Query psy3656
Match_columns 185
No_of_seqs 163 out of 1335
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 22:18:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 99.9 5.5E-28 1.9E-32 170.4 7.3 103 82-184 3-110 (126)
2 2cup_A Skeletal muscle LIM-pro 99.9 1E-27 3.5E-32 162.7 7.9 94 81-174 4-101 (101)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 4.8E-27 1.7E-31 166.6 7.0 103 82-184 2-112 (131)
4 2rgt_A Fusion of LIM/homeobox 99.9 2.3E-26 7.9E-31 169.8 7.6 102 82-184 6-111 (169)
5 2jtn_A LIM domain-binding prot 99.9 5.2E-26 1.8E-30 169.8 8.4 104 80-184 58-165 (182)
6 1b8t_A Protein (CRP1); LIM dom 99.9 1.6E-25 5.4E-30 168.6 7.4 104 80-183 5-158 (192)
7 1rut_X Flinc4, fusion protein 99.9 5.5E-26 1.9E-30 170.6 4.5 103 82-184 5-115 (188)
8 1m3v_A FLIN4, fusion of the LI 99.8 1.2E-19 4.1E-24 126.9 2.9 80 82-161 5-89 (122)
9 1iml_A CRIP, cysteine rich int 99.7 3E-18 1E-22 109.9 5.4 70 83-152 1-72 (76)
10 1x68_A FHL5 protein; four-and- 99.7 1.1E-17 3.9E-22 107.2 5.0 67 82-148 5-75 (76)
11 2dj7_A Actin-binding LIM prote 99.7 1.8E-17 6.2E-22 107.4 5.6 66 80-146 13-79 (80)
12 1a7i_A QCRP2 (LIM1); LIM domai 99.7 7E-18 2.4E-22 109.5 3.4 70 82-151 7-77 (81)
13 1j2o_A FLIN2, fusion of rhombo 99.7 2.2E-17 7.5E-22 114.0 5.8 67 82-148 3-72 (114)
14 2dar_A PDZ and LIM domain prot 99.7 1.7E-17 5.8E-22 109.8 5.0 66 81-146 24-89 (90)
15 2cur_A Skeletal muscle LIM-pro 99.7 1.6E-17 5.5E-22 104.5 4.3 66 81-146 4-69 (69)
16 2d8z_A Four and A half LIM dom 99.7 2.2E-17 7.6E-22 104.1 4.8 66 81-146 4-69 (70)
17 2cuq_A Four and A half LIM dom 99.7 5.2E-17 1.8E-21 105.1 5.8 58 127-184 1-58 (80)
18 2egq_A FHL1 protein; LIM domai 99.7 4.7E-17 1.6E-21 104.6 5.5 57 127-183 1-62 (77)
19 2cu8_A Cysteine-rich protein 2 99.7 7.2E-17 2.5E-21 103.5 5.6 66 81-146 8-75 (76)
20 2ehe_A Four and A half LIM dom 99.7 4.7E-17 1.6E-21 105.8 4.7 58 127-184 1-60 (82)
21 1wyh_A SLIM 2, skeletal muscle 99.7 4.9E-17 1.7E-21 103.1 4.4 65 82-146 5-71 (72)
22 1x64_A Alpha-actinin-2 associa 99.7 7.8E-17 2.7E-21 106.4 5.6 64 82-145 25-88 (89)
23 1x3h_A Leupaxin; paxillin fami 99.7 8.2E-17 2.8E-21 104.1 5.4 58 127-184 1-58 (80)
24 1v6g_A Actin binding LIM prote 99.6 1.5E-16 5E-21 103.3 5.4 55 128-182 2-56 (81)
25 1x4k_A Skeletal muscle LIM-pro 99.6 1.1E-16 3.9E-21 101.4 4.6 65 82-146 5-71 (72)
26 1x6a_A LIMK-2, LIM domain kina 99.6 1.2E-16 3.9E-21 103.7 4.7 57 127-183 1-58 (81)
27 1x4l_A Skeletal muscle LIM-pro 99.6 1.4E-16 4.7E-21 101.1 5.0 64 81-144 4-71 (72)
28 2dlo_A Thyroid receptor-intera 99.6 1.7E-16 5.9E-21 102.9 5.4 56 127-183 2-57 (81)
29 1x3h_A Leupaxin; paxillin fami 99.6 9.7E-17 3.3E-21 103.8 4.1 66 81-146 14-79 (80)
30 1nyp_A Pinch protein; LIM doma 99.6 7.3E-17 2.5E-21 100.6 3.4 62 82-143 5-66 (66)
31 2d8y_A Eplin protein; LIM doma 99.6 2.5E-16 8.6E-21 104.4 6.1 69 81-149 14-83 (91)
32 2d8x_A Protein pinch; LIM doma 99.6 1.7E-16 5.8E-21 100.1 4.6 65 81-145 4-68 (70)
33 2dlo_A Thyroid receptor-intera 99.6 1.7E-16 6E-21 102.9 4.6 66 81-146 14-80 (81)
34 1g47_A Pinch protein; LIM doma 99.6 1.3E-16 4.5E-21 102.4 4.0 66 80-145 9-76 (77)
35 1x63_A Skeletal muscle LIM-pro 99.6 3.3E-16 1.1E-20 101.8 5.8 57 127-183 1-59 (82)
36 2cuq_A Four and A half LIM dom 99.6 2.3E-16 7.9E-21 102.0 4.9 66 81-146 14-79 (80)
37 1x62_A C-terminal LIM domain p 99.6 9.2E-17 3.1E-21 103.7 2.1 64 82-145 15-78 (79)
38 2ehe_A Four and A half LIM dom 99.6 4.2E-16 1.4E-20 101.3 4.8 66 81-146 14-81 (82)
39 2cor_A Pinch protein; LIM doma 99.6 5.5E-16 1.9E-20 100.1 5.0 65 80-145 13-77 (79)
40 1x63_A Skeletal muscle LIM-pro 99.6 1.4E-15 4.7E-20 98.8 5.2 65 81-145 14-80 (82)
41 1x61_A Thyroid receptor intera 99.6 1.3E-15 4.4E-20 96.5 3.7 66 81-147 4-71 (72)
42 2co8_A NEDD9 interacting prote 99.6 3.1E-15 1.1E-19 97.2 5.5 64 81-144 14-80 (82)
43 1b8t_A Protein (CRP1); LIM dom 99.6 1.9E-15 6.7E-20 113.3 4.4 71 81-151 114-185 (192)
44 1wig_A KIAA1808 protein; LIM d 99.5 6.3E-15 2.1E-19 93.6 5.5 62 82-143 5-67 (73)
45 2l3k_A Rhombotin-2, linker, LI 99.5 9.4E-15 3.2E-19 102.0 5.2 71 83-153 9-82 (123)
46 2l4z_A DNA endonuclease RBBP8, 99.5 6.7E-15 2.3E-19 102.7 4.2 61 81-141 60-123 (123)
47 3f6q_B LIM and senescent cell 99.5 6.5E-15 2.2E-19 93.0 3.4 62 80-141 9-72 (72)
48 1x6a_A LIMK-2, LIM domain kina 99.5 1.8E-14 6.1E-19 93.3 4.4 65 81-145 14-80 (81)
49 2egq_A FHL1 protein; LIM domai 99.5 5E-14 1.7E-18 90.2 4.7 58 81-138 14-76 (77)
50 2iyb_E Testin, TESS, TES; LIM 99.4 3.5E-14 1.2E-18 88.1 3.2 57 83-139 3-64 (65)
51 1wig_A KIAA1808 protein; LIM d 99.4 3.8E-13 1.3E-17 85.3 3.8 46 138-183 2-48 (73)
52 1v6g_A Actin binding LIM prote 99.3 5E-13 1.7E-17 86.4 3.3 60 82-141 15-75 (81)
53 2dar_A PDZ and LIM domain prot 99.3 1.4E-12 4.7E-17 86.0 5.4 55 130-184 14-68 (90)
54 1rut_X Flinc4, fusion protein 99.3 5.6E-13 1.9E-17 99.5 3.8 86 84-170 71-170 (188)
55 1x68_A FHL5 protein; four-and- 99.3 1.3E-12 4.5E-17 83.4 4.8 47 138-184 2-52 (76)
56 1nyp_A Pinch protein; LIM doma 99.3 8.8E-13 3E-17 81.9 3.2 46 138-183 2-47 (66)
57 2cur_A Skeletal muscle LIM-pro 99.3 2.7E-12 9.4E-17 80.3 4.9 46 139-184 3-48 (69)
58 2d8z_A Four and A half LIM dom 99.3 2.9E-12 9.8E-17 80.4 4.9 46 139-184 3-48 (70)
59 1x4l_A Skeletal muscle LIM-pro 99.3 3.4E-12 1.2E-16 80.5 4.5 46 139-184 3-52 (72)
60 1x4k_A Skeletal muscle LIM-pro 99.3 5.5E-12 1.9E-16 79.5 4.8 46 138-183 2-49 (72)
61 1wyh_A SLIM 2, skeletal muscle 99.3 4.8E-12 1.6E-16 79.8 4.4 46 138-183 2-49 (72)
62 2d8x_A Protein pinch; LIM doma 99.2 5.3E-12 1.8E-16 79.2 4.5 44 140-183 4-47 (70)
63 2iyb_E Testin, TESS, TES; LIM 99.2 4E-12 1.4E-16 78.7 3.5 45 140-184 1-49 (65)
64 1x61_A Thyroid receptor intera 99.2 1.2E-11 4.1E-16 77.9 5.0 46 139-184 3-50 (72)
65 2cu8_A Cysteine-rich protein 2 99.2 1.2E-11 4E-16 78.9 4.7 46 138-183 6-52 (76)
66 2cor_A Pinch protein; LIM doma 99.2 9.7E-12 3.3E-16 79.9 3.4 44 139-182 13-56 (79)
67 2l3k_A Rhombotin-2, linker, LI 99.2 9.5E-12 3.2E-16 86.7 3.4 49 136-184 1-54 (123)
68 1x62_A C-terminal LIM domain p 99.2 7.2E-12 2.5E-16 80.5 2.4 44 141-184 15-58 (79)
69 1x64_A Alpha-actinin-2 associa 99.2 2.2E-11 7.6E-16 80.0 4.4 44 141-184 25-68 (89)
70 1iml_A CRIP, cysteine rich int 99.1 4.2E-11 1.4E-15 76.2 4.5 42 142-183 1-43 (76)
71 3f6q_B LIM and senescent cell 99.1 3.2E-11 1.1E-15 75.8 3.7 47 137-183 7-55 (72)
72 2xqn_T Testin, TESS; metal-bin 99.1 3.6E-11 1.2E-15 83.9 4.1 59 82-140 63-125 (126)
73 2xjy_A Rhombotin-2; oncoprotei 99.1 1.6E-11 5.4E-16 86.3 1.8 58 84-141 68-128 (131)
74 1g47_A Pinch protein; LIM doma 99.1 5.6E-11 1.9E-15 75.8 3.4 46 138-183 8-55 (77)
75 2co8_A NEDD9 interacting prote 99.1 8.8E-11 3E-15 75.9 3.7 42 142-183 16-58 (82)
76 1a7i_A QCRP2 (LIM1); LIM domai 99.0 1.3E-10 4.5E-15 74.9 4.1 44 140-183 6-50 (81)
77 2dj7_A Actin-binding LIM prote 99.0 1.7E-10 5.7E-15 74.3 4.5 42 141-183 15-57 (80)
78 2l4z_A DNA endonuclease RBBP8, 99.0 1.2E-10 4.2E-15 81.0 3.8 46 138-183 58-106 (123)
79 2d8y_A Eplin protein; LIM doma 99.0 2E-10 6.7E-15 75.7 4.3 44 140-183 14-58 (91)
80 2cup_A Skeletal muscle LIM-pro 99.0 2.3E-10 7.9E-15 76.7 4.7 45 139-183 3-49 (101)
81 2jtn_A LIM domain-binding prot 99.0 2.8E-10 9.7E-15 84.3 5.5 56 127-182 43-102 (182)
82 2rgt_A Fusion of LIM/homeobox 99.0 1.3E-10 4.5E-15 85.2 3.6 86 82-169 65-156 (169)
83 1j2o_A FLIN2, fusion of rhombo 98.9 6.3E-10 2.2E-14 76.3 4.1 42 142-183 4-48 (114)
84 1m3v_A FLIN4, fusion of the LI 98.9 4.9E-10 1.7E-14 77.8 2.1 45 139-183 3-50 (122)
85 1zfo_A LAsp-1; LIM domain, zin 98.2 6E-07 2E-11 46.8 1.6 28 82-109 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.9 4.5E-06 1.5E-10 43.4 1.4 28 141-168 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 94.2 0.02 6.7E-07 39.0 2.0 91 82-181 7-127 (133)
88 2ysm_A Myeloid/lymphoid or mix 92.4 0.4 1.4E-05 31.8 6.1 75 81-170 6-86 (111)
89 2xeu_A Ring finger protein 4; 85.3 0.36 1.2E-05 28.0 1.5 11 170-180 47-57 (64)
90 3ng2_A RNF4, snurf, ring finge 85.3 0.22 7.5E-06 29.8 0.6 24 158-181 34-65 (71)
91 2kwj_A Zinc finger protein DPF 85.2 1 3.5E-05 30.0 3.9 75 83-169 2-89 (114)
92 1jm7_B BARD1, BRCA1-associated 83.8 1.2 4.2E-05 29.5 3.9 27 126-152 40-66 (117)
93 2ecm_A Ring finger and CHY zin 82.7 0.86 2.9E-05 25.5 2.4 8 160-167 28-35 (55)
94 2ecy_A TNF receptor-associated 81.9 0.51 1.7E-05 27.8 1.2 44 109-153 16-62 (66)
95 2jrp_A Putative cytoplasmic pr 81.6 1.1 3.7E-05 28.1 2.7 9 84-92 4-12 (81)
96 2ysl_A Tripartite motif-contai 80.3 0.7 2.4E-05 27.6 1.5 43 110-153 22-69 (73)
97 1t1h_A Gspef-atpub14, armadill 79.5 0.89 3E-05 27.6 1.8 46 108-154 8-56 (78)
98 1weo_A Cellulose synthase, cat 79.4 1.8 6.2E-05 27.5 3.1 51 81-151 15-68 (93)
99 2djb_A Polycomb group ring fin 79.1 1.1 3.9E-05 26.7 2.2 44 109-153 16-62 (72)
100 2ea6_A Ring finger protein 4; 78.7 0.52 1.8E-05 27.8 0.5 10 159-168 40-49 (69)
101 2ecv_A Tripartite motif-contai 78.7 1.8 6.2E-05 26.4 3.1 44 109-153 20-71 (85)
102 2csy_A Zinc finger protein 183 78.3 1 3.5E-05 27.6 1.8 43 109-152 16-60 (81)
103 2ecy_A TNF receptor-associated 77.0 0.66 2.3E-05 27.3 0.6 40 142-181 16-64 (66)
104 2djb_A Polycomb group ring fin 76.5 0.99 3.4E-05 27.0 1.3 9 159-167 34-42 (72)
105 2ysl_A Tripartite motif-contai 76.2 1.3 4.6E-05 26.3 1.9 40 142-181 21-71 (73)
106 1bor_A Transcription factor PM 76.0 2.6 8.8E-05 23.9 3.0 41 110-152 8-48 (56)
107 2d8t_A Dactylidin, ring finger 75.6 1.5 5.1E-05 26.1 2.0 44 109-153 16-61 (71)
108 2yur_A Retinoblastoma-binding 75.2 1.9 6.6E-05 25.9 2.4 43 109-152 16-63 (74)
109 3l11_A E3 ubiquitin-protein li 75.1 1.4 4.8E-05 29.0 1.9 42 110-152 17-61 (115)
110 1e4u_A Transcriptional repress 74.4 1.7 6E-05 26.7 2.1 29 127-155 33-64 (78)
111 2ect_A Ring finger protein 126 74.2 2.9 9.8E-05 25.2 3.1 46 109-154 16-65 (78)
112 2ecw_A Tripartite motif-contai 74.1 1.5 5.2E-05 26.7 1.8 44 110-154 21-72 (85)
113 1t1h_A Gspef-atpub14, armadill 73.9 2 7E-05 25.9 2.3 40 142-181 9-57 (78)
114 2y43_A E3 ubiquitin-protein li 73.9 1.2 4.1E-05 28.5 1.3 44 109-153 23-69 (99)
115 2yur_A Retinoblastoma-binding 73.7 1.3 4.5E-05 26.7 1.4 26 83-108 16-42 (74)
116 2ecn_A Ring finger protein 141 73.4 0.7 2.4E-05 27.4 0.0 42 109-152 16-59 (70)
117 2ecw_A Tripartite motif-contai 73.0 2 6.7E-05 26.2 2.1 40 142-181 20-73 (85)
118 1jm7_A BRCA1, breast cancer ty 71.8 1.8 6.2E-05 28.1 1.8 27 127-153 39-70 (112)
119 2ct0_A Non-SMC element 1 homol 71.8 1.7 5.9E-05 26.6 1.6 37 142-178 16-63 (74)
120 3vk6_A E3 ubiquitin-protein li 71.2 1.6 5.4E-05 28.5 1.3 43 111-153 4-49 (101)
121 4ayc_A E3 ubiquitin-protein li 70.0 1.9 6.5E-05 29.5 1.6 43 110-153 55-99 (138)
122 2egp_A Tripartite motif-contai 69.8 2 6.8E-05 25.9 1.6 12 142-153 54-65 (79)
123 4ap4_A E3 ubiquitin ligase RNF 69.7 1.9 6.7E-05 28.7 1.6 68 108-177 7-82 (133)
124 3fl2_A E3 ubiquitin-protein li 69.6 2.2 7.5E-05 28.4 1.9 44 109-153 53-99 (124)
125 1jm7_A BRCA1, breast cancer ty 69.6 2 6.8E-05 27.9 1.6 39 143-181 23-72 (112)
126 2ecl_A Ring-box protein 2; RNF 69.2 2.1 7E-05 26.4 1.5 23 158-180 47-77 (81)
127 2dmj_A Poly (ADP-ribose) polym 69.2 1.5 5E-05 28.9 0.9 34 136-169 20-65 (106)
128 2ct2_A Tripartite motif protei 68.9 2.7 9.3E-05 25.8 2.1 46 109-154 16-69 (88)
129 4ayc_A E3 ubiquitin-protein li 68.8 1.8 6.2E-05 29.6 1.3 38 143-180 55-100 (138)
130 1chc_A Equine herpes virus-1 r 68.3 2.4 8.3E-05 24.7 1.7 28 125-152 22-51 (68)
131 3lrq_A E3 ubiquitin-protein li 68.1 1.9 6.3E-05 27.7 1.2 44 109-153 23-70 (100)
132 2y43_A E3 ubiquitin-protein li 67.7 1.5 5.2E-05 28.0 0.7 37 83-119 23-68 (99)
133 4ic3_A E3 ubiquitin-protein li 67.6 4.4 0.00015 24.4 2.8 26 126-153 41-67 (74)
134 2cs3_A Protein C14ORF4, MY039 67.4 2.8 9.7E-05 26.1 1.8 48 82-134 15-63 (93)
135 2ckl_A Polycomb group ring fin 66.9 3.5 0.00012 26.7 2.4 44 109-153 16-62 (108)
136 2e6s_A E3 ubiquitin-protein li 66.7 7.6 0.00026 23.8 3.8 43 128-170 9-58 (77)
137 3hct_A TNF receptor-associated 66.6 2.1 7.1E-05 28.4 1.2 45 109-154 19-66 (118)
138 1z6u_A NP95-like ring finger p 66.6 2.7 9.2E-05 29.3 1.9 45 109-154 79-126 (150)
139 2ep4_A Ring finger protein 24; 65.5 2.3 7.9E-05 25.4 1.2 43 110-152 17-63 (74)
140 1x4j_A Ring finger protein 38; 65.2 2.9 9.8E-05 25.1 1.6 9 160-168 45-53 (75)
141 2ecg_A Baculoviral IAP repeat- 65.0 3.6 0.00012 24.8 2.0 24 128-153 44-68 (75)
142 1jm7_B BARD1, BRCA1-associated 64.2 5.9 0.0002 26.0 3.2 39 142-180 23-68 (117)
143 3odc_A Poly [ADP-ribose] polym 62.1 1.8 6.1E-05 28.8 0.2 17 136-152 14-30 (111)
144 3od8_A Poly [ADP-ribose] polym 61.9 1.7 5.9E-05 29.1 0.1 34 136-169 33-78 (116)
145 3nw0_A Non-structural maintena 61.8 4.2 0.00014 30.7 2.3 39 142-180 181-230 (238)
146 2kre_A Ubiquitin conjugation f 61.8 4 0.00014 26.3 1.9 47 106-153 27-75 (100)
147 4gne_A Histone-lysine N-methyl 61.1 17 0.00059 23.8 4.9 52 81-152 14-69 (107)
148 2ckl_A Polycomb group ring fin 60.3 2.5 8.5E-05 27.4 0.7 25 84-108 17-42 (108)
149 3l11_A E3 ubiquitin-protein li 60.0 3.8 0.00013 26.8 1.6 36 143-178 17-61 (115)
150 1wgm_A Ubiquitin conjugation f 59.4 4.4 0.00015 26.0 1.7 46 107-153 21-69 (98)
151 1iym_A EL5; ring-H2 finger, ub 59.3 8.5 0.00029 21.1 2.8 10 142-151 44-53 (55)
152 1g25_A CDK-activating kinase a 59.3 3.2 0.00011 24.0 1.0 30 125-154 24-56 (65)
153 2ckl_B Ubiquitin ligase protei 59.0 4.4 0.00015 28.4 1.9 43 109-152 55-101 (165)
154 2jne_A Hypothetical protein YF 58.3 5.9 0.0002 25.6 2.1 37 142-184 62-98 (101)
155 1v87_A Deltex protein 2; ring- 57.9 3.2 0.00011 27.0 0.9 11 109-119 26-36 (114)
156 3fl2_A E3 ubiquitin-protein li 57.8 2.6 8.9E-05 28.1 0.4 37 83-119 53-98 (124)
157 2eqg_A Tumor necrosis factor, 56.9 4.2 0.00014 22.1 1.1 18 123-140 22-39 (49)
158 2ckl_B Ubiquitin ligase protei 55.4 3 0.0001 29.3 0.5 37 83-119 55-101 (165)
159 2kiz_A E3 ubiquitin-protein li 55.1 5.1 0.00018 23.4 1.4 26 127-152 35-62 (69)
160 2kr4_A Ubiquitin conjugation f 54.5 5.1 0.00017 24.9 1.4 46 107-153 13-60 (85)
161 2ecj_A Tripartite motif-contai 54.3 8.4 0.00029 21.3 2.3 14 126-139 32-45 (58)
162 3ztg_A E3 ubiquitin-protein li 53.6 3.1 0.00011 26.0 0.2 42 109-151 14-60 (92)
163 1rmd_A RAG1; V(D)J recombinati 53.5 4.7 0.00016 26.4 1.2 46 109-155 24-72 (116)
164 3hcs_A TNF receptor-associated 52.9 5 0.00017 28.2 1.3 42 110-152 20-64 (170)
165 1z6u_A NP95-like ring finger p 52.6 3.7 0.00013 28.6 0.5 37 83-119 79-124 (150)
166 1v9x_A Poly (ADP-ribose) polym 51.8 4.3 0.00015 27.1 0.7 34 136-169 15-60 (114)
167 2ea5_A Cell growth regulator w 51.8 20 0.00068 21.0 3.7 30 123-154 29-59 (68)
168 2dmi_A Teashirt homolog 3; zin 51.6 2.6 8.9E-05 27.1 -0.4 11 168-178 81-91 (115)
169 2c2l_A CHIP, carboxy terminus 49.1 9 0.00031 28.8 2.3 48 105-153 205-255 (281)
170 2l0b_A E3 ubiquitin-protein li 48.6 6 0.0002 24.7 1.0 44 109-152 41-88 (91)
171 3nw0_A Non-structural maintena 44.5 6.1 0.00021 29.8 0.6 13 142-154 218-230 (238)
172 2yho_A E3 ubiquitin-protein li 44.3 21 0.0007 21.7 3.0 28 125-154 34-62 (79)
173 3knv_A TNF receptor-associated 43.9 2.3 7.8E-05 29.4 -1.7 42 109-151 32-76 (141)
174 1wil_A KIAA1045 protein; ring 43.7 4.4 0.00015 25.5 -0.2 7 143-149 31-37 (89)
175 2d8s_A Cellular modulator of i 43.6 23 0.00077 21.7 3.1 39 142-180 16-71 (80)
176 2e5r_A Dystrobrevin alpha; ZZ 43.0 13 0.00045 21.8 1.8 17 142-158 12-29 (63)
177 2ysj_A Tripartite motif-contai 42.6 7.2 0.00025 22.2 0.6 27 142-168 21-47 (63)
178 2gvi_A Conserved hypothetical 42.4 3.9 0.00013 30.1 -0.7 30 109-138 173-202 (204)
179 1jjd_A Metallothionein, SMTA; 42.2 14 0.00047 21.2 1.8 29 110-138 9-38 (55)
180 4av1_A Poly [ADP-ribose] polym 40.3 5.9 0.0002 29.6 0.0 32 81-112 38-81 (223)
181 3hcs_A TNF receptor-associated 40.1 10 0.00035 26.6 1.2 39 142-180 19-66 (170)
182 2yql_A PHD finger protein 21A; 40.1 23 0.0008 19.9 2.6 9 161-169 29-37 (56)
183 1uw0_A DNA ligase III; DNA rep 39.8 5.2 0.00018 26.8 -0.4 17 136-152 10-26 (117)
184 1znf_A 31ST zinc finger from X 39.3 12 0.00042 16.2 1.1 11 168-178 2-12 (27)
