RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3659
(78 letters)
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics
consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL
conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 55.1 bits (133), Expect = 2e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
SK LSTSAKRIQKELA+ITLDPPPNCSAGPKGDN
Sbjct: 43 SKLLSTSAKRIQKELADITLDPPPNCSAGPKGDN 76
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 53.5 bits (129), Expect = 5e-11
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
L + RIQKEL +PP NC+ N
Sbjct: 15 KYNLGNANYRIQKELNNFLKNPPINCTIDVHPSN 48
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 53.0 bits (128), Expect = 5e-11
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + RIQKEL +PP NC+ +N
Sbjct: 3 NMGNANYRIQKELHNFLNNPPINCTLDVHPNN 34
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 55.3 bits (133), Expect = 5e-11
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + KRI KEL ++ DPP CSAGP GD+
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDD 31
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 53.4 bits (129), Expect = 8e-11
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
SK + +KR+Q+EL + + P +A P GDN
Sbjct: 4 SKERHSVSKRLQQELRTLLMSGDPGITAFPDGDN 37
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 52.7 bits (127), Expect = 2e-10
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNCSAGPKGDN 35
A KRI KEL +++ DPP NCSAGP GD+
Sbjct: 14 RENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDD 49
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 52.7 bits (127), Expect = 2e-10
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
S + KRI KEL ++ DPP CSAGP GD+
Sbjct: 18 SMALKRIHKELNDLARDPPAQCSAGPVGDD 47
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 52.2 bits (126), Expect = 2e-10
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 6 STSA-KRIQKELAEITLDPPPNCSAGPKGDN 35
S A KRIQKEL ++ DPP CSAGP GD+
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDD 32
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 52.3 bits (126), Expect = 2e-10
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ +S K + KE+AE+ + P C N
Sbjct: 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN 42
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 52.0 bits (125), Expect = 3e-10
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
A KR+Q+EL + + SA P+ DN
Sbjct: 25 GAARGPVGKRLQQELMTLMMSGDKGISAFPESDN 58
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 52.4 bits (126), Expect = 3e-10
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDNP 36
+ LS + R++++L + L P + D+
Sbjct: 23 IQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSA 58
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 51.5 bits (124), Expect = 3e-10
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ KRI KE ++ DP P +A P DN
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDN 33
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 52.1 bits (125), Expect = 3e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+A +T+ +R++++ I DP P A P N
Sbjct: 9 KRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSN 42
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 51.5 bits (124), Expect = 5e-10
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + + KE+ +T DPP P ++
Sbjct: 7 VENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEED 41
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 51.1 bits (123), Expect = 5e-10
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
MS + + KR+ ++ + DPP S P+ +N
Sbjct: 1 MS---TPARKRLMRDFKRLQQDPPAGISGAPQDNN 32
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 50.7 bits (122), Expect = 6e-10
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 4 ALSTSA-KRIQKELAEITLDPPPNCSAGPKGDN 35
A S +RI KE + +P P A P N
Sbjct: 1 AGSAGLPRRIIKETQRLLAEPVPGIKAEPDESN 33
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium,
SGC, ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 51.7 bits (124), Expect = 7e-10
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ S R+QKEL +I + A K N
Sbjct: 17 LYFQGSKELLRLQKELKDIENENVQEIDAHIKDSN 51
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 50.4 bits (121), Expect = 1e-09
Identities = 2/35 (5%), Positives = 12/35 (34%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + ++ ++ + +A P ++
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSED 51
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 50.0 bits (120), Expect = 1e-09
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ R+ KEL ++ PPP D
Sbjct: 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDA 32
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 49.9 bits (120), Expect = 1e-09
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 9 AKRIQKELAEITLDPPPNCSAGPKGDN 35
