RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3658
(74 letters)
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 71.0 bits (175), Expect = 1e-16
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ L+E WNP+G+VGII+AFNFPVAVYGWN AIA+
Sbjct: 147 SGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM 182
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 43.1 bits (102), Expect = 9e-07
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A+ + + + P + + P GV +I+ +NFP+A+ A+ A+
Sbjct: 640 AREMIRLGQPQRVGHAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASAAI 691
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 41.8 bits (99), Expect = 3e-06
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 9 AKRIQKELAEITLDPPP---NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A+++ + + P N P+GV IS +NF +A+ A +
Sbjct: 146 ARQMIELNRGKEILSRPGEQNRYFYT---PMGVTVTISPWNFALAIMVGTAVAPI 197
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics
consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL
conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 40.1 bits (94), Expect = 9e-06
Identities = 30/62 (48%), Positives = 33/62 (53%), Gaps = 19/62 (30%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIA 59
SK LSTSAKRIQKELA+ITLDPPPN SA P +Y W + I
Sbjct: 43 SKLLSTSAKRIQKELADITLDPPPN---------------CSA--GPKGDNIYEWRSTIL 85
Query: 60 LP 61
P
Sbjct: 86 GP 87
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 40.1 bits (94), Expect = 9e-06
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 15/56 (26%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNA 56
+ LS + R++++L + L P ++ P + +
Sbjct: 23 IQPNLSAARIRLKRDLDSLDLPPTVT---------------LNVITSPDSADRSQS 63
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 40.3 bits (94), Expect = 1e-05
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 19/58 (32%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
+ + KRI KEL ++ DPP SA PV ++ W A I P
Sbjct: 2 AMALKRIHKELNDLARDPPAQ---------------CSA--GPVGDDMFHWQATIMGP 42
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 39.4 bits (92), Expect = 2e-05
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYV 28
+A +T+ +R++++ I DP P
Sbjct: 9 KRAPTTATQRLKQDYLRIKKDPVPYIC 35
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 39.5 bits (93), Expect = 2e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 19 ITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ + P P + PLG +I+ +NFPVA++ +
Sbjct: 157 VEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPV 198
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 39.1 bits (92), Expect = 3e-05
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 9 AKRIQKEL--AEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A R+ E + + L PLGVV IS FN+PV + A AL
Sbjct: 124 ALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAPAL 177
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo
sapiens} SCOP: d.20.1.1
Length = 136
Score = 38.5 bits (90), Expect = 3e-05
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 17/59 (28%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAI 58
++++ KR+QKEL + DPPP ++ V + W +
Sbjct: 17 RGSMASMQKRLQKELLALQNDPPPG---------------MTLNEKSVQNSITQWIVDM 60
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 38.8 bits (91), Expect = 3e-05
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 23 PPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 60
P P + LG V + A NFP+A G + A AL
Sbjct: 124 PLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASAL 163
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 38.2 bits (89), Expect = 4e-05
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 20/63 (31%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAAI 58
S + + ++++LAE+ +P SA + +Y W I
Sbjct: 12 SGLVPRGSLLLRRQLAELNKNPVEG---------------FSA--GLIDDNDLYRWEVLI 54
Query: 59 ALP 61
P
Sbjct: 55 IGP 57
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 38.7 bits (91), Expect = 4e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 9 AKRIQKEL--AEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
R++ E+ + + P+G+V IS FN+PV + G A AL
Sbjct: 115 GLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPAL 168
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 38.1 bits (89), Expect = 4e-05
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPN 26
++ +S K + KE+AE+ + P
Sbjct: 9 TRRVSVRDKLLVKEVAELEANLPCT 33
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 37.7 bits (88), Expect = 5e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 15/60 (25%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
L + RIQKEL +PP N + P + W
Sbjct: 15 KYNLGNANYRIQKELNNFLKNPPIN---------------CTIDVHPSNIRIWIVQYVGL 59
