Query psy3659
Match_columns 78
No_of_seqs 116 out of 1028
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:21:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 99.9 1.1E-25 3.7E-30 140.2 7.8 74 4-77 3-84 (125)
2 2h2y_A Ubiquitin-conjugating e 99.9 6.3E-25 2.1E-29 138.5 8.7 74 4-77 17-98 (136)
3 4gpr_A Ubiquitin-conjugating e 99.9 2.5E-24 8.7E-29 137.5 9.0 73 5-77 2-81 (151)
4 1yh2_A HSPC150 protein similar 99.9 2.6E-24 9E-29 139.7 9.2 73 5-77 2-81 (169)
5 1zdn_A Ubiquitin-conjugating e 99.9 4E-24 1.4E-28 137.5 9.3 72 6-77 12-90 (158)
6 2pwq_A Ubiquitin conjugating e 99.9 3.3E-24 1.1E-28 144.2 9.1 74 4-77 20-100 (216)
7 2a7l_A Hypothetical ubiquitin- 99.9 9.5E-25 3.3E-29 137.9 6.1 75 3-77 18-103 (136)
8 3bzh_A Ubiquitin-conjugating e 99.9 2.8E-24 9.6E-29 142.5 8.6 74 4-77 45-125 (194)
9 3h8k_A Ubiquitin-conjugating e 99.9 4.1E-24 1.4E-28 137.9 9.0 72 6-77 2-81 (164)
10 2c4o_A Ubiquitin-conjugating e 99.9 5E-24 1.7E-28 138.1 9.4 73 5-77 17-96 (165)
11 1ayz_A UBC2, ubiquitin-conjuga 99.9 1.9E-24 6.6E-29 140.5 7.5 71 7-77 4-81 (169)
12 2e2c_A Ubiquitin conjugating e 99.9 2.9E-24 9.9E-29 137.8 7.8 72 6-77 8-86 (156)
13 2ucz_A UBC7, ubiquitin conjuga 99.9 5.9E-24 2E-28 137.4 9.2 72 6-77 3-82 (165)
14 2c2v_B Ubiquitin-conjugating e 99.9 2.1E-24 7E-29 138.4 6.9 71 7-77 5-82 (154)
15 2ayv_A Ubiquitin-conjugating e 99.9 4.8E-24 1.6E-28 138.4 8.6 72 6-77 20-98 (166)
16 1yrv_A Ubiquitin-conjugating l 99.9 6E-24 2.1E-28 138.3 8.6 73 5-77 20-100 (169)
17 1z2u_A Ubiquitin-conjugating e 99.9 3.8E-24 1.3E-28 136.5 7.4 72 6-77 3-81 (150)
18 2aak_A UBC1, ubiquitin conjuga 99.9 4.1E-24 1.4E-28 136.6 7.4 71 7-77 4-81 (152)
19 3rz3_A Ubiquitin-conjugating e 99.9 1.1E-23 3.6E-28 138.4 9.1 73 5-77 5-85 (183)
20 2awf_A Ubiquitin-conjugating e 99.9 7.1E-24 2.4E-28 138.1 8.1 74 4-77 14-95 (172)
21 3fn1_B NEDD8-conjugating enzym 99.9 1.2E-23 4E-28 136.2 8.9 76 2-77 9-91 (167)
22 1fxt_A Ubiquitin-conjugating e 99.9 5.9E-24 2E-28 135.4 6.9 70 8-77 2-79 (149)
23 1wzv_A Ubiquitin-conjugating e 99.9 6.4E-24 2.2E-28 136.0 6.9 72 6-77 3-81 (155)
24 3rcz_B SUMO-conjugating enzyme 99.9 6.8E-24 2.3E-28 137.3 6.8 74 4-77 7-92 (163)
25 2a4d_A Ubiquitin-conjugating e 99.9 3.1E-23 1E-27 134.1 9.7 73 5-77 23-106 (160)
26 1jat_A Ubiquitin-conjugating e 99.9 2.8E-24 9.5E-29 137.8 4.7 72 6-77 4-82 (155)
27 2r0j_A Ubiquitin carrier prote 99.9 1E-23 3.4E-28 134.5 7.0 69 9-77 3-78 (149)
28 1y8x_A Ubiquitin-conjugating e 99.9 2E-23 6.7E-28 134.7 8.0 73 3-77 2-81 (160)
29 2q0v_A Ubiquitin-conjugating e 99.9 5.7E-23 1.9E-27 132.3 9.1 74 4-77 18-102 (156)
30 1i7k_A Ubiquitin-conjugating e 99.9 1.1E-23 3.8E-28 138.2 5.8 72 6-77 29-107 (179)
31 2bep_A Ubiquitin-conjugating e 99.9 4.7E-23 1.6E-27 132.5 8.3 71 7-77 8-88 (159)
32 1jat_B Ubiquitin-conjugating e 99.9 7.6E-23 2.6E-27 129.1 8.9 71 7-77 6-87 (138)
33 2grr_A Ubiquitin-conjugating e 99.9 2.1E-23 7E-28 134.5 6.2 74 4-77 3-89 (161)
34 2gjd_A Ubiquitin-conjugating e 99.9 2.4E-23 8.3E-28 133.7 6.3 71 7-77 4-86 (157)
35 2f4z_A Tgtwinscan_2721 - E2 do 99.9 3E-23 1E-27 137.5 6.4 71 7-77 32-122 (193)
36 3k9o_A Ubiquitin-conjugating e 99.9 5.3E-23 1.8E-27 136.5 7.5 71 7-77 5-85 (201)
37 2nvu_C NEDD8-conjugating enzym 99.9 8.9E-23 3.1E-27 133.9 7.5 73 3-77 22-101 (180)
38 3o2u_A NEDD8-conjugating enzym 99.9 1.4E-22 4.7E-27 133.9 8.1 74 2-77 24-110 (190)
39 1c4z_D UBCH7, ubiquitin conjug 99.9 3.6E-23 1.2E-27 132.4 5.1 71 7-77 2-79 (154)
40 1tte_A Ubiquitin-conjugating e 99.9 2.1E-23 7.2E-28 140.2 3.8 71 7-77 2-80 (215)
41 3e46_A Ubiquitin-conjugating e 99.9 3.8E-22 1.3E-26 136.8 8.6 71 7-77 57-137 (253)
42 2hlw_A Ubiquitin-conjugating e 99.9 1.7E-22 5.9E-27 131.6 6.3 72 6-77 34-116 (170)
43 2y9m_A Ubiquitin-conjugating e 99.9 5.7E-22 2E-26 129.0 7.6 71 7-77 6-96 (172)
44 4ddg_A Ubiquitin-conjugating e 99.9 4.4E-22 1.5E-26 143.1 7.5 72 6-77 2-80 (399)
45 2onu_A Ubiquitin-conjugating e 99.9 1.2E-22 4.2E-27 130.0 2.7 68 7-77 2-76 (152)
46 2f4w_A Ubiquitin-conjugating e 99.8 1.6E-21 5.5E-26 128.5 6.8 65 5-69 12-80 (187)
47 4ds2_A Ubiquitin-conjugating e 99.8 5.8E-22 2E-26 128.4 3.9 71 7-77 8-99 (167)
48 2z5d_A Ubiquitin-conjugating e 99.8 2.7E-21 9.2E-26 126.9 6.3 67 7-77 25-98 (179)
49 1yf9_A Ubiquitin carrier prote 99.8 6E-21 2.1E-25 124.3 6.6 67 7-77 12-85 (171)
50 3ceg_A Baculoviral IAP repeat- 99.8 6.5E-20 2.2E-24 129.3 8.2 72 6-77 75-162 (323)
51 1zuo_A Hypothetical protein LO 99.8 2.3E-20 7.8E-25 123.0 3.9 71 6-76 26-118 (186)
52 2z6o_A UFM1-conjugating enzyme 99.6 3E-16 1E-20 102.1 2.6 65 7-77 32-114 (172)
53 3kpa_A Probable ubiquitin fold 98.7 2.9E-09 9.8E-14 68.4 2.0 59 8-70 35-105 (168)
54 3r3q_A Suppressor protein STP2 97.9 1.7E-05 5.9E-10 51.0 5.4 60 9-69 30-100 (162)
55 3obq_A Tumor susceptibility ge 96.9 0.00063 2.1E-08 43.0 3.0 34 34-69 51-88 (146)
56 2ebm_A RWD domain-containing p 96.7 0.0052 1.8E-07 36.9 6.2 67 4-70 7-75 (128)
57 2yz0_A Serine/threonine-protei 96.4 0.047 1.6E-06 33.1 8.8 66 5-70 8-82 (138)
58 1ukx_A GCN2, GCN2 EIF2alpha ki 95.6 0.083 2.8E-06 31.8 7.2 66 4-69 7-82 (137)
59 2day_A Ring finger protein 25; 93.9 0.034 1.1E-06 33.3 2.4 61 9-69 10-78 (128)
60 2ebk_A RWD domain-containing p 93.8 0.041 1.4E-06 33.0 2.6 20 50-69 56-75 (128)
61 2dax_A Protein C21ORF6; RWD do 92.7 0.076 2.6E-06 32.8 2.6 20 51-70 74-93 (152)
62 2daw_A RWD domain containing p 92.5 0.084 2.9E-06 32.9 2.6 20 51-70 76-95 (154)
63 3zqs_A E3 ubiquitin-protein li 74.8 2.8 9.4E-05 27.2 3.1 53 10-69 4-57 (186)
64 3u3c_B Paxillin LD2 peptide; 4 63.1 7.8 0.00027 16.9 2.4 21 7-27 5-25 (26)
65 3g9r_A Fusion complex of HIV-1 53.9 12 0.00042 18.3 2.4 17 5-21 26-42 (42)
66 1m46_B IQ4, IQ4 motif from MYO 40.0 26 0.00087 15.2 2.1 15 6-20 7-21 (26)
67 2bum_A Protocatechuate 3,4-dio 39.7 19 0.00066 23.4 2.4 22 48-69 109-135 (209)
68 2rf4_B DNA-directed RNA polyme 37.3 20 0.00068 20.5 1.9 13 7-19 62-74 (87)
69 2jrw_A Cyclic extended PEP.1; 33.0 17 0.00057 15.9 0.9 6 57-62 6-11 (26)
70 4b0y_A Heme-binding protein 2; 28.6 44 0.0015 21.9 2.8 28 42-69 117-144 (227)
71 3kxt_A Chromatin protein CREN7 28.6 40 0.0014 17.6 2.0 11 54-64 46-56 (56)
72 2rp4_A Transcription factor P5 28.1 35 0.0012 18.9 1.9 12 49-60 19-30 (76)
73 2ccv_A Helix pomatia agglutini 26.4 47 0.0016 19.0 2.3 18 51-69 30-47 (101)
74 1hxv_A Trigger factor; FKBP fo 24.5 24 0.00081 20.4 0.8 18 48-65 79-96 (113)
75 2jsp_A Transcriptional regulat 23.0 21 0.00071 20.4 0.3 19 51-69 48-66 (87)
76 2bum_B Protocatechuate 3,4-dio 20.7 31 0.0011 23.0 0.9 22 48-69 134-162 (241)
77 3iab_B Ribonucleases P/MRP pro 20.3 82 0.0028 19.4 2.7 28 2-29 38-65 (140)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=99.93 E-value=1.1e-25 Score=140.16 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eee-ccc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERF-WNF 75 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~-w~~ 75 (78)
+|+.+.+||++|+++++++++.|+++.++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++ ||+
T Consensus 3 ~m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 82 (125)
T 2fo3_A 3 NMGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT 82 (125)
T ss_dssp ------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence 57889999999999999999999999998899988 443 9999999999999999999999999999 486 999
Q ss_pred cC
Q psy3659 76 SL 77 (78)
