Query psy3657
Match_columns 113
No_of_seqs 142 out of 973
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 22:19:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 99.9 1.3E-24 4.6E-29 168.2 9.6 70 2-73 74-143 (327)
2 4fid_A G protein alpha subunit 99.9 2.1E-22 7.3E-27 156.7 8.3 54 20-73 84-137 (340)
3 1azs_C GS-alpha; complex (lyas 99.8 2.8E-21 9.5E-26 153.2 10.2 70 2-73 124-193 (402)
4 1zcb_A G alpha I/13; GTP-bindi 99.8 2.1E-20 7.1E-25 146.1 6.8 71 2-73 100-177 (362)
5 2xtz_A Guanine nucleotide-bind 99.8 7.8E-20 2.7E-24 142.6 9.6 68 5-73 86-153 (354)
6 1cip_A Protein (guanine nucleo 99.8 5.8E-20 2E-24 143.2 7.2 71 2-73 99-169 (353)
7 2gsv_A Hypothetical protein YV 26.9 91 0.0031 18.5 3.7 41 54-107 6-46 (80)
8 3suz_A Amyloid beta A4 precurs 17.2 1.4E+02 0.0048 22.6 4.0 44 69-112 129-172 (388)
9 2lnm_A Protein TIC 40, chlorop 16.0 86 0.0029 17.5 2.0 15 29-43 4-18 (62)
10 3c38_A Autoinducer 2 sensor ki 15.6 1.5E+02 0.0051 22.0 3.6 36 33-73 47-82 (270)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=1.3e-24 Score=168.25 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=62.9
Q ss_pred cHHHHHHHhcccCCCccCCCCCHHHHHHHHHhcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 2 n~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
|+.+++.+++.+.. ...+++++++++|+.||+|||||+||+|++||||+||++|||++++||++++|.|+
T Consensus 74 ~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT 143 (327)
T 3ohm_A 74 NKAHAQLVREVDVE--KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPT 143 (327)
T ss_dssp HHHHHHHHHTCCGG--GCCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCC
T ss_pred hHHHHHHHhccccc--ccccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCcc
Confidence 56778888877554 23579999999999999999999999999999999999999999999999999887
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=2.1e-22 Score=156.67 Aligned_cols=54 Identities=26% Similarity=0.535 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 20 SRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 20 ~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
.+++++++++|+.||+|+|||+||+|++||+|+||+.|||++++||++++|.|+
T Consensus 84 ~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT 137 (340)
T 4fid_A 84 LPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPT 137 (340)
T ss_dssp SSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCcc
Confidence 579999999999999999999999999999999999999999999999998886
No 3
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=2.8e-21 Score=153.19 Aligned_cols=70 Identities=31% Similarity=0.526 Sum_probs=61.1
Q ss_pred cHHHHHHHhcccCCCccCCCCCHHHHHHHHHhcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 2 n~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
|+..++.++++... .+..|+++++++|+.||+|+|||+||.|++||+|+||++|||++++||+.++|.|+
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT 193 (402)
T 1azs_C 124 NQFRVDYILSVMNV--PDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPS 193 (402)
T ss_dssp GHHHHHHHHHTTTC--SSCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCC
T ss_pred hHHHHHHHHhhccc--CCCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCc
Confidence 45567777776543 23579999999999999999999999999999999999999999999999888885
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=2.1e-20 Score=146.13 Aligned_cols=71 Identities=32% Similarity=0.724 Sum_probs=59.2
Q ss_pred cHHHHHHHhcccCCCc-------cCCCCCHHHHHHHHHhcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 2 NAIHAEKIFQFDNNTC-------IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 2 n~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
|+.+++.++++..... +...+ ++++++|+.||+|||||+||+|++||||+||++|||++++||+.++|.|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT 177 (362)
T 1zcb_A 100 NQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPS 177 (362)
T ss_dssp GHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCC
T ss_pred cHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhcCCCCCC
Confidence 4556777777644200 11346 89999999999999999999999999999999999999999999999887
No 5
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.81 E-value=7.8e-20 Score=142.58 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=56.2
