RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3658
(74 letters)
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 83.8 bits (208), Expect = 6e-21
Identities = 27/36 (75%), Positives = 33/36 (91%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
P + ++E WNPLGVVG+I+AFNFPVAV+GWNAAIAL
Sbjct: 122 PGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIAL 157
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 78.4 bits (194), Expect = 5e-19
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
P + L+E WNPLGVVG+I+AFNFPVAV GWNAAIAL
Sbjct: 123 PGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIAL 158
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 67.6 bits (165), Expect = 3e-15
Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
PN++++E WNPLG+VG+I+AFNFP AV GWNA IAL
Sbjct: 144 PNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIAL 179
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 50.3 bits (121), Expect = 5e-09
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 8 SAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+A K P P PLGVVG+I+ +NFP+ + W A AL
Sbjct: 65 AAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPAL 117
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 48.4 bits (116), Expect = 2e-08
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A ++ E+ P P + + PLGVVG I+ +NFP+ + W A AL
Sbjct: 70 AGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPAL 121
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 44.8 bits (107), Expect = 3e-07
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 14 KELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
++L TL P + PLGVVG I+ +NFP+ + W A AL
Sbjct: 105 RKLEGETLPSDPGVLAYTRREPLGVVGAITPWNFPLLLAAWKIAPAL 151
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 43.0 bits (102), Expect = 2e-06
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 34 NPLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVVG+I+ +NFP+A+ W A AL
Sbjct: 134 EPLGVVGLITPWNFPIAIPAWKIAPAL 160
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 41.1 bits (97), Expect = 8e-06
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 14 KELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPG 62
+ L T+ L PLGVVG I+ +NFP+A+ W A AL
Sbjct: 112 RRLEGETIPTDKGSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAA 160
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 39.3 bits (92), Expect = 3e-05
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVV +I+ +NFPVA+ W AL
Sbjct: 135 PIGVVALITPWNFPVAIPSWKIFPAL 160
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 39.0 bits (92), Expect = 4e-05
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVV I+ FNFP + W +A+
Sbjct: 136 PLGVVAGITPFNFPAMIPLWMFPMAI 161
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 36.3 bits (85), Expect = 3e-04
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVVGII +N+P+
Sbjct: 101 PLGVVGIIVPWNYPL 115
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVVG+IS FNFP+
Sbjct: 98 PLGVVGVISPFNFPL 112
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 35 PLGVVGIISAFNFP 48
PLGVVG+IS +NFP
Sbjct: 130 PLGVVGVISPWNFP 143
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 33.8 bits (78), Expect = 0.003
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGV I A+N+P+ + W +A AL
Sbjct: 116 PLGVCAGIGAWNYPIQIASWKSAPAL 141
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 20 TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ + P+GV G+I+ +N P+ + W A AL
Sbjct: 102 SYPQDGGALNYVLRQPVGVAGLITPWNLPLMLLTWKIAPAL 142
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 33.5 bits (77), Expect = 0.003
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 34 NPLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVVG+IS +N P+ + W AL
Sbjct: 138 KPLGVVGVISPWNLPLLLMTWKVGPAL 164
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 33.4 bits (77), Expect = 0.004
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVVG+IS FNFP+
Sbjct: 110 PLGVVGVISPFNFPL 124
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 33.0 bits (76), Expect = 0.006
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
Y E P+GV G I +NFP+ + W A AL
Sbjct: 135 AYTRRE---PIGVCGQIIPWNFPLLMLAWKLAPAL 166
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV II +N+P+
Sbjct: 100 PLGVVLIIGPWNYPL 114
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 33.0 bits (76), Expect = 0.007
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P GVVG+IS +N+P+ + AL
Sbjct: 119 PYGVVGVISPWNYPLLTPMGDIIPAL 144
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 32.8 bits (75), Expect = 0.008
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 19 ITLDPPP-NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
I + P NY + E P+GVVG I +NFP+ W A AL
Sbjct: 103 IPVRGPFLNYTVRE---PVGVVGAIVPWNFPLMFAAWKVAPAL 142
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 32.7 bits (75), Expect = 0.008
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 31 ENWNPLGVVGIISAFNFPVA 50
N P GVVG+IS +N+P+
Sbjct: 114 VNRRPKGVVGVISPWNYPLT 133
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 32.6 bits (75), Expect = 0.008