Q Consensus 76 ~~ 77 (78)
++
T Consensus 83 nv 84 (125)
T 2fo3_A 83 HV 84 (125)
T ss_dssp TB
T ss_pred cC
Confidence 86
No 2
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.92 E-value=6.3e-25 Score=138.52 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eee-ccc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERF-WNF 75 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~-w~~ 75 (78)
+++.+.+||++|+++++++++.|+.+.++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++ ||+
T Consensus 17 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 96 (136)
T 2h2y_A 17 NLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHT 96 (136)
T ss_dssp CTTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCC
Confidence 56789999999999999999999999998889988 443 9999999999999999999999999999 476 999
Q ss_pred cC
Q psy3659 76 SL 77 (78)
Q Consensus 76 ~~ 77 (78)
++
T Consensus 97 nv 98 (136)
T 2h2y_A 97 HV 98 (136)
T ss_dssp TB
T ss_pred cC
Confidence 86
No 3
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=99.91 E-value=2.5e-24 Score=137.49 Aligned_cols=73 Identities=32% Similarity=0.519 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+.+||++|+++|+++++.|+++.+.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+++
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 3568999999999999999999999999899988 443 9999999999999999999999999999 59999987
No 4
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.91 E-value=2.6e-24 Score=139.71 Aligned_cols=73 Identities=15% Similarity=0.303 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+.+||++|+++|+++++.||++.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|+
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 4678999999999999999999999999899988 343 9999999999999999999999999999 59999986
No 5
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=99.91 E-value=4e-24 Score=137.54 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
..+.+||++|+++|++++++||++.++++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+++
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 90 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCC
Confidence 347899999999999999999999998899987 443 9999999999999999999999999999 59999986
No 6
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=99.91 E-value=3.3e-24 Score=144.20 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
+.+.+.+||++|+++|++++++||++.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 99 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN 99 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence 35678999999999999999999999999899988 443 9999999999999999999999999999 5999999
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 100 I 100 (216)
T 2pwq_A 100 I 100 (216)
T ss_dssp B
T ss_pred C
Confidence 7
No 7
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.91 E-value=9.5e-25 Score=137.94 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCeEEc--cCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeec
Q psy3659 3 KALSTSAKRIQKELAEITLDPPPNCSAG--PKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFW 73 (78)
Q Consensus 3 ~~~~~~~~Rl~kEl~~l~~~~~~~i~~~--p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w 73 (78)
..|+.+++||++|++++++++++|+++. ++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++|
T Consensus 18 ~~Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 97 (136)
T 2a7l_A 18 GSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENI 97 (136)
T ss_dssp GGGTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCC
T ss_pred hhccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 3466667999999999999999999864 78889987 443 9999999999999999999999999999 5898
Q ss_pred --cccC
Q psy3659 74 --NFSL 77 (78)
Q Consensus 74 --~~~~ 77 (78)
|+|+
T Consensus 98 ~~HPNV 103 (136)
T 2a7l_A 98 PVHPHV 103 (136)
T ss_dssp CCBTTB
T ss_pred CCCccC
Confidence 9986
No 8
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=99.91 E-value=2.8e-24 Score=142.50 Aligned_cols=74 Identities=47% Similarity=0.728 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
+++.+.+||++|+++|++++++||.+.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||++
T Consensus 45 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 124 (194)
T 3bzh_A 45 LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCN 124 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred cccHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccce
Confidence 46778999999999999999999999999999998 343 9999999999999999999999999999 5999998
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 125 V 125 (194)
T 3bzh_A 125 I 125 (194)
T ss_dssp B
T ss_pred E
Confidence 6
No 9
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=99.91 E-value=4.1e-24 Score=137.91 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCC-CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGD-NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~-nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.|.+||++|+++|++++++||++.+.++ |+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 46899999999999999999999998765 9987 343 9999999999999999999999999999 59999986
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=99.91 E-value=5e-24 Score=138.10 Aligned_cols=73 Identities=30% Similarity=0.528 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+.+||++|+++|+++++.||++.+.++|++. .++ |++|||+||.|+++|.||++||++||+| +++||+++
T Consensus 17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV 96 (165)
T 2c4o_A 17 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 96 (165)
T ss_dssp CHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcC
Confidence 4568999999999999999999999998899987 343 9999999999999999999999999999 59999987
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.91 E-value=1.9e-24 Score=140.54 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+||++|+++|++++++||.+.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|+
T Consensus 4 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI 81 (169)
T 1ayz_A 4 PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCC
Confidence 68899999999999999999999998889987 343 9999999999999999999999999999 59999986
No 12
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=99.91 E-value=2.9e-24 Score=137.85 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+.+||++|+++|++++++||++.++++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+++
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 86 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence 458999999999999999999999998889988 443 9999999999999999999999999999 59999986
No 13
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.90 E-value=5.9e-24 Score=137.35 Aligned_cols=72 Identities=31% Similarity=0.490 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCC-CCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKG-DNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~-~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+.+||++|+++|++++++||++.+.+ +|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 82 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCC
Confidence 3689999999999999999999999865 68987 443 9999999999999999999999999999 59999987
No 14