Q ss_pred HHHHHhcccCCCccCCCCCHHHHHHHHHhcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 5 HAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 5 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
.++.++..... .....++++++++|+.||+|||||+||+|++||+|+||++|||++++||..++|.|+
T Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT 153 (354)
T 2xtz_A 86 IGEKLSEIGGR-LDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPT 153 (354)
T ss_dssp HHHHHHHHHHH-CSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCC
T ss_pred HHHHHHhcccc-cccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCC
Confidence 44444443322 223479999999999999999999999999999999999999999999999888774
No 6
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.80 E-value=5.8e-20 Score=143.19 Aligned_cols=71 Identities=27% Similarity=0.521 Sum_probs=61.9
Q ss_pred cHHHHHHHhcccCCCccCCCCCHHHHHHHHHhcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 2 n~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
|+..++.++++... ..+..+++++++.|+.||+||+||+||.|++||+|+||++|||++++||..++|.|+
T Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~~Y~PT 169 (353)
T 1cip_A 99 RADDARQLFVLAGA-AEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPT 169 (353)
T ss_dssp HHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCC
T ss_pred hHHHHHHHHhhccc-cccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcCCCCCC
Confidence 45677777776443 223579999999999999999999999999999999999999999999999999885
No 7
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=26.88 E-value=91 Score=18.49 Aligned_cols=41 Identities=17% Similarity=0.451 Sum_probs=25.2
Q ss_pred chhHHHhhHHHHhhhhhccCCCCCceeeeeccccchhHHHHHHHHHHHHHHHhh
Q psy3657 54 SIQYFFDNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 107 (113)
Q Consensus 54 s~~YFld~l~ri~~~~y~p~~~~~ly~~~t~a~dt~~i~~~~~~V~~~i~~~~l 107 (113)
|.+||++|+..-.. -.+ .++.| .++.....+|..+|+.+-|
T Consensus 6 svpyfi~N~k~hi~--mn~-~edKI----------hAmNaYYrsVvstlvqDql 46 (80)
T 2gsv_A 6 SVPYFIENLKQHIE--MNQ-SEDKI----------HAMNSYYRSVVSTLVQDQL 46 (80)
T ss_dssp CHHHHHHHHHHHHH--HCS-SSCHH----------HHHHHHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHH--hCc-cHhHH----------HHHHHHHHHHHHHHHHHHH
Confidence 78999999876532 123 33333 4566677777777765433
No 8
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=17.20 E-value=1.4e+02 Score=22.58 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=30.5
Q ss_pred hhccCCCCCceeeeeccccchhHHHHHHHHHHHHHHHhhhhhcC
Q psy3657 69 AVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112 (113)
Q Consensus 69 ~y~p~~~~~ly~~~t~a~dt~~i~~~~~~V~~~i~~~~l~~~~~ 112 (113)
.|.+.+...++||.=.+-+.+.|..++...-+...+.+|++.++
T Consensus 129 ~~~~~~~~~~~ChvF~s~~a~~i~~ti~qaf~~~y~~~l~~~gi 172 (388)
T 3suz_A 129 AQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGI 172 (388)
T ss_dssp ---CCCCEEEEEEEEECTTHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccccccceEEEEecccCHHHHHHHHHHHHHHHhhhhccccCc
Confidence 34455566678984444558888888888888888888886553
No 9
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=16.04 E-value=86 Score=17.52 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=9.1
Q ss_pred HHHHhcCCHHHHHHH
Q psy3657 29 ELKSLWDDVAIRQAF 43 (113)
Q Consensus 29 ~i~~LW~D~~iq~~~ 43 (113)
.+.++++||.++..+
T Consensus 4 ~~~kl~~dPe~~~~m 18 (62)
T 2lnm_A 4 VISKIMENPDVAMAF 18 (62)
T ss_dssp HHHHHTTSHHHHHHT
T ss_pred HHHHHHcChHHHHHc
Confidence 355666666665555
No 10
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=15.64 E-value=1.5e+02 Score=22.02 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHhhccccccccchhHHHhhHHHHhhhhhccC
Q psy3657 33 LWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRD 73 (113)
Q Consensus 33 LW~D~~iq~~~~r~~ef~l~Ds~~YFld~l~ri~~~~y~p~ 73 (113)
.=+++++..++..+.+ ++..+||..++.. .|++.|+
T Consensus 47 ~a~n~~l~~al~~~d~----~~Ld~ff~sid~~-~p~~~pD 82 (270)
T 3c38_A 47 TAKNASLINALVSRDS----SRLDEFFSSVDEL-ELSNAPD 82 (270)
T ss_dssp HTTCHHHHHHHHTTCT----TTHHHHHHHHHHT-TGGGCCS
T ss_pred ccCCHHHHHHHHccCH----HHHHHHHhhcccc-CccCCCc
Confidence 4578888899986665 5788999999998 4555554
Done!