185 3dpl_R Ring-box protein 1; ubi 39.2 11 0.00037 24.6 1.1 20 158-177 72-99 (106)
186 3ql9_A Transcriptional regulat 38.7 12 0.00043 25.4 1.4 11 82-92 8-18 (129)
187 1fp0_A KAP-1 corepressor; PHD 37.7 44 0.0015 21.0 3.8 6 130-135 38-43 (88)
188 3t6p_A Baculoviral IAP repeat- 36.4 26 0.0009 27.8 3.2 42 109-153 296-338 (345)
189 1ard_A Yeast transcription fac 36.3 14 0.00049 16.2 1.1 12 168-179 3-14 (29)
190 2cs2_A Poly [ADP-ribose] polym 36.0 12 0.0004 25.7 0.9 34 136-169 22-69 (134)
191 2kvh_A Zinc finger and BTB dom 35.7 12 0.0004 16.4 0.7 11 168-178 4-14 (27)
192 2f42_A STIP1 homology and U-bo 35.6 14 0.00049 26.5 1.4 47 106-153 104-153 (179)
193 2lri_C Autoimmune regulator; Z 35.4 15 0.00053 21.7 1.3 6 169-174 52-57 (66)
194 2puy_A PHD finger protein 21A; 35.4 25 0.00085 20.1 2.2 9 161-169 25-33 (60)
195 1paa_A Yeast transcription fac 35.1 16 0.00055 16.2 1.2 12 168-179 3-14 (30)
196 1wfh_A Zinc finger (AN1-like) 34.9 24 0.00083 20.8 2.1 11 82-92 15-25 (64)
197 1xwh_A Autoimmune regulator; P 34.6 29 0.00099 20.3 2.5 6 130-135 21-26 (66)
198 1wg2_A Zinc finger (AN1-like) 34.5 24 0.00083 20.8 2.0 11 82-92 15-25 (64)
199 2lbm_A Transcriptional regulat 33.7 8.6 0.0003 26.6 -0.0 12 81-92 13-24 (142)
200 2ebr_A Nuclear pore complex pr 33.3 30 0.001 19.0 2.2 31 123-153 5-37 (47)
201 1wev_A Riken cDNA 1110020M19; 33.3 43 0.0015 20.8 3.2 28 142-169 17-49 (88)
202 4ayb_P DNA-directed RNA polyme 33.1 19 0.00063 19.9 1.3 14 168-181 4-17 (48)
203 2kvf_A Zinc finger and BTB dom 33.1 14 0.00047 16.2 0.7 12 168-179 4-15 (28)
204 2lvu_A Zinc finger and BTB dom 38.9 9.3 0.00032 16.6 0.0 12 168-179 3-14 (26)
205 1rik_A E6APC1 peptide; E6-bind 32.4 15 0.00053 16.1 0.8 12 168-179 3-14 (29)
206 1klr_A Zinc finger Y-chromosom 32.1 20 0.00068 15.7 1.2 12 168-179 3-14 (30)
207 2vpb_A Hpygo1, pygopus homolog 31.9 22 0.00075 20.9 1.6 26 142-167 9-39 (65)
208 2m0e_A Zinc finger and BTB dom 31.5 21 0.00073 15.4 1.3 12 168-179 3-14 (29)
209 1k3x_A Endonuclease VIII; hydr 30.9 12 0.00041 28.6 0.3 29 139-167 232-260 (262)
210 3u6p_A Formamidopyrimidine-DNA 30.5 12 0.00041 28.8 0.3 29 139-167 243-271 (273)
211 2m0f_A Zinc finger and BTB dom 30.2 16 0.00056 15.9 0.7 11 168-178 3-13 (29)
212 2lvr_A Zinc finger and BTB dom 35.7 11 0.00039 16.8 0.0 12 168-179 4-15 (30)
213 1p7a_A BF3, BKLF, kruppel-like 29.4 20 0.00068 17.1 1.0 13 167-179 11-23 (37)
214 2lvt_A Zinc finger and BTB dom 35.5 11 0.00039 16.8 0.0 12 168-179 3-14 (29)
215 2kvg_A Zinc finger and BTB dom 29.3 13 0.00044 16.4 0.2 12 168-179 4-15 (27)
216 4a0k_B E3 ubiquitin-protein li 29.0 12 0.0004 25.0 0.0 21 158-178 83-111 (117)
217 1k82_A Formamidopyrimidine-DNA 28.9 13 0.00046 28.4 0.3 28 140-167 239-266 (268)
218 2xzf_A Formamidopyrimidine-DNA 28.6 14 0.00047 28.4 0.3 27 141-167 242-268 (271)
219 1wfp_A Zinc finger (AN1-like) 28.6 33 0.0011 20.9 2.0 11 82-92 25-35 (74)
220 1ee8_A MUTM (FPG) protein; bet 28.6 14 0.00048 28.3 0.4 28 140-167 234-261 (266)
221 2lq6_A Bromodomain-containing 28.3 29 0.00099 21.7 1.8 8 142-149 18-25 (87)
222 2m0d_A Zinc finger and BTB dom 28.2 18 0.00063 15.9 0.7 11 168-178 4-14 (30)
223 2lo3_A SAGA-associated factor 28.0 16 0.00054 19.7 0.4 12 82-93 17-28 (44)
224 2yu4_A E3 SUMO-protein ligase 27.8 19 0.00065 22.5 0.9 44 108-152 7-62 (94)
225 2d8v_A Zinc finger FYVE domain 27.6 14 0.00047 22.0 0.1 14 127-140 26-39 (67)
226 2bay_A PRE-mRNA splicing facto 27.2 22 0.00075 20.4 1.0 47 109-156 4-53 (61)
227 1wjv_A Cell growth regulating 27.0 4.2 0.00014 25.2 -2.3 56 82-137 10-71 (79)
228 2elx_A Zinc finger protein 406 26.9 18 0.00063 16.8 0.6 12 167-178 7-18 (35)
229 2y1n_A E3 ubiquitin-protein li 26.8 22 0.00076 28.8 1.3 45 109-154 333-380 (389)
230 2elr_A Zinc finger protein 406 26.7 24 0.00082 16.6 1.0 13 167-179 9-21 (36)
231 3h33_A Cytochrome C7, cytochro 26.7 7.1 0.00024 23.9 -1.3 9 143-151 26-34 (75)
232 3htk_C E3 SUMO-protein ligase 26.2 29 0.00099 26.6 1.8 48 108-156 181-235 (267)
233 1srk_A Zinc finger protein ZFP 25.9 20 0.00067 16.8 0.6 11 168-178 8-18 (35)
234 1wfl_A Zinc finger protein 216 25.7 27 0.00092 21.3 1.2 11 82-92 25-35 (74)
235 2kfq_A FP1; protein, de novo p 25.4 19 0.00066 16.7 0.5 10 168-177 3-12 (32)
236 3v43_A Histone acetyltransfera 25.4 91 0.0031 20.1 4.0 39 125-169 51-93 (112)
237 2a20_A Regulating synaptic mem 25.2 17 0.00057 21.2 0.2 10 143-152 35-44 (62)
238 1rim_A E6APC2 peptide; E6-bind 25.1 28 0.00094 16.3 1.1 11 168-178 3-13 (33)
239 2yt5_A Metal-response element- 24.9 60 0.0021 18.6 2.7 10 160-169 30-39 (66)
240 3c6w_A P28ING5, inhibitor of g 24.6 38 0.0013 19.3 1.7 24 146-169 13-41 (59)
241 1vq8_U 50S ribosomal protein L 24.5 39 0.0013 20.0 1.8 24 142-165 4-31 (66)
242 1ef4_A Subunit N, DNA-directed 24.2 27 0.00094 19.9 1.0 11 142-152 4-14 (55)
243 1mm2_A MI2-beta; PHD, zinc fin 24.2 1.1E+02 0.0036 17.4 4.4 46 82-138 9-56 (61)
244 3oue_A Cytochrome C family pro 24.1 11 0.00037 26.6 -0.9 15 163-177 101-115 (158)
245 2pv0_B DNA (cytosine-5)-methyl 24.0 23 0.00078 28.8 0.8 25 128-152 114-150 (386)
246 2elm_A Zinc finger protein 406 24.0 21 0.00072 17.2 0.4 11 168-178 10-20 (37)
247 4hc9_A Trans-acting T-cell-spe 23.9 52 0.0018 21.7 2.5 12 142-153 60-71 (115)
248 2ebq_A Nuclear pore complex pr 23.8 34 0.0012 18.8 1.3 26 127-152 9-36 (47)
249 1fv5_A First zinc finger of U- 23.7 21 0.00073 18.0 0.4 13 167-179 8-20 (36)
250 2elq_A Zinc finger protein 406 23.6 26 0.00087 16.5 0.7 11 168-178 10-20 (36)
251 2elp_A Zinc finger protein 406 23.2 26 0.00091 16.6 0.8 13 167-179 9-21 (37)
252 2elt_A Zinc finger protein 406 23.2 24 0.00083 16.6 0.6 12 167-178 9-20 (36)
253 3j21_V 50S ribosomal protein L 23.0 47 0.0016 19.7 1.9 25 142-166 5-33 (66)
254 3h34_A Cytochrome C7, cytochro 22.7 4 0.00014 24.6 -3.0 28 143-170 26-53 (70)
255 3h4n_A Cytochrome C7, cytochro 22.6 4 0.00014 24.7 -3.0 10 143-152 27-36 (72)
256 2els_A Zinc finger protein 406 22.6 26 0.00088 16.5 0.6 11 168-178 10-20 (36)
257 1wen_A Inhibitor of growth fam 22.4 53 0.0018 19.5 2.1 9 168-176 57-65 (71)
258 2elo_A Zinc finger protein 406 22.2 24 0.00081 16.8 0.4 13 167-179 9-21 (37)
259 4ayb_N DNA-directed RNA polyme 22.1 17 0.00057 21.7 -0.2 8 170-177 7-14 (66)
260 2elv_A Zinc finger protein 406 22.1 26 0.00088 16.5 0.6 11 168-178 10-20 (36)
261 1f62_A Transcription factor WS 22.1 33 0.0011 18.7 1.1 8 161-168 23-30 (51)
262 2i5o_A DNA polymerase ETA; zin 22.1 24 0.0008 18.6 0.4 12 168-179 10-21 (39)
263 4g9i_A Hydrogenase maturation 21.9 22 0.00076 31.6 0.4 82 71-167 145-228 (772)
264 2g6q_A Inhibitor of growth pro 21.9 46 0.0016 19.2 1.7 23 146-168 15-42 (62)
265 2l5u_A Chromodomain-helicase-D 21.7 40 0.0014 19.3 1.4 7 161-167 31-37 (61)
266 3o9x_A Uncharacterized HTH-typ 21.6 40 0.0014 22.2 1.6 37 142-178 3-47 (133)
267 1k81_A EIF-2-beta, probable tr 21.4 42 0.0014 17.1 1.3 27 143-171 2-28 (36)
268 3asl_A E3 ubiquitin-protein li 21.2 58 0.002 19.2 2.1 26 144-169 21-49 (70)
269 2yte_A Zinc finger protein 473 21.2 35 0.0012 16.7 1.0 12 167-178 10-21 (42)
270 2c2l_A CHIP, carboxy terminus 21.2 42 0.0014 25.0 1.8 38 143-180 210-256 (281)
271 2jny_A Uncharacterized BCR; st 20.8 28 0.00094 20.7 0.6 24 109-135 11-34 (67)
272 3gj5_B Nuclear pore complex pr 20.7 42 0.0014 17.1 1.2 23 128-150 6-30 (34)
273 2vnf_A ING 4, P29ING4, inhibit 20.6 51 0.0018 18.8 1.7 24 146-169 14-42 (60)
274 1njq_A Superman protein; zinc- 20.5 28 0.00097 16.8 0.5 12 167-178 6-17 (39)
275 2hf1_A Tetraacyldisaccharide-1 20.5 28 0.00097 20.7 0.6 23 110-135 10-32 (68)
276 2k1p_A Zinc finger RAN-binding 20.4 77 0.0026 15.7 2.2 24 128-151 5-30 (33)
277 3cw2_K Translation initiation 20.4 38 0.0013 23.2 1.3 29 142-172 104-132 (139)
278 2ytb_A Zinc finger protein 32; 20.4 39 0.0013 16.5 1.1 12 167-178 11-22 (42)
279 2y1n_A E3 ubiquitin-protein li 20.3 53 0.0018 26.6 2.3 9 84-92 334-342 (389)
280 2ely_A Zinc finger protein 224 20.1 46 0.0016 16.8 1.4 14 167-180 12-25 (46)
281 2en7_A Zinc finger protein 268 20.1 38 0.0013 16.7 1.0 12 167-178 12-23 (44)
282 2enf_A Zinc finger protein 347 20.1 38 0.0013 17.0 1.0 13 167-179 12-24 (46)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=170.37 Aligned_cols=103 Identities=29% Similarity=0.590 Sum_probs=96.4
Q ss_pred CCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCccc--CceEEe
Q psy3656 82 KGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL--DKCVTA 158 (185)
Q Consensus 82 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~--~~~~~~ 158 (185)
.++|..|+++|. ++.+.++|+.||.+||+|..|+.+|.+..|+.++|++||+.||.++|+++|..|+++|. +..|.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a 82 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTY 82 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEE
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEEC
Confidence 467999999997 57899999999999999999999998888999999999999999999999999999999 578999
Q ss_pred CCCeec--ccCcccccCCCccCCCCeee
Q psy3656 159 LEKTWH--TEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 159 ~~~~~H--~~Cf~C~~C~~~l~~~~~~~ 184 (185)
+++.|| ++||+|..|+++|+++.|..
T Consensus 83 ~~~~~H~~~~CF~C~~C~~~l~~~~f~~ 110 (126)
T 2xqn_T 83 NNFSWHASTECFLCSCCSKCLIGQKFMP 110 (126)
T ss_dssp TTEEEESSTTTSBCTTTCCBCTTSEEEE
T ss_pred CCCEeeCCCCCcCcCCCCCccCCCeeEe
Confidence 999999 99999999999999888754
No 2
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.94 E-value=1e-27 Score=162.70 Aligned_cols=94 Identities=27% Similarity=0.579 Sum_probs=88.3
Q ss_pred CCCcccccccccc--cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCccc--CceE
Q psy3656 81 QKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL--DKCV 156 (185)
Q Consensus 81 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~--~~~~ 156 (185)
...+|..|+++|. ++.+.++++.||.+||+|..|+.+|.+..|+.++|++||+.||.++|+++|..|+++|. +..|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 83 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNV 83 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEE
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEE
Confidence 3578999999995 67899999999999999999999998878999999999999999999999999999999 5789
Q ss_pred EeCCCeecccCcccccCC
Q psy3656 157 TALEKTWHTEHFFCAQCG 174 (185)
Q Consensus 157 ~~~~~~~H~~Cf~C~~C~ 174 (185)
+++++.||++||+|..|+
T Consensus 84 ~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 84 EYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ESSSCEEETTTCCCTTCC
T ss_pred EeCCcchHHhCCCCCCCC
Confidence 999999999999999996
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.94 E-value=4.8e-27 Score=166.56 Aligned_cols=103 Identities=28% Similarity=0.624 Sum_probs=93.4
Q ss_pred CCcccccccccccc-eeeecCcccccCCccCCCCCCCCC--CCCeeeeCCcCCCccchhhccCC--CCCccCCcccC--c
Q psy3656 82 KGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELG--TRNFFERDSRPYCEPDYHNLFSP--RCSYCNGPILD--K 154 (185)
Q Consensus 82 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~~~~~~~~~--~C~~C~~~i~~--~ 154 (185)
..+|..|+++|.+. .+.++++.||.+||+|..|+.+|. +..|+.++|++||+.||.++|++ +|..|+++|.+ .
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 35799999999866 689999999999999999999996 35799999999999999999998 99999999985 5
Q ss_pred eEEeCCCeecccCcccccCCCcc-CCCCeee
Q psy3656 155 CVTALEKTWHTEHFFCAQCGKQF-GEAMVKF 184 (185)
Q Consensus 155 ~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~ 184 (185)
.|.+.++.||++||+|..|+++| .++.|+.
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 112 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLL 112 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEE
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEE
Confidence 78999999999999999999999 4676653
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.93 E-value=2.3e-26 Score=169.85 Aligned_cols=102 Identities=26% Similarity=0.652 Sum_probs=91.0
Q ss_pred CCcccccccccccc-eeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCcccC--ceEEe
Q psy3656 82 KGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD--KCVTA 158 (185)
Q Consensus 82 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~~--~~~~~ 158 (185)
..+|..|+++|.++ ++.++|+.||.+||+|..|+.+|.+.. +.++|++||+.||.++|+++|..|+++|.+ .++.+
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a 84 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 84 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEE
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEEEEc
Confidence 56899999999765 688999999999999999999997765 589999999999999999999999999986 35689
Q ss_pred CCCeecccCcccccCCCccC-CCCeee
Q psy3656 159 LEKTWHTEHFFCAQCGKQFG-EAMVKF 184 (185)
Q Consensus 159 ~~~~~H~~Cf~C~~C~~~l~-~~~~~~ 184 (185)
.++.||++||+|..|+++|. ++.|++
T Consensus 85 ~~~~~H~~CF~C~~C~~~L~~g~~f~~ 111 (169)
T 2rgt_A 85 QDFVYHLHCFACVVCKRQLATGDEFYL 111 (169)
T ss_dssp TTEEEEGGGCBCTTTCCBCCTTCEEEE
T ss_pred CCceEeeCCCcCCCCCCCCCCCCceEE
Confidence 99999999999999999996 666643
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.93 E-value=5.2e-26 Score=169.84 Aligned_cols=104 Identities=26% Similarity=0.645 Sum_probs=92.4
Q ss_pred CCCCcccccccccccc-eeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCcccC--ceE
Q psy3656 80 TQKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD--KCV 156 (185)
Q Consensus 80 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~~--~~~ 156 (185)
...++|..|+++|.+. ++.++++.||..||+|..|+.+|.... +.++|++||+.||.++|+++|..|+++|.+ .++
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~ 136 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR 136 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCceEE
Confidence 3457899999999765 678999999999999999999997665 579999999999999999999999999985 356
Q ss_pred EeCCCeecccCcccccCCCccC-CCCeee
Q psy3656 157 TALEKTWHTEHFFCAQCGKQFG-EAMVKF 184 (185)
Q Consensus 157 ~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~ 184 (185)
.+.++.||++||+|..|+++|. ++.|++
T Consensus 137 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 165 (182)
T 2jtn_A 137 RAQDFVYHLHCFACVVCKRQLATGDEFYL 165 (182)
T ss_dssp EETTEECCTTTCCCTTTCCCCCTTCEEEE
T ss_pred ecCCCCEEeCCCcCCCCCCCCCCCCceEE
Confidence 8999999999999999999996 566543
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=1.6e-25 Score=168.56 Aligned_cols=104 Identities=24% Similarity=0.651 Sum_probs=94.9
Q ss_pred CCCCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCC---------------
Q psy3656 80 TQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR--------------- 143 (185)
Q Consensus 80 ~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~--------------- 143 (185)
.+..+|..|+++|. ++.+.++|+.||.+||+|..|+.+|....|+.++|++||+.||.++|+++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 34578999999995 78889999999999999999999999888999999999999999999876
Q ss_pred ---------------------------------CCccCCccc-CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 144 ---------------------------------CSYCNGPIL-DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 144 ---------------------------------C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~ 158 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA 158 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEE
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccc
Confidence 778999998 5788899999999999999999999877765
No 7
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.92 E-value=5.5e-26 Score=170.56 Aligned_cols=103 Identities=23% Similarity=0.594 Sum_probs=93.2
Q ss_pred CCcccccccccccc-eeeecCcccccCCccCCCCCCCCCC--CCeeeeCCcCCCccchhhccCC--CCCccCCcccC--c
Q psy3656 82 KGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGT--RNFFERDSRPYCEPDYHNLFSP--RCSYCNGPILD--K 154 (185)
Q Consensus 82 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~yC~~~~~~~~~~--~C~~C~~~i~~--~ 154 (185)
..+|..|+++|.+. ++.++++.||.+||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|..|+++|.+ .
