RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3657
(113 letters)
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 67.4 bits (164), Expect = 9e-15
Identities = 26/43 (60%), Positives = 37/43 (86%)
Query: 71 KRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 113
+ +++PL+HHFTTA++TENI++VF VK+TILH NL+ LMLQ
Sbjct: 320 RDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 362
Score = 50.5 bits (120), Expect = 9e-09
Identities = 20/50 (40%), Positives = 38/50 (76%)
Query: 18 IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+++R+F Y+ +++LW+D I+ A++RR E+QLG+S++YF DN D++
Sbjct: 122 VETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGV 171
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 66.6 bits (162), Expect = 2e-14
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 68 RAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+ D K ++ HFT A DTENI+ VF AVK+TIL NL++ L
Sbjct: 282 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 326
Score = 48.9 bits (116), Expect = 3e-08
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 19 DSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
S + YVD +KSLW+D I++ ++RR EYQL DS +Y+ ++ DR++
Sbjct: 89 VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD 137
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 63.7 bits (154), Expect = 2e-13
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 53 DSIQYFFDNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 112
+ + D + RIS D + + HFT AVDTENI+ VFN ++ I +LR L
Sbjct: 336 RAKYFIRDEFLRISTA--SGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393
Score = 49.8 bits (118), Expect = 2e-08
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 1 MNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFD 60
N + I N D + + K+LW+D +R +ER +EYQL D QYF D
Sbjct: 123 ENQFRVDYILSVMNVP--DFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLD 180
Query: 61 NWDRISR 67
D I +
Sbjct: 181 KIDVIKQ 187
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 61.3 bits (148), Expect = 1e-12
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 53 DSIQYFFDNWDRISRRAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM 111
+ ++ ++ + + D + + TTA+D + +K F V T+ RNL +
Sbjct: 293 HAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAG 352
Query: 112 L 112
L
Sbjct: 353 L 353
Score = 47.0 bits (111), Expect = 1e-07
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 1 MNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFD 60
+I + RL + +++LW D AI++ R +E Q+ D +Y +
Sbjct: 81 SESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLME 140
Query: 61 NWDRISR 67
N R+S
Sbjct: 141 NLKRLSD 147
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 59.0 bits (142), Expect = 9e-12
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 22 LFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRDEKKPLFHH 81
LF D + + + + + + KR + K ++ H
Sbjct: 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC---QFEDLNKRKDTKEIYTH 321
Query: 82 FTTAVDTENIKIVFNAVKNTILHRNLRD 109
FT A DT+N++ VF+AV + I+ NL+D
Sbjct: 322 FTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Score = 50.9 bits (121), Expect = 6e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 14 NNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
+ + + +K LW D ++ F R EYQL DS Y+ ++ DRI++
Sbjct: 110 AGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.068
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 29/89 (32%)
Query: 19 DSRLFS---------TYVDELKSLWDD----VA--IRQAFERRSEY--QLGDSIQYF--- 58
+++L + Y +EL+ L+ V I+ + E SE D+ + F
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 59 FD--NWDRISRRAVKRDEKKPLFHHFTTA 85
+ W ++ P + +
Sbjct: 213 LNILEW-------LENPSNTPDKDYLLSI 234
Score = 27.7 bits (61), Expect = 1.1
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 26/69 (37%)
Query: 66 SRRAVKRDEKKP------L-----FH--HFTTAV-----DTENIKIVFNA------VKNT 101
SR + E+K L FH A D + FNA V +T
Sbjct: 405 SR--IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 102 ILHRNLRDL 110
+LR L
Sbjct: 463 FDGSDLRVL 471
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.6
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 61/160 (38%)
