BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3657
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 22 LFSTYVDELKSLWDDVAIRQAFE--RRSEYQLGDSIQYFFDNWDRISRRAVKRDEKKPLF 79
LF +D L V+I++ F + ++L D +Y +DR +R+ KPLF
Sbjct: 271 LFLNKMDLLVEKVKSVSIKKHFPDFKGDPHRLEDVQRYLVQCFDR-----KRRNRSKPLF 325
Query: 80 HHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 113
HHFTTA+DTENI+ VF+AVK+TIL NL+D+MLQ
Sbjct: 326 HHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 359
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 2 NAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFF 59
N H + F+N ++ F YV L +LW D IR+AF RRSE+QLG+S++YF
Sbjct: 102 NEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFL 161
Query: 60 DNWDRISR 67
DN DRI +
Sbjct: 162 DNLDRIGQ 169
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 2 NAIHAEKIFQFDN------NTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSI 55
N +H +K+ FD +++R+F Y+ +++LW+D I+ A++RR E+QLG+S+
Sbjct: 76 NQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV 135
Query: 56 QYFFDNWDRIS 66
+YF DN D++
Sbjct: 136 KYFLDNLDKLG 146
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 68 RAVKRDEK-KPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 113
R +RD++ +PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 292 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 338
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 2 NAIHAEKIFQFDN------NTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSI 55
N +H +K+ FD +++R+F Y+ +++LW+D I+ A++RR E+QLG+S+
Sbjct: 76 NQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV 135
Query: 56 QYFFDNWDRIS 66
+YF DN D++
Sbjct: 136 KYFLDNLDKLG 146
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 68 RAVKRDEK-KPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 113
R +RD++ +PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 292 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 338
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 2 NAIHAEKIFQFDN------NTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSI 55
N +H +K+ FD +++R+F Y+ +++LW+D I+ A++RR E+QLG+S+
Sbjct: 100 NQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV 159
Query: 56 QYFFDNWDRIS 66
+YF DN D++
Sbjct: 160 KYFLDNLDKLG 170
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 68 RAVKRDEK-KPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 113
R +RD++ +PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 316 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 362
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 2 NAIHAEKIFQFDN------NTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSI 55
N +H +K+ FD +++R+F Y+ +++LW+D I+ A++RR E+QLG+S+
Sbjct: 79 NQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESV 138
Query: 56 QYFFDNWDRIS 66
+YF DN D++
Sbjct: 139 KYFLDNLDKLG 149
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 298 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 339
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
N HA+ + + D S + YVD +KSLW+D I++ ++RR EYQL DS +Y+ ++
Sbjct: 102 NKAHAQLVREVDVEKV--SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 159
Query: 62 WDRIS 66
DR++
Sbjct: 160 LDRVA 164
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 73 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 315 DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 354
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
N HA+ + + D S + YVD +KSLW+D I++ ++RR EYQL DS +Y+ ++
Sbjct: 100 NKAHAQLVREVDVEKV--SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 157
Query: 62 WDRIS 66
DR++
Sbjct: 158 LDRVA 162
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 73 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 313 DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 352
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
N HA+ + + D S + YVD +KSLW+D I++ ++RR EYQL DS +Y+ ++
Sbjct: 100 NKAHAQLVREVDVEKV--SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 157
Query: 62 WDRIS 66
DR++
Sbjct: 158 LDRVA 162
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 73 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 313 DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 352
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
N HA+ + + D S + YVD +KSLW+D I++ ++RR EYQL DS +Y+ ++
Sbjct: 74 NKAHAQLVREVDVEKV--SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 131
Query: 62 WDRIS 66
DR++
Sbjct: 132 LDRVA 136
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 73 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 287 DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 326
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 29/37 (78%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRIS 66
+KSLW+D I++ ++RR EYQL DS +Y+ ++ DR++
Sbjct: 120 IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA 156
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 73 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 307 DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 346
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 311 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 163
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 311 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 163
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 312 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 353
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 164
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 288 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 329
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 103 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 140
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 312 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 353
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 164
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 311 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 163
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 311 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 163
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 287 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 328
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 102 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 139
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 311 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 163
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 281 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 322
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 96 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 133
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 283 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 324
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 98 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 135
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 282 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 323
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 97 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 134
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 285 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 326
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 100 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 137
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 286 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 327
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EY L DS Y+ ++ DRI++
Sbjct: 101 IKRLWKDSGVQACFNRSREYLLNDSAAYYLNDLDRIAQ 138
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 286 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 327
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 101 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 138
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL+D L
Sbjct: 283 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 324
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 98 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 135