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~ 84 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASEL 84 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSE
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcE
Confidence 46899999999865 6899999999999999999999975 5789999999999999999998 79999999984 5
Q ss_pred eEEeCCCeecccCcccccCCCccC-CCCeee
Q psy3656 155 CVTALEKTWHTEHFFCAQCGKQFG-EAMVKF 184 (185)
Q Consensus 155 ~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~ 184 (185)
+|.|.++.||++||+|..|++.|. ++.|+.
T Consensus 85 ~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 115 (188)
T 1rut_X 85 VMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY 115 (188)
T ss_dssp EEEETTEEECGGGCBCTTTCCBCCTTCEEEE
T ss_pred EEEcCCCEEeCCCCeECCCCCCCCCCCeEEE
Confidence 789999999999999999999995 566653
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.2e-19 Score=126.93 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=71.9
Q ss_pred CCcccccccccccc-eeeecCcccccCCccCCCCCCCCC--CCCeeeeCCcCCCccchhhccCC--CCCccCCcccCceE
Q psy3656 82 KGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELG--TRNFFERDSRPYCEPDYHNLFSP--RCSYCNGPILDKCV 156 (185)
Q Consensus 82 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~~~~~~~~~--~C~~C~~~i~~~~~ 156 (185)
.++|..|+++|.+. ++.++++.||.+||+|..|+.+|. +..|+.++|++||+.||.++|++ +|+.|+++|.+..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 57899999999765 689999999999999999999996 35789999999999999999999 99999999998777
Q ss_pred EeCCC
Q psy3656 157 TALEK 161 (185)
Q Consensus 157 ~~~~~ 161 (185)
++.++
T Consensus 85 ~~~g~ 89 (122)
T 1m3v_A 85 MVVGE 89 (122)
T ss_dssp SSSSS
T ss_pred EEcCC
Confidence 66653
No 9
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3e-18 Score=109.95 Aligned_cols=70 Identities=31% Similarity=0.737 Sum_probs=65.1
Q ss_pred Ccccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCc-cchhhccCCCCCccCCccc
Q psy3656 83 GCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCE-PDYHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 83 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~-~~~~~~~~~~C~~C~~~i~ 152 (185)
++|..|+++|. ++.+.++++.||.+||+|..|+.+|....|+..+|++||. .||.++|+++|..|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 46999999996 8899999999999999999999999888899999999999 6999999999999997654
No 10
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.1e-17 Score=107.25 Aligned_cols=67 Identities=24% Similarity=0.558 Sum_probs=63.1
Q ss_pred CCccccccccccc----ceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccC
Q psy3656 82 KGCCSSCDKPIVG----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCN 148 (185)
Q Consensus 82 ~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~ 148 (185)
.++|..|+++|.+ +.+.++++.||.+||+|..|+.+|.+..|+..++++||+.||.++|+++|+.++
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 5689999999986 899999999999999999999999888899999999999999999999999875
No 11
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.8e-17 Score=107.36 Aligned_cols=66 Identities=36% Similarity=0.771 Sum_probs=60.5
Q ss_pred CCCCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 80 TQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 80 ~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
....+|..|+++|. ++.+.++++.||++||+|..|+.+|.+ .|+.+++++||+.||.++|+++|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 44678999999996 788999999999999999999999974 7999999999999999999999974
No 12
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.69 E-value=7e-18 Score=109.54 Aligned_cols=70 Identities=19% Similarity=0.511 Sum_probs=56.3
Q ss_pred CCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCcc
Q psy3656 82 KGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 151 (185)
Q Consensus 82 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i 151 (185)
..+|..|+++|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||+.||.++|+++|..|++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 578999999995 7889999999999999999999999888899999999999999999999999998764
No 13
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.2e-17 Score=114.03 Aligned_cols=67 Identities=24% Similarity=0.545 Sum_probs=61.7
Q ss_pred CCcccccccccccc-eeeecCcccccCCccCCCCCCCCCC--CCeeeeCCcCCCccchhhccCCCCCccC
Q psy3656 82 KGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGT--RNFFERDSRPYCEPDYHNLFSPRCSYCN 148 (185)
Q Consensus 82 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~yC~~~~~~~~~~~C~~C~ 148 (185)
.++|..|+++|.+. .+.++++.||.+||+|..|+.+|.. ..|+.++|++||+.||.++|+++|..|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 46799999999866 8999999999999999999999974 5799999999999999999999998886
No 14
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.7e-17 Score=109.84 Aligned_cols=66 Identities=36% Similarity=0.820 Sum_probs=62.0
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
...+|..|+++|.++.+.++++.||++||+|..|+..|.+..|+.+++++||+.||.++|+++|+.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 357899999999999999999999999999999999998888999999999999999999999974
No 15
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.6e-17 Score=104.52 Aligned_cols=66 Identities=29% Similarity=0.624 Sum_probs=61.7
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
+.++|..|+++|.++.+.++++.||.+||+|..|+.+|.+..|+.+++++||+.||.++|+++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 357899999999888899999999999999999999998888999999999999999999999963
No 16
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.2e-17 Score=104.14 Aligned_cols=66 Identities=32% Similarity=0.676 Sum_probs=61.6
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
...+|..|+++|.++.+.++++.||.+||+|..|+.+|.+..|+..++++||+.||.++|+++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 356899999999888899999999999999999999998888999999999999999999999974
No 17
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=5.2e-17 Score=105.09 Aligned_cols=58 Identities=28% Similarity=0.596 Sum_probs=54.6
Q ss_pred CCcCCCccchhhccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
+|++||+.||.++|+++|..|+++|.++.|.+.++.||++||+|..|+++|.++.|+.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTS 58 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEe
Confidence 5799999999999999999999999999999999999999999999999998877754
No 18
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=104.55 Aligned_cols=57 Identities=23% Similarity=0.532 Sum_probs=53.5
Q ss_pred CCcCCCccchhhccCCCCCccCCcccC-----ceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPILD-----KCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++++||+.||.++|+++|..|+++|.+ +.|.|.++.||++||+|..|+++|.+..|.
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~ 62 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV 62 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccE
Confidence 478999999999999999999999997 899999999999999999999999888764
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=7.2e-17 Score=103.45 Aligned_cols=66 Identities=32% Similarity=0.739 Sum_probs=61.3
Q ss_pred CCCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCc-cchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCE-PDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~-~~~~~~~~~~C~~ 146 (185)
..++|..|+++|. ++.+.++++.||.+||+|..|+.+|.+..|+.+++++||+ .||.++|+++|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 3578999999997 7899999999999999999999999988899999999999 7999999999964
No 20
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=105.82 Aligned_cols=58 Identities=21% Similarity=0.453 Sum_probs=54.1
Q ss_pred CCcCCCccchhhccCCCCCccCCccc--CceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
+|++||+.||.++|+++|..|+++|. +.+|.|+++.||++||+|..|+++|+++.|+.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 60 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTC 60 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEe
Confidence 58999999999999999999999999 67889999999999999999999999887753
No 21
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=4.9e-17 Score=103.10 Aligned_cols=65 Identities=34% Similarity=0.780 Sum_probs=60.7
Q ss_pred CCcccccccccc--cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 82 KGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 82 ~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
..+|..|+++|. ++.+.++++.||.+||+|..|+.+|....|+..++++||+.||.++|+++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 568999999996 57899999999999999999999999888999999999999999999999974
No 22
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=7.8e-17 Score=106.42 Aligned_cols=64 Identities=34% Similarity=0.645 Sum_probs=60.2
Q ss_pred CCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCC
Q psy3656 82 KGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~ 145 (185)
..+|..|++.|.++.+.++++.||.+||+|..|+..|....|+.+++++||+.||.++|++++.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4679999999998899999999999999999999999888899999999999999999999875
No 23
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=8.2e-17 Score=104.14 Aligned_cols=58 Identities=31% Similarity=0.729 Sum_probs=54.1
Q ss_pred CCcCCCccchhhccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
+|++||+.||.++|+++|..|+++|.++.|.+.++.||++||+|..|+++|.+..|+.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFE 58 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEE
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEe
Confidence 4789999999999999999999999999999999999999999999999998766653
No 24
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.5e-16 Score=103.25 Aligned_cols=55 Identities=35% Similarity=0.594 Sum_probs=51.2
Q ss_pred CcCCCccchhhccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCe
Q psy3656 128 SRPYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMV 182 (185)
Q Consensus 128 g~~yC~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~ 182 (185)
..+||+.||.++|+++|..|+++|.++.|.|.++.||++||+|..|+++|....|
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDR 56 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSC
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCE
Confidence 5689999999999999999999999999999999999999999999999975444
No 25
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.1e-16 Score=101.39 Aligned_cols=65 Identities=31% Similarity=0.758 Sum_probs=60.3
Q ss_pred CCcccccccccc--cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 82 KGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 82 ~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
.++|..|+++|. +..+.++++.||.+||+|..|+.+|....|+..++++||+.||.++|+++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 568999999996 35899999999999999999999999888999999999999999999999974
No 26
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.2e-16 Score=103.71 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=52.9
Q ss_pred CCcCCCccchhhccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccC-CCCee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFG-EAMVK 183 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~ 183 (185)
++.+||+.||.++|+++|..|+++|.++.|.|+++.||++||+|..|+++|. ++.|.
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~ 58 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYA 58 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEE
Confidence 3689999999999999999999999999999999999999999999999996 56665
No 27
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.4e-16 Score=101.06 Aligned_cols=64 Identities=25% Similarity=0.604 Sum_probs=59.0
Q ss_pred CCCccccccccccc----ceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCC
Q psy3656 81 QKGCCSSCDKPIVG----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 144 (185)
Q Consensus 81 ~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C 144 (185)
...+|..|+++|.+ +++.++++.||.+||+|..|+.+|.+..|+.+++++||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 35789999999975 78899999999999999999999988888899999999999999999876
No 28
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.7e-16 Score=102.90 Aligned_cols=56 Identities=27% Similarity=0.515 Sum_probs=53.0
Q ss_pred CCcCCCccchhhccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
+|++||++||. +++++|..|+++|.++.|.|.++.||++||+|..|+++|.++.|.
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~ 57 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFT 57 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeE
Confidence 68999999999 789999999999999999999999999999999999999988775
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=9.7e-17 Score=103.80 Aligned_cols=66 Identities=35% Similarity=0.832 Sum_probs=61.8
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
...+|..|+++|.++.+.++++.||.+||+|..|+.+|..+.|+.+++++||+.||.++|+++|+.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 14 FSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred cCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 357899999999889999999999999999999999998888999999999999999999999974
No 30
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.64 E-value=7.3e-17 Score=100.60 Aligned_cols=62 Identities=39% Similarity=0.956 Sum_probs=58.5
Q ss_pred CCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCC
Q psy3656 82 KGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 143 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~ 143 (185)
..+|..|+++|.++.+.++++.||.+||+|..|+.+|.+..|+.++|++||+.||.++|+++
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 57899999999988999999999999999999999998888999999999999999999875
No 31
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.5e-16 Score=104.38 Aligned_cols=69 Identities=26% Similarity=0.641 Sum_probs=62.8
Q ss_pred CCCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCC
Q psy3656 81 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 149 (185)
Q Consensus 81 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~ 149 (185)
....|..|++.|. .+.+.++++.||.+||+|..|+..|....|+..++++||+.||.++|+++|..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g 83 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEG 83 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCC
Confidence 4578999999996 47889999999999999999999998888999999999999999999999985544
No 32
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.7e-16 Score=100.09 Aligned_cols=65 Identities=31% Similarity=0.661 Sum_probs=60.1
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCC
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~ 145 (185)
+..+|..|+++|.++.+.++++.||.+||+|..|+.+|....|+.+++++||+.||.++|+++..
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 45789999999998899999999999999999999999988888999999999999999987654
No 33
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.7e-16 Score=102.87 Aligned_cols=66 Identities=30% Similarity=0.663 Sum_probs=60.2
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeee-CCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFER-DSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~g~~yC~~~~~~~~~~~C~~ 146 (185)
...+|..|+++|.++.+.++++.||++||+|..|+.+|.+..|+.. +|++||+.||.++|+++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 4578999999999889999999999999999999999987777765 78999999999999999974
No 34
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.3e-16 Score=102.39 Aligned_cols=66 Identities=27% Similarity=0.707 Sum_probs=58.5
Q ss_pred CCCCcccccccccc--cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCC
Q psy3656 80 TQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 80 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~ 145 (185)
....+|..|+++|. +..+.++|+.||.+||+|..|+.+|..+.|+.++|++||+.||.++|+++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 34678999999995 3567899999999999999999999888899999999999999999999996
No 35
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.3e-16 Score=101.76 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=53.0
Q ss_pred CCcCCCccchhhccCCCCCccCCccc--CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 127 DSRPYCEPDYHNLFSPRCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++.+||++||.++|+++|..|+++|. ++.|.+.++.||++||+|..|+++|.+..|+
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 59 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFF 59 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccE
Confidence 46899999999999999999999999 6789999999999999999999999887765
No 36
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.3e-16 Score=101.99 Aligned_cols=66 Identities=30% Similarity=0.645 Sum_probs=61.7
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
...+|..|+++|.++.+.++++.||.+||+|..|+.+|.+..|+.+++++||+.||.++|+++|++
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 14 FAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp SSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred cCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 457899999999888999999999999999999999998778999999999999999999999974
No 37
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=9.2e-17 Score=103.74 Aligned_cols=64 Identities=28% Similarity=0.590 Sum_probs=59.7
Q ss_pred CCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCC
Q psy3656 82 KGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~ 145 (185)
..+|..|+++|.++.+.++++.||.+||+|..|+..|....|+.+++++||+.||.++|++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4679999999998899999999999999999999999877899999999999999999998864
No 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.2e-16 Score=101.26 Aligned_cols=66 Identities=24% Similarity=0.455 Sum_probs=60.7
Q ss_pred CCCcccccccccc--cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 81 QKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 81 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
...+|..|+++|. +.++.++++.||.+||+|..|+.+|.+..|+..++++||+.||.++|+++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 3568999999997 56888999999999999999999998888999999999999999999999974
No 39
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.5e-16 Score=100.09 Aligned_cols=65 Identities=28% Similarity=0.465 Sum_probs=59.0
Q ss_pred CCCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCC
Q psy3656 80 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 80 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~ 145 (185)
....+|..|+++|.++.+.++++.||.+||+|..|+.+|... ++.++|++||..||.++|++++.
T Consensus 13 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 346789999999998899999999999999999999999866 46999999999999999998765
No 40
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.4e-15 Score=98.78 Aligned_cols=65 Identities=32% Similarity=0.661 Sum_probs=60.1
Q ss_pred CCCcccccccccc--cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCC
Q psy3656 81 QKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 81 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~ 145 (185)
...+|..|+++|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||+.||.++|+++|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 3578999999996 5679999999999999999999999988899999999999999999999886
No 41
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.3e-15 Score=96.48 Aligned_cols=66 Identities=26% Similarity=0.647 Sum_probs=58.6
Q ss_pred CCCccccccccccc--ceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCcc
Q psy3656 81 QKGCCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYC 147 (185)
Q Consensus 81 ~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C 147 (185)
...+|..|+++|.+ ..+.++++.||.+||+|..|+.+|.+..|+.+++++||+.||.++| .+|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 35789999999963 5889999999999999999999998778999999999999999998 566654
No 42
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.1e-15 Score=97.22 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=56.8
Q ss_pred CCCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCee--eeCCcCCCccchhhccCCCC
Q psy3656 81 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFF--ERDSRPYCEPDYHNLFSPRC 144 (185)
Q Consensus 81 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~--~~~g~~yC~~~~~~~~~~~C 144 (185)
...+|..|++.|+ .+.+.++++.||.+||+|..|+..|....|+ .+++++||+.||.++|+..+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 3578999999995 6788999999999999999999999888887 47999999999999987543
No 43
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.55 E-value=1.9e-15 Score=113.31 Aligned_cols=71 Identities=23% Similarity=0.592 Sum_probs=66.2
Q ss_pred CCCcccccccccc-cceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCcc
Q psy3656 81 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 151 (185)
Q Consensus 81 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i 151 (185)
+..+|..|+++|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||+.||.++|+++|..|++++
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 3568999999996 5788999999999999999999999888899999999999999999999999999985
No 44
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=6.3e-15 Score=93.64 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=56.6
Q ss_pred CCcccccccccccceeeecCcccccCCccCCCCCCCCC-CCCeeeeCCcCCCccchhhccCCC
Q psy3656 82 KGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELG-TRNFFERDSRPYCEPDYHNLFSPR 143 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~yC~~~~~~~~~~~ 143 (185)
.++|..|+++|.++.+.++++.||.+||+|..|+.+|. +..|+..++++||..||..++...
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 56899999999989999999999999999999999998 667889999999999999887643
No 45
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.52 E-value=9.4e-15 Score=102.04 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=63.5
Q ss_pred Ccccccccccc--cceeeecCcccccCCccCCCCCCCCC-CCCeeeeCCcCCCccchhhccCCCCCccCCcccC
Q psy3656 83 GCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELG-TRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD 153 (185)
Q Consensus 83 ~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~~ 153 (185)
++|..|++.|. +..+.++++.||..||+|..|++.|. +..|+..++++||..||.++|+++|..++..+.+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~ 82 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSG 82 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCcc
Confidence 37999999996 45779999999999999999999995 4468899999999999999999999999887763
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.52 E-value=6.7e-15 Score=102.75 Aligned_cols=61 Identities=25% Similarity=0.651 Sum_probs=55.3
Q ss_pred CCCcccccccccccc-eeeecCcccccCCccCCCCCCCCC--CCCeeeeCCcCCCccchhhccC
Q psy3656 81 QKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELG--TRNFFERDSRPYCEPDYHNLFS 141 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~~~~~~~~ 141 (185)
...+|..|+++|.+. ++.++++.||..||+|..|+..|. +..|+.++|++||+.||.++||
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 357899999999765 699999999999999999999996 3579999999999999999985
No 47
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.51 E-value=6.5e-15 Score=93.01 Aligned_cols=62 Identities=27% Similarity=0.762 Sum_probs=55.5
Q ss_pred CCCCcccccccccc-cc-eeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccC
Q psy3656 80 TQKGCCSSCDKPIV-GQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141 (185)
Q Consensus 80 ~~~~~C~~C~~~i~-~~-~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~ 141 (185)
....+|..|+++|. ++ .+.++++.||.+||+|..|+.+|..+.|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 34678999999996 44 5689999999999999999999988889999999999999999885
No 48
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.8e-14 Score=93.25 Aligned_cols=65 Identities=22% Similarity=0.441 Sum_probs=58.3
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCC-CCee-eeCCcCCCccchhhccCCCCC
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGT-RNFF-ERDSRPYCEPDYHNLFSPRCS 145 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~-~~~~-~~~g~~yC~~~~~~~~~~~C~ 145 (185)
...+|..|+++|.++.+.++++.||.+||+|..|+..|.. ..|. ..++++||+.||.++|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp SSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred cCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 3568999999999889999999999999999999999974 5566 589999999999999998775
No 49
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=90.22 Aligned_cols=58 Identities=28% Similarity=0.696 Sum_probs=53.5
Q ss_pred CCCccccccccccc-----ceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhh
Q psy3656 81 QKGCCSSCDKPIVG-----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN 138 (185)
Q Consensus 81 ~~~~C~~C~~~i~~-----~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~ 138 (185)
..++|..|+++|.+ +.+.++++.||.+||+|..|+.+|.+..|+.+++++||+.||.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 45789999999985 78999999999999999999999988889999999999999965
No 50
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.45 E-value=3.5e-14 Score=88.08 Aligned_cols=57 Identities=25% Similarity=0.546 Sum_probs=52.1
Q ss_pred Ccccccccccc--cceeeecCcccc--cCCccCCCCCCCCCCCCeeeeCCcCCC-ccchhhc
Q psy3656 83 GCCSSCDKPIV--GQVITALGKTWH--PEHFICTHCNQELGTRNFFERDSRPYC-EPDYHNL 139 (185)
Q Consensus 83 ~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~yC-~~~~~~~ 139 (185)
++|..|+++|. ++.+.++++.|| .+||+|..|+.+|.+..|+.++|++|| .+||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 57999999997 689999999999 999999999999988889999999999 7888653
No 51
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=3.8e-13 Score=85.33 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=41.9
Q ss_pred hccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccC-CCCee
Q psy3656 138 NLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFG-EAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~ 183 (185)
.+|+++|..|+++|.++.|.|+++.||++||+|..|+++|. ++.|.
T Consensus 2 s~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~ 48 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMY 48 (73)
T ss_dssp CCSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCE
T ss_pred CcCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeE
Confidence 35789999999999999999999999999999999999998 66664
No 52
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=5e-13 Score=86.39 Aligned_cols=60 Identities=30% Similarity=0.579 Sum_probs=52.2
Q ss_pred CCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCC-cCCCccchhhccC
Q psy3656 82 KGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDS-RPYCEPDYHNLFS 141 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g-~~yC~~~~~~~~~ 141 (185)
..+|..|+++|.++.+.++++.||.+||+|..|+.+|..+.++..++ .+||..||.+++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 46899999999988999999999999999999999998777665555 4799999987764
No 53
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=1.4e-12 Score=86.00 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=48.0
Q ss_pred CCCccchhhccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 130 PYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 130 ~yC~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
..+...+...+.++|..|+++|.++.|.+.++.||++||+|..|++.|.+..|+.
T Consensus 14 ~~~~~~~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 68 (90)
T 2dar_A 14 QRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVE 68 (90)
T ss_dssp BCCEEECTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEE
T ss_pred hhcccCCCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEe
Confidence 3445556678889999999999999999999999999999999999998877753
No 54
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.33 E-value=5.6e-13 Score=99.52 Aligned_cols=86 Identities=22% Similarity=0.429 Sum_probs=65.7
Q ss_pred ccccccccccc--ceeeecCcccccCCccCCCCCCCCC-CCCeeeeCCcCCCccchhhccCCCCCccCCc----------
Q psy3656 84 CCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELG-TRNFFERDSRPYCEPDYHNLFSPRCSYCNGP---------- 150 (185)
Q Consensus 84 ~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~---------- 150 (185)
+|..|+++|.. .++.++++.||..||+|..|++.|. +..|+..++++||..||.++|+++|...+..