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=99.90 E-value=2.1e-24 Score=138.37 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+||++|+++|++++++|+++.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|+
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 82 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcC
Confidence 45799999999999999999999999899988 343 9999999999999999999999999999 59999986
No 15
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.90 E-value=4.8e-24 Score=138.37 Aligned_cols=72 Identities=29% Similarity=0.557 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+.+||++|+++|++++++||++.++++|++. .++ |++|||+||.|+|+|.||++||++||+| +++||+|+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 457899999999999999999999999899987 343 9999999999999999999999999999 59999987
No 16
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=99.90 E-value=6e-24 Score=138.29 Aligned_cols=73 Identities=5% Similarity=0.089 Sum_probs=67.0
Q ss_pred hh-HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 5 LS-TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 5 ~~-~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
|+ .+.+||++|+++|++++++||.+.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 44 58899999999999999999999999899987 443 9999999999999999999999999999 5999999
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 100 I 100 (169)
T 1yrv_A 100 V 100 (169)
T ss_dssp B
T ss_pred c
Confidence 7
No 17
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=99.90 E-value=3.8e-24 Score=136.45 Aligned_cols=72 Identities=31% Similarity=0.546 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
..+.+||++|+++|++++++|+++.+.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+++
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 457899999999999999999999998889987 343 9999999999999999999999999999 59999987
No 18
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=99.90 E-value=4.1e-24 Score=136.58 Aligned_cols=71 Identities=15% Similarity=0.353 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+||++|+++|++++++|+.+.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+++
T Consensus 4 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 68899999999999999999999998889987 343 9999999999999999999999999999 59999986
No 19
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=99.90 E-value=1.1e-23 Score=138.38 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEc-cCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAG-PKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~-p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
++.+.+||++|+++|++++++||++. ++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|
T Consensus 5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 84 (183)
T 3rz3_A 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN 84 (183)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCC
Confidence 35789999999999999999999998 67789988 333 9999999999999999999999999999 5999998
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 85 V 85 (183)
T 3rz3_A 85 I 85 (183)
T ss_dssp B
T ss_pred C
Confidence 6
No 20
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=99.90 E-value=7.1e-24 Score=138.13 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCC-CCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKG-DNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNF 75 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~-~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~ 75 (78)
..+.+.+||+||+++|++++++||++.+.+ +|++. .++ |++|||+||.|+|+|.||++||++||+| +++||+
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP 93 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP 93 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence 346689999999999999999999999865 68987 433 9999999999999999999999999999 599999
Q ss_pred cC
Q psy3659 76 SL 77 (78)
Q Consensus 76 ~~ 77 (78)
|+
T Consensus 94 NV 95 (172)
T 2awf_A 94 NV 95 (172)
T ss_dssp TB
T ss_pred CC
Confidence 87
No 21
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.90 E-value=1.2e-23 Score=136.18 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=67.7
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCeEEcc-CCCCCCe-eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecc
Q psy3659 2 SKALSTSAKRIQKELAEITLDPPPNCSAGP-KGDNPGI-PCT--TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWN 74 (78)
Q Consensus 2 ~~~~~~~~~Rl~kEl~~l~~~~~~~i~~~p-~~~nl~~-~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~ 74 (78)
++.++.+.+||++|+++|++++++||++.+ +++|+++ .++ |.+|||+||.|+++|.||++||++||+| +++||
T Consensus 9 ~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (167)
T 3fn1_B 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH 88 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred ccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence 455788999999999999999999999985 4568887 333 9999999999999999999999999999 59999
Q ss_pred ccC
Q psy3659 75 FSL 77 (78)
Q Consensus 75 ~~~ 77 (78)
+|+
T Consensus 89 Pnv 91 (167)
T 3fn1_B 89 PNI 91 (167)
T ss_dssp SSB
T ss_pred CCC
Confidence 986
No 22
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=99.90 E-value=5.9e-24 Score=135.44 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCC-CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGD-NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~-nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+||++|+++|++++++|+++.+.++ |+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni 79 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 79 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCC
Confidence 469999999999999999999999877 8987 443 9999999999999999999999999999 59999986
No 23
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=99.90 E-value=6.4e-24 Score=136.02 Aligned_cols=72 Identities=17% Similarity=0.362 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEE-ccCCCCCCe-eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSA-GPKGDNPGI-PCT--TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~-~p~~~nl~~-~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+.+||++|+++|++++++|+.+ .++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+++
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 457899999999999999999999 788889988 443 9999999999999999999999999999 59999987
No 24
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=99.90 E-value=6.8e-24 Score=137.30 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCC-----CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---ee
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGD-----NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ER 71 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~-----nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~ 71 (78)
....|.+||+||+++|++++++||++.+.++ |+++ .++ |++|||+||.|+|+|.||++||++||+| ++
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3567999999999999999999999988654 8887 443 9999999999999999999999999999 59
Q ss_pred eccccC
Q psy3659 72 FWNFSL 77 (78)
Q Consensus 72 ~w~~~~ 77 (78)
+||+|+
T Consensus 87 i~HPnV 92 (163)
T 3rcz_B 87 LFHPNV 92 (163)
T ss_dssp CCSTTB
T ss_pred CccCCC
Confidence 999986
No 25
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.89 E-value=3.1e-23 Score=134.14 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCC-eEEcc-CCCC--CCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeec