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 37.2 bits (87), Expect = 6e-05
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 19/60 (31%)
Query: 4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
+ + RIQKEL +PP N + + W
Sbjct: 3 NMGNANYRIQKELHNFLNNPPIN---------------CTL--DVHPNNIRIWIVKYVGL 45
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 37.9 bits (89), Expect = 7e-05
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
K + E+ P + ++ P+G+VG I+ FNFP+ + A A+
Sbjct: 109 VKEHRDEVI-----PSDDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPAI 155
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 37.2 bits (87), Expect = 8e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 19/62 (30%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIA 59
SK + +KR+Q+EL + + P I+A FP ++ W A +
Sbjct: 4 SKERHSVSKRLQQELRTLLMSGDPG---------------ITA--FPDGDNLFKWVATLD 46
Query: 60 LP 61
P
Sbjct: 47 GP 48
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 37.5 bits (87), Expect = 9e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 6 STSAKRIQKELAEITLDPPPN 26
S+ AKRI KE+ + DP +
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAH 21
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 37.3 bits (87), Expect = 1e-04
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 35 PLGVVGIISAFNFPV 49
P GV II FN+PV
Sbjct: 130 PYGVTYIIGPFNYPV 144
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 37.2 bits (87), Expect = 1e-04
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
R+ ++ N V GVVG+IS +NFP+ + + A AL
Sbjct: 125 PGRVHGRISPSNTPGKENRVYRV---AKGVVGVISPWNFPLNLSIRSVAPAL 173
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 36.9 bits (86), Expect = 1e-04
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 19/58 (32%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
S + KRI KEL ++ DPP SA PV ++ W A I P
Sbjct: 18 SMALKRIHKELNDLARDPPAQ---------------CSA--GPVGDDMFHWQATIMGP 58
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 36.9 bits (86), Expect = 1e-04
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+VL GV I+AFNFP AA AL
Sbjct: 145 QHVLSP---TRGVALFINAFNFPSWGLWEKAAPAL 176
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 36.8 bits (86), Expect = 1e-04
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 19 ITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
I L Y PLGV I A+N+P + W AA AL
Sbjct: 137 IPLGGDFAYTKRV---PLGVCVGIGAWNYPQQIACWKAAPAL 175
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 37.0 bits (86), Expect = 1e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 23 PPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 60
P P + P+G V + A NFP+A G + A AL
Sbjct: 157 PAPRQEIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAAL 196
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 36.8 bits (86), Expect = 1e-04
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 35 PLGVVGIISAFNFPV 49
PLGVV +I +N+P
Sbjct: 120 PLGVVLVIGTWNYPF 134
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 36.8 bits (86), Expect = 2e-04
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+GVVG I+ FNFP+ V W +A+
Sbjct: 141 PIGVVGGIAPFNFPMMVPCWMFPMAI 166
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 36.5 bits (85), Expect = 2e-04
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 20/64 (31%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAA 57
A KRI KEL +++ DPP N SA PV ++ W A
Sbjct: 14 RENLYFQGALKRINKELNDLSKDPPTN---------------CSA--GPVGDDMFHWQAT 56
Query: 58 IALP 61
I P
Sbjct: 57 IMGP 60
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 36.1 bits (84), Expect = 2e-04
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 20/59 (33%)
Query: 6 STSA-KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
S A KRIQKEL ++ DPP SA PV ++ W A I P
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQ---------------CSA--GPVGDDLFHWQATIMGP 43
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 36.1 bits (84), Expect = 2e-04
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 6 STSAKRIQKELAEITLDPPPN 26
++ R+ KEL ++ PPP
Sbjct: 3 HMASMRVVKELEDLQKKPPPY 23
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 36.1 bits (84), Expect = 2e-04
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
MS + + KR+ ++ + DPP IS + WNA I
Sbjct: 1 MS---TPARKRLMRDFKRLQQDPPAG---------------ISGAPQDNNIMLWNAVIFG 42
Query: 61 P 61
P
Sbjct: 43 P 43
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 36.2 bits (84), Expect = 3e-04
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 19/62 (30%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIA 59
A KR+Q+EL + + ISA FP + ++ W I
Sbjct: 25 GAARGPVGKRLQQELMTLMMSGDKG---------------ISA--FPESDNLFKWVGTIH 67
Query: 60 LP 61
Sbjct: 68 GA 69