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~~~~~~~~~~~v 150 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGDV 150 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC----------------CCC
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCCCCcccccCCcc
Confidence 69999999963 4678999999999999999999996 4568899999999999999999999887752
Q ss_pred -ccCceEEeCCCeecccCccc
Q psy3656 151 -ILDKCVTALEKTWHTEHFFC 170 (185)
Q Consensus 151 -i~~~~~~~~~~~~H~~Cf~C 170 (185)
+.++ ..+++..||++..+.
T Consensus 151 ~vvge-p~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 151 MVVGE-PTLMGGEFGDEDERL 170 (188)
T ss_dssp EECCC-CEETTCCCCCTTEEE
T ss_pred cccCC-CcccCCCCCCCCCce
Confidence 2233 356788999998884
No 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=1.3e-12 Score=83.38 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=43.0
Q ss_pred hccCCCCCccCCcccC----ceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 138 NLFSPRCSYCNGPILD----KCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
++|+++|..|+++|.+ +.|.++++.||++||+|..|+++|.+..|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~ 52 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT 52 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEE
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEe
Confidence 4688999999999997 8999999999999999999999999887753
No 56
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.31 E-value=8.8e-13 Score=81.86 Aligned_cols=46 Identities=39% Similarity=0.779 Sum_probs=42.3
Q ss_pred hccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 138 NLFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++++++|..|+++|.++.|.|.++.||++||+|..|+++|.++.|+
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 47 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY 47 (66)
T ss_dssp CCCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCE
T ss_pred CcCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceE
Confidence 3577999999999999999999999999999999999999887765
No 57
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=2.7e-12 Score=80.29 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=42.3
Q ss_pred ccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 139 LFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
.++++|..|+++|.++.|.+.++.||++||+|..|+++|.++.|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA 48 (69)
T ss_dssp CCCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEE
T ss_pred CCcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEe
Confidence 5678999999999999999999999999999999999998887753
No 58
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=2.9e-12 Score=80.41 Aligned_cols=46 Identities=35% Similarity=0.608 Sum_probs=42.2
Q ss_pred ccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 139 LFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
+++++|..|+++|.++.|.++++.||++||+|..|+++|.+..|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTA 48 (70)
T ss_dssp CCCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEE
T ss_pred CCCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEe
Confidence 5678999999999999999999999999999999999998877753
No 59
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=3.4e-12 Score=80.51 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=41.7
Q ss_pred ccCCCCCccCCcccC----ceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 139 LFSPRCSYCNGPILD----KCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
.++++|..|+++|.+ +.|.++++.||++||+|..|+++|.+..|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~ 52 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT 52 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEE
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEe
Confidence 467899999999996 7899999999999999999999999887763
No 60
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=5.5e-12 Score=79.49 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=41.7
Q ss_pred hccCCCCCccCCccc--CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 138 NLFSPRCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++|+++|..|+++|. +..|.+.++.||++||+|..|+++|.+..|.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 49 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFI 49 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEE
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccC
Confidence 467899999999999 4689999999999999999999999887765
No 61
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.25 E-value=4.8e-12 Score=79.78 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=41.9
Q ss_pred hccCCCCCccCCccc--CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 138 NLFSPRCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++++++|..|+++|. ++.|.+.++.||++||+|..|+++|.+..|+
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 49 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFV 49 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEE
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccC
Confidence 467899999999999 6889999999999999999999999887765
No 62
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.25 E-value=5.3e-12 Score=79.19 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=40.7
Q ss_pred cCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 140 FSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 140 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
+.++|..|+++|.++.|.+.++.||++||+|..|+++|.+..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~ 47 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFV 47 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCE
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccE
Confidence 45899999999999999999999999999999999999887765
No 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.24 E-value=4e-12 Score=78.67 Aligned_cols=45 Identities=29% Similarity=0.456 Sum_probs=40.6
Q ss_pred cCCCCCccCCccc--CceEEeCCCeec--ccCcccccCCCccCCCCeee
Q psy3656 140 FSPRCSYCNGPIL--DKCVTALEKTWH--TEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 140 ~~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~ 184 (185)
|+++|..|+++|. ++.|.++++.|| ++||+|..|+++|.+..|+.
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~ 49 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 49 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEE
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEE
Confidence 5688999999999 689999999999 99999999999999887753
No 64
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=1.2e-11 Score=77.95 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=41.2
Q ss_pred ccCCCCCccCCcccC--ceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 139 LFSPRCSYCNGPILD--KCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
.++++|..|+++|.+ ..|.++++.||++||+|..|+++|.++.|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYA 50 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEE
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEe
Confidence 467899999999984 6899999999999999999999998887754
No 65
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=1.2e-11 Score=78.87 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=41.7
Q ss_pred hccCCCCCccCCccc-CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 138 NLFSPRCSYCNGPIL-DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
..+.++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|.
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~ 52 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA 52 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCE
T ss_pred CCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceE
Confidence 356789999999998 7899999999999999999999999887765
No 66
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=9.7e-12 Score=79.95 Aligned_cols=44 Identities=27% Similarity=0.541 Sum_probs=40.3
Q ss_pred ccCCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCe
Q psy3656 139 LFSPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMV 182 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~ 182 (185)
.+.++|..|+++|.++.|.++++.||++||+|..|+++|.+..|
T Consensus 13 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f 56 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR 56 (79)
T ss_dssp CCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE
T ss_pred cCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCE
Confidence 44589999999999999999999999999999999999987754
No 67
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.18 E-value=9.5e-12 Score=86.68 Aligned_cols=49 Identities=31% Similarity=0.603 Sum_probs=43.1
Q ss_pred hhhccCC--CCCccCCccc--CceEEeCCCeecccCcccccCCCcc-CCCCeee
Q psy3656 136 YHNLFSP--RCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQF-GEAMVKF 184 (185)
Q Consensus 136 ~~~~~~~--~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~ 184 (185)
|.++|+. +|..|+++|. +.+|.|.++.||++||+|..|+++| .++.|+.
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 54 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL 54 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEE
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEe
Confidence 6678988 9999999998 5678999999999999999999999 5666654
No 68
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=7.2e-12 Score=80.51 Aligned_cols=44 Identities=25% Similarity=0.575 Sum_probs=39.9
Q ss_pred CCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 141 SPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 141 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
.++|..|+++|.++.|.|+++.||++||+|..|+++|.+..|+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFF 58 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEE
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEe
Confidence 47999999999999999999999999999999999997766653
No 69
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=2.2e-11 Score=79.98 Aligned_cols=44 Identities=32% Similarity=0.594 Sum_probs=40.4
Q ss_pred CCCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 141 SPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 141 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
.++|..|+++|.++.|.|+++.||++||+|..|++.|.+..|+.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 68 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFF 68 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEE
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEe
Confidence 47899999999999999999999999999999999998876653
No 70
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.13 E-value=4.2e-11 Score=76.25 Aligned_cols=42 Identities=31% Similarity=0.748 Sum_probs=38.8
Q ss_pred CCCCccCCccc-CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 142 PRCSYCNGPIL-DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 142 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++|..|+++|. ++.|.+.++.||++||+|..|+++|.+..|.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~ 43 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA 43 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEE
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceE
Confidence 57999999998 8899999999999999999999999887765
No 71
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.13 E-value=3.2e-11 Score=75.80 Aligned_cols=47 Identities=32% Similarity=0.595 Sum_probs=40.3
Q ss_pred hhccCCCCCccCCcccC--ceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 137 HNLFSPRCSYCNGPILD--KCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 137 ~~~~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
...++++|..|+++|.+ .+|.+.++.||++||+|..|+++|....|+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~ 55 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCE
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeE
Confidence 34677999999999984 367899999999999999999999766654
No 72
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.12 E-value=3.6e-11 Score=83.90 Aligned_cols=59 Identities=24% Similarity=0.556 Sum_probs=53.3
Q ss_pred CCcccccccccc--cceeeecCcccc--cCCccCCCCCCCCCCCCeeeeCCcCCCccchhhcc
Q psy3656 82 KGCCSSCDKPIV--GQVITALGKTWH--PEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF 140 (185)
Q Consensus 82 ~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~ 140 (185)
.++|..|+++|. +..+.++++.|| .+||+|..|+++|.+..|+..+|++||..+|.++|
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 467999999996 468999999999 99999999999998778889999999998888766
No 73
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.11 E-value=1.6e-11 Score=86.32 Aligned_cols=58 Identities=28% Similarity=0.537 Sum_probs=52.2
Q ss_pred ccccccccccc--ceeeecCcccccCCccCCCCCCCCC-CCCeeeeCCcCCCccchhhccC
Q psy3656 84 CCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELG-TRNFFERDSRPYCEPDYHNLFS 141 (185)
Q Consensus 84 ~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~yC~~~~~~~~~ 141 (185)
+|..|+++|.+ ..+.++++.||.+||+|..|+..|. +..|+..++++||..||.++|+
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 79999999964 4788999999999999999999995 5568899999999999998875
No 74
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=5.6e-11 Score=75.79 Aligned_cols=46 Identities=35% Similarity=0.663 Sum_probs=40.0
Q ss_pred hccCCCCCccCCccc--CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 138 NLFSPRCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
..++++|..|+++|. +.+|.+.++.||++||+|..|+++|.+..|+
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 55 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSE
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeE
Confidence 355689999999996 5678999999999999999999999776654
No 75
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=8.8e-11 Score=75.93 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=38.4
Q ss_pred CCCCccCCccc-CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 142 PRCSYCNGPIL-DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 142 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
++|..|+++|. .+.|.++++.||++||+|..|+++|....|.
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~ 58 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYE 58 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEE
T ss_pred CCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCcee
Confidence 78999999996 5778899999999999999999999888776
No 76
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.05 E-value=1.3e-10 Score=74.86 Aligned_cols=44 Identities=20% Similarity=0.494 Sum_probs=38.8
Q ss_pred cCCCCCccCCccc-CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 140 FSPRCSYCNGPIL-DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 140 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
..++|..|+++|. ++.|.+.++.||++||+|..|+++|.+..|.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 50 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA 50 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCE
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeE
Confidence 3589999999996 7889999999999999999999999887765
No 77
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.05 E-value=1.7e-10 Score=74.28 Aligned_cols=42 Identities=26% Similarity=0.593 Sum_probs=37.6
Q ss_pred CCCCCccCCccc-CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 141 SPRCSYCNGPIL-DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 141 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
.++|..|+++|. ++.|.++++.||++||+|..|+++|.+ .|+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~ 57 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYI 57 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCE
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeE
Confidence 378999999997 788999999999999999999999986 443
No 78
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=80.98 Aligned_cols=46 Identities=30% Similarity=0.671 Sum_probs=39.8
Q ss_pred hccCCCCCccCCcccCc-eEEeCCCeecccCcccccCCCccC--CCCee
Q psy3656 138 NLFSPRCSYCNGPILDK-CVTALEKTWHTEHFFCAQCGKQFG--EAMVK 183 (185)
Q Consensus 138 ~~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~ 183 (185)
..+.++|..|+++|.+. .|.|+++.||++||+|..|++.|. +..|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~ 106 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY 106 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCB
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceE
Confidence 34568999999999987 589999999999999999999996 45554
No 79
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.03 E-value=2e-10 Score=75.70 Aligned_cols=44 Identities=16% Similarity=0.418 Sum_probs=39.3
Q ss_pred cCCCCCccCCcccC-ceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 140 FSPRCSYCNGPILD-KCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 140 ~~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
...+|..|+++|.+ +.|.++++.||++||+|..|+++|....|+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~ 58 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 58 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcE
Confidence 45899999999985 788999999999999999999999877654
No 80
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.02 E-value=2.3e-10 Score=76.69 Aligned_cols=45 Identities=29% Similarity=0.502 Sum_probs=40.8
Q ss_pred ccCCCCCccCCccc--CceEEeCCCeecccCcccccCCCccCCCCee
Q psy3656 139 LFSPRCSYCNGPIL--DKCVTALEKTWHTEHFFCAQCGKQFGEAMVK 183 (185)
Q Consensus 139 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 183 (185)
.++++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~ 49 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV 49 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCE
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeE
Confidence 46789999999997 6889999999999999999999999887765
No 81
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.02 E-value=2.8e-10 Score=84.33 Aligned_cols=56 Identities=25% Similarity=0.533 Sum_probs=47.3
Q ss_pred CCcCCCccchh---hccCCCCCccCCcccCc-eEEeCCCeecccCcccccCCCccCCCCe
Q psy3656 127 DSRPYCEPDYH---NLFSPRCSYCNGPILDK-CVTALEKTWHTEHFFCAQCGKQFGEAMV 182 (185)
Q Consensus 127 ~g~~yC~~~~~---~~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~ 182 (185)
++..||..++. ....++|..|+++|.+. ++.|.++.||++||+|..|+++|++..|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f 102 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF 102 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce
Confidence 56678887765 34458999999999976 5789999999999999999999988765
No 82
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.02 E-value=1.3e-10 Score=85.16 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=62.4
Q ss_pred CCccccccccccc-c-eeeecCcccccCCccCCCCCCCCCCC-Cee-eeCCcCCCccchhhccCCCCC--ccCCcccCce
Q psy3656 82 KGCCSSCDKPIVG-Q-VITALGKTWHPEHFICTHCNQELGTR-NFF-ERDSRPYCEPDYHNLFSPRCS--YCNGPILDKC 155 (185)
Q Consensus 82 ~~~C~~C~~~i~~-~-~~~~~~~~~H~~Cf~C~~C~~~L~~~-~~~-~~~g~~yC~~~~~~~~~~~C~--~C~~~i~~~~ 155 (185)
.++|..|+++|.+ + ++.++++.||.+||+|..|+..|..+ .|+ ..+|++||..||.+.+...+. ....+. ..
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rpr--t~ 142 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGG--TP 142 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC------------EE
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCC--Cc
Confidence 4679999999964 4 56899999999999999999999744 555 568999999999988765442 222222 25
Q ss_pred EEeCCCeecccCcc
Q psy3656 156 VTALEKTWHTEHFF 169 (185)
Q Consensus 156 ~~~~~~~~H~~Cf~ 169 (185)
+.+....+|...|.
T Consensus 143 ~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 143 MVAASPERHDGGLQ 156 (169)
T ss_dssp EECCCCEECCSSCC
T ss_pred ccHHHHHHHHHHHh
Confidence 56666777777765
No 83
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.93 E-value=6.3e-10 Score=76.32 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=37.6
Q ss_pred CCCCccCCcccCc-eEEeCCCeecccCcccccCCCccCC--CCee
Q psy3656 142 PRCSYCNGPILDK-CVTALEKTWHTEHFFCAQCGKQFGE--AMVK 183 (185)
Q Consensus 142 ~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~ 183 (185)
++|..|+++|.+. .|.|+++.||++||+|..|+++|+. ..|+
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~ 48 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY 48 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCC
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeE
Confidence 6899999999987 7899999999999999999999974 4553
No 84
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=4.9e-10 Score=77.80 Aligned_cols=45 Identities=31% Similarity=0.683 Sum_probs=39.0
Q ss_pred ccCCCCCccCCcccCc-eEEeCCCeecccCcccccCCCccC--CCCee
Q psy3656 139 LFSPRCSYCNGPILDK-CVTALEKTWHTEHFFCAQCGKQFG--EAMVK 183 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~ 183 (185)
++.++|..|+++|.+. .|.|+++.||++||+|..|+++|+ +..|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~ 50 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY 50 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEE
Confidence 4568999999999987 589999999999999999999997 34453
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.17 E-value=6e-07 Score=46.78 Aligned_cols=28 Identities=29% Similarity=0.684 Sum_probs=25.4
Q ss_pred CCcccccccccc-cceeeecCcccccCCc
Q psy3656 82 KGCCSSCDKPIV-GQVITALGKTWHPEHF 109 (185)
Q Consensus 82 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf 109 (185)
.+.|..|++.|+ ++.+.++|+.||+.||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 467999999995 7899999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.86 E-value=4.5e-06 Score=43.39 Aligned_cols=28 Identities=32% Similarity=0.802 Sum_probs=25.0
Q ss_pred CCCCCccCCccc-CceEEeCCCeecccCc
Q psy3656 141 SPRCSYCNGPIL-DKCVTALEKTWHTEHF 168 (185)
Q Consensus 141 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf 168 (185)
.++|..|++.|. .+.|.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 578999999997 4778899999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.22 E-value=0.02 Score=39.01 Aligned_cols=91 Identities=15% Similarity=0.381 Sum_probs=59.2
Q ss_pred CCcccccccccccc-------eeeecCcccccCCc--------cCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCc
Q psy3656 82 KGCCSSCDKPIVGQ-------VITALGKTWHPEHF--------ICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 146 (185)
Q Consensus 82 ~~~C~~C~~~i~~~-------~~~~~~~~~H~~Cf--------~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~ 146 (185)
...|..|...+.+. ++..=|-.||..|+ .|..|+..+....+... | ...-...|..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l----~-----i~~~~~~C~i 77 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI----Y-----IGSGTVSCPI 77 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC----B-----CSSSSCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc----c-----cCCCCCCCCC
Confidence 45699998876332 34444777777776 78999998865544321 1 1112356888
Q ss_pred cCCcccCc-------eEEeCCCeecccCc--------ccccCCCccCCCC
Q psy3656 147 CNGPILDK-------CVTALEKTWHTEHF--------FCAQCGKQFGEAM 181 (185)
Q Consensus 147 C~~~i~~~-------~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 181 (185)
|.+.+... .+..-++.||..|. .|-.|...|..+.
T Consensus 78 C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 78 CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 88776532 34456889999886 5999999886554
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.38 E-value=0.4 Score=31.78 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=46.9
Q ss_pred CCCcccccccccc-cceee--ecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCcccC-ceE
Q psy3656 81 QKGCCSSCDKPIV-GQVIT--ALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD-KCV 156 (185)
Q Consensus 81 ~~~~C~~C~~~i~-~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~~-~~~ 156 (185)
....|..|+..-. .+.+. .=++.||..|+.-.. .+ ...+.-+|..|. .|.+|++.-.+ .+|
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~~ll 70 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDSKML 70 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCTTEE
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCCCee
Confidence 4567999987542 22233 336889998865432 11 234567787773 68899887653 344
Q ss_pred E--eCCCeecccCccc
Q psy3656 157 T--ALEKTWHTEHFFC 170 (185)
Q Consensus 157 ~--~~~~~~H~~Cf~C 170 (185)
. .-++.||..|..-
T Consensus 71 ~Cd~C~~~yH~~Cl~p 86 (111)
T 2ysm_A 71 VCDTCDKGYHTFCLQP 86 (111)
T ss_dssp ECSSSCCEEEGGGSSS
T ss_pred ECCCCCcHHhHHhcCC
Confidence 3 3368999988763
No 89
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.25 E-value=0.36 Score=28.02 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=5.4
Q ss_pred cccCCCccCCC
Q psy3656 170 CAQCGKQFGEA 180 (185)
Q Consensus 170 C~~C~~~l~~~ 180 (185)
|..|...+..+
T Consensus 47 CP~Cr~~~~~~ 57 (64)
T 2xeu_A 47 CPTCRKKINHK 57 (64)
T ss_dssp CTTTCCBCTTT
T ss_pred CCCCCccCCcc
Confidence 55555555433
No 90
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.25 E-value=0.22 Score=29.77 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=12.9
Q ss_pred eCCCeecccCc--------ccccCCCccCCCC
Q psy3656 158 ALEKTWHTEHF--------FCAQCGKQFGEAM 181 (185)
Q Consensus 158 ~~~~~~H~~Cf--------~C~~C~~~l~~~~ 181 (185)
.-++.||.+|+ +|..|...+..+.
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 34555555555 4666666654443
No 91
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=85.20 E-value=1 Score=30.02 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=43.5
Q ss_pred Cccccccccc--------ccceeeec--CcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCccc
Q psy3656 83 GCCSSCDKPI--------VGQVITAL--GKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 83 ~~C~~C~~~i--------~~~~~~~~--~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~ 152 (185)
+.|..|...- .++.+.-. ++.||..|+.-.. .. .-....+.-+|..| ..|.+|++.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~-----~~-~~~~~~~~W~C~~C------~~C~~C~~~~~ 69 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL-----NM-TEAVKTYKWQCIEC------KSCILCGTSEN 69 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH-----HH-HHHHHHTTCCCGGG------CCCTTTTCCTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh-----hh-hhccCCCccCcccc------CccCcccccCC
Confidence 3577776543 12344333 6788888753110 00 00234556778777 46999988765
Q ss_pred C-ceEE--eCCCeecccCcc
Q psy3656 153 D-KCVT--ALEKTWHTEHFF 169 (185)
Q Consensus 153 ~-~~~~--~~~~~~H~~Cf~ 169 (185)
+ .+|. .-++.||..|..
T Consensus 70 ~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 70 DDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp TTTEEECSSSCCEEETTTSS
T ss_pred CCceEEcCCCCccccccccC
Confidence 3 4444 335899999876
No 92
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.77 E-value=1.2 Score=29.48 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=15.5
Q ss_pred eCCcCCCccchhhccCCCCCccCCccc
Q psy3656 126 RDSRPYCEPDYHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 126 ~~g~~yC~~~~~~~~~~~C~~C~~~i~ 152 (185)
.=|..||..|..+.+...|..|...+.
T Consensus 40 ~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp SSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 344555666655554456777766654
No 93
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=82.71 E-value=0.86 Score=25.51 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=3.7
Q ss_pred CCeecccC
Q psy3656 160 EKTWHTEH 167 (185)
Q Consensus 160 ~~~~H~~C 167 (185)
++.||.+|
T Consensus 28 gH~fc~~C 35 (55)
T 2ecm_A 28 GHLLHRTC 35 (55)
T ss_dssp SCEEETTH
T ss_pred CCcccHHH
Confidence 44444444
No 94
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.89 E-value=0.51 Score=27.81 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhcc---CCCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~---~~~C~~C~~~i~~ 153 (185)
+.|..|...+.. .+...=|..||..|..+.+ ...|..|+..|..
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCS-PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESS-CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcC-eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456666555432 2234566778888877654 2568888887763
No 95
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.63 E-value=1.1 Score=28.07 Aligned_cols=9 Identities=22% Similarity=0.962 Sum_probs=5.9
Q ss_pred ccccccccc
Q psy3656 84 CCSSCDKPI 92 (185)
Q Consensus 84 ~C~~C~~~i 92 (185)
.|..|+.+|
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 467776665
No 96
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.34 E-value=0.7 Score=27.64 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=23.0
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccchhhccC-----CCCCccCCcccC
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS-----PRCSYCNGPILD 153 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~-----~~C~~C~~~i~~ 153 (185)
.|..|...+. ......=|..||..|..+.+. ..|..|.+.|..