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV II +N+PV
Sbjct: 108 PLGVVLIIGPWNYPV 122
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 32.4 bits (74), Expect = 0.010
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 33 WNPLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVVG+I+ +N+P+ + W A AL
Sbjct: 149 KEPLGVVGLITPWNYPLLMATWKVAPAL 176
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 32.2 bits (74), Expect = 0.012
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A+RI+ E+ I D P + + P+GVV I +NFP + A AL
Sbjct: 110 ARRIEGEI--IPSDRPNENIFIFK-VPIGVVAGILPWNFPFFLIARKLAPAL 158
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 32.0 bits (73), Expect = 0.012
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P GV G I +N+P+A+ W A AL
Sbjct: 144 PYGVCGQIIPWNYPLAMAAWKLAPAL 169
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 32.0 bits (73), Expect = 0.012
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 30 LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
L W P+GVVG I +NFP+ + W AL
Sbjct: 142 LAGWKPVGVVGQIVPWNFPLLMLAWKICPAL 172
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 31.9 bits (73), Expect = 0.014
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+Y E PLGVVG I +NFP+ + W A AL
Sbjct: 130 SYHFHE---PLGVVGQIIPWNFPLLMAAWKLAPAL 161
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 31.8 bits (73), Expect = 0.014
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 33 WNPLGVVGIISAFNFPVAV 51
+ PLGV +IS +NFP+A+
Sbjct: 164 YRPLGVGAVISPWNFPLAI 182
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 31.8 bits (73), Expect = 0.015
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 31 ENWNPLGVVGIISAFNFPVA 50
E P GVVG+IS +N+P+
Sbjct: 150 ELRQPKGVVGVISPWNYPLT 169
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 31.4 bits (72), Expect = 0.021
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 19 ITLDPPP--NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
I +D N+ E PLGVV I+ +N P+ + A AL
Sbjct: 104 IPVDKGDYLNFTRRE---PLGVVAAITPWNSPLLLLAKKLAPAL 144
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 31.3 bits (71), Expect = 0.021
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVVG I +NFP+ ++ W AL
Sbjct: 141 PIGVVGQIIPWNFPLLMFAWKVGPAL 166
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 31.3 bits (71), Expect = 0.022
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVVG I +NFP+ + W A AL
Sbjct: 136 PLGVVGQIIPWNFPLLMATWKLAPAL 161
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 30.9 bits (70), Expect = 0.030
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GV G I +NFP+ ++ W AL
Sbjct: 195 PIGVAGQIIPWNFPLLMFAWKVGPAL 220
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 31.2 bits (71), Expect = 0.030
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVVG+I+ +NFP+ + W A AL
Sbjct: 120 PVGVVGLITPWNFPLLMAAWKVAPAL 145
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 30.9 bits (70), Expect = 0.031
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGV I A+N+P+ + W A AL
Sbjct: 133 PLGVCVGIGAWNYPLQIASWKIAPAL 158
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 30.7 bits (70), Expect = 0.039
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 32 NWNPLGVVGIISAFNFPVAV 51
PLGVV II A+N+P+ +
Sbjct: 97 YKEPLGVVLIIGAWNYPLQL 116
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 30.6 bits (70), Expect = 0.039
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGV I A+N+P+ + W +A AL
Sbjct: 142 PLGVCAGIGAWNYPIQIACWKSAPAL 167
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 30.5 bits (69), Expect = 0.048
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVVG I +NFP + W A AL
Sbjct: 136 PIGVVGQIIPWNFPFLMAAWKLAPAL 161
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 30.2 bits (68), Expect = 0.054
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 25 PNYVL-LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
PN L L P+GV GI+ +N+P+ + W A L
Sbjct: 136 PNRNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAACL 172
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 30.1 bits (69), Expect = 0.062
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA 50
A+RI P P +L P+GVV I+ +NFP A
Sbjct: 94 ARRIY---GRTIPSPAPGKRILVIKQPVGVVAAITPWNFPAA 132
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 29.9 bits (68), Expect = 0.066
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 35 PLGVVGIISAFNFPVAVY 52
PLGV +IS +NFP A+
Sbjct: 171 PLGVGVVISPWNFPFAIM 188
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
domain. This is part of the ubiquitin-mediated protein
degradation pathway in which a thiol-ester linkage
forms between a conserved cysteine and the C-terminus
of ubiquitin and complexes with ubiquitin protein
ligase enzymes, E3. This pathway regulates many
fundamental cellular processes. There are also other
E2s which form thiol-ester linkages without the use of
E3s as well as several UBC homologs (TSG101, Mms2,
Croc-1 and similar proteins) which lack the active site
cysteine essential for ubiquitination and appear to
function in DNA repair pathways which were omitted from
the scope of this CD.