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N+ VF+AV + I+ NL+D L
Sbjct: 312 KRKDTKEIYTHFTCATDTKNVCFVFDAVTDVIIKNNLKDCGL 353
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 164
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A DT+N++ VF+AV + I+ NL D L
Sbjct: 314 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLPDCGL 355
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 129 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 166
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 19 DSRLFST-YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRIS 66
D+ FS + + LW D I++ F R EYQL DS +Y+ D+ DRI
Sbjct: 95 DTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDRIG 143
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 72 RDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
R K ++ H T A DT NI++VF+AV + I+ NLR L
Sbjct: 292 RSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGCGL 332
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
KR + K ++ HFT A D +N++ VF+AV + I+ NL+D L
Sbjct: 318 KRKDTKEIYTHFTCATDAKNVQFVFDAVTDVIIKNNLKDCGL 359
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 133 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 170
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 26 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+ + K+LW+D +R +ER +EYQL D QYF D D I +
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 187
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 QYFF-DNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+YF D + RIS D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 338 KYFIRDEFLRIS--TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 26 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+ + K+LW+D +R +ER +EYQL D QYF D D I +
Sbjct: 132 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 173
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 QYFF-DNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+YF D + RIS D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 324 KYFIRDEFLRIS--TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 379
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 26 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+ + K+LW+D +R +ER +EYQL D QYF D D I +
Sbjct: 132 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 173
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 QYFF-DNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+YF D + RIS D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 324 KYFIRDEFLRIS--TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 379
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 26 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+ + K+LW+D +R +ER +EYQL D QYF D D I +
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 QYFF-DNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+YF D + RIS D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 338 KYFIRDEFLRIS--TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 26 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+ + K+LW+D +R +ER +EYQL D QYF D D I +
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 56 QYFF-DNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+YF D + RIS D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 338 KYFIRDEFLRIS--TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+R + K ++ HFT A DT+N++ VF+AV + I+ NL++ L
Sbjct: 288 RRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRIS+
Sbjct: 103 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ 140
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+R + K ++ HFT A DT+N++ VF+AV + I+ NL++ L
Sbjct: 288 RRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EY L DS Y+ ++ DRIS+
Sbjct: 103 IKRLWRDGGVQACFSRSREYLLNDSASYYLNDLDRISQ 140
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+R + K ++ HFT A DT+N++ VF+AV + I+ NL++ L
Sbjct: 281 RRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 322
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRIS+
Sbjct: 96 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ 133
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 72 RDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 284 RRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 324
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRI 65
D ++ LW D I+ F+R SEYQL DS Y+ + +R+
Sbjct: 96 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL 133
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 72 RDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 315 RRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 355
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRI 65
D ++ LW D I+ F+R SEYQL DS Y+ + +R+
Sbjct: 127 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL 164
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRIS+
Sbjct: 126 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ 163
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 109
+R + K ++ HFT A DT+N++ VF+AV + I+ NL++
Sbjct: 311 RRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 349
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 72 RDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 283 RRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 323
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRI 65
D ++ LW D I+ F+R SEYQL DS Y+ + +R+
Sbjct: 95 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL 132
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 72 RDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
R + K ++ H T A DT+N+K VF+AV + I+ NL+D L
Sbjct: 309 RRDVKEIYSHXTCATDTQNVKFVFDAVTDIIIKENLKDCGL 349
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRI 65
D ++ LW D I+ F+R SEYQL DS Y+ + +R+
Sbjct: 121 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL 158
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 96 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 133
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 103
KR + K ++ HFT + DT+N++ VF+AV + I+
Sbjct: 281 KRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVII 313
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 30 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 95 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 132
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 103
KR + K ++ HFT A DT+N++ VF+AV + I+
Sbjct: 280 KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 312
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 27 VDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRIS 66
V ++++LW D I+ +E +++QL D +Y F+N RI+
Sbjct: 91 VGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIA 130
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 33.5 bits (75), Expect = 0.027, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 21 RLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRIS 66
RL + +++LW D AI++ R +E Q+ D +Y +N R+S
Sbjct: 101 RLTKDIAEGIETLWKDPAIQETXARGNELQVPDXTKYLMENLKRLS 146
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 82 FTTAVDTENI-----KIVFNAVKNTILHRNLRD 109
FT++V E + KIV A KNTILHR + D
Sbjct: 145 FTSSVTGEGLEELKEKIVEYAQKNTILHRXILD 177
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 82 FTTAVDTENI-----KIVFNAVKNTILHRNLRD 109
FT++V E + KIV A KNTILHR + D
Sbjct: 145 FTSSVTGEGLEELKEKIVEYAQKNTILHRMILD 177
>pdb|2AMO|A Chain A, Loose Dimer Of A Bacillus Subtilis Nitric Oxide Synthase
pdb|2AMO|B Chain B, Loose Dimer Of A Bacillus Subtilis Nitric Oxide Synthase
Length = 362
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 FFDNWDRISRRAV--KRDEKKPLFHHFTTAVDTENIK 92
F+++ + I RR V K D + LFHH TA + I+
Sbjct: 70 FWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIR 106
>pdb|2AN2|A Chain A, P332g, A333s Double Mutant Of The Bacillus Subtilis Nitric
Oxide Synthase
Length = 360
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 FFDNWDRISRRAV--KRDEKKPLFHHFTTAVDTENIK 92
F+++ + I RR V K D + LFHH TA + I+
Sbjct: 70 FWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIR 106
>pdb|2FC2|A Chain A, No-Heme Complex In A Bacterial Nitric Oxide Synthase. An
Fe(Iii)-No May Cause Nitrosation.