T Consensus 22 ~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 22 ICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp BCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred EeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4444444332 122234556667766655442 368888877753
No 97
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.54 E-value=0.89 Score=27.62 Aligned_cols=46 Identities=11% Similarity=0.246 Sum_probs=30.4
Q ss_pred CccCCCCCCCCCCCCeeeeCCcCCCccchhhcc---CCCCCccCCcccCc
Q psy3656 108 HFICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILDK 154 (185)
Q Consensus 108 Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~---~~~C~~C~~~i~~~ 154 (185)
-|.|..|...+. ..+...-|..||..|..+.+ ...|..|++.+...
T Consensus 8 ~~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 8 YFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cCCCCCcccccc-CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 356777766553 33455678888888866544 24688888887643
No 98
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.42 E-value=1.8 Score=27.51 Aligned_cols=51 Identities=24% Similarity=0.583 Sum_probs=30.6
Q ss_pred CCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhh--ccC-CCCCccCCcc
Q psy3656 81 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN--LFS-PRCSYCNGPI 151 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~--~~~-~~C~~C~~~i 151 (185)
...+|..|+..|- +.+.|..| -.|..|.-++ |+.||.. +-+ ..|..|+..-
T Consensus 15 ~~qiCqiCGD~VG---~~~~Ge~F----VAC~eC~FPv-------------CrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIG---LTVEGDLF----VACNECGFPA-------------CRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCC---BCSSSSBC----CSCSSSCCCC-------------CHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccc---cCCCCCEE----EeeeccCChh-------------hHHHHHHHHhccCccccccCCcc
Confidence 3578999998872 23444433 2556665555 7877753 222 5677777654
No 99
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.15 E-value=1.1 Score=26.73 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=28.4
Q ss_pred ccCCCCCCCCCCCCeee-eCCcCCCccchhhcc--CCCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFE-RDSRPYCEPDYHNLF--SPRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~--~~~C~~C~~~i~~ 153 (185)
+.|..|...+.. .... .=|..||..|..+.+ ...|..|.+.|..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 567777666643 3333 677778887765443 3678888877764
No 100
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.73 E-value=0.52 Score=27.77 Aligned_cols=10 Identities=0% Similarity=0.152 Sum_probs=4.7
Q ss_pred CCCeecccCc
Q psy3656 159 LEKTWHTEHF 168 (185)
Q Consensus 159 ~~~~~H~~Cf 168 (185)
-++.||.+|+
T Consensus 40 CgH~fc~~Ci 49 (69)
T 2ea6_A 40 CGHVFCSQCL 49 (69)
T ss_dssp SSCEEEHHHH
T ss_pred CCChhcHHHH
Confidence 3444554444
No 101
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.69 E-value=1.8 Score=26.38 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=25.7
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhcc--------CCCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--------SPRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--------~~~C~~C~~~i~~ 153 (185)
+.|..|...+.. .....=|..||..|..+.+ ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345555444422 2233456777887765432 4678899888764
No 102
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.26 E-value=1 Score=27.61 Aligned_cols=43 Identities=28% Similarity=0.628 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhcc--CCCCCccCCccc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPIL 152 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--~~~C~~C~~~i~ 152 (185)
+.|..|...+.. .+...=|..||..|..+.+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 567777666632 3445566777777765433 256777777765
No 103
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.00 E-value=0.66 Score=27.28 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCCccCCcccCceEEeCCCeecccCc---------ccccCCCccCCCC
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHF---------FCAQCGKQFGEAM 181 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~~ 181 (185)
..|..|...+....+..-++.||.+|+ +|..|...+..+.
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 358888887776555567888888775 4888999886654
No 104
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.48 E-value=0.99 Score=27.02 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=4.1
Q ss_pred CCCeecccC
Q psy3656 159 LEKTWHTEH 167 (185)
Q Consensus 159 ~~~~~H~~C 167 (185)
-++.||.+|
T Consensus 34 CgH~fC~~C 42 (72)
T 2djb_A 34 CLHTFCKSC 42 (72)
T ss_dssp SCCEECHHH
T ss_pred CCCHHHHHH
Confidence 344444444
No 105
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.22 E-value=1.3 Score=26.31 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCccCCcccCceEEeCCCeecccCc-----------ccccCCCccCCCC
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHF-----------FCAQCGKQFGEAM 181 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf-----------~C~~C~~~l~~~~ 181 (185)
..|..|...+....+..-++.||.+|+ +|..|...+..+.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 468888887776555567888888885 5888888876543
No 106
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.02 E-value=2.6 Score=23.88 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCccc
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~ 152 (185)
.|..|...+.. .....=|..||..|..+ ....|..|.+.+.
T Consensus 8 ~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 8 RCQQCQAEAKC-PKLLPCLHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp SCSSSCSSCBC-CSCSTTSCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CceEeCCccCC-eEEcCCCCcccHHHHcc-CCCCCCcCCcEee
Confidence 44455444322 12233445556655443 2356777776654
No 107
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.65 E-value=1.5 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=28.5
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhccC--CCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~--~~C~~C~~~i~~ 153 (185)
+.|..|...+.. .....=|..||..|..+.+. ..|..|...|..
T Consensus 16 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 577777766633 34456777788887665432 568888777753
No 108
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=75.19 E-value=1.9 Score=25.91 Aligned_cols=43 Identities=14% Similarity=0.418 Sum_probs=29.7
Q ss_pred ccCCCCCCCCCCCCeeee-CCcCCCccchhhccC----CCCCccCCccc
Q psy3656 109 FICTHCNQELGTRNFFER-DSRPYCEPDYHNLFS----PRCSYCNGPIL 152 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~-~g~~yC~~~~~~~~~----~~C~~C~~~i~ 152 (185)
+.|..|...+. ..+... =|..||..|..+.+. ..|..|.+.+.
T Consensus 16 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 57888877664 344555 588899888765542 47888888654
No 109
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=75.11 E-value=1.4 Score=28.98 Aligned_cols=42 Identities=17% Similarity=0.430 Sum_probs=22.9
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccchhhccC---CCCCccCCccc
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPIL 152 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~---~~C~~C~~~i~ 152 (185)
.|..|...+. ......=|+.||..|..+.+. ..|..|...+.
T Consensus 17 ~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 17 QCGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp BCTTTCSBCS-SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCccCCcccC-ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4444444332 223334556667666655442 46888888764
No 110
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=74.43 E-value=1.7 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCcCCCccchhhcc---CCCCCccCCcccCce
Q psy3656 127 DSRPYCEPDYHNLF---SPRCSYCNGPILDKC 155 (185)
Q Consensus 127 ~g~~yC~~~~~~~~---~~~C~~C~~~i~~~~ 155 (185)
=|..+|..|+.+.. ...|..|.+++..+.
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 56777888876554 357999988887543
No 111
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.19 E-value=2.9 Score=25.21 Aligned_cols=46 Identities=9% Similarity=0.293 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCCCC-e-eeeCCcCCCccchhhccC--CCCCccCCcccCc
Q psy3656 109 FICTHCNQELGTRN-F-FERDSRPYCEPDYHNLFS--PRCSYCNGPILDK 154 (185)
Q Consensus 109 f~C~~C~~~L~~~~-~-~~~~g~~yC~~~~~~~~~--~~C~~C~~~i~~~ 154 (185)
+.|..|...+.... . ...=+..||..|..+.+. ..|..|...|...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 56777766664322 2 235666777777654332 5677777777644
No 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.09 E-value=1.5 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=24.0
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccchhhcc--------CCCCCccCCcccCc
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLF--------SPRCSYCNGPILDK 154 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--------~~~C~~C~~~i~~~ 154 (185)
.|..|...+.. .....=|+.||..|..+.+ ...|..|...+...
T Consensus 21 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 21 TCPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp SCTTTCSCCSS-CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCcCCChhhCc-ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 44455444422 2233455667776654322 35688888887643
No 113
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=73.89 E-value=2 Score=25.90 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCCccCCcccCceEEeCCCeecccCc---------ccccCCCccCCCC
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHF---------FCAQCGKQFGEAM 181 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~~ 181 (185)
-.|..|.+.+.+.++..-|+.|+..|. +|..|...+..+.
T Consensus 9 ~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 468888888777777778899998774 5999999886543
No 114
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=73.87 E-value=1.2 Score=28.45 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=29.5
Q ss_pred ccCCCCCCCCCCCCeee-eCCcCCCccchhhccC--CCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFE-RDSRPYCEPDYHNLFS--PRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~~--~~C~~C~~~i~~ 153 (185)
+.|..|...+.. .... .=|+.||..|..+.+. ..|..|+..+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 578888776643 3333 6778888888765442 568888887764
No 115
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=73.74 E-value=1.3 Score=26.67 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=12.7
Q ss_pred Ccccccccccccceeee-cCcccccCC
Q psy3656 83 GCCSSCDKPIVGQVITA-LGKTWHPEH 108 (185)
Q Consensus 83 ~~C~~C~~~i~~~~~~~-~~~~~H~~C 108 (185)
..|..|...+.+.++.. =|..|+..|
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~C 42 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDEC 42 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTH
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHH
Confidence 45666665554433322 244555554
No 116
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.35 E-value=0.7 Score=27.45 Aligned_cols=42 Identities=12% Similarity=0.312 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhccC--CCCCccCCccc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPIL 152 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~--~~C~~C~~~i~ 152 (185)
+.|..|...+.. ....=|..||..|..+.+. ..|..|...|.
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 466667665544 4455666777777654433 56777766665
No 117
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.02 E-value=2 Score=26.20 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCCCccCCcccCceEEeCCCeecccCc--------------ccccCCCccCCCC
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHF--------------FCAQCGKQFGEAM 181 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf--------------~C~~C~~~l~~~~ 181 (185)
..|..|...+....+..-++.||.+|+ .|..|...+..+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 468888877766655567888888775 5888998886554
No 118
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.81 E-value=1.8 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.503 Sum_probs=16.1
Q ss_pred CCcCCCccchhhccC-----CCCCccCCcccC
Q psy3656 127 DSRPYCEPDYHNLFS-----PRCSYCNGPILD 153 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~-----~~C~~C~~~i~~ 153 (185)
=|+.||..|..+.+. ..|..|...+..
T Consensus 39 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 39 CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 345566666554332 368888887764
No 119
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.80 E-value=1.7 Score=26.62 Aligned_cols=37 Identities=14% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCCCccCCcccCceE-EeCCCeecccCcc----------cccCCCccC
Q psy3656 142 PRCSYCNGPILDKCV-TALEKTWHTEHFF----------CAQCGKQFG 178 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~-~~~~~~~H~~Cf~----------C~~C~~~l~ 178 (185)
..|+.|...|+.... ..-+..||..|+. |..|...+.
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 567777777763221 2456788888883 888887764
No 120
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=71.20 E-value=1.6 Score=28.49 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCeeeeCCcCCCccchhh---ccCCCCCccCCcccC
Q psy3656 111 CTHCNQELGTRNFFERDSRPYCEPDYHN---LFSPRCSYCNGPILD 153 (185)
Q Consensus 111 C~~C~~~L~~~~~~~~~g~~yC~~~~~~---~~~~~C~~C~~~i~~ 153 (185)
|..|+.++.--.-.+.=+..+|-+|+.. +-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5667666633222356667888888854 233689999999873
No 121
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=69.97 E-value=1.9 Score=29.47 Aligned_cols=43 Identities=14% Similarity=0.345 Sum_probs=24.3
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccchhhcc--CCCCCccCCcccC
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPILD 153 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--~~~C~~C~~~i~~ 153 (185)
.|..|...+. ..+...=|+.||..|..+.+ ...|..|...|..
T Consensus 55 ~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4555544442 22334556667777755433 2568888888754
No 122
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=69.78 E-value=2 Score=25.92 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=8.5
Q ss_pred CCCCccCCcccC
Q psy3656 142 PRCSYCNGPILD 153 (185)
Q Consensus 142 ~~C~~C~~~i~~ 153 (185)
..|..|...+..
T Consensus 54 ~~CP~Cr~~~~~ 65 (79)
T 2egp_A 54 SSCPVCGISYSF 65 (79)
T ss_dssp CCCSSSCCCCCS
T ss_pred CcCCCCCCcCCH
Confidence 468888887753
No 123
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=69.69 E-value=1.9 Score=28.67 Aligned_cols=68 Identities=13% Similarity=0.300 Sum_probs=45.5
Q ss_pred CccCCCCCCCCCCC------CeeeeCCcCCCccchhhcc--CCCCCccCCcccCceEEeCCCeecccCcccccCCCcc
Q psy3656 108 HFICTHCNQELGTR------NFFERDSRPYCEPDYHNLF--SPRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQF 177 (185)
Q Consensus 108 Cf~C~~C~~~L~~~------~~~~~~g~~yC~~~~~~~~--~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l 177 (185)
=+.|..|...+... .....=|..||..|..+.+ ...|..|.+.+....+... ..-.+=+.|..|...+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l--~i~~~~~~C~iC~~~~ 82 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI--YIGSGTVSCPICMDGY 82 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC--BCSSSSCBCTTTCCBH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc--ccCCCCCCCCCCCCcc
Confidence 36888887776321 1456778999999986654 3689999999986544321 1224556688887765
No 124
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=69.60 E-value=2.2 Score=28.45 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=32.0
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhcc--C-CCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--S-PRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--~-~~C~~C~~~i~~ 153 (185)
+.|..|...+. ......=|+.||..|..+.+ . ..|..|...+..
T Consensus 53 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 68888887774 34556778889998876544 2 379999888864
No 125
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.56 E-value=2 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCCccCCcccCceEEeCCCeecccCc-----------ccccCCCccCCCC
Q psy3656 143 RCSYCNGPILDKCVTALEKTWHTEHF-----------FCAQCGKQFGEAM 181 (185)
Q Consensus 143 ~C~~C~~~i~~~~~~~~~~~~H~~Cf-----------~C~~C~~~l~~~~ 181 (185)
.|..|...+....+..-|+.||..|+ +|..|...+..+.
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 46666665554444455667777663 6999998886543
No 126
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.24 E-value=2.1 Score=26.39 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=16.9
Q ss_pred eCCCeecccCcc--------cccCCCccCCC
Q psy3656 158 ALEKTWHTEHFF--------CAQCGKQFGEA 180 (185)
Q Consensus 158 ~~~~~~H~~Cf~--------C~~C~~~l~~~ 180 (185)
.-++.||.+|.. |..|.+.+..+
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp TTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 367889988864 88888776543
No 127
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=69.16 E-value=1.5 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=22.1
Q ss_pred hhhccCCCCCccCCccc-Cc-----eEEeC------CCeecccCcc
Q psy3656 136 YHNLFSPRCSYCNGPIL-DK-----CVTAL------EKTWHTEHFF 169 (185)
Q Consensus 136 ~~~~~~~~C~~C~~~i~-~~-----~~~~~------~~~~H~~Cf~ 169 (185)
|.......|..|++.|. +. .+... ..=||..||.
T Consensus 20 yAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred EeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 55555678999999997 32 12111 2368999987
No 128
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.86 E-value=2.7 Score=25.85 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=30.5
Q ss_pred ccCCCCCCCCCCC---CeeeeCCcCCCccchhhccC-----CCCCccCCcccCc
Q psy3656 109 FICTHCNQELGTR---NFFERDSRPYCEPDYHNLFS-----PRCSYCNGPILDK 154 (185)
Q Consensus 109 f~C~~C~~~L~~~---~~~~~~g~~yC~~~~~~~~~-----~~C~~C~~~i~~~ 154 (185)
+.|..|...+... .....=|..||..|..+.+. ..|..|.+.+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 5788887777542 23356678888888765432 4688888877643
No 129
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=68.79 E-value=1.8 Score=29.57 Aligned_cols=38 Identities=13% Similarity=0.405 Sum_probs=30.5
Q ss_pred CCCccCCcccCceEEeCCCeecccCcc--------cccCCCccCCC
Q psy3656 143 RCSYCNGPILDKCVTALEKTWHTEHFF--------CAQCGKQFGEA 180 (185)
Q Consensus 143 ~C~~C~~~i~~~~~~~~~~~~H~~Cf~--------C~~C~~~l~~~ 180 (185)
.|..|...+...++..-|+.||..|.. |..|...+...
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 588888887776666789999999954 99999888653
No 130
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=68.30 E-value=2.4 Score=24.73 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=15.7
Q ss_pred eeCCcCCCccchhhcc--CCCCCccCCccc
Q psy3656 125 ERDSRPYCEPDYHNLF--SPRCSYCNGPIL 152 (185)
Q Consensus 125 ~~~g~~yC~~~~~~~~--~~~C~~C~~~i~ 152 (185)
..=|..||..|..+.+ ...|..|...+.
T Consensus 22 ~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 22 LPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp TTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred cCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3345556666654322 256777777665
No 131
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=68.12 E-value=1.9 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.461 Sum_probs=29.6
Q ss_pred ccCCCCCCCCCCCCee-eeCCcCCCccchhhccC---CCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFF-ERDSRPYCEPDYHNLFS---PRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~-~~~g~~yC~~~~~~~~~---~~C~~C~~~i~~ 153 (185)
+.|..|...+.. ... ..=|..||..|..+.+. ..|..|...+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 578888777643 344 56678888888754332 478888888764
No 132
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.70 E-value=1.5 Score=27.96 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=21.1
Q ss_pred Ccccccccccccceee-ecCcccccCCc--------cCCCCCCCCC
Q psy3656 83 GCCSSCDKPIVGQVIT-ALGKTWHPEHF--------ICTHCNQELG 119 (185)
Q Consensus 83 ~~C~~C~~~i~~~~~~-~~~~~~H~~Cf--------~C~~C~~~L~ 119 (185)
..|..|...+.+..+. .-|..||..|+ .|..|+..+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 3588887766543333 34555555554 5666666554
No 133
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=67.56 E-value=4.4 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=15.8
Q ss_pred eCCcC-CCccchhhccCCCCCccCCcccC
Q psy3656 126 RDSRP-YCEPDYHNLFSPRCSYCNGPILD 153 (185)
Q Consensus 126 ~~g~~-yC~~~~~~~~~~~C~~C~~~i~~ 153 (185)
.=|+. +|..|..+. ..|..|...|..
T Consensus 41 pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 33444 666665443 678888877763
No 134
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.39 E-value=2.8 Score=26.09 Aligned_cols=48 Identities=17% Similarity=0.424 Sum_probs=34.5
Q ss_pred CCccccccccccc-ceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCcc
Q psy3656 82 KGCCSSCDKPIVG-QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEP 134 (185)
Q Consensus 82 ~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~ 134 (185)
.-.|..|.+.+.+ .+|+.-...-|+.||-|..= .+.. ....+.+||..
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~--sIk~---q~~~~EvyCPS 63 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE--SIKA---QGATGEVYCPS 63 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH--HHHH---HHSSSCCCCTT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHH--HHHh---cCCCCcEECCC
Confidence 4579999999975 68899999999999999732 1211 13456788853
No 135
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=66.85 E-value=3.5 Score=26.70 Aligned_cols=44 Identities=11% Similarity=0.330 Sum_probs=27.8
Q ss_pred ccCCCCCCCCCCCCeee-eCCcCCCccchhhccC--CCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFE-RDSRPYCEPDYHNLFS--PRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~~--~~C~~C~~~i~~ 153 (185)
+.|..|...+. ..+.. .=|..||..|..+.+. ..|..|...+..
T Consensus 16 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 56777766663 33444 6777788777655442 567777777653
No 136
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.69 E-value=7.6 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=23.9
Q ss_pred CcCCCccchhhc----cCCCCCccCCccc-CceEE--eCCCeecccCccc
Q psy3656 128 SRPYCEPDYHNL----FSPRCSYCNGPIL-DKCVT--ALEKTWHTEHFFC 170 (185)
Q Consensus 128 g~~yC~~~~~~~----~~~~C~~C~~~i~-~~~~~--~~~~~~H~~Cf~C 170 (185)
+.+||..|-... ..-.|.+|++.-. +.+|. .-++.||..|..-
T Consensus 9 ~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 9 NDTECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNP 58 (77)
T ss_dssp CCCCCTTTCSCSSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSS
T ss_pred CCccChhhcCCCCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCC
Confidence 455565553221 1124778887544 34443 3357899988763
No 137
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.62 E-value=2.1 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=32.9
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhccC---CCCCccCCcccCc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPILDK 154 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~---~~C~~C~~~i~~~ 154 (185)
+.|..|...+.. .+...-|..||..|..+.+. ..|..|...|...
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 688888877743 35567888999988765432 4899999988754
No 138
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=66.59 E-value=2.7 Score=29.30 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=32.2
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhccC---CCCCccCCcccCc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPILDK 154 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~---~~C~~C~~~i~~~ 154 (185)
+.|..|...+. ......-|..||..|..+.+. ..|..|...+...
T Consensus 79 ~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhc-CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 67888877663 344567788899988765542 3799998887743
No 139
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.51 E-value=2.3 Score=25.36 Aligned_cols=43 Identities=19% Similarity=0.478 Sum_probs=20.9
Q ss_pred cCCCCCCCCCCCCee--eeCCcCCCccchhhcc--CCCCCccCCccc
Q psy3656 110 ICTHCNQELGTRNFF--ERDSRPYCEPDYHNLF--SPRCSYCNGPIL 152 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~--~~~g~~yC~~~~~~~~--~~~C~~C~~~i~ 152 (185)
.|..|...+...... ..=+..||..|..+.+ ...|..|...|.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 456665555432211 2445555655544322 245666666654
No 140
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.23 E-value=2.9 Score=25.07 Aligned_cols=9 Identities=11% Similarity=0.431 Sum_probs=4.0
Q ss_pred CCeecccCc
Q psy3656 160 EKTWHTEHF 168 (185)
Q Consensus 160 ~~~~H~~Cf 168 (185)
++.||.+|+
T Consensus 45 ~H~fh~~Ci 53 (75)
T 1x4j_A 45 NHEFHAKCV 53 (75)
T ss_dssp TEEEETTHH
T ss_pred CCHhHHHHH
Confidence 444444443
No 141
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.00 E-value=3.6 Score=24.76 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=15.2
Q ss_pred CcC-CCccchhhccCCCCCccCCcccC
Q psy3656 128 SRP-YCEPDYHNLFSPRCSYCNGPILD 153 (185)
Q Consensus 128 g~~-yC~~~~~~~~~~~C~~C~~~i~~ 153 (185)
|.. +|..|..+. ..|..|.+.|..
T Consensus 44 gH~~~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 44 GHLVTCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp CCCCBCHHHHHHC--SBCTTTCCBCCC
T ss_pred CCHHHHHHHhhCC--CCCccCCceecC
Confidence 344 566665432 678888888764
No 142
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.23 E-value=5.9 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCCCccCCcccCceEE-eCCCeecccCc------ccccCCCccCCC
Q psy3656 142 PRCSYCNGPILDKCVT-ALEKTWHTEHF------FCAQCGKQFGEA 180 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~-~~~~~~H~~Cf------~C~~C~~~l~~~ 180 (185)
..|..|...+...++. .-|+.|+..|. .|..|...+...
