RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3658
(74 letters)
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 42.8 bits (100), Expect = 2e-07
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 6 STSAKRIQKELAEITLDPPPNY 27
STSAKRIQKELAEITLDPPPN
Sbjct: 1 STSAKRIQKELAEITLDPPPNC 22
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 39.7 bits (92), Expect = 3e-06
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
SK + +KR+Q+EL + + P I+AF ++ W A + P
Sbjct: 4 SKERHSVSKRLQQELRTLLMSGDPG---------------ITAFPDGDNLFKWVATLDGP 48
Query: 62 GWQV 65
V
Sbjct: 49 KDTV 52
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 37.9 bits (87), Expect = 2e-05
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 8 SAKRIQKELAEITLDPPPNYVLL--ENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
A R+++EL + +PPP ++ I+ N P + + +P
Sbjct: 3 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP 58
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 36.7 bits (84), Expect = 4e-05
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 8 SAKRIQKELAEITLDPPPN--YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
++ R+ KEL ++ PPP + ++ N L ++ P + +N I+ P
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFP 56
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 35.9 bits (82), Expect = 8e-05
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 7 TSAKRIQKELAEITLDPPPNY 27
T+ +R++++ I DP P
Sbjct: 1 TATQRLKQDYLRIKKDPVPYI 21
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 35.9 bits (82), Expect = 9e-05
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 6 STSAKRIQKELAEITLDPPPNYVL 29
T+ KR+ KEL ++ D PP V
Sbjct: 2 KTAQKRLLKELQQLIKDSPPGIVA 25
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 35.5 bits (81), Expect = 1e-04
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 6 STSAKRIQKELAEITLDPPPNY 27
+ S +R+ ++ ++ DPP
Sbjct: 2 TPSRRRLMRDFKKLQEDPPAGV 23
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 35.5 bits (81), Expect = 1e-04
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 6 STSA-KRIQKELAEITLDPPPNY 27
ST A +R+ ++ + D PP
Sbjct: 1 STPARRRLMRDFKRMKEDAPPGV 23
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 34.6 bits (79), Expect = 2e-04
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 5 LSTSAKRIQKELAEITLDPPPNYVL 29
+++ KR+QKEL + DPPP L
Sbjct: 1 MASMQKRLQKELLALQNDPPPGMTL 25
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 35.0 bits (80), Expect = 2e-04
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGII 42
S + RIQK++ E+ L + + + L +I
Sbjct: 2 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI 38
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 34.7 bits (79), Expect = 2e-04
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 9 AKRIQKELAEITLDPPPNY--VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
++R+ KEL EI N+ + ++ N L G+I N P + I P
Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 55
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 34.0 bits (77), Expect = 4e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 8 SAKRIQKELAEITLDPPPNY 27
+ KRIQKEL ++ DPP
Sbjct: 2 ALKRIQKELQDLGRDPPAQC 21
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 34.0 bits (77), Expect = 5e-04
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 7 TSAKRIQKELAEITLDPPPNYVL 29
+ AKRI KE+ + DP + L
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITL 23
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 33.6 bits (76), Expect = 6e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 10 KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYG 53
R+ +E D P +V + NP G + + N+ A+ G
Sbjct: 5 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNL---MNWECAIPG 45
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 33.2 bits (75), Expect = 8e-04
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 8 SAKRIQKELAEITLDPPPN 26
KR+Q+EL + +
Sbjct: 2 VGKRLQQELMTLMMSGDKG 20
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 33.8 bits (77), Expect = 8e-04
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 9 AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
++ T+ N+ P+GV G I +NFP+ ++ W AL
Sbjct: 126 CAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPAL 177
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 33.2 bits (75), Expect = 8e-04
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 6 STSAKRIQKELAEITLDPPPNY 27
++ KRI KE ++ DP P
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGI 23
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 33.2 bits (75), Expect = 0.001
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 10 KRIQKELAEITLDPPPNY 27
+RI KE + +P P
Sbjct: 5 RRIIKETQRLLAEPVPGI 22
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 32.4 bits (73), Expect = 0.002
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 10 KRIQKELAEITLDPPPN 26
+ + KE+ +T DPP
Sbjct: 9 RLVYKEVTTLTADPPDG 25
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 32.4 bits (73), Expect = 0.002
Identities = 5/60 (8%), Positives = 14/60 (23%), Gaps = 15/60 (25%)
Query: 6 STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQV 65
+ + ++ ++ + I+A + W I V
Sbjct: 3 GRAYLLLHRDFCDLKENNYKG---------------ITAKPVSEDMMEWEVEIEGLQNSV 47
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25
kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 32.5 bits (73), Expect = 0.002
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN----YVLLENWNPL 36
M+ + + +RI++E E+ + V L + N
Sbjct: 1 MA---NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFT 37
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 31.7 bits (71), Expect = 0.003
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 6 STSAKRIQKELAEITLDPPPN----YVLLENWNPLGVVGIISAFNFPVAVYG 53
++ R+ KEL +I V L N + + + ++
Sbjct: 3 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHS 54
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 31.9 bits (72), Expect = 0.003
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 20 TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
T+ ++ P+GV G I +NFP+ + W AL
Sbjct: 137 TIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPAL 177
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 31.7 bits (71), Expect = 0.003
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 8 SAKRIQKELAEITLDPPPN-YVLLENWNPL 36
S+ ++K+LA++ P L + N +
Sbjct: 1 SSLLLKKQLADMRRVPVDGFSAGLVDDNDI 30
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 30.1 bits (67), Expect = 0.011
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 11 RIQKELAEITLDPPPNY 27
RIQKEL +PP N
Sbjct: 2 RIQKELHNFLNNPPINC 18
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 30.1 bits (67), Expect = 0.011
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 6 STSAKRIQKELAEITLDPPPNYVL--LENWN 34
S +R+ ++ ++ +L L +
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVTILGGLNEFV 32
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 28.5 bits (63), Expect = 0.036
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 11 RIQKELAEITLDPPPNY 27
++++LAE+ +P +
Sbjct: 3 LLRRQLAELNKNPVEGF 19
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 25.2 bits (54), Expect = 0.84
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 10 KRIQKELAEI 19
R+ KELA+I
Sbjct: 4 ARLLKELADI 13
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 24.5 bits (53), Expect = 1.2
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 9 AKRIQKELAEITLDPPPNYV 28
R+ +EL E V
Sbjct: 7 NFRLLEELEEGQKGVGDGTV 26
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 24.7 bits (53), Expect = 1.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 10 KRIQKELAEI 19
KRI KELA I
Sbjct: 23 KRINKELANI 32
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 24.2 bits (52), Expect = 1.6
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 9 AKRIQKELAEITLDPPPNYV 28
R+ +EL + P
Sbjct: 6 NFRLLEELEKGEKGFGPESC 25
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor
complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 48
Score = 22.9 bits (49), Expect = 2.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 10 KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNF 47
++ KEL E + VL + + L V +ISA F
Sbjct: 3 RKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEF 40
>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 209
Score = 23.0 bits (49), Expect = 4.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 23 PPPNYVLLENWNPLGVVG 40
PPP L + W L +VG
Sbjct: 159 PPPTEYLRQGWRSLSMVG 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,445
Number of extensions: 11718
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 35
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)