Q psy3659 5 LSTSAKRIQKELAEITLDPPPN-CSAGP-KGDN--PGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFW 73 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~-i~~~p-~~~n--l~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w 73 (78)
.+++.+||+||+++|++++++| +.+.+ +++| +++ .++ |++|||+||.|+++|.||++||++||+| +++|
T Consensus 23 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred echHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 4678999999999999998888 77776 4554 776 443 9999999999999999999999999999 5999
Q ss_pred cccC
Q psy3659 74 NFSL 77 (78)
Q Consensus 74 ~~~~ 77 (78)
|+++
T Consensus 103 HPNV 106 (160)
T 2a4d_A 103 MNGV 106 (160)
T ss_dssp CTTB
T ss_pred eCCE
Confidence 9987
No 26
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=99.89 E-value=2.8e-24 Score=137.80 Aligned_cols=72 Identities=24% Similarity=0.384 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+.+||++|+++|++++++||++.++++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 346799999999999999999999998889987 333 9999999999999999999999999999 59999986
No 27
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=99.89 E-value=1e-23 Score=134.48 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 9 AKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 9 ~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+||++|+++|++++++|+++.++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+++
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 78 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCC
Confidence 589999999999999999999998889887 443 9999999999999999999999999999 59999986
No 28
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.89 E-value=2e-23 Score=134.67 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=65.8
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCeEEc-cCCCCCCe-eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccc
Q psy3659 3 KALSTSAKRIQKELAEITLDPPPNCSAG-PKGDNPGI-PCT--TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNF 75 (78)
Q Consensus 3 ~~~~~~~~Rl~kEl~~l~~~~~~~i~~~-p~~~nl~~-~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~ 75 (78)
++++.+.+||++|+++| ++++|+++. ++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+
T Consensus 2 ~~~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (160)
T 1y8x_A 2 SMASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP 79 (160)
T ss_dssp CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred CcccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccC
Confidence 56788999999999999 467899997 78889988 333 9999999999999999999999999999 599999
Q ss_pred cC
Q psy3659 76 SL 77 (78)
Q Consensus 76 ~~ 77 (78)
|+
T Consensus 80 nv 81 (160)
T 1y8x_A 80 NI 81 (160)
T ss_dssp TB
T ss_pred cC
Confidence 86
No 29
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.89 E-value=5.7e-23 Score=132.30 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHHHHHhcC-CCCCeEEccCC-C--CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eee
Q psy3659 4 ALSTSAKRIQKELAEITLD-PPPNCSAGPKG-D--NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERF 72 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~-~~~~i~~~p~~-~--nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~ 72 (78)
..+.+.+||++|+++|+++ +++++++.+.+ + |+++ .++ |++|||+||.|+|+|.||++||++||+| +++
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 18 GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp SCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 3567889999999999998 78899988743 3 5877 443 9999999999999999999999999999 599
Q ss_pred ccccC
Q psy3659 73 WNFSL 77 (78)
Q Consensus 73 w~~~~ 77 (78)
||+++
T Consensus 98 ~HPNV 102 (156)
T 2q0v_A 98 EMSCV 102 (156)
T ss_dssp CCTTB
T ss_pred ccCCC
Confidence 99987
No 30
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=99.89 E-value=1.1e-23 Score=138.18 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+.+||++|+++|++++++||++.++++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+++
T Consensus 29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 107 (179)
T 1i7k_A 29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV 107 (179)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcc
Confidence 347899999999999999999999998889987 333 9999999999999999999999999999 59999986
No 31
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=99.89 E-value=4.7e-23 Score=132.52 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcC---CCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 7 TSAKRIQKELAEITLD---PPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~---~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
.+.+||+||+++|+++ ++.|+++.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|
T Consensus 8 ~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 87 (159)
T 2bep_A 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 87 (159)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccC
Confidence 4899999999999985 5789999998889988 433 9999999999999999999999999999 5999998
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 88 i 88 (159)
T 2bep_A 88 I 88 (159)
T ss_dssp B
T ss_pred C
Confidence 7
No 32
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.89 E-value=7.6e-23 Score=129.06 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcC-CCCCeEEccCC-C--CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccc
Q psy3659 7 TSAKRIQKELAEITLD-PPPNCSAGPKG-D--NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNF 75 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~-~~~~i~~~p~~-~--nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~ 75 (78)
.+.+||+||+++++++ ++.++++.+.+ + |+++ .++ |++|||+||.|+++|.||++||++||+| +++||+
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 85 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP 85 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence 4679999999999998 78899988743 3 5777 343 9999999999999999999999999999 599999
Q ss_pred cC
Q psy3659 76 SL 77 (78)
Q Consensus 76 ~~ 77 (78)
|+
T Consensus 86 nv 87 (138)
T 1jat_B 86 CV 87 (138)
T ss_dssp TB
T ss_pred CE
Confidence 87
No 33
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=99.89 E-value=2.1e-23 Score=134.53 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=64.5
Q ss_pred chh-HHHHHHHHHHHHHhcCCCCCeEEccCC-----CCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---e
Q psy3659 4 ALS-TSAKRIQKELAEITLDPPPNCSAGPKG-----DNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---E 70 (78)
Q Consensus 4 ~~~-~~~~Rl~kEl~~l~~~~~~~i~~~p~~-----~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~ 70 (78)
.|+ .+.+||++|+++|++++++|+.+.+.+ +|+++ .++ |++|||+||.|+++|.||++||++||+| +
T Consensus 3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 82 (161)
T 2grr_A 3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP 82 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence 354 588999999999999999999988752 57876 443 9999999999999999999999999999 5
Q ss_pred eeccccC
Q psy3659 71 RFWNFSL 77 (78)
Q Consensus 71 ~~w~~~~ 77 (78)
++||+++
T Consensus 83 ~i~HPnv 89 (161)
T 2grr_A 83 PLFHPNV 89 (161)
T ss_dssp CCCSTTB
T ss_pred CcccCCC
Confidence 9999986
No 34
