RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3656
(185 letters)
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 57.7 bits (140), Expect = 8e-13
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 135 DYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHF 168
D+ +FSP+C CN P+L+ ++A++ WH E F
Sbjct: 2 DFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 48.5 bits (116), Expect = 2e-09
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 84 CCSSCDKPIVGQVITALGKTWHPEHF 109
C C++P++ ++A+ WHPE F
Sbjct: 10 KCGGCNRPVLENYLSAMDTVWHPECF 35
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 55.5 bits (134), Expect = 5e-12
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 138 NLFSPRCSYCNGPILDKCVTALEKTWHTEH 167
++ P C C PI + V A+ K WH EH
Sbjct: 2 SMGVPICGACRRPIEGRVVNAMGKQWHVEH 31
Score = 49.8 bits (119), Expect = 7e-10
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEH 108
C +C +PI G+V+ A+GK WH EH
Sbjct: 8 CGACRRPIEGRVVNAMGKQWHVEH 31
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 53.9 bits (130), Expect = 2e-11
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP 142
F+C C Q+ F+E + R YCE D+ LF+P
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 52.8 bits (127), Expect = 7e-11
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHF 109
C+ C++ I G + ALGK+WHPE F
Sbjct: 21 CAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 51.7 bits (124), Expect = 2e-10
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 141 SPRCSYCNGPILDKCVTALEKTWHTEHF 168
+P C++CN I + AL K+WH E F
Sbjct: 18 TPMCAHCNQVIRGPFLVALGKSWHPEEF 45
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 38.2 bits (89), Expect = 2e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 111 CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 144
C C + L + ++D YC+ Y F P+
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 35
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 35.9 bits (83), Expect = 9e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNL 139
+C C T +FFE D RP+CE YH+
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHYHHR 30
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 35.0 bits (81), Expect = 2e-04
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 111 CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 149
C++CN +L + R YC+P ++ LF + +Y G
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEG 40
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 34.3 bits (79), Expect = 4e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141
+CT C ++L + F RD YC + +L++
Sbjct: 1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 34.4 bits (79), Expect = 5e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 135 DYHNLFSPRCSYCNGPILDKCVTALEKTWHTE 166
DY L+ RC C+ I + V+AL KT+H +
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPD 40
Score = 32.1 bits (73), Expect = 0.003
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 84 CCSSCDKPIVGQVITALGKTWHPE 107
C SCD+ I G+V++ALGKT+HP+
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPD 40
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 33.2 bits (76), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141
+CT C L + F RD PYC + LF+
Sbjct: 1 VCTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 32.5 bits (74), Expect = 0.002
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141
IC C Q +GT++F +D++ +C P Y +
Sbjct: 1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 32
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 32.2 bits (73), Expect = 0.002
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHF 109
C C + I+G+VI A+ +WHPE F
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 31.3 bits (71), Expect = 0.005
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 134 PDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHF 168
P Y N F+PRC+ C+ + VT ++ WH E
Sbjct: 1 PCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECL 35
Score = 23.6 bits (51), Expect = 3.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHF 109
C+ C K + +T + WH E
Sbjct: 11 CARCSKTLTQGGVTYRDQPWHRECL 35
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 30.5 bits (69), Expect = 0.008
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141
+C+ C Q LG+R+F YC P Y N F+
Sbjct: 1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 32
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 30.6 bits (69), Expect = 0.009
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 109 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141