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 35.7 bits (83), Expect = 3e-04
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 7 TSAKRIQKELAEITLDPPPN 26
+ AKRI KE+ + DP +
Sbjct: 1 SRAKRIMKEIQAVKDDPAAH 20
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 36.2 bits (84), Expect = 3e-04
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
++E PLGVV + P + + I++
Sbjct: 98 NEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISI 133
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 35.8 bits (83), Expect = 3e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGII 42
SK S + RIQK++ E+ L + + + L +I
Sbjct: 21 SKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI 61
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 35.7 bits (83), Expect = 3e-04
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 6 STSAKRIQKELAEITLDPPPN 26
++ KRI KE ++ DP P
Sbjct: 4 ASLPKRIIKETEKLVSDPVPG 24
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium,
SGC, ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 35.9 bits (83), Expect = 3e-04
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN 26
+ S R+QKEL +I +
Sbjct: 17 LYFQGSKELLRLQKELKDIENENVQE 42
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 35.9 bits (83), Expect = 4e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 18 EITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
E + P GV IS +NFP+A++ AL
Sbjct: 632 ETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAAL 674
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 35.7 bits (83), Expect = 4e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P+G+ I+ FNFP + W A A+
Sbjct: 162 PVGIGAGITPFNFPGMIPMWMFAPAI 187
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 35.4 bits (82), Expect = 4e-04
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 15/56 (26%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
A R+++EL + +PPP I+ + + A I
Sbjct: 3 MQRASRLKRELHMLATEPPPG---------------ITCWQDKDQMDDLRAQILGG 43
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 35.4 bits (82), Expect = 4e-04
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 18/61 (29%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
MS + + +R+ ++ + D PP +SA P V WNA I
Sbjct: 1 MS---TPARRRLMRDFKRMKEDAPPG---------------VSASPLPDNVMVWNAMIIG 42
Query: 61 P 61
P
Sbjct: 43 P 43
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 35.6 bits (83), Expect = 5e-04
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 9 AKRIQKELAEITLDPPPN------YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
K+I + I D + V E PLGVV I+ FN+P+ +
Sbjct: 130 LKKIGGDY--IPGDWTYDTLETEGLVRRE---PLGVVAAITPFNYPLFDAVNKITYSF 182
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 35.3 bits (82), Expect = 5e-04
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
N + P+G++ I P + + + I+L
Sbjct: 93 DNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISL 128
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 34.9 bits (81), Expect = 5e-04
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 7 TSAKRIQKELAEITLDPPPN 26
+++R+ KEL EI N
Sbjct: 2 AASRRLMKELEEIRKCGMKN 21
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 34.9 bits (81), Expect = 5e-04
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN 26
+ + + KE+ +T DPP
Sbjct: 7 VENLPPHIIRLVYKEVTTLTADPPDG 32
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 34.9 bits (81), Expect = 6e-04
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 20/61 (32%)
Query: 4 ALSTSA-KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 60
A S +RI KE + +P P I A P ++ IA
Sbjct: 1 AGSAGLPRRIIKETQRLLAEPVPG---------------IKA--EPDESNARYFHVVIAG 43
Query: 61 P 61
P
Sbjct: 44 P 44
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 34.6 bits (80), Expect = 7e-04
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 23/64 (35%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAA 57
MS T+ KR+ KEL ++ D PP I A P + ++ W+
Sbjct: 1 MS---KTAQKRLLKELQQLIKDSPPG---------------IVA--GPKSENNIFIWDCL 40
Query: 58 IALP 61
I P
Sbjct: 41 IQGP 44
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 34.6 bits (80), Expect = 7e-04
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 19/60 (31%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAI 58
+ + ++ ++ + I+A PV+ + W I
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKG---------------ITA--KPVSEDMMEWEVEI 59
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 34.7 bits (80), Expect = 8e-04
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 20/59 (33%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAAIALP 61
+S K + EL + +P V +Y W AI P
Sbjct: 6 PSSQKALLLELKGLQEEPVEG---------------FRV--TLVDEGDLYNWEVAIFGP 47