+RI KE + +PPP A P +N
Sbjct: 3 PRRITKETQNLANEPPPGIMAVPVPEN 29
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 50.0 bits (120), Expect = 1e-09
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
MS + + +R+ ++ + D PP SA P DN
Sbjct: 1 MS---TPARRRLMRDFKRMKEDAPPGVSASPLPDN 32
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 50.1 bits (120), Expect = 2e-09
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
S + + ++++LAE+ +P SAG DN
Sbjct: 12 SGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDN 45
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo
sapiens} SCOP: d.20.1.1
Length = 136
Score = 49.6 bits (119), Expect = 2e-09
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPK--GDN 35
++++ KR+QKEL + DPPP + K ++
Sbjct: 17 RGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNS 52
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 50.6 bits (121), Expect = 2e-09
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
S+ AKRI KE+ + DP + + ++
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSES 30
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 49.7 bits (119), Expect = 2e-09
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
A R+++EL + +PPP + D
Sbjct: 3 MQRASRLKRELHMLATEPPPGITCWQDKDQ 32
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 49.2 bits (118), Expect = 3e-09
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 7 TSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ AKRI KE+ + DP + + ++
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSES 29
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 48.4 bits (116), Expect = 5e-09
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 7 TSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+++R+ KEL EI N +
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEA 30
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 47.7 bits (114), Expect = 1e-08
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPG 37
MS S +R+Q+E + D P A P G
Sbjct: 1 MS---SLCLQRLQEERKKWRKDHPFGFYAKPVKKADG 34
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 47.0 bits (112), Expect = 2e-08
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
MS T+ KR+ KEL ++ D PP AGPK +N
Sbjct: 1 MS---KTAQKRLLKELQQLIKDSPPGIVAGPKSEN 32
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 46.6 bits (111), Expect = 3e-08
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
T+ KR+ E ++TL+PP AGP +
Sbjct: 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEE 31
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 46.7 bits (111), Expect = 4e-08
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+S K + EL + +P +
Sbjct: 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEG 35
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 45.0 bits (107), Expect = 1e-07
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPG 37
MS + R+ +E D P A P + G
Sbjct: 4 MS---GIALSRLAQERKAWRKDHPFGFVAVPTKNPDG 37
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 45.0 bits (107), Expect = 1e-07
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPG 37
S R+Q+E + D P A P + G
Sbjct: 9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDG 40
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 43.4 bits (103), Expect = 5e-07
Identities = 1/27 (3%), Positives = 6/27 (22%)
Query: 9 AKRIQKELAEITLDPPPNCSAGPKGDN 35
+ ++ + T +
Sbjct: 1 GTSLTRKQCDFTKLIMAGYDLELNNGS 27
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 42.8 bits (101), Expect = 9e-07
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNCSAGPKGDN 35
S + R+ +EL E + D+
Sbjct: 18 GSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDD 53
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 42.3 bits (100), Expect = 1e-06
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 2 SKALSTSA-KRIQKELAEITLDPP---PNCSAGPKGDN 35
+ A++ A +RI++E E+ +N
Sbjct: 2 AMAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 39
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 42.4 bits (100), Expect = 2e-06
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 1 MSKALSTSAKRIQKELAEIT---LDPPPNCSAGPKGDN 35
M+ + + +RI++E E+ +N
Sbjct: 2 MA---NIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 36
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 40.9 bits (96), Expect = 5e-06
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNCSAGPKGDN 35
K + R+ +EL E + D+
Sbjct: 28 HCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDD 63
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating
tgtwinscan_2721, structural genomics, structural
genomics consortium, SGC; 2.11A {Toxoplasma gondii}
SCOP: d.20.1.1
Length = 193
Score = 40.9 bits (96), Expect = 6e-06
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 13/46 (28%)
Query: 3 KALSTSAKRIQKELAEI-------------TLDPPPNCSAGPKGDN 35