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=99.88 E-value=2.4e-23 Score=133.73 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCC-----CCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecc
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKG-----DNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWN 74 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~-----~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~ 74 (78)
.+.+||++|+++|++++++|+++.+.+ +|+++ .++ |++|||+||.|+++|.||++||++||+| +++||
T Consensus 4 ~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 83 (157)
T 2gjd_A 4 LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYH 83 (157)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCcc
Confidence 588999999999999999999998753 37876 433 9999999999999999999999999999 59999
Q ss_pred ccC
Q psy3659 75 FSL 77 (78)
Q Consensus 75 ~~~ 77 (78)
+|+
T Consensus 84 Pnv 86 (157)
T 2gjd_A 84 PNV 86 (157)
T ss_dssp TTB
T ss_pred CCC
Confidence 986
No 35
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.88 E-value=3e-23 Score=137.51 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcCCC-------------CCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 7 TSAKRIQKELAEITLDPP-------------PNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~-------------~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
.+.+||++|+++|+++++ .||.+.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 478999999999999886 79999998889987 433 9999999999999999999999999999
Q ss_pred ---eeeccccC
Q psy3659 70 ---ERFWNFSL 77 (78)
Q Consensus 70 ---~~~w~~~~ 77 (78)
++|||+|+
T Consensus 112 ~F~T~i~HPNI 122 (193)
T 2f4z_A 112 KFVTKIWHPNI 122 (193)
T ss_dssp EESSCCCBTTB
T ss_pred EEecCCccCCC
Confidence 59999987
No 36
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=99.88 E-value=5.3e-23 Score=136.53 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcC---CCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 7 TSAKRIQKELAEITLD---PPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~---~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
.+.+||++|+++|+++ ++.||++.+.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 84 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCC
Confidence 4799999999999987 3679999999999988 443 9999999999999999999999999999 5999998
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 85 v 85 (201)
T 3k9o_A 85 I 85 (201)
T ss_dssp B
T ss_pred C
Confidence 6
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.88 E-value=8.9e-23 Score=133.86 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=65.2
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCeEEc-cCCCCCCe-eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccc
Q psy3659 3 KALSTSAKRIQKELAEITLDPPPNCSAG-PKGDNPGI-PCT--TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNF 75 (78)
Q Consensus 3 ~~~~~~~~Rl~kEl~~l~~~~~~~i~~~-p~~~nl~~-~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~ 75 (78)
++.+.+.+||++|+++| ++++|+++. ++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+
T Consensus 22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP 99 (180)
T 2nvu_C 22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP 99 (180)
T ss_dssp CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccC
Confidence 34678999999999999 477899997 78889988 343 9999999999999999999999999999 599999
Q ss_pred cC
Q psy3659 76 SL 77 (78)
Q Consensus 76 ~~ 77 (78)
|+
T Consensus 100 NV 101 (180)
T 2nvu_C 100 NI 101 (180)
T ss_dssp TB
T ss_pred CC
Confidence 86
No 38
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.88 E-value=1.4e-22 Score=133.91 Aligned_cols=74 Identities=12% Similarity=0.327 Sum_probs=66.0
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCeEEc----cCCCCCC---e-eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc--
Q psy3659 2 SKALSTSAKRIQKELAEITLDPPPNCSAG----PKGDNPG---I-PCT--TTRARYALDIFTVKQGLRYHFCLRPERN-- 69 (78)
Q Consensus 2 ~~~~~~~~~Rl~kEl~~l~~~~~~~i~~~----p~~~nl~---~-~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v-- 69 (78)
+++++.+.+||++|+++|+ .++++++. ++++|++ + .++ |.+|||+||.|+++|.||++||++||+|
T Consensus 24 ~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 24 QPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp SCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred CCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 3567889999999999998 67899887 8888998 7 433 8999999999999999999999999999
Q ss_pred -eeeccccC
Q psy3659 70 -ERFWNFSL 77 (78)
Q Consensus 70 -~~~w~~~~ 77 (78)
+++||+|+
T Consensus 102 ~t~i~HPnV 110 (190)
T 3o2u_A 102 LKKIFHPNI 110 (190)
T ss_dssp CSCCCCTTB
T ss_pred ecCcccCCC
Confidence 59999986
No 39
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.88 E-value=3.6e-23 Score=132.42 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEcc-CCCCCCe-eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGP-KGDNPGI-PCT--TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p-~~~nl~~-~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+||++|+++|++++++|+.+.+ +++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+++
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 79 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI 79 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccC
Confidence 5679999999999999999998654 6678987 443 9999999999999999999999999999 59999986
No 40
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=99.87 E-value=2.1e-23 Score=140.17 Aligned_cols=71 Identities=18% Similarity=0.282 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCC-CCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDN-PGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~n-l~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
++.+||++|+++|++++++||++.+.++| +++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 46899999999999999999999997764 545 443 9999999999999999999999999999 59999987
No 41
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=99.87 E-value=3.8e-22 Score=136.77 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcC---CCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecccc
Q psy3659 7 TSAKRIQKELAEITLD---PPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFS 76 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~---~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~ 76 (78)
.+.+||++|+++|+++ ++.||++.+.++|+++ .++ |++|||+||.|+|+|.||++||++||+| ++|||+|
T Consensus 57 ~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 136 (253)
T 3e46_A 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 136 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCC
Confidence 5899999999999987 4689999999999988 433 9999999999999999999999999999 5999998
Q ss_pred C
Q psy3659 77 L 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 137 V 137 (253)
T 3e46_A 137 I 137 (253)
T ss_dssp B
T ss_pred c
Confidence 7
No 42
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=131.59 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCC-eEEcc-CCCC--CCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecc
Q psy3659 6 STSAKRIQKELAEITLDPPPN-CSAGP-KGDN--PGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWN 74 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~-i~~~p-~~~n--l~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~ 74 (78)