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 34.3 bits (79), Expect = 8e-04
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
+ S KRI K+L + + N + +P +Y W + P
Sbjct: 7 NISNKRIIKDLKLLLEEVDANNEANSSGSP---HSTAIFSVDTDTIYNWILKVKAP 59
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
Y E PLGV I A+N+P + W A AL
Sbjct: 149 AYTRRE---PLGVCAGILAWNYPFMIAAWKCAPAL 180
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 33.9 bits (78), Expect = 0.001
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 20/59 (33%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAAIALP 61
T+ KR+ E ++TL+PP I A P+ + W A I P
Sbjct: 2 GTALKRLMAEYKQLTLNPPEG---------------IVA--GPMNEENFFEWEALIMGP 43
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 33.8 bits (78), Expect = 0.001
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 13/61 (21%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
MS + R+ +E D P + V + + + W AI
Sbjct: 4 MS---GIALSRLAQERKAWRKDHPFGF----------VAVPTKNPDGTMNLMNWECAIPG 50
Query: 61 P 61
Sbjct: 51 K 51
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 33.6 bits (78), Expect = 0.002
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
Y E PLGVV I A+N+PV + W +A AL
Sbjct: 136 VYTRRE---PLGVVAGIGAWNYPVQIALWKSAPAL 167
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 33.4 bits (77), Expect = 0.002
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 9 AKRIQKELAEITLDPPPN 26
+RI KE + +PPP
Sbjct: 3 PRRITKETQNLANEPPPG 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 33.4 bits (77), Expect = 0.002
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAI 58
MS S +R+Q+E + D P + + + + + W A I
Sbjct: 1 MS---SLCLQRLQEERKKWRKDHPFGF----------YAKPVKKADGSMDLQKWEAGI 45
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
P GVV + +NFP + + AL
Sbjct: 139 PHGVVAVFGPYNFPGHLPNGHIVPAL 164
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIAL 60
PLGV+ IS FNFP+ + + A A+
Sbjct: 143 PLGVISSISPFNFPMNLSMRSIAPAI 168
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 33.1 bits (76), Expect = 0.003
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN 26
MS S +R+ ++ ++
Sbjct: 20 MSSP-SPGKRRMDTDVIKLIESKHEV 44
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 33.3 bits (77), Expect = 0.003
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
Y + P G VGII+ +N P+ + W A AL
Sbjct: 156 YYTVRV---PAGPVGIITPWNAPLMLSTWRIAPAL 187
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 32.9 bits (76), Expect = 0.003
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 9 AKRIQKELAEITLDPPPN---YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A+++ P +VL E P+GVVG+I+ +N+P+ + W A AL
Sbjct: 125 AEKLDARQKAPVSLPMDTFKSHVLRE---PIGVVGLITPWNYPMLMATWKVAPAL 176
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 32.8 bits (75), Expect = 0.004
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNYV 28
K + R+ +EL E V
Sbjct: 28 HCKGVKVPRNFRLLEELEEGQKGVGDGTV 56
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 32.7 bits (75), Expect = 0.004
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 2 SKALSTSA-KRIQKELAEITLDPPPNYV 28
S+ R+Q+E + D P +
Sbjct: 4 HHHHSSLCKTRLQEERKQWRRDHPFGFY 31
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 32.7 bits (74), Expect = 0.005
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 6 STSAKRIQKELAEITLDPPPNY 27
+ A+R+ +E ++ P +
Sbjct: 75 AARARRLAQEAVTLSTSLPLSS 96
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 32.3 bits (74), Expect = 0.005
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 6 STSAKRIQKELAEITLDPPPN 26
S + RIQK++ E+ L +
Sbjct: 5 SAAQLRIQKDINELNLPKTCD 25
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 32.5 bits (75), Expect = 0.005
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ ++ E P+GVV I+ +N+P+ W A AL
Sbjct: 164 SKIVKE---PVGVVTQITPWNYPLLQASWKIAPAL 195
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 32.4 bits (74), Expect = 0.005
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNYV 28
S + R+ +EL E V
Sbjct: 18 GSTGVKVPRNFRLLEELEEGQKGVGDGTV 46
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 32.2 bits (73), Expect = 0.006
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 12/61 (19%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ + +RI++E E+ + I IA
Sbjct: 51 EFDMANIAVQRIKREFKEVLKSEETS------------KNQIKVDLVDENFTELRGEIAG 98
Query: 61 P 61
P
Sbjct: 99 P 99
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 32.1 bits (74), Expect = 0.006
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
Y E P+GV G I +NFP+ ++ W AL
Sbjct: 153 TYTRSE---PVGVCGQIIPWNFPLLMFLWKIGPAL 184
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 32.2 bits (74), Expect = 0.007
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
E P+GV GI+ +N+P+ + W A L