F+C C + +ER YCE Y+ LF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 33
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 30.5 bits (69), Expect = 0.012
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 84 CCSSCDKPIVGQVITALGKTWHPEHF 109
C++C +PI+ +++ A+GK +HP F
Sbjct: 10 KCATCSQPILDRILRAMGKAYHPGCF 35
Score = 27.8 bits (62), Expect = 0.10
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 133 EPDYHNLFSPRCSYCNGPILDKCVTALEKTWHTEHF 168
E Y +C+ C+ PILD+ + A+ K +H F
Sbjct: 1 EGCYVATLE-KCATCSQPILDRILRAMGKAYHPGCF 35
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 31.0 bits (70), Expect = 0.015
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 143
+C C + L + YC+ Y + P+
Sbjct: 1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 34
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 29.7 bits (67), Expect = 0.020
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 136 YHNLFSPRCSYCNGPIL--DKCVTALEKTWHTEHF 168
SP+C C I+ D+ V WH + F
Sbjct: 3 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 29.0 bits (65), Expect = 0.030
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 111 CTHCNQELGTRNFFERDSRPYCEPDYHNLF 140
C C+ L T + +D PYCE DYH F
Sbjct: 2 CQTCSVIL-TGEYISKDGVPYCESDYHAQF 30
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 28.2 bits (63), Expect = 0.081
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 111 CTHCNQELGTRNFFERDSRPYCE-PDYHNLFSPR 143
C C + L + E + +PYC P Y +F P+
Sbjct: 2 CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPK 35
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.5 bits (58), Expect = 0.29
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 85 CSSCDKPIVGQVITALGKTWHP 106
C SC+K I G+V+ A K +HP
Sbjct: 8 CDSCEKYITGRVLEAGEKHYHP 29
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 25.5 bits (56), Expect = 0.49
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 142 PRCSYCNGPILDK-CVTALEKTWHTE 166
C C I D+ + A+++ WH +
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHED 29
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 25.8 bits (57), Expect = 0.50
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 143 RCSYCNGPILDKCV-TALEKTWHTE 166
RC+ C G I D+ + A++ WH+
Sbjct: 4 RCAGCGGKIADRFLLYAMDSYWHSR 28
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 25.6 bits (56), Expect = 0.52
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCEPDYHN 138
+C+ C +L ++F+ + R YCE Y
Sbjct: 1 VCSTCRAQLRGQHFYAVERRAYCEGCYVA 29
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 25.5 bits (56), Expect = 0.65
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 111 CTHCNQELGTRNF-FERDSRPYCEPDYHNLFS 141
C C++ L F + S+ +C D+H F+
Sbjct: 2 CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 25.1 bits (55), Expect = 0.80
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 111 CTHCNQELGTRNFFERDSRPYCE-PDYHNLF 140
C C++ L E D +P+C P Y LF
Sbjct: 2 CERCSKTLTPGGHAEHDGKPFCHKPCYATLF 32
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609
{Pyrococcus furiosus [TaxId: 2261]}
Length = 124
Score = 26.9 bits (59), Expect = 0.82
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 5 VGTFGDRLVVCL--LLQTEPAGSPEGQPVPQQLEHSVTDSSSVSYSKPNQPVHQKG 58
+ FGD L+ L L TE G P G VP + + +S + H KG
Sbjct: 6 LAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALELTGLSKNLRRVDKHAKG 61
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 45
Score = 25.5 bits (56), Expect = 0.83
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHF 109
C C IVG V+ A K HPE F
Sbjct: 21 CDKCGSGIVGAVVKARDKYRHPECF 45
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 27.1 bits (59), Expect = 1.2
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Query: 84 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 143
K ++ Q + L + + I H + L ++ E P+
Sbjct: 87 ERLGVLKCLITQNVDDLHERAGSRNVIHLHGS--LRVVRCTSCNNSFEVESAPKIPPLPK 144
Query: 144 CSYCNGPILDKCVTALEKTWHTEHFFCAQCGKQFGEAMV 182
C C + V A E + ++ +V
Sbjct: 145 CDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIV 183
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 24.4 bits (53), Expect = 1.3
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 111 CTHCNQELGTRNFFERDSRPYCEPDYHNLFS 141
C HC + F E YCE Y F+
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.4 bits (53), Expect = 1.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHF 109
C C IVG + + HPE +
Sbjct: 11 CDKCGTGIVGVFVKLRDRHRHPECY 35