+ R+ KELA+I T SA G +
Sbjct: 28 RGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGD 73
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 40.0 bits (94), Expect = 7e-06
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPP-NCSAGPKGDN 35
MSK R+ +EL + P +CS G +
Sbjct: 2 MSKV--PRNFRLLEELEKGEKGFGPESCSYGLADSD 35
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 40.3 bits (94), Expect = 1e-05
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN---CSAGPKGDN 35
+ + +RI++E E+ + +N
Sbjct: 51 EFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 88
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 39.7 bits (93), Expect = 1e-05
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
SK S + RIQK++ E+ L + S D+
Sbjct: 21 SKKASAAQLRIQKDINELNLPKTCDISF-SDPDD 53
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 38.1 bits (89), Expect = 5e-05
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPNCSAG 30
MS S +R+ ++ ++ G
Sbjct: 20 MSSP-SPGKRRMDTDVIKLIESKHEVTILG 48
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 37.7 bits (87), Expect = 8e-05
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGP 31
+ A+R+ +E ++ P + S+
Sbjct: 75 AARARRLAQEAVTLSTSLPLSSSSSV 100
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 37.3 bits (87), Expect = 9e-05
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAG-PKGDN 35
S + RIQK++ E L+ P C D+
Sbjct: 5 SAAQLRIQKDINE--LNLPKTCDISFSDPDD 33
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 36.9 bits (86), Expect = 1e-04
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPP-NCSAGPKGDN 35
+ + + R+ EL S G + +
Sbjct: 15 YFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESAD 50
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 35.9 bits (83), Expect = 3e-04
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 6 STSAKRIQKELAEITLD----PPPNCSAGPKGDNPGIP 39
+ S KRI K+L + + N S P
Sbjct: 7 NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSV 44
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A
{Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 34.5 bits (79), Expect = 0.001
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNC---SAGPKGDN 35
+ + S A R+ KEL +I S D+
Sbjct: 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDS 58
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 32.0 bits (73), Expect = 0.008
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 14/46 (30%)
Query: 1 MSKALSTSAKRIQKELAEI---------TLDPPPNC--SAGPKGDN 35
M+ T RI KE I +P S P +
Sbjct: 3 MA---DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET 45
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 28.9 bits (65), Expect = 0.10
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 1 MSKALSTSA-KRIQKELAEITLDPPPNCSAGPKGDN 35
MS A + + +R + + + P
Sbjct: 5 MSGAGNLRSNRRREMDYMRL---CNSTRKVYPSDTV 37
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 25.7 bits (57), Expect = 1.6
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 24 PPNCSAGPKGDNPGIPCTTTRARYA-LDIFTVKQGLRYHF 62
+CS K D+ PC + IF V Y
Sbjct: 177 QFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRI 216
>3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human
adenovirus 16}
Length = 220
Score = 25.5 bits (55), Expect = 1.7
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 20 TLDPPPNCSAGPKGDNPGIPCT 41
P NC D+P T
Sbjct: 33 GAKPSANCVIKEGEDSPDCKLT 54
>2wjn_C Photosynthetic reaction center cytochrome C subun;
bacteriochlorophyll, lipidic-sponge phase,
photosynthesis, R center, electron transport, cell
membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A
{Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C*
2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C*
3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C*
1vrn_C* 3t6d_C*
Length = 336
Score = 24.4 bits (52), Expect = 5.0
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 9 AKRIQKELAEITLDPPPNCSAGPKGDNPGIPCTT 42
+ + P G +G+ P C T
Sbjct: 274 VRDLNMNYLAPLNASLPASRLGRQGEAPQADCRT 307
>1h7z_A Adenovirus fibre protein; cell receptor recognition, receptor;
1.6A {Human adenovirus type 3} SCOP: b.21.1.1
Length = 194
Score = 23.9 bits (51), Expect = 7.0
Identities = 6/22 (27%), Positives = 6/22 (27%)
Query: 20 TLDPPPNCSAGPKGDNPGIPCT 41
P NC NP T
Sbjct: 11 GPKPEANCIIEYGKQNPDSKLT 32
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 23.5 bits (50), Expect = 9.4
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 21 LDPPPNCSAGPKGDNPGIPCTTTRARYALDIFTVKQGLRYH 61
+PP N + + + R L + L H
Sbjct: 18 FNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVH 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.427
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,227,864
Number of extensions: 56764
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 55
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)