKLPP--------------------------KGAWRPSLNIATVLTSIQLLM 115
Query: 145 TDCNPADPLVA 155
++ NP DPL+A
Sbjct: 116 SEPNPDDPLMA 126
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 73.2 bits (179), Expect = 2e-17
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 30 IGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVIC 89
+ +++ EW I G SV++G VF L IHF+ EY + PP V F T +H N++
Sbjct: 29 VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHT--- 85
Query: 90 LDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 149
L+ + W+ T+S +LL++ +L++
Sbjct: 86 ----------------GQPCIDFLDNP--------EKWNTNYTLSSILLALQVMLSNPVL 121
Query: 150 ADPL 153
+P+
Sbjct: 122 ENPV 125
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 67.1 bits (163), Expect = 5e-15
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 35/132 (26%)
Query: 27 PPSI-----GDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCN 81
P I ++L + TI GP G+ Y GG+F + + ++P PPK F T+I+H N
Sbjct: 23 PDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN 82
Query: 82 INSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSIC 141
+ G IC+++LK +W+ L I VLL+I
Sbjct: 83 VG------------------------------ANGEICVNVLKRDWTAELGIRHVLLTIK 112
Query: 142 SLLTDCNPADPL 153
LL NP L
Sbjct: 113 CLLIHPNPESAL 124
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 66.8 bits (162), Expect = 8e-15
Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 42/143 (29%)
Query: 24 FISPPSIGDNLYEWVSTILG-PPGSVYEGGV-----------FFLDIHFSPEYPFKPPKV 71
S I D+LY+W + P S + L+ F +PF PP V
Sbjct: 26 IYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFV 85
Query: 72 TFRTRIYHCNINSQGVICLDILKDNWSPALTPFYCSILCLDLNQGVICLDIL-KDNWSPA 130
+ G +C+++L K WS A
Sbjct: 86 RVVLPVLSGGYVLGGG-----------------------------ALCMELLTKQGWSSA 116
Query: 131 LTISKVLLSICSLLTDCNPADPL 153
+I V++ I + L
Sbjct: 117 YSIESVIMQINATLVKGKARVQF 139
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 66.2 bits (161), Expect = 9e-15
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 23/123 (18%)
Query: 32 DNLYEWVSTILGPPGSVYEGGV---FFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVI 88
D + + +I G + +G + + YP KPP ++ + N S +
Sbjct: 49 DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLP 108
Query: 89 CLDILKDNWSPALTPFYCSILCLDLNQGVICLDILKDNWSPALTISKVLLSICSLLTDCN 148
+ G I L IL A+ + V+ + SLL +
Sbjct: 109 --------IQEYIDS-----------NGWIALPILHCWDPAAMNLIMVVQELMSLLHE-P 148
Query: 149 PAD 151
P D
Sbjct: 149 PQD 151
>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 137
Score = 26.2 bits (58), Expect = 1.5
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 152 PLVAKHSDTVSTKQGRTRSDVQTMDQTL 179
PL KH + V T +T D T++ L
Sbjct: 8 PLANKHPEWVKTATNKTLDDF-TLENVL 34
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 138
Score = 26.2 bits (58), Expect = 1.5
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 152 PLVAKHSDTVSTKQGRTRSDVQTMDQTL 179
PL + + + T G+ +D+ T+++ L
Sbjct: 9 PLATRCPEHILTPTGKPLTDI-TLEKVL 35
>d2basa2 d.110.6.2 (A:263-407) Hypothetical protein YkuI, C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 26.1 bits (57), Expect = 2.1
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 4 YRQYWDPQALCTRVVYSSLTFISPPSIGDNLYEWVSTILGPPGSVYEGGVFFLDIHFS 61
+R Y+ R+ F S E + T P + + F+D+ +S
Sbjct: 84 WRPYF--LENIMRMRNLRKGFFSDLYSDLETGEMIRTFSYP---MDDQMYLFIDLPYS 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.444
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 745,657
Number of extensions: 33733
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 45
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)