RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3657
(113 letters)
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 60.2 bits (145), Expect = 7e-13
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 53 DSIQYFFDNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 109
+ + D + RIS D + + HFT AVDTENI+ VFN ++ I +LR
Sbjct: 166 RAKYFIRDEFLRISTA--SGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 220
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 55.7 bits (134), Expect = 7e-12
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 1 MNAIHAEKIFQFDNNTC------IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDS 54
N +H +K+ FD +++R+F Y+ +++LW+D I+ A++RR E+QLG+S
Sbjct: 39 KNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGES 98
Query: 55 IQYFFDNWDRISR 67
++YF DN D++
Sbjct: 99 VKYFLDNLDKLGV 111
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 56.4 bits (135), Expect = 1e-11
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 EKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAF-ERRSEYQLGDSIQYFFDNWDRI 65
E I + + LF D L+ V+I+ F E + +Q F R
Sbjct: 101 ETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG 160
Query: 66 SRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 108
RR +++PL+HHFTTA++TENI++VF VK+TILH NL+
Sbjct: 161 KRR---DQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 53.3 bits (128), Expect = 4e-11
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
N + I N D + + K+LW+D +R +ER +EYQL D QYF D
Sbjct: 37 NQFRVDYILSVMNVP--DFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDK 94
Query: 62 WDRISR 67
D I +
Sbjct: 95 IDVIKQ 100
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 53.0 bits (127), Expect = 7e-11
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 2 NAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFF 59
N H + F+N ++ F YV L +LW D IR+AF RRSE+QLG+S++YF
Sbjct: 40 NEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFL 99
Query: 60 DNWDRISR 67
DN DRI +
Sbjct: 100 DNLDRIGQ 107
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 52.6 bits (126), Expect = 8e-11
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 5 HAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDR 64
A K+ + + + D ++ LW D I+ F+R SEYQL DS Y+ + +R
Sbjct: 43 DARKLMHMADTI-EEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLER 101
Query: 65 ISR 67
+
Sbjct: 102 LVT 104
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 52.2 bits (125), Expect = 1e-10
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
A A ++F + + + +K LW D ++ F R EYQL DS Y+ ++
Sbjct: 40 RADDARQLFVLAGAA-EEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLND 98
Query: 62 WDRISR 67
DRI++
Sbjct: 99 LDRIAQ 104
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 53.4 bits (127), Expect = 2e-10
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 7 EKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRIS 66
I + LF D L+ + F Q F +
Sbjct: 102 RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVD 161
Query: 67 RRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 108
+ D K ++ HFT A DTENI+ VF AVK+TIL NL+
Sbjct: 162 ---LNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 51.9 bits (123), Expect = 6e-10
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 67 RRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 106
KR + K ++ HFT A DT+N++ VF+AV + I+ N
Sbjct: 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 50.3 bits (120), Expect = 7e-10
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 2 NAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDN 61
N HA+ + + D S + YVD +KSLW+D I++ ++RR EYQL DS +Y+ ++
Sbjct: 40 NKAHAQLVREVDVEK--VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 97
Query: 62 WDRISR 67
DR++
Sbjct: 98 LDRVAD 103
>d1llna_ d.165.1.1 (A:) Antiviral protein 3 {Pokeweed (Phytolacca
americana) [TaxId: 3527]}
Length = 262
Score = 23.8 bits (51), Expect = 6.9
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 38 AIRQAFERRSEYQLGDSIQYFFDNWDRISR 67
++ F+ + YQ NWD +S+
Sbjct: 182 KVKAKFDDANGYQPDPKAISLEKNWDSVSK 211
>d1hwma_ d.165.1.1 (A:) Ebulin A-chain {Sambucus ebulus [TaxId:
28503]}
Length = 251
Score = 23.4 bits (50), Expect = 7.4
Identities = 5/60 (8%), Positives = 21/60 (35%)
Query: 39 IRQAFERRSEYQLGDSIQYFFDNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAV 98
+R++ ++ + + + +NW +S + F + ++ + +
Sbjct: 174 VRRSLQQLTSFTPNALMLSMENNWSSMSLEVQLSGDNVSPFSGTVQLQNYDHTPRLVDNF 233
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 23.5 bits (49), Expect = 7.4
Identities = 6/49 (12%), Positives = 13/49 (26%)
Query: 58 FFDNWDRISRRAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 106
+ T+A + N+ F + + L +N
Sbjct: 126 ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 174
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding
protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 22.9 bits (49), Expect = 9.3
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 84 TAVDTENIKIVFNAVKNT 101
T D +I+F+ ++
Sbjct: 6 TVYDQHGFRILFHFARDP 23
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 120
Score = 22.8 bits (49), Expect = 9.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 84 TAVDTENIKIVFNAVKN 100
TA +KI F ++
Sbjct: 6 TAYSKNGLKIEFTFERS 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,633
Number of extensions: 18425
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 26
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)