Length = 141
Score = 29.9 bits (68), Expect = 0.067
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 10 KRIQKELAEITLDPPPNYV 28
KR+QKEL ++ DPP
Sbjct: 2 KRLQKELKDLKKDPPSGIS 20
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 29.8 bits (68), Expect = 0.067
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVV I +NFP+ + W A AL
Sbjct: 114 PLGVVAAIVPWNFPLLLAAWKIAPAL 139
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 29.9 bits (68), Expect = 0.081
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 14 KELAEITLDPPPN---YVLLENWNPLGVVGIISAFNFP--VAVYGWNAAIA 59
+ LA+I + Y+ E PLGVV II+ +N+P AV NA I
Sbjct: 95 EALADIRVPEKDGFERYIRRE---PLGVVLIIAPWNYPYLTAV---NAVIP 139
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 29.5 bits (67), Expect = 0.100
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVV I+ +NFP + A AL
Sbjct: 123 PVGVVAAITPWNFPFFLNLAKLAPAL 148
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 29.6 bits (67), Expect = 0.10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GV G I +NFP+ + W A AL
Sbjct: 145 PVGVCGQIIPWNFPLLMAAWKLAPAL 170
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 29.6 bits (67), Expect = 0.11
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLG V IS +NFP+A++ A AL
Sbjct: 768 PLGPVVCISPWNFPLAIFTGQVAAAL 793
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 29.1 bits (65), Expect = 0.14
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 35 PLGVVGIISAFNFPVAVYG 53
LG +IS +NFPVA++
Sbjct: 154 GLGAGVVISPWNFPVAIFT 172
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 29.2 bits (66), Expect = 0.14
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV +I A+N+P+
Sbjct: 109 PLGVVLVIGAWNYPL 123
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 29.2 bits (66), Expect = 0.14
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVVG I+ FNFP ++ A A+
Sbjct: 123 PIGVVGAITPFNFPANLFAHKIAPAI 148
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 29.1 bits (66), Expect = 0.15
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGVVG + +NFP+ + W A AL
Sbjct: 124 PLGVVGAVVPWNFPLLMAAWKIAPAL 149
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 28.8 bits (65), Expect = 0.16
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV I+ FN+P+
Sbjct: 119 PLGVVAGITPFNYPL 133
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 29.0 bits (65), Expect = 0.16
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
Y L E P+GVVG I +NFP ++ A AL
Sbjct: 153 YTLKE---PIGVVGHIIPWNFPSTMFFMKVAPAL 183
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 28.7 bits (65), Expect = 0.17
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 9 AKRIQKELAEITLDPPPN------YVLLENWNPLGVVGIISAFNFPV 49
AKR+ E I D P + + E P+GVV I+ FNFP+
Sbjct: 96 AKRLAGET--IPFDASPGGEGRIGFTIRE---PIGVVAAITPFNFPL 137
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 28.6 bits (64), Expect = 0.18
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GV G I +NFP+ + W A AL
Sbjct: 144 PIGVCGQIIPWNFPLLMCAWKIAPAL 169
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 28.7 bits (65), Expect = 0.21
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 13/37 (35%)
Query: 34 NPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 70
PLG V IS +NFP+A++ GQ+A
Sbjct: 675 KPLGPVVCISPWNFPLAIF-------------TGQIA 698
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 28.4 bits (63), Expect = 0.22
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 34 NPLGVVGIISAFNFPVAVYGWNAAIAL 60
+PLGVV I+ +N+P+ + W A AL
Sbjct: 136 DPLGVVASIAPWNYPLMMAAWKLAPAL 162
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 28.5 bits (64), Expect = 0.23
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 35 PLGVVGIISAFNFP 48
P+GVVGII+ +NFP
Sbjct: 119 PIGVVGIITPWNFP 132
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 28.6 bits (64), Expect = 0.26
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 35 PLGVVGIISAFNFP 48
P+GVV I+ FNFP
Sbjct: 123 PVGVVLAITPFNFP 136
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 28.5 bits (64), Expect = 0.26
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 35 PLGVVGIISAFNFP 48
PLGVV +ISA+NFP
Sbjct: 101 PLGVVLVISAWNFP 114
>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 153
Score = 28.0 bits (63), Expect = 0.31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 6 STSAKRIQKELAEITLDPPP 25
++ KR+ KEL ++ DPPP
Sbjct: 4 PSALKRLLKELKKLQKDPPP 23
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 28.1 bits (63), Expect = 0.35
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVVG I+ +NFP+A+ AL
Sbjct: 160 PVGVVGAITPWNFPLAMITRKVGPAL 185
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 28.2 bits (63), Expect = 0.36
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GV I+ +NFP A+ A AL
Sbjct: 117 PVGVCAAITPWNFPAAMITRKAGAAL 142
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 27.8 bits (62), Expect = 0.38
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+G VG+I+ +N P + W A AL
Sbjct: 135 PVGPVGLITPWNAPFMLSTWKIAPAL 160
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 27.9 bits (62), Expect = 0.41
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGV I+ FNFP + W IA+
Sbjct: 136 PLGVCAGITPFNFPAMIPLWMFPIAI 161
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 27.5 bits (62), Expect = 0.45
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVY 52
A + ++ ++ L P + + GV IS +NFP+A++
Sbjct: 141 AAQARELFSDPELPGPTGELNGLELHGRGVFVCISPWNFPLAIF 184
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 27.5 bits (62), Expect = 0.50
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 35 PLGVVGIISAFNFPV 49
P GVV II+ +N+P
Sbjct: 100 PYGVVLIIAPWNYPF 114
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 27.7 bits (62), Expect = 0.52
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GV G+I+ +N+P+ W A AL
Sbjct: 134 PVGVCGLITPWNYPLLQAAWKLAPAL 159
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 27.6 bits (61), Expect = 0.59
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P G V +I AFNFP+ + A AL
Sbjct: 100 PYGPVLVIGAFNFPLWIPLLQLAGAL 125
>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional.