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccc
Confidence 4577776666555444 56777777774 699999888543
No 143
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=62.12 E-value=1.8 Score=28.82 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=12.3
Q ss_pred hhhccCCCCCccCCccc
Q psy3656 136 YHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 136 ~~~~~~~~C~~C~~~i~ 152 (185)
|.......|..|++.|.
T Consensus 14 yAkS~Ra~Ck~C~~kI~ 30 (111)
T 3odc_A 14 YAKSNRSTCKGCMEKIE 30 (111)
T ss_dssp ECSSSCCBCTTTCCBCC
T ss_pred EeecCCccccccCCCcc
Confidence 34444578999999987
No 144
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=61.89 E-value=1.7 Score=29.13 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=21.9
Q ss_pred hhhccCCCCCccCCcccCceEEe---------CC---CeecccCcc
Q psy3656 136 YHNLFSPRCSYCNGPILDKCVTA---------LE---KTWHTEHFF 169 (185)
Q Consensus 136 ~~~~~~~~C~~C~~~i~~~~~~~---------~~---~~~H~~Cf~ 169 (185)
|.+.....|..|++.|.-..|+. .+ .=||..||.
T Consensus 33 yAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~ 78 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 78 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHH
T ss_pred EeccCCccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccCh
Confidence 55555678999999997322211 12 248999987
No 145
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=61.77 E-value=4.2 Score=30.73 Aligned_cols=39 Identities=13% Similarity=0.354 Sum_probs=26.4
Q ss_pred CCCCccCCcccCceEEe-CCCeecccCc----------ccccCCCccCCC
Q psy3656 142 PRCSYCNGPILDKCVTA-LEKTWHTEHF----------FCAQCGKQFGEA 180 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~-~~~~~H~~Cf----------~C~~C~~~l~~~ 180 (185)
..|..|...|.....-. -+..||..|+ +|..|+.....+
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 56888888777322111 4678888888 688888877554
No 146
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=61.76 E-value=4 Score=26.32 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=32.0
Q ss_pred cCCccCCCCCCCCCCCCeeeeCCcCCCccchhhcc--CCCCCccCCcccC
Q psy3656 106 PEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPILD 153 (185)
Q Consensus 106 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--~~~C~~C~~~i~~ 153 (185)
+.-|.|..|...+ ...+....|..||+.|-.+.+ ...|..|++++..
T Consensus 27 p~~~~CpI~~~~m-~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM-TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC-SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcc-cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4557888887655 445666688888887754433 3678888888764
No 147
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=61.11 E-value=17 Score=23.79 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCCcccccccccccceeeec----CcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCccc
Q psy3656 81 QKGCCSSCDKPIVGQVITAL----GKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 81 ~~~~C~~C~~~i~~~~~~~~----~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~i~ 152 (185)
....|..|+. .++.|.-. .+.||..|.. |. ....|.-||..| .|..|++...
T Consensus 14 ~~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~-------L~----~~P~g~W~Cp~c-------~C~~C~k~~~ 69 (107)
T 4gne_A 14 HEDYCFQCGD--GGELVMCDKKDCPKAYHLLCLN-------LT----QPPYGKWECPWH-------QCDECSSAAV 69 (107)
T ss_dssp SCSSCTTTCC--CSEEEECCSTTCCCEECTGGGT-------CS----SCCSSCCCCGGG-------BCTTTCSBCC
T ss_pred CCCCCCcCCC--CCcEeEECCCCCCcccccccCc-------CC----cCCCCCEECCCC-------CCCcCCCCCC
Confidence 3567999984 24444443 3688988864 21 134567788877 3777887654
No 148
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=60.32 E-value=2.5 Score=27.42 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=11.0
Q ss_pred cccccccccccceee-ecCcccccCC
Q psy3656 84 CCSSCDKPIVGQVIT-ALGKTWHPEH 108 (185)
Q Consensus 84 ~C~~C~~~i~~~~~~-~~~~~~H~~C 108 (185)
.|..|...+.+.+.. .-|..|+..|
T Consensus 17 ~C~IC~~~~~~p~~~~~CgH~fC~~C 42 (108)
T 2ckl_A 17 MCVLCGGYFIDATTIIECLHSFCKTC 42 (108)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHH
T ss_pred CCccCChHHhCcCEeCCCCChhhHHH
Confidence 466665554333222 3344444444
No 149
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.02 E-value=3.8 Score=26.82 Aligned_cols=36 Identities=17% Similarity=0.498 Sum_probs=26.9
Q ss_pred CCCccCCcccCceEEeCCCeecccCc---------ccccCCCccC
Q psy3656 143 RCSYCNGPILDKCVTALEKTWHTEHF---------FCAQCGKQFG 178 (185)
Q Consensus 143 ~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~ 178 (185)
.|..|...+...++..-|+.||..|+ .|..|...+.
T Consensus 17 ~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp BCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 58888877766555567888888775 6888888764
No 150
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=59.40 E-value=4.4 Score=26.02 Aligned_cols=46 Identities=7% Similarity=0.046 Sum_probs=28.5
Q ss_pred CCccCCCCCCCCCCCCeeeeCC-cCCCccchhhcc--CCCCCccCCcccC
Q psy3656 107 EHFICTHCNQELGTRNFFERDS-RPYCEPDYHNLF--SPRCSYCNGPILD 153 (185)
Q Consensus 107 ~Cf~C~~C~~~L~~~~~~~~~g-~~yC~~~~~~~~--~~~C~~C~~~i~~ 153 (185)
.=|.|..|...+ ...+....| ..||+.|..+.+ ...|..|++++..
T Consensus 21 ~~~~CpI~~~~m-~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLM-CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccc-cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 346677776655 334555566 778877754433 3578888887763
No 151
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=59.34 E-value=8.5 Score=21.13 Aligned_cols=10 Identities=20% Similarity=0.756 Sum_probs=5.2
Q ss_pred CCCCccCCcc
Q psy3656 142 PRCSYCNGPI 151 (185)
Q Consensus 142 ~~C~~C~~~i 151 (185)
..|..|...|
T Consensus 44 ~~CP~Cr~~~ 53 (55)
T 1iym_A 44 STCPLCRLTV 53 (55)
T ss_dssp CSCSSSCCCS
T ss_pred CcCcCCCCEe
Confidence 3455555544
No 152
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.30 E-value=3.2 Score=24.04 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=19.9
Q ss_pred eeCCcCCCccchhhcc---CCCCCccCCcccCc
Q psy3656 125 ERDSRPYCEPDYHNLF---SPRCSYCNGPILDK 154 (185)
Q Consensus 125 ~~~g~~yC~~~~~~~~---~~~C~~C~~~i~~~ 154 (185)
..=|..||..|..+.+ ...|..|++.+...
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4566777777765542 25688888887643
No 153
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=58.98 E-value=4.4 Score=28.40 Aligned_cols=43 Identities=14% Similarity=0.434 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCCCCeee-eCCcCCCccchhhcc---CCCCCccCCccc
Q psy3656 109 FICTHCNQELGTRNFFE-RDSRPYCEPDYHNLF---SPRCSYCNGPIL 152 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~---~~~C~~C~~~i~ 152 (185)
+.|..|...+.. .... .-|+.||..|..+.+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 588888777743 3444 778899999876544 356999988875
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.31 E-value=5.9 Score=25.57 Aligned_cols=37 Identities=22% Similarity=0.544 Sum_probs=19.3
Q ss_pred CCCCccCCcccCceEEeCCCeecccCcccccCCCccCCCCeee
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMVKF 184 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 184 (185)
..|..|++++. .|.|-|.+ =|.|..|+..++-.+..|
T Consensus 62 a~CPdC~q~Le--vLkACGAv----dYFC~~chgLiSKkRV~F 98 (101)
T 2jne_A 62 ALCPDCHQPLQ--VLKACGAV----DYFCQHGHGLISKKRVEF 98 (101)
T ss_dssp EECTTTCSBCE--EEEETTEE----EEEETTTTEEECTTTSEE
T ss_pred ccCcchhhHHH--HHHHhcCc----chhhccCCceeecceEEE
Confidence 44666666653 34444311 145666666665555444
No 155
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=57.93 E-value=3.2 Score=27.04 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=7.6
Q ss_pred ccCCCCCCCCC
Q psy3656 109 FICTHCNQELG 119 (185)
Q Consensus 109 f~C~~C~~~L~ 119 (185)
..|.+|-..|.
T Consensus 26 ~~C~ICl~~~~ 36 (114)
T 1v87_A 26 EDCIICMEKLA 36 (114)
T ss_dssp CEETTTTEETT
T ss_pred CcCccCChhhc
Confidence 36888877664
No 156
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=57.85 E-value=2.6 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.456 Sum_probs=22.5
Q ss_pred CcccccccccccceeeecCcccccCCc---------cCCCCCCCCC
Q psy3656 83 GCCSSCDKPIVGQVITALGKTWHPEHF---------ICTHCNQELG 119 (185)
Q Consensus 83 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~L~ 119 (185)
..|..|...+.+.++..=|..|+..|+ .|..|+..+.
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 358888877654444444555555554 6677766664
No 157
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=56.93 E-value=4.2 Score=22.10 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.7
Q ss_pred eeeeCCcCCCccchhhcc
Q psy3656 123 FFERDSRPYCEPDYHNLF 140 (185)
Q Consensus 123 ~~~~~g~~yC~~~~~~~~ 140 (185)
|...+-++||.+||.++-
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 447889999999998754
No 158
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=55.45 E-value=3 Score=29.27 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=23.7
Q ss_pred Ccccccccccccceee-ecCcccccCCc---------cCCCCCCCCC
Q psy3656 83 GCCSSCDKPIVGQVIT-ALGKTWHPEHF---------ICTHCNQELG 119 (185)
Q Consensus 83 ~~C~~C~~~i~~~~~~-~~~~~~H~~Cf---------~C~~C~~~L~ 119 (185)
..|..|...+...... .-|..||..|+ .|..|+..+.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3699998877554333 44666666664 4777777764
No 159
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.06 E-value=5.1 Score=23.35 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=10.7
Q ss_pred CCcCCCccchhhcc--CCCCCccCCccc
Q psy3656 127 DSRPYCEPDYHNLF--SPRCSYCNGPIL 152 (185)
Q Consensus 127 ~g~~yC~~~~~~~~--~~~C~~C~~~i~ 152 (185)
=|..||..|..+.+ ...|..|...|.
T Consensus 35 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 35 CMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34444444433211 234555544443
No 160
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=54.54 E-value=5.1 Score=24.85 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=29.8
Q ss_pred CCccCCCCCCCCCCCCeeeeCCcCCCccchhhcc--CCCCCccCCcccC
Q psy3656 107 EHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPILD 153 (185)
Q Consensus 107 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~--~~~C~~C~~~i~~ 153 (185)
.=|.|..|...+ ...+....|..||+.|-.+.+ ...|..|++++..
T Consensus 13 ~~~~CpI~~~~m-~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLM-TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchh-cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 446777776655 344555678888877654332 3678888887754
No 161
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.33 E-value=8.4 Score=21.34 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=6.9
Q ss_pred eCCcCCCccchhhc
Q psy3656 126 RDSRPYCEPDYHNL 139 (185)
Q Consensus 126 ~~g~~yC~~~~~~~ 139 (185)
.=|..||..|..+.
T Consensus 32 ~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 32 ECGHNFCKACITRW 45 (58)
T ss_dssp SSCCCCCHHHHHHH
T ss_pred CCCCccCHHHHHHH
Confidence 34455555554433
No 162
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=53.61 E-value=3.1 Score=25.96 Aligned_cols=42 Identities=14% Similarity=0.434 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCCCCeeee-CCcCCCccchhhcc---C-CCCCccCCcc
Q psy3656 109 FICTHCNQELGTRNFFER-DSRPYCEPDYHNLF---S-PRCSYCNGPI 151 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~-~g~~yC~~~~~~~~---~-~~C~~C~~~i 151 (185)
|.|..|...+. ..+... =|+.||..|..+.+ + ..|..|...+
T Consensus 14 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45666655443 233444 47778888865543 2 5789998886
No 163
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.47 E-value=4.7 Score=26.37 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=33.3
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhcc---CCCCCccCCcccCce
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILDKC 155 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~---~~~C~~C~~~i~~~~ 155 (185)
+.|..|...+. ......-|..||..|..+.+ +..|..|...|....
T Consensus 24 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 24 ISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp TBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 67888877764 34456788899998876543 467999999887543
No 164
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=52.86 E-value=5 Score=28.22 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=18.9
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccchhhcc---CCCCCccCCccc
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPIL 152 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~---~~~C~~C~~~i~ 152 (185)
.|..|...+.. .+...-|..||..|..+.+ ...|..|...|.
T Consensus 20 ~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 20 ECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp BCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 44444444422 2333445555555544332 125555555543
No 165
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=52.65 E-value=3.7 Score=28.57 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred CcccccccccccceeeecCcccccCCc---------cCCCCCCCCC
Q psy3656 83 GCCSSCDKPIVGQVITALGKTWHPEHF---------ICTHCNQELG 119 (185)
Q Consensus 83 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~L~ 119 (185)
..|..|...+.+.++..-|-.|+..|+ .|..|...+.
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 357777766644444333444555552 5666666554
No 166
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=51.78 E-value=4.3 Score=27.06 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=21.1
Q ss_pred hhhccCCCCCccCCcccCceEE---------eC---CCeecccCcc
Q psy3656 136 YHNLFSPRCSYCNGPILDKCVT---------AL---EKTWHTEHFF 169 (185)
Q Consensus 136 ~~~~~~~~C~~C~~~i~~~~~~---------~~---~~~~H~~Cf~ 169 (185)
|.+.....|..|++.|.-..|+ .. ..=||..||.
T Consensus 15 YAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred EeCCCCCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 4455557899999998732111 11 2367888886
No 167
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.76 E-value=20 Score=21.05 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=20.7
Q ss_pred eeeeCCcC-CCccchhhccCCCCCccCCcccCc
Q psy3656 123 FFERDSRP-YCEPDYHNLFSPRCSYCNGPILDK 154 (185)
Q Consensus 123 ~~~~~g~~-yC~~~~~~~~~~~C~~C~~~i~~~ 154 (185)
.+..=|++ +|..|..+. ..|..|...|...
T Consensus 29 v~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 29 VLLPCRHTCLCDGCVKYF--QQCPMCRQFVQES 59 (68)
T ss_dssp EETTTTBCCSCTTHHHHC--SSCTTTCCCCCCE
T ss_pred EEECCCChhhhHHHHhcC--CCCCCCCcchhce
Confidence 33455566 788887643 6899999988753
No 168
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.62 E-value=2.6 Score=27.07 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=6.6
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 81 ~~C~~C~k~f~ 91 (115)
T 2dmi_A 81 LKCMYCGHSFE 91 (115)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCCccC
Confidence 56666666553
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=49.06 E-value=9 Score=28.82 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=34.6
Q ss_pred ccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhcc---CCCCCccCCcccC
Q psy3656 105 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILD 153 (185)
Q Consensus 105 H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~---~~~C~~C~~~i~~ 153 (185)
-+.-|.|..|...+ ...+....|..||..|..+.+ +..|..|+.++..
T Consensus 205 ~~~~~~c~i~~~~~-~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELM-REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBC-SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHh-cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34567888887766 445666789999998865433 3459999998864
No 170
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.61 E-value=6 Score=24.75 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=24.9
Q ss_pred ccCCCCCCCCCCCC-e-eeeCCcCCCccchhhcc--CCCCCccCCccc
Q psy3656 109 FICTHCNQELGTRN-F-FERDSRPYCEPDYHNLF--SPRCSYCNGPIL 152 (185)
Q Consensus 109 f~C~~C~~~L~~~~-~-~~~~g~~yC~~~~~~~~--~~~C~~C~~~i~ 152 (185)
..|..|...+..+. . ...=|..||..|..+.+ ...|..|...|.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 46777766654332 2 24456667766654422 246777766654
No 171
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.50 E-value=6.1 Score=29.82 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.1
Q ss_pred CCCCccCCcccCc
Q psy3656 142 PRCSYCNGPILDK 154 (185)
Q Consensus 142 ~~C~~C~~~i~~~ 154 (185)
..|..|+.....+
T Consensus 218 ~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 218 PRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCCBCCSC
T ss_pred CCCCCCCCCCCCC
Confidence 5788888876543
No 172
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=44.30 E-value=21 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=16.9
Q ss_pred eeCCcC-CCccchhhccCCCCCccCCcccCc
Q psy3656 125 ERDSRP-YCEPDYHNLFSPRCSYCNGPILDK 154 (185)
Q Consensus 125 ~~~g~~-yC~~~~~~~~~~~C~~C~~~i~~~ 154 (185)
..=|+. +|..|..+. ..|..|...|...
T Consensus 34 ~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 34 CPCGHTVCCESCAAQL--QSCPVCRSRVEHV 62 (79)
T ss_dssp ETTCBCCBCHHHHTTC--SBCTTTCCBCCEE
T ss_pred ECCCCHHHHHHHHHhc--CcCCCCCchhhCe
Confidence 334444 566665443 3788888887753
No 173
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=43.88 E-value=2.3 Score=29.36 Aligned_cols=42 Identities=21% Similarity=0.543 Sum_probs=26.0
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhccC---CCCCccCCcc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPI 151 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~---~~C~~C~~~i 151 (185)
|.|..|...+.. .+...-|..||..|..+.+. ..|..|...|
T Consensus 32 ~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456666555532 24456677778777665432 4788888765
No 174
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=43.67 E-value=4.4 Score=25.47 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=3.4
Q ss_pred CCCccCC
Q psy3656 143 RCSYCNG 149 (185)
Q Consensus 143 ~C~~C~~ 149 (185)
.|.+|++
T Consensus 31 pCRvC~R 37 (89)
T 1wil_A 31 PCRVCTR 37 (89)
T ss_dssp SCSSSSS
T ss_pred ccccccc
Confidence 3555544
No 175
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.65 E-value=23 Score=21.67 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCCCccCCccc-CceEE-eC-----CCeecccCc----------ccccCCCccCCC
Q psy3656 142 PRCSYCNGPIL-DKCVT-AL-----EKTWHTEHF----------FCAQCGKQFGEA 180 (185)
Q Consensus 142 ~~C~~C~~~i~-~~~~~-~~-----~~~~H~~Cf----------~C~~C~~~l~~~ 180 (185)
..|..|..... +..+. .- .+.||.+|. +|..|...+..+
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45666665443 22222 11 278888775 588887777443
No 176
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.96 E-value=13 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=9.3
Q ss_pred CCCCccCC-cccCceEEe
Q psy3656 142 PRCSYCNG-PILDKCVTA 158 (185)
Q Consensus 142 ~~C~~C~~-~i~~~~~~~ 158 (185)
..|..|++ +|.|.....
T Consensus 12 ~~Cd~C~~~pi~G~RykC 29 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRC 29 (63)
T ss_dssp SCCSSSCCCSSCSCEEEE
T ss_pred CCCcCCCCcceecceEEe
Confidence 35666664 365544444
No 177
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.59 E-value=7.2 Score=22.23 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=16.0
Q ss_pred CCCCccCCcccCceEEeCCCeecccCc
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHF 168 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf 168 (185)
..|..|...+....+..-++.||.+|+
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci 47 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCI 47 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHH
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHH
Confidence 356666666655444455666666654
No 178
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=42.44 E-value=3.9 Score=30.11 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhh
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHN 138 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~ 138 (185)
..|..|+-..........+|+.+|..|+..
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 367777766655555567788888888754
No 179
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=42.20 E-value=14 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=22.0
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCC-ccchhh
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYC-EPDYHN 138 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC-~~~~~~ 138 (185)
.|..|...+...+-...+|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 57778887776677889999998 566544
No 180
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=40.28 E-value=5.9 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=19.6
Q ss_pred CCCcccccccccc-cc-ee----ee---cC---cccccCCccCC
Q psy3656 81 QKGCCSSCDKPIV-GQ-VI----TA---LG---KTWHPEHFICT 112 (185)
Q Consensus 81 ~~~~C~~C~~~i~-~~-~~----~~---~~---~~~H~~Cf~C~ 112 (185)
+-..|..|++.|. ++ ++ .. .| .-||..||.=.
T Consensus 38 ~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~~ 81 (223)
T 4av1_A 38 GRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKV 81 (223)
T ss_dssp TTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTTS
T ss_pred CCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhhh
Confidence 3457999999993 33 11 11 12 35688898753
No 181
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=40.06 E-value=10 Score=26.56 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=31.0
Q ss_pred CCCCccCCcccCceEEeCCCeecccCc---------ccccCCCccCCC
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHF---------FCAQCGKQFGEA 180 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 180 (185)
-.|..|...+.+.+...-|..|+..|+ +|..|...|..+
T Consensus 19 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 368889888877666667889999887 799999888654
No 182
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.06 E-value=23 Score=19.87 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=4.7
Q ss_pred CeecccCcc
Q psy3656 161 KTWHTEHFF 169 (185)
Q Consensus 161 ~~~H~~Cf~ 169 (185)
+.||..|..
T Consensus 29 ~~~H~~Cl~ 37 (56)
T 2yql_A 29 RVYHLDCLD 37 (56)
T ss_dssp CEECSSSSS
T ss_pred cceECccCC
Confidence 455555544
No 183
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=39.83 E-value=5.2 Score=26.75 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=11.9
Q ss_pred hhhccCCCCCccCCccc
Q psy3656 136 YHNLFSPRCSYCNGPIL 152 (185)
Q Consensus 136 ~~~~~~~~C~~C~~~i~ 152 (185)
|.......|..|++.|.
T Consensus 10 YAkSgRA~Ck~C~~kI~ 26 (117)
T 1uw0_A 10 YAKRGTAGCKKCKEKIV 26 (117)
T ss_dssp ECCSSCEECTTSSCEEC
T ss_pred EeCCCCccchhhCcccC
Confidence 33444467999999987
No 184
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=39.34 E-value=12 Score=16.19 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=8.0
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56788887764
No 185
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=39.24 E-value=11 Score=24.58 Aligned_cols=20 Identities=10% Similarity=0.396 Sum_probs=12.8
Q ss_pred eCCCeecccCc--------ccccCCCcc
Q psy3656 158 ALEKTWHTEHF--------FCAQCGKQF 177 (185)
Q Consensus 158 ~~~~~~H~~Cf--------~C~~C~~~l 177 (185)
.-++.||.+|. .|..|...+
T Consensus 72 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp TTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred ccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 45677777765 366666654
No 186
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.74 E-value=12 Score=25.38 Aligned_cols=11 Identities=18% Similarity=0.751 Sum_probs=6.5
Q ss_pred CCccccccccc
Q psy3656 82 KGCCSSCDKPI 92 (185)
Q Consensus 82 ~~~C~~C~~~i 92 (185)
...|..|++.+
T Consensus 8 ~~~Ct~Cg~~~ 18 (129)
T 3ql9_A 8 IVSCTACGQQV 18 (129)
T ss_dssp SCBCTTTCCBC
T ss_pred ceEeccCCCCC
Confidence 44566666655
No 187
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.73 E-value=44 Score=20.99 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.5
Q ss_pred CCCccc
Q psy3656 130 PYCEPD 135 (185)
Q Consensus 130 ~yC~~~ 135 (185)
+.|..|
T Consensus 38 L~CD~C 43 (88)
T 1fp0_A 38 VMCNQC 43 (88)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 334444
No 188
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=36.44 E-value=26 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=28.5
Q ss_pred ccCCCCCCCCCCCCeeeeCCcC-CCccchhhccCCCCCccCCcccC
Q psy3656 109 FICTHCNQELGTRNFFERDSRP-YCEPDYHNLFSPRCSYCNGPILD 153 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~-yC~~~~~~~~~~~C~~C~~~i~~ 153 (185)
+.|..|-..+. ......=|.. +|..|..+. ..|..|...|..