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 26.8 bits (58), Expect = 1.7
Identities = 9/80 (11%), Positives = 17/80 (21%), Gaps = 7/80 (8%)
Query: 101 GKTW-------HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD 153
G T HP+ ++ FF + Y F + + +
Sbjct: 38 GTTALYLFLGMHPDLSSNYPSSETFEEIQFFNGHNYHKGIDWYMEFFPIPSNTTSDFYFE 97
Query: 154 KCVTALEKTWHTEHFFCAQC 173
K +
Sbjct: 98 KSANYFDSEVAPRRAAALLP 117
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.6 bits (51), Expect = 2.3
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 85 CSSCDKPIV-GQVITALGKTWHP 106
C CDK + + +++LGK WH
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHK 27
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 25.0 bits (55), Expect = 2.4
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 54 VHQKGKQLDCMLD--SLTAEMSRQGVT----TTQKGCCSSCDKPIVGQV 96
G+ L+ + +G+T + S DK VGQV
Sbjct: 14 ARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQV 62
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII,
N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Length = 103
Score = 25.0 bits (54), Expect = 2.9
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 20/71 (28%)
Query: 81 QKGCCSSCDKPIVGQVITALGKTWHPEH--------------FICTHCNQELGT-RNFFE 125
Q G C C + + V + H +H +C C+ G ++ F
Sbjct: 19 QNGKCLICQRELNPDV-----QANHLDHDHELNGPKAGKVRGLLCNLCDAAEGQMKHKFN 73
Query: 126 RDSRPYCEPDY 136
R DY
Sbjct: 74 RSGLKGQGVDY 84
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.7 bits (51), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 85 CSSCDKPIV-GQVITALGKTWH 105
C+ C + I GQ + AL K WH
Sbjct: 11 CAGCKEEIKHGQSLLALDKQWH 32
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.4 bits (50), Expect = 3.6
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQE 117
C +C K + GQ TA + + C C +
Sbjct: 2 CVTCSKKLAGQRFTA-----VEDQYYCVDCYKN 29
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 22.9 bits (49), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 144 CSYCNGPILDKCVTALEKTWHTEHF 168
C C PI VT E+ WH E F
Sbjct: 1 CVQCKKPITTGGVTYREQPWHKECF 25
Score = 22.9 bits (49), Expect = 4.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 85 CSSCDKPIVGQVITALGKTWHPEHF 109
C C KPI +T + WH E F
Sbjct: 1 CVQCKKPITTGGVTYREQPWHKECF 25
>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 418
Score = 25.8 bits (56), Expect = 4.2
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 67 SLTAEMSRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHC 114
++ + CDK + G +I AL P F+
Sbjct: 133 AMATAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGP 180
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 90
Score = 24.4 bits (53), Expect = 4.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 54 VHQKGKQLDCMLDSLTAEMSRQG-------VTTTQKGCCSSCDKPIVGQVITALGKTWHP 106
GK L+ + + + + V + S DK +VGQV + K P
Sbjct: 14 AKLTGKALEMNI-GYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKP 72
Query: 107 EHF 109
+ +
Sbjct: 73 DAY 75
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 184
Score = 24.9 bits (53), Expect = 6.0
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 104 WHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDKCVTALEKTW 163
+ + RN + + YC+ + LF G + ++ +
Sbjct: 85 ETIGNEGILKLLEGKDNRNAYFKTVIGYCDENGVRLF---KGIVKGRVSEEIRSKGYGFA 141
Query: 164 HTEHFFCAQCGKQFGE 179
+ F + + F E
Sbjct: 142 YDSIFIPEEEERTFAE 157
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 22.3 bits (47), Expect = 7.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 111 CTHCNQELGTRNFFERDSRPYC 132
C++C Q +GT +FF + YC
Sbjct: 2 CSNCKQVIGTGSFFPKGEDFYC 23
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 22.4 bits (48), Expect = 7.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCE 133
+CT C L + F + + YCE
Sbjct: 1 VCTDCGTNLKQKGHFFVEDQIYCE 24
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 22.2 bits (47), Expect = 8.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 144 CSYCNGPILDKCVTALEKTWHTEHF 168
C CN I +T ++ WH + F
Sbjct: 1 CVKCNKAITSGGITYQDQPWHADCF 25
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 31
Score = 22.1 bits (47), Expect = 9.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 110 ICTHCNQELGTRNFFERDSRPYCE 133
+C CN L + +F + YCE
Sbjct: 1 VCADCNLNLKQKGYFFVEGELYCE 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.438
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,774
Number of extensions: 32102
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 79
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)