Length = 147
Score = 27.0 bits (59), Expect = 0.69
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 8 SAKRIQKELAEITLDPPPN 26
+ KRIQKE ++ DPP N
Sbjct: 2 ATKRIQKEHKDLLKDPPSN 20
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 27.2 bits (61), Expect = 0.75
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 35 PLGVVGIISAFNFP 48
P+G V I+ FNFP
Sbjct: 123 PIGPVSAITPFNFP 136
>gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.
Length = 159
Score = 26.6 bits (59), Expect = 0.90
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1 MSKALSTSAKRIQKELAE 18
++++L A RI+ ELAE
Sbjct: 27 IARSLDARADRIKNELAE 44
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic
domain homologues. Proteins destined for
proteasome-mediated degradation may be ubiquitinated.
Ubiquitination follows conjugation of ubiquitin to a
conserved cysteine residue of UBC homologues. This
pathway functions in regulating many fundamental
processes required for cell viability.TSG101 is one of
several UBC homologues that lacks this active site
cysteine.
Length = 145
Score = 26.5 bits (59), Expect = 0.96
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 11 RIQKELAEITLDPPPNYV 28
R+ KEL E+ DPPP +
Sbjct: 1 RLLKELKELRKDPPPGFT 18
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 26.9 bits (60), Expect = 1.00
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 35 PLGVVGIISAFNFP 48
P GV+ + FNFP
Sbjct: 97 PHGVMAVFGPFNFP 110
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins
destined for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues
that lacks this active site cysteine.
Length = 139
Score = 26.4 bits (59), Expect = 1.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 11 RIQKELAEITLDPPPN-YVLLENWN 34
R+QKEL E+ DPPP + N
Sbjct: 1 RLQKELKELLKDPPPGISAFPVDDN 25
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 26.5 bits (59), Expect = 1.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 36 LGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 73
L VV + F FPVA YG IAL W + +LVG
Sbjct: 110 LRVVAPEAYFQFPVAKYG----IALDNWTIRRLSSLVG 143
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 26.6 bits (59), Expect = 1.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 35 PLGVVGIISAFNFPV 49
P+GVV ISAFN P+
Sbjct: 124 PIGVVVAISAFNHPL 138
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 26.6 bits (59), Expect = 1.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV I S++NFP+
Sbjct: 108 PLGVVLIFSSWNFPI 122
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 26.5 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVV I+ +N+P+ + W A AL
Sbjct: 118 PIGVVAQIAPWNYPLMMAAWKIAPAL 143
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 26.6 bits (59), Expect = 1.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLG V IS +NFP+A++ A AL
Sbjct: 236 PLGPVVCISPWNFPLAIFTGQIAAAL 261
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 26.4 bits (59), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
P Y + P GV G I +N+P+ + G + A AL
Sbjct: 107 PGYFVYTVREPHGVTGHIIPWNYPLQITGRSVAPAL 142
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 26.4 bits (59), Expect = 1.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV I FN+P+
Sbjct: 141 PLGVVLAIGPFNYPL 155
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 26.3 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVV I +NF V + W AL
Sbjct: 142 PVGVVAGIVPWNFSVMIAVWKIGAAL 167
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 26.0 bits (57), Expect = 1.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
GV IS +NFP+A++ + AL
Sbjct: 160 SRGVFVCISPWNFPLAIFTGQISAAL 185
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 26.2 bits (58), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 35 PLGVVGIISAFNFPVA 50
P+GV GII +N PV
Sbjct: 117 PMGVAGIIVPWNSPVV 132
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 26.0 bits (57), Expect = 1.8
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
++A+ A+ I K E+ ++ P+GV+ I +NFP+ + W AL
Sbjct: 125 ARAIRWYAEAIDKVYGEVATTSSHELAMIVR-EPVGVIAAIVPWNFPLLLTCWKLGPAL 182
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 25.8 bits (57), Expect = 1.9
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPV 49
+Y L E P GVV I AFN P+
Sbjct: 110 HYTLRE---PYGVVARIVAFNHPL 130