Query: 1 MNAIHAEKIFQFDNNTCID-SRLFSTYVDELKSLWDDV---------------AIRQAFE 44
M+ I E S + Y+++ L++D +RQA
Sbjct: 95 MSPIKTE---------QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 45 --RRSEY-----QLG-------------DSIQYFFDN---WDRISRRAVKRDEKKP---L 78
R ++ LG +Q D W + + L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 79 FHH----FTTAVD-TENIKIVFNAVKNTILHRNLRDLMLQ 113
+ +T+ D + NIK+ ++++ LR L+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKS 240
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 25.6 bits (57), Expect = 3.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 99 KNTILHRNLRDLMLQ 113
T HR ++D M+Q
Sbjct: 49 NGTKFHRIIKDFMIQ 63
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 25.4 bits (56), Expect = 3.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 99 KNTILHRNLRDLMLQ 113
T HR ++D M+Q
Sbjct: 49 NGTKFHRIIKDFMIQ 63
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 25.2 bits (56), Expect = 3.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 99 KNTILHRNLRDLMLQ 113
N I HR ++ M+Q
Sbjct: 43 NNCIFHRVIKHFMVQ 57
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 25.9 bits (57), Expect = 4.0
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 18 IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQL------GDSIQYFFDNWDRISRRAVK 71
+DS Y L++++D A+++ + ++ G Y +I +
Sbjct: 188 VDSV--EAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPY----VKKILCEELG 241
Query: 72 RDE 74
Sbjct: 242 APA 244
>1hwm_A Ebulin, ebulin A chain; ribosome-inactivating protein, ricin-like,
hydrolase; HET: NAG BMA MAN GAL; 2.80A {Sambucus ebulus}
SCOP: d.165.1.1 PDB: 1hwn_A* 1hwo_A* 1hwp_A*
Length = 254
Score = 25.4 bits (55), Expect = 4.1
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 39 IRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 98
+R++ ++ + + + +NW +S V+ F+ V +N V
Sbjct: 174 VRRSLQQLTSFTPNALMLSMENNWSSMS-LEVQLSGDNVS--PFSGTVQLQNYDHTPRLV 230
Query: 99 KN 100
N
Sbjct: 231 DN 232
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 25.3 bits (56), Expect = 4.8
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 99 KNTILHRNLRDLMLQ 113
HR ++ M+Q
Sbjct: 59 NGHTFHRIIKGFMIQ 73
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 25.0 bits (55), Expect = 5.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 99 KNTILHRNLRDLMLQ 113
NTI HR + + ++Q
Sbjct: 76 DNTIFHRVIPNFVIQ 90
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 25.0 bits (55), Expect = 5.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 99 KNTILHRNLRDLMLQ 113
+TI HR +R+ M+Q
Sbjct: 44 DDTIFHRCIRNFMIQ 58
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 24.8 bits (55), Expect = 6.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 63 DRISRRAVKRDE------KKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 108
D R +K ++ + HF +A +++ + F V IL L
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 25.0 bits (55), Expect = 6.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 100 NTILHRNLRDLMLQ 113
TI HR++R+ ++Q
Sbjct: 58 GTIFHRSIRNFVIQ 71
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 24.5 bits (54), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 100 NTILHRNLRDLMLQ 113
I HRN++ M+Q
Sbjct: 39 GCIFHRNIKGFMVQ 52
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 24.6 bits (54), Expect = 8.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 99 KNTILHRNLRDLMLQ 113
KNTI H+N++ ++Q
Sbjct: 54 KNTIFHKNIKGFIIQ 68
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 24.5 bits (54), Expect = 8.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 100 NTILHRNLRDLMLQ 113
NTI HR + ++Q
Sbjct: 63 NTIFHRVVPGFIVQ 76
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A
{Geobacillus stearothermophilus}
Length = 164
Score = 24.4 bits (54), Expect = 9.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 59 FDNWDRISRRAVKRDEKKPLFHHFTT 84
D W+ +S +DEK P H F
Sbjct: 132 DDEWEIVSYTPGGKDEKNPYEHAFII 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,787,958
Number of extensions: 93493
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 64
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)