pdb|2FC2|B Chain B, No-Heme Complex In A Bacterial Nitric Oxide Synthase. An
Fe(Iii)-No May Cause Nitrosation
Length = 363
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 FFDNWDRISRRAV--KRDEKKPLFHHFTTAVDTENIK 92
F+++ + I RR V K D + LFHH TA + I+
Sbjct: 71 FWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIR 107
>pdb|2AN0|A Chain A, Crystal Structure Of The P332g Mutant Of The Bacillus
Subtilis Nos
Length = 361
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 FFDNWDRISRRAV--KRDEKKPLFHHFTTAVDTENIK 92
F+++ + I RR V K D + LFHH TA + I+
Sbjct: 71 FWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIR 107
>pdb|1M7Z|A Chain A, Structure Of Nitric Oxide Synthase Heme Protein From
Bacillus Subtilis With N-Hydroxy-Arginine And
Tetrahydrofolate Bound
pdb|2FC1|A Chain A, Heme No Complex In Nos
Length = 361
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 FFDNWDRISRRAV--KRDEKKPLFHHFTTAVDTENIK 92
F+++ + I RR V K D + LFHH TA + I+
Sbjct: 71 FWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIR 107
>pdb|2FBZ|X Chain X, Heme-No Complex In A Bacterial Nitric Oxide Synthase
pdb|1M7V|A Chain A, Structure Of A Nitric Oxide Synthase Heme Protein From
Bacillus Subtilis With Tetrahydrofolate And Arginine
Bound
Length = 363
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 FFDNWDRISRRAV--KRDEKKPLFHHFTTAVDTENIK 92
F+++ + I RR V K D + LFHH TA + I+
Sbjct: 71 FWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIR 107
>pdb|2X6Y|A Chain A, Tailspike Protein Mutant D339a Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 10 FQFDNNTCIDSRLFSTYVDELKSLWD 35
+Q+ NT R+ S +DE SLWD
Sbjct: 20 YQYRRNTGSTMRMVSDVLDERVSLWD 45
>pdb|2X6X|A Chain A, Tailspike Protein Mutant D339n Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
Length = 600
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 10 FQFDNNTCIDSRLFSTYVDELKSLWD 35
+Q+ NT R+ S +DE SLWD
Sbjct: 20 YQYRRNTGSTMRMVSDVLDERVSLWD 45
>pdb|2X6W|A Chain A, Tailspike Protein Mutant E372q Of E.Coli Bacteriophage
Hk620 In Complex With Hexasaccharide
pdb|4AVZ|A Chain A, Tailspike Protein Mutant E372q Of E. Coli Bacteriophage
Hk620
Length = 600
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 10 FQFDNNTCIDSRLFSTYVDELKSLWD 35
+Q+ NT R+ S +DE SLWD
Sbjct: 20 YQYRRNTGSTMRMVSDVLDERVSLWD 45
>pdb|2VJI|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620
pdb|2VJJ|A Chain A, Tailspike Protein Of E.Coli Bacteriophage Hk620 In
Complex With Hexasaccharide
pdb|2X85|A Chain A, Tailspike Protein Of E. Coli Bacteriophage Hk620 In
Complex With Hexasaccharide
Length = 600
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 10 FQFDNNTCIDSRLFSTYVDELKSLWD 35
+Q+ NT R+ S +DE SLWD
Sbjct: 20 YQYRRNTGSTMRMVSDVLDERVSLWD 45
>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|B Chain B, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|C Chain C, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|D Chain D, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|E Chain E, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|F Chain F, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|G Chain G, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|H Chain H, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|I Chain I, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|J Chain J, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|K Chain K, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|L Chain L, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
Length = 175
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 18 IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRDE-KK 76
++S S Y+ ELKS +D+V + + R ++ G+ ++ F DN+ DE +
Sbjct: 16 VNSINISHYIIELKSKFDEVNVIASTNGR-KFINGEILKQFCDNY---------YDEFED 65
Query: 77 PLFHHFTTAVDTENIKIVFNAVKNTI 102
P +H A + I I+ A NTI
Sbjct: 66 PFLNHVDIANKHDKI-IILPATSNTI 90
>pdb|3K1Q|D Chain D, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|E Chain E, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|U Chain U, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|V Chain V, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 412
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 3 AIHAEKIFQFDNNTCIDSRLFSTYVDELKSLW 34
AI ++ N +DS + TYV L S+W
Sbjct: 105 AIQPPPVWAVAENVLLDSNNYPTYVLNLSSMW 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,157,920
Number of Sequences: 62578
Number of extensions: 108164
Number of successful extensions: 519
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 110
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)