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 25.8 bits (57), Expect = 2.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 33 WNPLGVVGIISAFNFPV 49
PLGVV I+ FN P+
Sbjct: 118 REPLGVVLAITPFNHPL 134
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 25.8 bits (57), Expect = 2.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 15 ELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
EL TL P+ + PLGVVG I +N P+ + A AL
Sbjct: 97 ELKGETLPFGPDVLTYTVREPLGVVGAILPWNAPLMLAALKIAPAL 142
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 25.5 bits (56), Expect = 2.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV I FN+PV
Sbjct: 158 PLGVVLAIPPFNYPV 172
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 25.8 bits (56), Expect = 2.5
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 35 PLGVVGIISAFNFP 48
PLGVV +ISA+N+P
Sbjct: 112 PLGVVLVISAWNYP 125
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 25.3 bits (56), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 32 NWNPLGVVGIISAFNFP 48
+ PLGVVG I ++N+P
Sbjct: 117 EYEPLGVVGAIVSWNYP 133
>gnl|CDD|216371 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family.
Length = 429
Score = 25.1 bits (55), Expect = 3.4
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 24 PPNYVLLENWNPLGVVGIISAFNFPVAVYGW 54
L +N+ + I+ +F + +Y
Sbjct: 130 FELTYLYDNFVQIMSSAILFSFALAIYLYVR 160
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 25.1 bits (55), Expect = 3.7
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIALPGWQVLG 67
P G V II+ FNFP + +P Q++G
Sbjct: 142 PYGPVAIITPFNFP---------LEIPALQLMG 165
>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional.
Length = 152
Score = 24.8 bits (54), Expect = 3.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 10 KRIQKELAEITLDPPP 25
KRI+KE + DPPP
Sbjct: 5 KRIEKETQNLANDPPP 20
>gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Chloroflexi, Dictyoglomi, and Fusobacteria. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 403
Score = 24.9 bits (55), Expect = 3.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 24 PPNYVLLENWNPLGVV------GIISAFNFPVA 50
P Y++ E W+ + G+ SAFNF +A
Sbjct: 218 PDAYLVGEVWDDPSTIAPYYASGLDSAFNFDLA 250
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 24.9 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVV I+ +N+P+ + W A AL
Sbjct: 138 PVGVVASIAPWNYPLMMAAWKLAPAL 163
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 24.7 bits (53), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGV I FNFP + W +A+
Sbjct: 249 PLGVCAGICPFNFPAMIPLWMFPVAV 274
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 24.8 bits (55), Expect = 4.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVV I +N P+ + A AL
Sbjct: 137 PVGVVAAIVPWNAPLFLAALKIAPAL 162
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 24.4 bits (54), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 35 PLGVVGIISAFNFPVA 50
PLG V + A NFP+A
Sbjct: 105 PLGPVAVFGASNFPLA 120
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 24.4 bits (53), Expect = 7.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P GV +IS +NFP A+ +
Sbjct: 167 PTGVTVVISPWNFPFAIMVGMTVAPI 192
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 24.3 bits (54), Expect = 7.2
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 35 PLGVVGII 42
PLGV+G+I
Sbjct: 115 PLGVIGVI 122
>gnl|CDD|182322 PRK10234, PRK10234, DNA-binding transcriptional activator GutM;
Provisional.
Length = 118
Score = 23.8 bits (52), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 49 VAVYGWNAAIALPGWQV---------LGQVALVGV 74
VAV W A +AL GWQ+ L Q VGV
Sbjct: 8 VAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGV 42
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 24.1 bits (52), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GV I+ +NFP A+ A AL
Sbjct: 146 PIGVTAAITPWNFPAAMITRKAGPAL 171
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 24.0 bits (53), Expect = 10.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 35 PLGVVGIISAFNFPV 49
P+GV G+I+ +N+P+
Sbjct: 130 PIGVCGLITPWNWPL 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,945,878
Number of extensions: 321638
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 119
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)