..+.+||++|+++|++++++| +.+.+ +++| +++ .++ |++|||+||.|+++|.||++||++||+| +++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 458899999999999998888 67776 4554 776 443 9999999999999999999999999999 59999
Q ss_pred ccC
Q psy3659 75 FSL 77 (78)
Q Consensus 75 ~~~ 77 (78)
+++
T Consensus 114 PNV 116 (170)
T 2hlw_A 114 NGV 116 (170)
T ss_dssp SSB
T ss_pred CCE
Confidence 987
No 43
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.86 E-value=5.7e-22 Score=129.05 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhc-C-C------CC---CeEEcc-CCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc-
Q psy3659 7 TSAKRIQKELAEITL-D-P------PP---NCSAGP-KGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN- 69 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~-~-~------~~---~i~~~p-~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v- 69 (78)
.+.+||++|+++|++ + + +. ++.+.+ +++|+++ .++ |++|||+||.|+|+|.||++||++||+|
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 85 (172)
T 2y9m_A 6 TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 85 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEE
Confidence 589999999999998 4 3 33 466777 7789987 343 9999999999999999999999999999
Q ss_pred --e-eeccccC
Q psy3659 70 --E-RFWNFSL 77 (78)
Q Consensus 70 --~-~~w~~~~ 77 (78)
+ ++||+|+
T Consensus 86 f~t~~i~HPni 96 (172)
T 2y9m_A 86 FMQNNILHCNV 96 (172)
T ss_dssp ECTTSCCCTTE
T ss_pred EeeCCeecCCC
Confidence 6 9999987
No 44
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.86 E-value=4.4e-22 Score=143.07 Aligned_cols=72 Identities=29% Similarity=0.551 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.|.+||++|+++|++++++|+++.|.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 80 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence 468999999999999999999999999999987 343 9999999999999999999999999999 59999987
No 45
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=99.85 E-value=1.2e-22 Score=129.99 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
++.+||+||++++.++ |+++.+.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 76 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNV 76 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcC
Confidence 4678999999999874 6788888889987 443 9999999999999999999999999999 59999987
No 46
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.85 E-value=1.6e-21 Score=128.51 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
.+.+.+||++|+++|++++++||.+.++++|+++ .++ |++|||+||.|+|+|.||++||++||+|
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v 80 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSI 80 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcc
Confidence 3558999999999999999999999998889987 343 9999999999999999999999999999
No 47
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.84 E-value=5.8e-22 Score=128.37 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCC------------CCCeEEccCCCCCCe-eee---cCCCCCC--CCeEEEEEEcCCCCCCCCCc
Q psy3659 7 TSAKRIQKELAEITLDP------------PPNCSAGPKGDNPGI-PCT---TTRARYA--LDIFTVKQGLRYHFCLRPER 68 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~------------~~~i~~~p~~~nl~~-~~~---P~~tpYe--gg~f~l~i~fp~~YP~~PP~ 68 (78)
.+.+||++|+++|++++ +.++.+.++++|+++ .++ |++|||+ ||.|+++|.||++||++||+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 47899999999999977 678999998899988 443 9999999 99999999999999999999
Q ss_pred c---eeeccccC
Q psy3659 69 N---ERFWNFSL 77 (78)
Q Consensus 69 v---~~~w~~~~ 77 (78)
| +++||+++
T Consensus 88 v~f~t~i~HPnv 99 (167)
T 4ds2_A 88 VRFVTPVYSPLV 99 (167)
T ss_dssp EEESSCCCCSSC
T ss_pred EEEeCCcccccC
Confidence 9 59999986
No 48
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=126.91 Aligned_cols=67 Identities=6% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+||++|+++|.+ .|+++.+. +|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV 98 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNI 98 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcC
Confidence 478999999999985 47778776 56766 443 9999999999999999999999999999 59999986
No 49
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.83 E-value=6e-21 Score=124.30 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
.+.+||++|+++|++++. ++ +.++|+++ .++ |++|||+||.|+|+|.||++||++||+| +++||+|+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi 85 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV 85 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccC
Confidence 568999999999999873 44 34678887 443 9999999999999999999999999999 59999987
No 50
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=129.31 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCC----eEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---ee---
Q psy3659 6 STSAKRIQKELAEITLDPPPN----CSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ER--- 71 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~----i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~--- 71 (78)
..+.+||++|+++|.++++++ +.+.++++|++. .++ |++|||+||.|+|+|.||++||++||+| ++
T Consensus 75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~ 154 (323)
T 3ceg_A 75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCC
Confidence 468999999999999988775 445677888887 333 9999999999999999999999999999 46
Q ss_pred --eccccC
Q psy3659 72 --FWNFSL 77 (78)
Q Consensus 72 --~w~~~~ 77 (78)
+||+|+
T Consensus 155 ~~ifHPNV 162 (323)
T 3ceg_A 155 SVRFNPNL 162 (323)
T ss_dssp TCCCBTTB
T ss_pred cccccCCC
Confidence 999986
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.80 E-value=2.3e-20 Score=122.97 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhcCC---CCCeEEccCCCCCCe-eee---c-CCCCCCC-----------CeEEEEEEcCCCCCCCC
Q psy3659 6 STSAKRIQKELAEITLDP---PPNCSAGPKGDNPGI-PCT---T-TRARYAL-----------DIFTVKQGLRYHFCLRP 66 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~---~~~i~~~p~~~nl~~-~~~---P-~~tpYeg-----------g~f~l~i~fp~~YP~~P 66 (78)
+.+.+||++|+++|++++ +.++++.+.++|+++ .++ | ++|||+| |.|+|+|.||++||++|
T Consensus 26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~P 105 (186)
T 1zuo_A 26 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP 105 (186)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCC
Confidence 458999999999999988 678999998899987 443 6 8999998 89999999999999999
Q ss_pred Ccc---eeecccc
Q psy3659 67 ERN---ERFWNFS 76 (78)
Q Consensus 67 P~v---~~~w~~~ 76 (78)
|+| +++||++
T Consensus 106 P~V~f~tpi~hPn 118 (186)
T 1zuo_A 106 PFVRVVLPVLSGG 118 (186)
T ss_dssp CEEEEEESCEEST
T ss_pred CeEEEeCCccCCC
Confidence 999 4889883
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.59 E-value=3e-16 Score=102.06 Aligned_cols=65 Identities=6% Similarity=-0.024 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCC----------eEEEEEEcCCCCCCCCCcce--
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALD----------IFTVKQGLRYHFCLRPERNE-- 70 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg----------~f~l~i~fp~~YP~~PP~v~-- 70 (78)
...+||++|++.|.+ ++.++.+|++. .++ |++|+|+|| .|+|+|+||++||++||+|+
T Consensus 32 ~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~ 105 (172)
T 2z6o_A 32 LWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVP 105 (172)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred HHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeC
Confidence 458999999999998 35666667766 454 999999999 99999999999999999993