T Consensus 296 ~~C~IC~~~~~-~~v~lpCgH~~fC~~C~~~~--~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEV-SVVFIPCGHLVVCQECAPSL--RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBC-CEEEETTCCEEECTTTGGGC--SBCTTTCCBCCE
T ss_pred CCCCccCCcCC-ceEEcCCCChhHhHHHHhcC--CcCCCCCCCccC
Confidence 56777766553 2344567777 888887654 678888887764
No 189
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=36.34 E-value=14 Score=16.21 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=8.5
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888877643
No 190
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.04 E-value=12 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred hhhccCCCCCccCCccc-Cc-----eEEe-----CC---CeecccCcc
Q psy3656 136 YHNLFSPRCSYCNGPIL-DK-----CVTA-----LE---KTWHTEHFF 169 (185)
Q Consensus 136 ~~~~~~~~C~~C~~~i~-~~-----~~~~-----~~---~~~H~~Cf~ 169 (185)
|.......|..|++.|. +. .+.. .+ .=||..||.
T Consensus 22 YAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 22 YAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp ECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred EeCCCCccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 44455578999999997 32 1211 12 257889987
No 191
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.70 E-value=12 Score=16.44 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=7.9
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 67888887764
No 192
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=35.57 E-value=14 Score=26.52 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=32.4
Q ss_pred cCCccCCCCCCCCCCCCeeeeCCcCCCccchhhc---cCCCCCccCCcccC
Q psy3656 106 PEHFICTHCNQELGTRNFFERDSRPYCEPDYHNL---FSPRCSYCNGPILD 153 (185)
Q Consensus 106 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~---~~~~C~~C~~~i~~ 153 (185)
+.-|.|..|...+ ...+....|..||..|-.+. .+..|..|+.++..
T Consensus 104 p~~f~CPI~~elm-~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELM-REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBC-SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccC-CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4557788887766 44566678899998775433 23469999988764
No 193
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=35.44 E-value=15 Score=21.67 Aligned_cols=6 Identities=33% Similarity=1.099 Sum_probs=3.0
Q ss_pred ccccCC
Q psy3656 169 FCAQCG 174 (185)
Q Consensus 169 ~C~~C~ 174 (185)
.|..|.
T Consensus 52 ~C~~C~ 57 (66)
T 2lri_C 52 RCRSCS 57 (66)
T ss_dssp CCTTTT
T ss_pred ECcccc
Confidence 455554
No 194
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=35.36 E-value=25 Score=20.06 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=4.4
Q ss_pred CeecccCcc
Q psy3656 161 KTWHTEHFF 169 (185)
Q Consensus 161 ~~~H~~Cf~ 169 (185)
+.||..|..
T Consensus 25 ~~fH~~Cl~ 33 (60)
T 2puy_A 25 RVYHLDCLD 33 (60)
T ss_dssp CEECGGGSS
T ss_pred cCEECCcCC
Confidence 445555443
No 195
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=35.14 E-value=16 Score=16.23 Aligned_cols=12 Identities=25% Similarity=0.941 Sum_probs=8.7
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 678888877653
No 196
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.87 E-value=24 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=7.9
Q ss_pred CCccccccccc
Q psy3656 82 KGCCSSCDKPI 92 (185)
Q Consensus 82 ~~~C~~C~~~i 92 (185)
...|..|.+.|
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wfh_A 15 PNRCTVCRKRV 25 (64)
T ss_dssp CCCCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 45688888765
No 197
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.58 E-value=29 Score=20.25 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.6
Q ss_pred CCCccc
Q psy3656 130 PYCEPD 135 (185)
Q Consensus 130 ~yC~~~ 135 (185)
+.|..|
T Consensus 21 l~CD~C 26 (66)
T 1xwh_A 21 ICCDGC 26 (66)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 344444
No 198
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.50 E-value=24 Score=20.82 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=8.3
Q ss_pred CCccccccccc
Q psy3656 82 KGCCSSCDKPI 92 (185)
Q Consensus 82 ~~~C~~C~~~i 92 (185)
...|..|.+.|
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wg2_A 15 NNRCFSCNKKV 25 (64)
T ss_dssp SCSCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 45788888876
No 199
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.68 E-value=8.6 Score=26.64 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=8.3
Q ss_pred CCCccccccccc
Q psy3656 81 QKGCCSSCDKPI 92 (185)
Q Consensus 81 ~~~~C~~C~~~i 92 (185)
....|..|+..+
T Consensus 13 ~~i~Ct~Cg~~~ 24 (142)
T 2lbm_A 13 GIVSCTACGQQV 24 (142)
T ss_dssp CCCBCTTTCSBS
T ss_pred CCCEecCCCCcc
Confidence 355777887766
No 200
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.34 E-value=30 Score=19.00 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=21.9
Q ss_pred eeeeCCcCCCccchhhccC--CCCCccCCcccC
Q psy3656 123 FFERDSRPYCEPDYHNLFS--PRCSYCNGPILD 153 (185)
Q Consensus 123 ~~~~~g~~yC~~~~~~~~~--~~C~~C~~~i~~ 153 (185)
|....|.--|..|+.+..+ .+|..|..+-.+
T Consensus 5 fk~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg 37 (47)
T 2ebr_A 5 SSGPEGSWDCELCLVQNKADSTKCLACESAKPG 37 (47)
T ss_dssp CSSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred ccCCCCeeECCeeecCCcCCcceecCcCCCCCC
Confidence 3445566668888877665 689999887554
No 201
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.26 E-value=43 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=15.5
Q ss_pred CCCCccCCccc---CceEE--eCCCeecccCcc
Q psy3656 142 PRCSYCNGPIL---DKCVT--ALEKTWHTEHFF 169 (185)
Q Consensus 142 ~~C~~C~~~i~---~~~~~--~~~~~~H~~Cf~ 169 (185)
..|.+|++.-. +.+|. .-++.||..|..
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC
Confidence 55777766532 23333 234677777764
No 202
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=33.10 E-value=19 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=10.0
Q ss_pred cccccCCCccCCCC
Q psy3656 168 FFCAQCGKQFGEAM 181 (185)
Q Consensus 168 f~C~~C~~~l~~~~ 181 (185)
|+|..|++.++.++
T Consensus 4 Y~C~rCg~~fs~~e 17 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQ 17 (48)
T ss_dssp -CCCCTTTTCCCCC
T ss_pred EEeeccCCCccHHH
Confidence 57888888886654
No 203
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.07 E-value=14 Score=16.25 Aligned_cols=12 Identities=42% Similarity=1.132 Sum_probs=8.5
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 678888877643
No 204
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.91 E-value=9.3 Score=16.63 Aligned_cols=12 Identities=42% Similarity=1.287 Sum_probs=8.1
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 567777777643
No 205
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.42 E-value=15 Score=16.14 Aligned_cols=12 Identities=42% Similarity=1.018 Sum_probs=8.5
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 678888877654
No 206
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.11 E-value=20 Score=15.74 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=8.4
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 677788877644
No 207
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.87 E-value=22 Score=20.90 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=14.8
Q ss_pred CCCCccCCcccC--ceEEeC---CCeecccC
Q psy3656 142 PRCSYCNGPILD--KCVTAL---EKTWHTEH 167 (185)
Q Consensus 142 ~~C~~C~~~i~~--~~~~~~---~~~~H~~C 167 (185)
..|..|++++.+ ..|... ++=||..|
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhc
Confidence 357777777653 234444 45566644
No 208
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.47 E-value=21 Score=15.44 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=7.8
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 567777776643
No 209
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=30.86 E-value=12 Score=28.59 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=18.3
Q ss_pred ccCCCCCccCCcccCceEEeCCCeecccC
Q psy3656 139 LFSPRCSYCNGPILDKCVTALEKTWHTEH 167 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~C 167 (185)
+.+..|..|+.+|.-..+.-+...|.|.|
T Consensus 232 R~g~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 232 RDGEPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp CTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred CCcCCCCCCCCEeEEEEECCCCeEECCCC
Confidence 34567999999997444433344555555
No 210
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=30.49 E-value=12 Score=28.75 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=18.3
Q ss_pred ccCCCCCccCCcccCceEEeCCCeecccC
Q psy3656 139 LFSPRCSYCNGPILDKCVTALEKTWHTEH 167 (185)
Q Consensus 139 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~C 167 (185)
+.+..|..|+.+|.-..+.-+...|.|.|
T Consensus 243 R~g~pC~~CG~~I~~~~~~gR~t~~CP~C 271 (273)
T 3u6p_A 243 RQGNPCKRCGTPIEKTVVAGRGTHYCPRC 271 (273)
T ss_dssp CTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred CCcCCCCCCCCeEEEEEECCCCeEECCCC
Confidence 34578999999987444433444555554
No 211
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.20 E-value=16 Score=15.94 Aligned_cols=11 Identities=55% Similarity=1.247 Sum_probs=7.6
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 56777877654
No 212
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=35.66 E-value=11 Score=16.79 Aligned_cols=12 Identities=33% Similarity=1.198 Sum_probs=8.2
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 677778777643
No 213
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.42 E-value=20 Score=17.09 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=9.1
Q ss_pred CcccccCCCccCC
Q psy3656 167 HFFCAQCGKQFGE 179 (185)
Q Consensus 167 Cf~C~~C~~~l~~ 179 (185)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4778888877643
No 214
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.54 E-value=11 Score=16.76 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=8.2
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 567778777643
No 215
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.34 E-value=13 Score=16.44 Aligned_cols=12 Identities=17% Similarity=0.528 Sum_probs=8.6
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 678888877643
No 216
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=28.96 E-value=12 Score=24.96 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=0.0
Q ss_pred eCCCeecccCc--------ccccCCCccC
Q psy3656 158 ALEKTWHTEHF--------FCAQCGKQFG 178 (185)
Q Consensus 158 ~~~~~~H~~Cf--------~C~~C~~~l~ 178 (185)
.-++.||.+|. .|..|...+.
T Consensus 83 ~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------
T ss_pred CcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34667777775 3666666543
No 217
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=28.91 E-value=13 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=17.8
Q ss_pred cCCCCCccCCcccCceEEeCCCeecccC
Q psy3656 140 FSPRCSYCNGPILDKCVTALEKTWHTEH 167 (185)
Q Consensus 140 ~~~~C~~C~~~i~~~~~~~~~~~~H~~C 167 (185)
-+..|..|+.+|.-..+.-+...|.|.|
T Consensus 239 ~g~pC~~CG~~I~~~~~~gR~t~~CP~C 266 (268)
T 1k82_A 239 KGEPCRVCGTPIVATKHAQRATFYCRQC 266 (268)
T ss_dssp TTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred CCCCCCCCCCEeeEEEECCCceEECCCC
Confidence 3577999999997444433344555554
No 218
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=28.61 E-value=14 Score=28.39 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=16.8
Q ss_pred CCCCCccCCcccCceEEeCCCeecccC
Q psy3656 141 SPRCSYCNGPILDKCVTALEKTWHTEH 167 (185)
Q Consensus 141 ~~~C~~C~~~i~~~~~~~~~~~~H~~C 167 (185)
+..|..|+.+|.-..+.-+...|.|.|
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~C 268 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVC 268 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCC
Confidence 477999999997444433334454444
No 219
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.60 E-value=33 Score=20.87 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.5
Q ss_pred CCccccccccc
Q psy3656 82 KGCCSSCDKPI 92 (185)
Q Consensus 82 ~~~C~~C~~~i 92 (185)
...|..|.+.|
T Consensus 25 ~~RC~~C~kkv 35 (74)
T 1wfp_A 25 ATRCLSCNKKV 35 (74)
T ss_dssp CCBCSSSCCBC
T ss_pred CccchhhcCcc
Confidence 46798998876
No 220
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=28.57 E-value=14 Score=28.27 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=16.7
Q ss_pred cCCCCCccCCcccCceEEeCCCeecccC
Q psy3656 140 FSPRCSYCNGPILDKCVTALEKTWHTEH 167 (185)
Q Consensus 140 ~~~~C~~C~~~i~~~~~~~~~~~~H~~C 167 (185)
-+..|..|+.+|.-..+.-+...|.|.|
T Consensus 234 ~g~pC~~CG~~I~~~~~~gR~t~~CP~C 261 (266)
T 1ee8_A 234 EGLPCPACGRPVERRVVAGRGTHFCPTC 261 (266)
T ss_dssp TTSBCTTTCCBCEEEESSSCEEEECTTT
T ss_pred CCCCCCCCCCEeeEEEECCCceEECCCC
Confidence 3577999999997433333334444443
No 221
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=28.27 E-value=29 Score=21.66 Aligned_cols=8 Identities=25% Similarity=0.766 Sum_probs=3.4
Q ss_pred CCCCccCC
Q psy3656 142 PRCSYCNG 149 (185)
Q Consensus 142 ~~C~~C~~ 149 (185)
.+|..|++
T Consensus 18 l~C~iC~~ 25 (87)
T 2lq6_A 18 LTCYLCKQ 25 (87)
T ss_dssp CCBTTTTB
T ss_pred CCCcCCCC
Confidence 34444443
No 222
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.17 E-value=18 Score=15.86 Aligned_cols=11 Identities=36% Similarity=1.222 Sum_probs=7.7
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 66777877664
No 223
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=27.97 E-value=16 Score=19.67 Aligned_cols=12 Identities=33% Similarity=0.944 Sum_probs=10.2
Q ss_pred CCcccccccccc
Q psy3656 82 KGCCSSCDKPIV 93 (185)
Q Consensus 82 ~~~C~~C~~~i~ 93 (185)
-.+|..|+++|.
T Consensus 17 YRvC~~CgkPi~ 28 (44)
T 2lo3_A 17 YRVCEKCGKPLA 28 (44)
T ss_dssp EEECTTTCCEEE
T ss_pred chhhcccCCcch
Confidence 468999999993
No 224
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.78 E-value=19 Score=22.54 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=28.4
Q ss_pred CccCCCCCCCCCCCCeee-eCCcCCCccchhhcc--------CCCCCc--cCCc-cc
Q psy3656 108 HFICTHCNQELGTRNFFE-RDSRPYCEPDYHNLF--------SPRCSY--CNGP-IL 152 (185)
Q Consensus 108 Cf~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~--------~~~C~~--C~~~-i~ 152 (185)
=|.|..|...+ ...+.. ..|..||+.|-.+.+ ...|.. |... +.
T Consensus 7 ~~~CPI~~~~~-~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 7 GFTCPITKEEM-KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CCBCTTTCSBC-SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred EeECcCcCchh-cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 36788887766 345666 488899987754333 247888 7654 44
No 225
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.63 E-value=14 Score=22.04 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=10.0
Q ss_pred CCcCCCccchhhcc
Q psy3656 127 DSRPYCEPDYHNLF 140 (185)
Q Consensus 127 ~g~~yC~~~~~~~~ 140 (185)
++.+||..||....
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 45789999887643
No 226
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=27.18 E-value=22 Score=20.41 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=31.3
Q ss_pred ccCCCCCCCCCCCCeee-eCCcCCCccchhhccC--CCCCccCCcccCceE
Q psy3656 109 FICTHCNQELGTRNFFE-RDSRPYCEPDYHNLFS--PRCSYCNGPILDKCV 156 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~~--~~C~~C~~~i~~~~~ 156 (185)
|.|..+...+. ..+.. ..|..|++.+-.+.+. .+|...++++....|
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 66777777664 34555 7899998877554332 568888888764433
No 227
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=26.97 E-value=4.2 Score=25.21 Aligned_cols=56 Identities=13% Similarity=0.359 Sum_probs=31.0
Q ss_pred CCcccccccccccceee-ecCcccccCCccCCCCCCCCCCCCee-----eeCCcCCCccchh
Q psy3656 82 KGCCSSCDKPIVGQVIT-ALGKTWHPEHFICTHCNQELGTRNFF-----ERDSRPYCEPDYH 137 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~-~~~~~~H~~Cf~C~~C~~~L~~~~~~-----~~~g~~yC~~~~~ 137 (185)
...|..|+..|.-..+. -..+.....-|.|.+|+..+....|. +-+.+.|...-|.
T Consensus 10 ~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~HtsCISEaeKY~g~~y~ 71 (79)
T 1wjv_A 10 FFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHVKCISEGQKYGGKGYE 71 (79)
T ss_dssp EEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCCCCCSCTTSSCCCSCS
T ss_pred EEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCEeeeCChhheeeecccc
Confidence 45699999888432221 12222222348999999988644433 3444444444443
No 228
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.89 E-value=18 Score=16.83 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=8.7
Q ss_pred CcccccCCCccC
Q psy3656 167 HFFCAQCGKQFG 178 (185)
Q Consensus 167 Cf~C~~C~~~l~ 178 (185)
-|.|..|++.+.
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 377888887764
No 229
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=26.75 E-value=22 Score=28.84 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=28.5
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccchhhc---cCCCCCccCCcccCc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNL---FSPRCSYCNGPILDK 154 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~---~~~~C~~C~~~i~~~ 154 (185)
..|..|-..+. ......-|+.+|..|.... ....|..|...|...
T Consensus 333 ~~C~ICle~~~-~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC-CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC-CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 46777755552 2344667777888876533 236788888877643
No 230
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.71 E-value=24 Score=16.56 Aligned_cols=13 Identities=38% Similarity=1.042 Sum_probs=8.9
Q ss_pred CcccccCCCccCC
Q psy3656 167 HFFCAQCGKQFGE 179 (185)
Q Consensus 167 Cf~C~~C~~~l~~ 179 (185)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 3678888877643
No 231
>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=26.67 E-value=7.1 Score=23.88 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=4.1
Q ss_pred CCCccCCcc
Q psy3656 143 RCSYCNGPI 151 (185)
Q Consensus 143 ~C~~C~~~i 151 (185)
.|..|+..+
T Consensus 26 ~C~~CH~~~ 34 (75)
T 3h33_A 26 ECRGCHEKG 34 (75)
T ss_dssp CSTTTCTTS
T ss_pred ChhhhcCCC
Confidence 344444443
No 232
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.20 E-value=29 Score=26.63 Aligned_cols=48 Identities=8% Similarity=0.245 Sum_probs=33.3
Q ss_pred CccCCCCCCCCCCCCeee-eCCcCCCccchhhccC----CCCCc--cCCcccCceE
Q psy3656 108 HFICTHCNQELGTRNFFE-RDSRPYCEPDYHNLFS----PRCSY--CNGPILDKCV 156 (185)
Q Consensus 108 Cf~C~~C~~~L~~~~~~~-~~g~~yC~~~~~~~~~----~~C~~--C~~~i~~~~~ 156 (185)
=|+|..|...+ ...+.. .-|+.||+.|..+.+. ..|.. |.+.+....+
T Consensus 181 el~CPIcl~~f-~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 181 ELTCPITCKPY-EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSBCTTTSSBC-SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeECcCccCcc-cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 37888888877 444553 6789999988766553 25888 8887764333
No 233
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.94 E-value=20 Score=16.82 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=8.2
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 67888887764
No 234
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.74 E-value=27 Score=21.27 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=8.7
Q ss_pred CCccccccccc
Q psy3656 82 KGCCSSCDKPI 92 (185)
Q Consensus 82 ~~~C~~C~~~i 92 (185)
...|..|.+.|
T Consensus 25 ~nRC~~CrKkv 35 (74)
T 1wfl_A 25 KNRCFMCRKKV 35 (74)
T ss_dssp TTBCSSSCCBC
T ss_pred CCcChhhCCcc
Confidence 45799999876
No 235
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=25.39 E-value=19 Score=16.69 Aligned_cols=10 Identities=50% Similarity=1.261 Sum_probs=7.4
Q ss_pred cccccCCCcc
Q psy3656 168 FFCAQCGKQF 177 (185)
Q Consensus 168 f~C~~C~~~l 177 (185)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 6788888765
No 236
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.39 E-value=91 Score=20.10 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred eeCCcCCCccchhhccCCCCCccCCccc--CceEE--eCCCeecccCcc
Q psy3656 125 ERDSRPYCEPDYHNLFSPRCSYCNGPIL--DKCVT--ALEKTWHTEHFF 169 (185)
Q Consensus 125 ~~~g~~yC~~~~~~~~~~~C~~C~~~i~--~~~~~--~~~~~~H~~Cf~ 169 (185)
+..+.-+|.+| ..|.+|++.-. +.+|. .-++.||..|..
T Consensus 51 ~~~~~W~C~~C------~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 51 VKALRWQCIEC------KTCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp HHTSCCCCTTT------CCBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred hhccccccccC------CccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 34556677777 35888887532 24443 235789988863
No 237
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.24 E-value=17 Score=21.17 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=6.1
Q ss_pred CCCccCCccc
Q psy3656 143 RCSYCNGPIL 152 (185)
Q Consensus 143 ~C~~C~~~i~ 152 (185)
.|+.|+..+.
T Consensus 35 ~CaRCGg~v~ 44 (62)
T 2a20_A 35 FCARCGGRVS 44 (62)
T ss_dssp ECTTSEEEEE
T ss_pred eecccCCEee
Confidence 3677766554
No 238
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.15 E-value=28 Score=16.26 Aligned_cols=11 Identities=45% Similarity=1.099 Sum_probs=7.9
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 66778877764
No 239
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=24.89 E-value=60 Score=18.59 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=5.6
Q ss_pred CCeecccCcc
Q psy3656 160 EKTWHTEHFF 169 (185)
Q Consensus 160 ~~~~H~~Cf~ 169 (185)
+..||..|..
T Consensus 30 ~~~~H~~C~~ 39 (66)
T 2yt5_A 30 GQGYHQLCHT 39 (66)
T ss_dssp CCEEETTTSS
T ss_pred ChHHHhhhCC
Confidence 3566666654
No 240
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.63 E-value=38 Score=19.33 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=11.5
Q ss_pred ccCCcccCceEEeCC-----CeecccCcc
Q psy3656 146 YCNGPILDKCVTALE-----KTWHTEHFF 169 (185)
Q Consensus 146 ~C~~~i~~~~~~~~~-----~~~H~~Cf~ 169 (185)
.|+++-.|..|...+ .-||..|..