Sbjct: 172 TLTKKE---PVGVCGIVIPWNYPLMMLSWKTAACL 203
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 32.2 bits (74), Expect = 0.007
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
VL E P+GVVGII+ +NFP + A+
Sbjct: 155 GLVLRE---PVGVVGIITPWNFPFIIASERVPWAI 186
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 31.7 bits (73), Expect = 0.009
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+Y E P+GV G I +NFP+ + W AL
Sbjct: 152 SYTRHE---PVGVCGQIIPWNFPLLMQAWKLGPAL 183
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 31.5 bits (72), Expect = 0.010
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 2 SKALSTSA-KRIQKELAEITLDPPPN 26
+ A++ A +RI++E E+ +
Sbjct: 2 AMAMANIAVQRIKREFKEVLKSEETS 27
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 30.7 bits (70), Expect = 0.017
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 19/61 (31%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAF---NFPVAVYGWNAA 57
MSK R+ +EL + P S + + + WN
Sbjct: 2 MSKV--PRNFRLLEELEKGEKGFGP--------------ESCSYGLADSDDITMTKWNGT 45
Query: 58 I 58
I
Sbjct: 46 I 46
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 31.0 bits (71), Expect = 0.018
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 23 PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ V E P+GVVG I A+N P+ + A AL
Sbjct: 137 YGQSIVSRE---PVGVVGAIVAWNVPLFLAVNKIAPAL 171
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 30.3 bits (69), Expect = 0.024
Identities = 2/19 (10%), Positives = 6/19 (31%)
Query: 9 AKRIQKELAEITLDPPPNY 27
+ ++ + T Y
Sbjct: 1 GTSLTRKQCDFTKLIMAGY 19
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 30.6 bits (70), Expect = 0.025
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ + + PLGVV I+ +N+P+ + W A AL
Sbjct: 153 SMIRRD---PLGVVASIAPWNYPLMMAAWKLAPAL 184
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 30.6 bits (70), Expect = 0.025
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 18 EITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
E + V+ E +GV G+I+ +NFP A A
Sbjct: 125 EFEERRGDDLVVKE---AIGVSGLITPWNFPTNQTSLKLAAAF 164
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 30.0 bits (68), Expect = 0.031
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNYV 28
+ + + R+ EL V
Sbjct: 15 YFQGIVPRSFRLLDELERGQKGNVSEGV 42
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 30.1 bits (68), Expect = 0.032
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN 26
M+ + + +RI++E E+ +
Sbjct: 2 MA---NIAVQRIKREFKEVLKSEETS 24
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A
{Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 29.5 bits (66), Expect = 0.059
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPN 26
+ + S A R+ KEL +I
Sbjct: 20 GAVSGSVQASDRLMKELRDIYRSQSYK 46
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 29.4 bits (67), Expect = 0.060
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
A+R + EI P +L LGV I +NFP + A AL
Sbjct: 119 ARRYE---GEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPAL 167
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 29.4 bits (67), Expect = 0.074
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ + + P+G+VG I+ +N+P+ + W A A+
Sbjct: 155 SMIRRD---PIGIVGSIAPWNYPLMMMAWKLAPAI 186
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 29.1 bits (66), Expect = 0.094
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 35 PLGVVGIISAFNFPVA 50
P GVV I+A+NFP+A
Sbjct: 148 PRGVVVGITAWNFPLA 163
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 28.7 bits (65), Expect = 0.11
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 22 DPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
+ + +GVVG+I+ +N+P+ AL
Sbjct: 151 GNEQAILHYD---AIGVVGLITPWNWPMNQVTLKVIPAL 186
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 28.7 bits (65), Expect = 0.13
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 35 PLGVVGIISAFNFPVA 50
P+GV +I+ +NFP A
Sbjct: 146 PIGVAAVITPWNFPSA 161
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 28.3 bits (64), Expect = 0.16
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 35 PLGVVGIISAFNFPVA 50
P+GV I+ +NFP A
Sbjct: 145 PIGVTAAITPWNFPAA 160
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 28.3 bits (64), Expect = 0.17
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 35 PLGVVGIISAFNFPVA 50
P+GV I+ +NFP A
Sbjct: 168 PVGVTAAITPWNFPAA 183
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 28.3 bits (64), Expect = 0.17
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 35 PLGVVGIISAFNFPVA 50
P+GV I+ +NFP A
Sbjct: 148 PIGVCAAITPWNFPAA 163
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 28.3 bits (64), Expect = 0.19
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 35 PLGVVGIISAFNFPVA 50
P+GV G+I +NFP+