Q ss_pred -e-eccccC
Q psy3659 71 -R-FWNFSL 77 (78)
Q Consensus 71 -~-~w~~~~ 77 (78)
. +.|+++
T Consensus 106 ~~~~~hpnm 114 (172)
T 2z6o_A 106 ELDGKTAKM 114 (172)
T ss_dssp GGTTTCSSB
T ss_pred CCCCCCCCC
Confidence 3 677764
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=98.74 E-value=2.9e-09 Score=68.43 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEc-cCCCCCCe-eeecCCCCCCCC----------eEEEEEEcCCCCCCCCCcce
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAG-PKGDNPGI-PCTTTRARYALD----------IFTVKQGLRYHFCLRPERNE 70 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~-p~~~nl~~-~~~P~~tpYegg----------~f~l~i~fp~~YP~~PP~v~ 70 (78)
-..||..|++.|-+. +... ..++|.+. ..-|++|+|.|+ .|+|+|+||.+||++||+|+
T Consensus 35 w~~RlkeEy~alI~y----v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~ 105 (168)
T 3kpa_A 35 WTARLKEEYASLITY----VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIA 105 (168)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHHH----HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEee
Confidence 578999999988642 1111 12334444 333999999999 99999999999999999993
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=97.94 E-value=1.7e-05 Score=51.01 Aligned_cols=60 Identities=7% Similarity=-0.109 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCCCCeE----EccCCCCC----CeeeecCCCCCCCCe---EEEEEEcCCCCCCCCCcc
Q psy3659 9 AKRIQKELAEITLDPPPNCS----AGPKGDNP----GIPCTTTRARYALDI---FTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 9 ~~Rl~kEl~~l~~~~~~~i~----~~p~~~nl----~~~~~P~~tpYegg~---f~l~i~fp~~YP~~PP~v 69 (78)
.+|..+|+.++...- +++. +...+|.. .....+-.++|+||. |.+.|.||.+||++||.|
T Consensus 30 ~~~~~~dv~~~l~~y-p~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v 100 (162)
T 3r3q_A 30 GRTTFHDSLALLDNF-HSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFI 100 (162)
T ss_dssp HHHHHHHHHHHHHHC-TTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEE
T ss_pred hhHHHHHHHHHHHhC-CCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEE
Confidence 466777877775532 2222 23334433 332224449999998 899999999999999999
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=96.90 E-value=0.00063 Score=43.01 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=28.5
Q ss_pred CCCCe-eee-cCCCCCCCCeEE--EEEEcCCCCCCCCCcc
Q psy3659 34 DNPGI-PCT-TTRARYALDIFT--VKQGLRYHFCLRPERN 69 (78)
Q Consensus 34 ~nl~~-~~~-P~~tpYegg~f~--l~i~fp~~YP~~PP~v 69 (78)
.+|+. .++ | .+|+|+.|. +.|-||++||++||.|
T Consensus 51 ~~LL~l~GtIp--v~y~g~~y~iPi~Iwlp~~YP~~pP~v 88 (146)
T 3obq_A 51 RELMNLTGTIP--VPYRGNTYNIPICLWLLDTYPYNPPIC 88 (146)
T ss_dssp CEEEEEEEEEE--EECSSCEEEEEEEEECCTTTTTSCCEE
T ss_pred heEEEEEEEee--eeecCccccceEEEEeCccCCCCCCEE
Confidence 35666 555 6 889999988 5999999999999999
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.0052 Score=36.94 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCeeee-cCC-CCCCCCeEEEEEEcCCCCCCCCCcce
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGIPCT-TTR-ARYALDIFTVKQGLRYHFCLRPERNE 70 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~~~~-P~~-tpYegg~f~l~i~fp~~YP~~PP~v~ 70 (78)
.|+.+......|+..|..--+..+.+.......+...+ ++. ..-+.-.+.|.|.+|.+||..||.++
T Consensus 7 ~m~~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~ 75 (128)
T 2ebm_A 7 GMTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYE 75 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEE
T ss_pred CCCChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEE
Confidence 45566777888999887644445544322111122222 321 11123368999999999999999983
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.047 Score=33.10 Aligned_cols=66 Identities=11% Similarity=-0.110 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCC--------CCCCeeee-cCCCCCCCCeEEEEEEcCCCCCCCCCcce
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKG--------DNPGIPCT-TTRARYALDIFTVKQGLRYHFCLRPERNE 70 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~--------~nl~~~~~-P~~tpYegg~f~l~i~fp~~YP~~PP~v~ 70 (78)
|+....+...|+..|..--+..+...... ...+...+ +....=..-.+.|.|.+|.+||..||.++
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~ 82 (138)
T 2yz0_A 8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIE 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEE
T ss_pred ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEE
Confidence 56677778889999986444444432211 11122223 43221112368899999999999999983
No 58
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.56 E-value=0.083 Score=31.83 Aligned_cols=66 Identities=5% Similarity=-0.143 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCC-------CCCeeee-cCCCC-C-CCCeEEEEEEcCCCCCCCCCcc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGD-------NPGIPCT-TTRAR-Y-ALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~-------nl~~~~~-P~~tp-Y-egg~f~l~i~fp~~YP~~PP~v 69 (78)
.|+....+...|+..|..--...+....... ..+...+ +++.- - ..-.+.|.|.||.+||..||.+
T Consensus 7 ~~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i 82 (137)
T 1ukx_A 7 GMESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEI 82 (137)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCC
T ss_pred CCcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcE
Confidence 3556677788899888764444454432211 1112333 43210 0 1136899999999999999998
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.95 E-value=0.034 Score=33.29 Aligned_cols=61 Identities=8% Similarity=-0.094 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCCCeEEccCCC--CCCe--eee-cCCC-CC--CCCeEEEEEEcCCCCCCCCCcc
Q psy3659 9 AKRIQKELAEITLDPPPNCSAGPKGD--NPGI--PCT-TTRA-RY--ALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 9 ~~Rl~kEl~~l~~~~~~~i~~~p~~~--nl~~--~~~-P~~t-pY--egg~f~l~i~fp~~YP~~PP~v 69 (78)
......|+..|..--...+....... .-.. ..+ |..+ .- ..-.+.|.|.+|.+||..+|.+
T Consensus 10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i 78 (128)
T 2day_A 10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQI 78 (128)
T ss_dssp CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEE
T ss_pred HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCe
Confidence 34577888888764444454432211 1122 222 3211 11 1236899999999999999998
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.81 E-value=0.041 Score=33.00 Aligned_cols=20 Identities=5% Similarity=-0.232 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCCCCCCcc
Q psy3659 50 DIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 50 g~f~l~i~fp~~YP~~PP~v 69 (78)
-.+.|.|.+|.+||..||.+
T Consensus 56 ~~~~L~~~~p~~YP~~~P~i 75 (128)
T 2ebk_A 56 IPLELVFHLPVNYPSCLPGI 75 (128)
T ss_dssp CEEEEEEEECSSTTSSCCCC
T ss_pred eEEEEEEECCCCCCCCCCeE
Confidence 36899999999999999998
No 61
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.67 E-value=0.076 Score=32.84 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCCCCCCcce
Q psy3659 51 IFTVKQGLRYHFCLRPERNE 70 (78)
Q Consensus 51 ~f~l~i~fp~~YP~~PP~v~ 70 (78)
.+.|.|.+|.+||..||.++
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~ 93 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEIT 93 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCE
T ss_pred eEEEEEECCCCCCCCCCeEE
Confidence 58899999999999999984
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.46 E-value=0.084 Score=32.92 Aligned_cols=20 Identities=0% Similarity=-0.147 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCCCCCCcce
Q psy3659 51 IFTVKQGLRYHFCLRPERNE 70 (78)
Q Consensus 51 ~f~l~i~fp~~YP~~PP~v~ 70 (78)
.+.|.|.+|.+||-.+|.+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~ 95 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLF 95 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEE
T ss_pred eEEEEEEcCCCCCCCCCcEE
Confidence 79999999999999999983
No 63
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=74.77 E-value=2.8 Score=27.23 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEccCCCCCCe-eeecCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 10 KRIQKELAEITLDPPPNCSAGPKGDNPGI-PCTTTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 10 ~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
.+|.+|+.++--+.... .+.++.. .+...++ .|....++|.++.+||.+||.+
T Consensus 4 ~~li~Ei~~iGW~~l~~-----id~~~~~i~l~~~D~--~gR~H~l~v~l~~~yp~~~P~~ 57 (186)
T 3zqs_A 4 SSLIEEIGTLGWDKLVY-----ADTCFSTIKLKAEDA--SGREHLITLKLKAKYPAESPDY 57 (186)
T ss_dssp CSHHHHHHHHCGGGEEE-----ECTTSSEEEEEEECT--TSCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHhCCceeee-----ecCCccEEEEEEEeC--CCCeEEEEEEECCCCCCCCCee
Confidence 36788888885443211 2345555 3332221 2578999999999999999988
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=63.09 E-value=7.8 Score=16.93 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCe
Q psy3659 7 TSAKRIQKELAEITLDPPPNC 27 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i 27 (78)
+-..||.-|+...+.+++.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 346788899999999988764
No 65
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=53.87 E-value=12 Score=18.33 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHhc
Q psy3659 5 LSTSAKRIQKELAEITL 21 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~ 21 (78)
|.+-.+||..|++.+.+
T Consensus 26 Mv~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 26 LKSKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 66788999999998753
No 66
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=40.03 E-value=26 Score=15.23 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHh
Q psy3659 6 STSAKRIQKELAEIT 20 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~ 20 (78)
...++.|.+|+++-+
T Consensus 7 tnlqkkirkelkqrq 21 (26)
T 1m46_B 7 TNLQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788999988643
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=39.73 E-value=19 Score=23.41 Aligned_cols=22 Identities=0% Similarity=-0.213 Sum_probs=19.7
Q ss_pred CCCeEEEEEEcCCCCCC-----CCCcc
Q psy3659 48 ALDIFTVKQGLRYHFCL-----RPERN 69 (78)
Q Consensus 48 egg~f~l~i~fp~~YP~-----~PP~v 69 (78)
+.|.|.++-.+|--||. .||.|
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HI 135 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHI 135 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEE
Confidence 46999999999999998 78888
No 68
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=37.28 E-value=20 Score=20.52 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q psy3659 7 TSAKRIQKELAEI 19 (78)
Q Consensus 7 ~~~~Rl~kEl~~l 19 (78)
+-.||||||++=|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 4589999998866
No 69
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=32.97 E-value=17 Score=15.85 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.9
Q ss_pred EcCCCC
Q psy3659 57 GLRYHF 62 (78)
Q Consensus 57 ~fp~~Y 62 (78)
++|++|
T Consensus 6 tlpeny 11 (26)
T 2jrw_A 6 TLPENY 11 (26)
T ss_dssp CCSSSS
T ss_pred ccchhh
Confidence 445554
No 70
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=28.64 E-value=44 Score=21.93 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=22.1
Q ss_pred cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 42 TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 42 P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
|.+++..++.|.+.+.+|.+|--+||+=
T Consensus 117 p~~~~~~~~~~tvsF~lP~~~q~~pP~P 144 (227)
T 4b0y_A 117 PGSGPFSESTITISLYIPSEQQFDPPRP 144 (227)
T ss_dssp CCC--CCCEEEEEEEECCGGGSSSCCCB
T ss_pred cCCCcccCceEEEEEEcChhhccCCCCC
Confidence 6777888899999999999997777753
No 71
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=28.57 E-value=40 Score=17.63 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=8.4
Q ss_pred EEEEcCCCCCC
Q psy3659 54 VKQGLRYHFCL 64 (78)
Q Consensus 54 l~i~fp~~YP~ 64 (78)
++-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 45678999984
No 72
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=28.12 E-value=35 Score=18.88 Aligned_cols=12 Identities=0% Similarity=-0.224 Sum_probs=10.6
Q ss_pred CCeEEEEEEcCC
Q psy3659 49 LDIFTVKQGLRY 60 (78)
Q Consensus 49 gg~f~l~i~fp~ 60 (78)
+|.|+|.|++|.
T Consensus 19 dGdYrL~itcpk 30 (76)
T 2rp4_A 19 DGDYRLAITCPN 30 (76)
T ss_dssp TTBEEEEEEESC
T ss_pred CCceEEEEEeCc
Confidence 689999999986
No 73
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=26.40 E-value=47 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCCCCCCcc
Q psy3659 51 IFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 51 ~f~l~i~fp~~YP~~PP~v 69 (78)
.+...|.|+..|. .+|+|
T Consensus 30 ~~~~~V~F~~~F~-~~P~V 47 (101)
T 2ccv_A 30 ELAKNITFASPYC-RPPVV 47 (101)
T ss_dssp EEEEEEECSSCCS-SCCEE
T ss_pred EEEEEeEeCcccC-CCCEE
Confidence 5889999999999 69999
No 74
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=24.50 E-value=24 Score=20.37 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=14.1
Q ss_pred CCCeEEEEEEcCCCCCCC
Q psy3659 48 ALDIFTVKQGLRYHFCLR 65 (78)
Q Consensus 48 egg~f~l~i~fp~~YP~~ 65 (78)
.|..+.+.|.||++|.-.
T Consensus 79 ~Ge~~~v~i~fP~~Yg~~ 96 (113)
T 1hxv_A 79 VNQKKTLALTFPSDYHVK 96 (113)
T ss_dssp SSEEEEECCCCCTTSSSS
T ss_pred CCCEEEEEEeCchhhCcC
Confidence 466788888999998754
No 75
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=23.03 E-value=21 Score=20.38 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=14.9
Q ss_pred eEEEEEEcCCCCCCCCCcc
Q psy3659 51 IFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 51 ~f~l~i~fp~~YP~~PP~v 69 (78)
.|+-+-.+|.+||+.+|.-
T Consensus 48 eYR~kwGlp~dyPmvA~~y 66 (87)
T 2jsp_A 48 EYREKWDLPVDYPMVAPAY 66 (87)
T ss_dssp HHHHHTTCGGGCCSBCTTT
T ss_pred HHHHHhCCCCCCcccCHHH
Confidence 3555667899999999876
No 76
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=20.69 E-value=31 Score=22.97 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=18.8
Q ss_pred CCCeEEEEEEcCCCCC-------CCCCcc
Q psy3659 48 ALDIFTVKQGLRYHFC-------LRPERN 69 (78)
Q Consensus 48 egg~f~l~i~fp~~YP-------~~PP~v 69 (78)
+.|.|.|+-.+|--|| ..||.|
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHI 162 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHI 162 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceE
Confidence 3689999999999998 478877
No 77
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=20.29 E-value=82 Score=19.41 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=20.2
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCeEE
Q psy3659 2 SKALSTSAKRIQKELAEITLDPPPNCSA 29 (78)
Q Consensus 2 ~~~~~~~~~Rl~kEl~~l~~~~~~~i~~ 29 (78)
+....++.+|++|=|..+.+.....+.+
T Consensus 38 kTpf~S~vkRi~KlL~~~~k~~~~eV~v 65 (140)
T 3iab_B 38 TTPYVSALKRINKFLDSVHKQGSSYVAV 65 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCchHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 4557889999999999876664444444
Done!