T Consensus 13 ~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 13 LCHQVSYGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred ECCCCCCCCeeEeeCCCCCCCCEecccCC
Confidence 455543444444333 356666643
No 241
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=24.52 E-value=39 Score=20.03 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=16.6
Q ss_pred CCCCccCCcccC----ceEEeCCCeecc
Q psy3656 142 PRCSYCNGPILD----KCVTALEKTWHT 165 (185)
Q Consensus 142 ~~C~~C~~~i~~----~~~~~~~~~~H~ 165 (185)
..|.-|+..|.+ ++|...+++|+-
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~F 31 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHF 31 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEE
Confidence 578999999974 344556677654
No 242
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=24.22 E-value=27 Score=19.92 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=8.6
Q ss_pred CCCCccCCccc
Q psy3656 142 PRCSYCNGPIL 152 (185)
Q Consensus 142 ~~C~~C~~~i~ 152 (185)
-+|..|++.|-
T Consensus 4 VRCFTCGkvi~ 14 (55)
T 1ef4_A 4 VRCLSCGKPVS 14 (55)
T ss_dssp SSCSCTTSCCH
T ss_pred eecCCCCCChh
Confidence 47888888875
No 243
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.17 E-value=1.1e+02 Score=17.40 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCcccccccccccceee--ecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhh
Q psy3656 82 KGCCSSCDKPIVGQVIT--ALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN 138 (185)
Q Consensus 82 ~~~C~~C~~~i~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~ 138 (185)
...|..|+.. ++.+. .=...||..|..=. |. ...++.-||..|..+
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~pp-----l~----~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG--GELLCCDTCPSSYHIHCLNPP-----LP----EIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSC-----CS----SCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC--CCEEEcCCCCHHHcccccCCC-----cC----cCCCCccCChhhcCc
Confidence 4568888752 22222 22456777764321 21 123456667766443
No 244
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=24.08 E-value=11 Score=26.57 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=8.0
Q ss_pred ecccCcccccCCCcc
Q psy3656 163 WHTEHFFCAQCGKQF 177 (185)
Q Consensus 163 ~H~~Cf~C~~C~~~l 177 (185)
.|.+=+.|..|...|
T Consensus 101 ~H~~~~~C~~CH~~v 115 (158)
T 3oue_A 101 IHLSMFKCADCHTKV 115 (158)
T ss_dssp HHHTTCCGGGTBTTT
T ss_pred HhCCCCChhhhccch
Confidence 454335666666554
No 245
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.00 E-value=23 Score=28.76 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=16.3
Q ss_pred CcCCCccchhhccCC------------CCCccCCccc
Q psy3656 128 SRPYCEPDYHNLFSP------------RCSYCNGPIL 152 (185)
Q Consensus 128 g~~yC~~~~~~~~~~------------~C~~C~~~i~ 152 (185)
.+.||..|-.+++++ .|..|.-...
T Consensus 114 ~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~ 150 (386)
T 2pv0_B 114 TRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSR 150 (386)
T ss_dssp CCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCE
T ss_pred CcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcch
Confidence 456777777777765 4777765443
No 246
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.98 E-value=21 Score=17.21 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.4
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elm_A 10 YYCSQCHYSSI 20 (37)
T ss_dssp EECSSSSCEEE
T ss_pred eECCCCCcccC
Confidence 77888888764
No 247
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=23.90 E-value=52 Score=21.70 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=7.1
Q ss_pred CCCCccCCcccC
Q psy3656 142 PRCSYCNGPILD 153 (185)
Q Consensus 142 ~~C~~C~~~i~~ 153 (185)
..|..|+...++
T Consensus 60 ~~C~~C~t~~tp 71 (115)
T 4hc9_A 60 TSCANCQTTTTT 71 (115)
T ss_dssp CCCTTTCCSCCS
T ss_pred ccCCCcCCCCcc
Confidence 356677665554
No 248
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.78 E-value=34 Score=18.84 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=18.3
Q ss_pred CCcCCCccchhhccC--CCCCccCCccc
Q psy3656 127 DSRPYCEPDYHNLFS--PRCSYCNGPIL 152 (185)
Q Consensus 127 ~g~~yC~~~~~~~~~--~~C~~C~~~i~ 152 (185)
+|.--|..||.+..+ .+|..|..+-.
T Consensus 9 ~g~W~C~~C~v~N~a~~~kC~aCetpKp 36 (47)
T 2ebq_A 9 IGTWDCDTCLVQNKPEAIKCVACETPKP 36 (47)
T ss_dssp SSSEECSSSCCEECSSCSBCSSSCCBCS
T ss_pred CCceECCeeeccCccCCceecCcCCCCC
Confidence 344558888877665 68999987654
No 249
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.74 E-value=21 Score=18.04 Aligned_cols=13 Identities=38% Similarity=1.094 Sum_probs=9.4
Q ss_pred CcccccCCCccCC
Q psy3656 167 HFFCAQCGKQFGE 179 (185)
Q Consensus 167 Cf~C~~C~~~l~~ 179 (185)
=|.|..|++.+..
T Consensus 8 p~~C~~CgK~F~~ 20 (36)
T 1fv5_A 8 RFMCLPCGIAFSS 20 (36)
T ss_dssp CCEETTTTEECSC
T ss_pred CeECCCCCCccCC
Confidence 4788888887753
No 250
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.59 E-value=26 Score=16.55 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.9
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 67777877664
No 251
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.21 E-value=26 Score=16.62 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=9.4
Q ss_pred CcccccCCCccCC
Q psy3656 167 HFFCAQCGKQFGE 179 (185)
Q Consensus 167 Cf~C~~C~~~l~~ 179 (185)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 4778888887654
No 252
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.20 E-value=24 Score=16.55 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.6
Q ss_pred CcccccCCCccC
Q psy3656 167 HFFCAQCGKQFG 178 (185)
Q Consensus 167 Cf~C~~C~~~l~ 178 (185)
-|.|..|++.+.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 477888887764
No 253
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.05 E-value=47 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=17.3
Q ss_pred CCCCccCCcccC----ceEEeCCCeeccc
Q psy3656 142 PRCSYCNGPILD----KCVTALEKTWHTE 166 (185)
Q Consensus 142 ~~C~~C~~~i~~----~~~~~~~~~~H~~ 166 (185)
..|.-|+..|.+ .+|...+++|+--
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fc 33 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFC 33 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEES
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEE
Confidence 579999999984 3445556777643
No 254
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=22.73 E-value=4 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=13.5
Q ss_pred CCCccCCcccCceEEeCCCeecccCccc
Q psy3656 143 RCSYCNGPILDKCVTALEKTWHTEHFFC 170 (185)
Q Consensus 143 ~C~~C~~~i~~~~~~~~~~~~H~~Cf~C 170 (185)
.|..|+..+.+.+..+....+|..|..|
T Consensus 26 ~C~~CH~~~~g~~~~~~k~~~~~~C~~C 53 (70)
T 3h34_A 26 ECRSCHEKTPGKIRNFGKDYAHKTCKGC 53 (70)
T ss_dssp CGGGTSCSSCSCCTTCSHHHHHHHHHHH
T ss_pred ChhhccCCCCCcccchhhhhhcChhHHH
Confidence 4666666554433323333456555444
No 255
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=22.60 E-value=4 Score=24.65 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=5.7
Q ss_pred CCCccCCccc
Q psy3656 143 RCSYCNGPIL 152 (185)
Q Consensus 143 ~C~~C~~~i~ 152 (185)
.|..|+..+.
T Consensus 27 ~C~~CH~~~~ 36 (72)
T 3h4n_A 27 ECKACHETEA 36 (72)
T ss_dssp GGGGTSSSTT
T ss_pred ChhhhcCCCc
Confidence 4666665554
No 256
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.57 E-value=26 Score=16.53 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=7.8
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 67777877664
No 257
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=22.36 E-value=53 Score=19.52 Aligned_cols=9 Identities=33% Similarity=1.442 Sum_probs=4.8
Q ss_pred cccccCCCc
Q psy3656 168 FFCAQCGKQ 176 (185)
Q Consensus 168 f~C~~C~~~ 176 (185)
|.|..|...
T Consensus 57 w~Cp~C~~~ 65 (71)
T 1wen_A 57 WFCPRCSQE 65 (71)
T ss_dssp CCCTTTSSC
T ss_pred EECCCCCcc
Confidence 456666543
No 258
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.24 E-value=24 Score=16.78 Aligned_cols=13 Identities=38% Similarity=0.961 Sum_probs=9.1
Q ss_pred CcccccCCCccCC
Q psy3656 167 HFFCAQCGKQFGE 179 (185)
Q Consensus 167 Cf~C~~C~~~l~~ 179 (185)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 4778888877643
No 259
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=22.10 E-value=17 Score=21.68 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=3.6
Q ss_pred cccCCCcc
Q psy3656 170 CAQCGKQF 177 (185)
Q Consensus 170 C~~C~~~l 177 (185)
|.+|++.+
T Consensus 7 CFTCGkvi 14 (66)
T 4ayb_N 7 CFTCGSLI 14 (66)
T ss_dssp CTTTCCBC
T ss_pred cCCCcHhH
Confidence 44444444
No 260
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.09 E-value=26 Score=16.53 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=7.8
Q ss_pred cccccCCCccC
Q psy3656 168 FFCAQCGKQFG 178 (185)
Q Consensus 168 f~C~~C~~~l~ 178 (185)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elv_A 10 YDCHICERKFK 20 (36)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 67788877664
No 261
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.08 E-value=33 Score=18.66 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.5
Q ss_pred CeecccCc
Q psy3656 161 KTWHTEHF 168 (185)
Q Consensus 161 ~~~H~~Cf 168 (185)
+.||..|.
T Consensus 23 ~~~H~~Cl 30 (51)
T 1f62_A 23 KAFHLFCL 30 (51)
T ss_dssp CEECHHHH
T ss_pred hhhCcccC
Confidence 34444443
No 262
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=22.05 E-value=24 Score=18.62 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=7.9
Q ss_pred cccccCCCccCC
Q psy3656 168 FFCAQCGKQFGE 179 (185)
Q Consensus 168 f~C~~C~~~l~~ 179 (185)
++|..|++.|..
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 467777777643
No 263
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.93 E-value=22 Score=31.58 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHhhcCCCCCCCCcccccccccccceeeecCcccccCCccCCCCCCCCCCCCeeeeCCcCCCccchhhccCCCCCccCCc
Q psy3656 71 EMSRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGP 150 (185)
Q Consensus 71 ~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~~~~~~~~~~C~~C~~~ 150 (185)
..++..++....+.|..| ..|+-.-.++.||.+--.|..|+-.| .++..++...-.+....-- +.
T Consensus 145 PYDR~~TsM~~F~mC~~C----~~EY~dp~dRRfhAqp~aC~~CGP~l---~l~~~~~~~~~~~~i~~a~--------~~ 209 (772)
T 4g9i_A 145 PYDRENTTMKEFPMCDFC----RSEYEDPLNRRYHAEPTACPVCGPSY---RLYTSDGQEIYGDPLRKAA--------EL 209 (772)
T ss_dssp SCCGGGSGGGGSCCCHHH----HHHHHCSSSTTTTCTTCCCTTTSCCE---EEESSSCBCCTTHHHHHHH--------HH
T ss_pred CCCCCCCcCCCCCCChhH----HHHhCCCCCCCCcCCCCCCccCCceE---EEEcCCCCeechHHHHHHH--------HH
Q ss_pred cc-CceEEeCC-CeecccC
Q psy3656 151 IL-DKCVTALE-KTWHTEH 167 (185)
Q Consensus 151 i~-~~~~~~~~-~~~H~~C 167 (185)
|. |.+|.+.+ ..||.-|
T Consensus 210 l~~G~iva~kg~ggy~L~c 228 (772)
T 4g9i_A 210 IDKGYIVAIKGIGGIHLAC 228 (772)
T ss_dssp HTTSCCEEECCSSSBEEEC
T ss_pred HHcCCEEEEecCCeeEEEE
No 264
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.87 E-value=46 Score=19.20 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=10.9
Q ss_pred ccCCcccCceEEeCC-----CeecccCc
Q psy3656 146 YCNGPILDKCVTALE-----KTWHTEHF 168 (185)
Q Consensus 146 ~C~~~i~~~~~~~~~-----~~~H~~Cf 168 (185)
.|+++-.+..|...+ .-||..|.
T Consensus 15 ~C~~~~~g~MI~CD~c~C~~~WfH~~Cv 42 (62)
T 2g6q_A 15 LCNQVSYGEMIGCDNEQCPIEWFHFSCV 42 (62)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETGGG
T ss_pred ECCCCCCCCeeeeeCCCCCcccEecccC
Confidence 455543344343333 45666654
No 265
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=21.70 E-value=40 Score=19.28 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=3.0
Q ss_pred CeecccC
Q psy3656 161 KTWHTEH 167 (185)
Q Consensus 161 ~~~H~~C 167 (185)
+.||..|
T Consensus 31 ~~fH~~C 37 (61)
T 2l5u_A 31 RAYHMVC 37 (61)
T ss_dssp CEEEHHH
T ss_pred hhhhhhc
Confidence 3444443
No 266
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.60 E-value=40 Score=22.20 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCCCccCCccc-----CceEEeCCCeecc---cCcccccCCCccC
Q psy3656 142 PRCSYCNGPIL-----DKCVTALEKTWHT---EHFFCAQCGKQFG 178 (185)
Q Consensus 142 ~~C~~C~~~i~-----~~~~~~~~~~~H~---~Cf~C~~C~~~l~ 178 (185)
.+|..|+...+ ...+...|..+.. ..+.|..|+..+-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 46888876532 2345667765543 5888999987763
No 267
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.40 E-value=42 Score=17.14 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCCccCCcccCceEEeCCCeecccCcccc
Q psy3656 143 RCSYCNGPILDKCVTALEKTWHTEHFFCA 171 (185)
Q Consensus 143 ~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~ 171 (185)
.|..|+.+=+ .|...++.|...|-.|.
T Consensus 2 lC~~C~~peT--~l~~~~~~~~l~C~aCG 28 (36)
T 1k81_A 2 ICRECGKPDT--KIIKEGRVHLLKCMACG 28 (36)
T ss_dssp CCSSSCSCEE--EEEEETTEEEEEEETTT
T ss_pred CCcCCCCCCc--EEEEeCCcEEEEhhcCC
Confidence 3667776622 23335666766555553
No 268
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=21.22 E-value=58 Score=19.24 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=12.5
Q ss_pred CCccCCccc-CceEEe--CCCeecccCcc
Q psy3656 144 CSYCNGPIL-DKCVTA--LEKTWHTEHFF 169 (185)
Q Consensus 144 C~~C~~~i~-~~~~~~--~~~~~H~~Cf~ 169 (185)
|.+|++.-. +.+|.- -++.||..|..
T Consensus 21 C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLD 49 (70)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEEGGGSS
T ss_pred CcCCCCcCCCCCEEEcCCCCCceecccCC
Confidence 455554433 233322 23667776654
No 269
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.19 E-value=35 Score=16.68 Aligned_cols=12 Identities=33% Similarity=0.994 Sum_probs=8.7
Q ss_pred CcccccCCCccC
Q psy3656 167 HFFCAQCGKQFG 178 (185)
Q Consensus 167 Cf~C~~C~~~l~ 178 (185)
=|.|..|++.+.
T Consensus 10 ~~~C~~C~k~f~ 21 (42)
T 2yte_A 10 PYSCAECKETFS 21 (42)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeECCCCCCccC
Confidence 377888887764
No 270
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=21.18 E-value=42 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCccCCcccCceEEeCCCeecccCc---------ccccCCCccCCC
Q psy3656 143 RCSYCNGPILDKCVTALEKTWHTEHF---------FCAQCGKQFGEA 180 (185)
Q Consensus 143 ~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 180 (185)
.|..|.....+.++...|++|...|. +|..|+.+|..+
T Consensus 210 ~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 210 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp BCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 58888888888888788898888774 288999888644
No 271
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.80 E-value=28 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.240 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCCCCeeeeCCcCCCccc
Q psy3656 109 FICTHCNQELGTRNFFERDSRPYCEPD 135 (185)
Q Consensus 109 f~C~~C~~~L~~~~~~~~~g~~yC~~~ 135 (185)
+.|..|+.+|. +...+|.++|..|
T Consensus 11 L~CP~ck~~L~---~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR---YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE---EETTTTEEEETTT
T ss_pred hCCCCCCCcCe---EeCCCCEEEcCCC
Confidence 45555555541 2233455555554
No 272
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=20.73 E-value=42 Score=17.05 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=14.0
Q ss_pred CcCCCccchhhccC--CCCCccCCc
Q psy3656 128 SRPYCEPDYHNLFS--PRCSYCNGP 150 (185)
Q Consensus 128 g~~yC~~~~~~~~~--~~C~~C~~~ 150 (185)
|.--|..|+.+... .+|..|..+
T Consensus 6 G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 6 GSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CceECCeeEeECccccCEEcccCCc
Confidence 33446777766554 567777654
No 273
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.57 E-value=51 Score=18.79 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=11.6
Q ss_pred ccCCcccCceEEeCC-----CeecccCcc
Q psy3656 146 YCNGPILDKCVTALE-----KTWHTEHFF 169 (185)
Q Consensus 146 ~C~~~i~~~~~~~~~-----~~~H~~Cf~ 169 (185)
.|+++-.+..|...+ .-||..|..
T Consensus 14 ~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 14 LCHQVSYGEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred ECCCcCCCCEEEeCCCCCCCceEehhcCC
Confidence 455543344444333 346776654
No 274
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.49 E-value=28 Score=16.84 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=8.8
Q ss_pred CcccccCCCccC
Q psy3656 167 HFFCAQCGKQFG 178 (185)
Q Consensus 167 Cf~C~~C~~~l~ 178 (185)
-|.|..|++.+.
T Consensus 6 ~~~C~~C~k~f~ 17 (39)
T 1njq_A 6 SYTCSFCKREFR 17 (39)
T ss_dssp SEECTTTCCEES
T ss_pred ceECCCCCcccC
Confidence 477888888764
No 275
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.47 E-value=28 Score=20.72 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=10.0
Q ss_pred cCCCCCCCCCCCCeeeeCCcCCCccc
Q psy3656 110 ICTHCNQELGTRNFFERDSRPYCEPD 135 (185)
Q Consensus 110 ~C~~C~~~L~~~~~~~~~g~~yC~~~ 135 (185)
.|..|+.+|. +...++.++|..|
T Consensus 10 ~CP~ck~~L~---~~~~~~~LiC~~c 32 (68)
T 2hf1_A 10 VCPLCKGPLV---FDKSKDELICKGD 32 (68)
T ss_dssp BCTTTCCBCE---EETTTTEEEETTT
T ss_pred ECCCCCCcCe---EeCCCCEEEcCCC
Confidence 4555554441 2223445555443
No 276
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.44 E-value=77 Score=15.70 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=13.1
Q ss_pred CcCCCccchhhccC--CCCCccCCcc
Q psy3656 128 SRPYCEPDYHNLFS--PRCSYCNGPI 151 (185)
Q Consensus 128 g~~yC~~~~~~~~~--~~C~~C~~~i 151 (185)
|.=.|..|....|+ ..|..|+.+-
T Consensus 5 gDW~C~~C~~~Nfa~R~~C~~C~~pk 30 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSECNMCNTPK 30 (33)
T ss_dssp SSCBCSSSCCBCCTTCSBCSSSCCBT
T ss_pred CCcccCCCCCccccccccccccCCcC
Confidence 33445555554554 4577776653
No 277
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=20.41 E-value=38 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCCCccCCcccCceEEeCCCeecccCccccc
Q psy3656 142 PRCSYCNGPILDKCVTALEKTWHTEHFFCAQ 172 (185)
Q Consensus 142 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~ 172 (185)
-.|..|+.|=+ .|.-.++.|...|-.|..
T Consensus 104 VlC~~C~sPdT--~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDT--ILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCC--CSCSSCSTTTSSCCC---
T ss_pred eECCCCCCcCc--EEEEeCCeEEEEecCCCC
Confidence 57999988733 233357777777766643
No 278
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=39 Score=16.48 Aligned_cols=12 Identities=50% Similarity=1.198 Sum_probs=8.4
Q ss_pred CcccccCCCccC
Q psy3656 167 HFFCAQCGKQFG 178 (185)
Q Consensus 167 Cf~C~~C~~~l~ 178 (185)
=|.|..|++.+.
T Consensus 11 ~~~C~~C~k~f~ 22 (42)
T 2ytb_A 11 PYRCDQCGKAFS 22 (42)
T ss_dssp SBCCTTTTCCBS
T ss_pred CeeCCCccchhC
Confidence 367888887764
No 279
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=20.31 E-value=53 Score=26.64 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.6
Q ss_pred ccccccccc
Q psy3656 84 CCSSCDKPI 92 (185)
Q Consensus 84 ~C~~C~~~i 92 (185)
.|..|....
T Consensus 334 ~C~ICle~~ 342 (389)
T 2y1n_A 334 LCKICAEND 342 (389)
T ss_dssp BCTTTSSSB
T ss_pred CCCccCcCC
Confidence 455555444
No 280
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.11 E-value=46 Score=16.76 Aligned_cols=14 Identities=43% Similarity=1.032 Sum_probs=9.6
Q ss_pred CcccccCCCccCCC
Q psy3656 167 HFFCAQCGKQFGEA 180 (185)
Q Consensus 167 Cf~C~~C~~~l~~~ 180 (185)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 12 PFKCVECGKGFSRR 25 (46)
T ss_dssp SBCCSSSCCCBSST
T ss_pred CcccCccCcccCCH
Confidence 37788888877543
No 281
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.06 E-value=38 Score=16.74 Aligned_cols=12 Identities=42% Similarity=1.223 Sum_probs=8.3
Q ss_pred CcccccCCCccC
Q psy3656 167 HFFCAQCGKQFG 178 (185)
Q Consensus 167 Cf~C~~C~~~l~ 178 (185)
=|.|..|++.+.
T Consensus 12 ~~~C~~C~k~f~ 23 (44)
T 2en7_A 12 PYVCNECGKAFR 23 (44)
T ss_dssp SSCCTTTCCCCS
T ss_pred CeECCCCCCccC
Confidence 367778877764
No 282
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.06 E-value=38 Score=17.03 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=9.2
Q ss_pred CcccccCCCccCC
Q psy3656 167 HFFCAQCGKQFGE 179 (185)
Q Consensus 167 Cf~C~~C~~~l~~ 179 (185)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3778888887643
Done!