Sbjct: 147 PVGVTGLIVPWNFPIG 162
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 27.8 bits (62), Expect = 0.23
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN 26
M+ T RI KE I +
Sbjct: 3 MA---DTCMSRIVKEYKVILKTLASD 25
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 27.6 bits (62), Expect = 0.29
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFP 48
AK + E + PP+ G V IS FNF
Sbjct: 174 AKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFT 213
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating
tgtwinscan_2721, structural genomics, structural
genomics consortium, SGC; 2.11A {Toxoplasma gondii}
SCOP: d.20.1.1
Length = 193
Score = 26.7 bits (59), Expect = 0.61
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 3 KALSTSAKRIQKELAEITLDPPPNYVLLENWN--PLGVVGIISAFNFPVA--VYGWNAAI 58
+ R+ KELA+I + + G +SA V ++ W I
Sbjct: 28 RGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHG----VSA--QIVGGDIHRWRGFI 81
Query: 59 ALP 61
A P
Sbjct: 82 AGP 84
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 26.2 bits (58), Expect = 0.89
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNYV 28
MS A + + +R + + + Y
Sbjct: 5 MSGAGNLRSNRRREMDYMRLCNSTRKVYP 33
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein
structure initiative; 2.20A {Thermoplasma acidophilum
dsm 1728} SCOP: a.4.5.28 b.43.5.2
Length = 230
Score = 26.2 bits (57), Expect = 0.93
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 18 EITLDPPPNYVLLENWNPLGVVGII-------SAFNFPVAVYGWNAAIALP 61
++ P + + + + G S FP + + +P
Sbjct: 137 KVDQASLPELRKIRGFRGIHIEGFKTEDRTFGSVKAFPAKIQNIPCFVIMP 187
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 24.4 bits (54), Expect = 3.7
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 35 PLGVVGII 42
P+G +GII
Sbjct: 125 PIGPIGII 132
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine
nucleotide biosynthesis, transcriptional attenuation,
RNA-binding protein; 2.60A {Thermus thermophilus} SCOP:
c.61.1.1
Length = 181
Score = 24.2 bits (53), Expect = 3.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 9 AKRIQKELAEITLDPPPNYVL 29
A RI + +AE P VL
Sbjct: 47 AHRIARFIAEFEGKEVPVGVL 67
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 24.5 bits (54), Expect = 4.0
Identities = 4/8 (50%), Positives = 7/8 (87%)
Query: 35 PLGVVGII 42
P+GV+ +I
Sbjct: 126 PVGVLLVI 133
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 24.1 bits (53), Expect = 5.1
Identities = 4/8 (50%), Positives = 7/8 (87%)
Query: 35 PLGVVGII 42
P+GV+ +I
Sbjct: 140 PIGVLLVI 147
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha
beta protein, rigid helical backbon substrate-free, heme
transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Length = 255
Score = 24.1 bits (53), Expect = 5.3
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 9 AKRIQKELAEI---TLDPPPNYVLLENWNPLGVVG-------IISAFNFPVAVYGWNAAI 58
+ Q+ LA + L +V+ G +I A G NA
Sbjct: 118 IEDYQQRLAAVNKTPLPVKVLFVMSHGGLTPMAAGQNTAADAMIRAAG------GSNAMQ 171
Query: 59 ALPGWQVLGQVALV 72
++ L Q ++
Sbjct: 172 GFSRYRPLSQEGVI 185
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding P
pyrimidine biosynthesis; 1.60A {Bacillus subtilis}
SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A
1xzn_A*
Length = 181
Score = 23.8 bits (52), Expect = 5.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 9 AKRIQKELAEITLDPPPNYVL 29
AKR+ + + +I +P +
Sbjct: 47 AKRLAERIEQIEGNPVTVGEI 67
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 23.9 bits (52), Expect = 7.3
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 37 GVVGIISAFNFPVAVYGWNAAIALPGWQVL--------GQ-VALV 72
GV +++A + W +A VL Q VA+V
Sbjct: 74 GVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIV 118
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted
repeats, LEUT-fold, galactose; 2.73A {Vibrio
parahaemolyticus} PDB: 2xq2_B 2kpe_A
Length = 593
Score = 23.6 bits (51), Expect = 8.0
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIALP 61
+G+ G + +A Y W +AI L
Sbjct: 70 FIGMSGSGYSIGLAIASYEWMSAITLI 96
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 23.5 bits (51), Expect = 8.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 35 PLGVVGIISAFNFPVAVYGWNAAIALP 61
+G+ G + +A Y W +AI L
Sbjct: 41 FIGMSGSGYSIGLAIASYEWMSAITLI 67
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 23.3 bits (51), Expect = 9.7
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 9 AKRIQKELAEITLDPPPN--YVLLENWNPLGVVGIISAFNFPVA 50
+ L L+ Y L + GV+ +NFP+
Sbjct: 101 GPEM---LKPTKLNSDLGNAYYLKQ---STGVIMACEPWNFPLY 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,237,850
Number of extensions: 63928
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 107
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)