RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3659
(78 letters)
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 50.2 bits (119), Expect = 5e-10
Identities = 30/30 (100%), Positives = 30/30 (100%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
STSAKRIQKELAEITLDPPPNCSAGPKGDN
Sbjct: 1 STSAKRIQKELAEITLDPPPNCSAGPKGDN 30
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 45.9 bits (108), Expect = 2e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
SK + +KR+Q+EL + + P +A P GDN
Sbjct: 4 SKERHSVSKRLQQELRTLLMSGDPGITAFPDGDN 37
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 43.6 bits (102), Expect = 1e-07
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGIPCTTTRARYALDIFTVKQGLRYHFCLRP 66
T+ +R++++ I DP P A P N R + F
Sbjct: 1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 60
Query: 67 ERNERFWNF 75
Sbjct: 61 PFKPPSIYM 69
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 42.8 bits (100), Expect = 3e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ S +R+ ++ ++ DPP S P DN
Sbjct: 2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDN 31
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 41.9 bits (98), Expect = 4e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI 38
+++ KR+QKEL + DPPP + K I
Sbjct: 1 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSI 34
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 42.5 bits (99), Expect = 4e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
T+ KR+ KEL ++ D PP AGPK +N
Sbjct: 2 KTAQKRLLKELQQLIKDSPPGIVAGPKSEN 31
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 42.1 bits (98), Expect = 5e-07
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ KRIQKEL ++ DPP CSAGP GD+
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDD 29
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 42.0 bits (98), Expect = 6e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + +R+ ++ + D PP SA P DN
Sbjct: 2 TPARRRLMRDFKRMKEDAPPGVSASPLPDN 31
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 40.8 bits (95), Expect = 8e-07
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 11 RIQKELAEITLDPPPNCSAGPKGDNP 36
RIQKEL +PP NC+ +N
Sbjct: 2 RIQKELHNFLNNPPINCTLDVHPNNI 27
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 41.3 bits (96), Expect = 9e-07
Identities = 2/30 (6%), Positives = 12/30 (40%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + ++ ++ + +A P ++
Sbjct: 3 GRAYLLLHRDFCDLKENNYKGITAKPVSED 32
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 40.9 bits (95), Expect = 1e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDNP 36
KR+Q+EL + + SA P+ DN
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAFPESDNL 30
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 40.9 bits (95), Expect = 2e-06
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
S+ ++K+LA++ P SAG DN
Sbjct: 1 SSLLLKKQLADMRRVPVDGFSAGLVDDN 28
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 40.6 bits (94), Expect = 2e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
A R+++EL + +PPP + D
Sbjct: 3 RASRLKRELHMLATEPPPGITCWQDKDQ 30
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 40.5 bits (94), Expect = 2e-06
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDN 35
+ + KE+ +T DPP P ++
Sbjct: 9 RLVYKEVTTLTADPPDGIKVFPNEED 34
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 40.1 bits (93), Expect = 3e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ KRI KE ++ DP P +A P DN
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDN 31
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 39.4 bits (91), Expect = 5e-06
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 9 AKRIQKELAEITLDPPPNCSAGPKGDN 35
++R+ KEL EI N +
Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEA 27
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 39.4 bits (91), Expect = 5e-06
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDN 35
+RI KE + +P P A P N
Sbjct: 5 RRIIKETQRLLAEPVPGIKAEPDESN 30
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 39.4 bits (91), Expect = 5e-06
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ R+ KEL ++ PPP D
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLSSDDA 28
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 39.4 bits (91), Expect = 6e-06
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 7 TSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ AKRI KE+ + DP + + ++
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSES 29
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 39.4 bits (91), Expect = 6e-06
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDNPG 37
R+ +E D P A P + G
Sbjct: 5 SRLAQERKAWRKDHPFGFVAVPTKNPDG 32
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 38.9 bits (90), Expect = 7e-06
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 11 RIQKELAEITLDPPPNCSAGPKGDN 35
++++LAE+ +P SAG DN
Sbjct: 3 LLRRQLAELNKNPVEGFSAGLIDDN 27
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 35.4 bits (81), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGD 34
S + RIQK++ E+ L + S D
Sbjct: 2 SAAQLRIQKDINELNLPKTCDISFSDPDD 30
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 33.7 bits (76), Expect = 7e-04
Identities = 7/71 (9%), Positives = 16/71 (22%), Gaps = 11/71 (15%)
Query: 6 STSAKRIQKELAEITLDPPPNC---SAGPKGDN--------PGIPCTTTRARYALDIFTV 54
++ R+ KEL +I S D+ + + +
Sbjct: 3 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 62
Query: 55 KQGLRYHFCLR 65
+
Sbjct: 63 EGIEYILLNFS 73
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25
kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 32.5 bits (73), Expect = 0.002
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN---CSAGPKGDN 35
M+ + + +RI++E E+ + +N
Sbjct: 1 MA---NIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 35
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 31.3 bits (70), Expect = 0.005
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 13/39 (33%)
Query: 10 KRIQKELAEI-------------TLDPPPNCSAGPKGDN 35
R+ KELA+I T SA G +
Sbjct: 4 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGD 42
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 28.1 bits (62), Expect = 0.065
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 9 AKRIQKELAEITLDPPP-NCSAGPKGDN 35
R+ +EL + P +CS G +
Sbjct: 6 NFRLLEELEKGEKGFGPESCSYGLADSD 33
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 27.4 bits (60), Expect = 0.14
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAG 30
S +R+ ++ ++ G
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVTILG 26
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 25.7 bits (56), Expect = 0.53
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 9 AKRIQKELAEITLDPPPNCSAGPKGD 34
R+ +EL E + D
Sbjct: 7 NFRLLEELEEGQKGVGDGTVSWGLED 32
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 24.7 bits (53), Expect = 1.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 10 KRIQKELAEI 19
KRI KELA I
Sbjct: 23 KRINKELANI 32
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces
[TaxId: 204285]}
Length = 181
Score = 23.5 bits (50), Expect = 2.9
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 28 SAGPKGDN---PGIPCTTTRARYALDIFTVKQGLRYHFCLRPERNERFWNFSLE 78
+A P DN G T+ G R+ + E + SL
Sbjct: 28 NAPPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLV 81
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 238
Score = 23.3 bits (50), Expect = 3.6
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 19/59 (32%)
Query: 37 GIPCTTTRARYALDIFTVKQGLRYH----------------FCL-RPERNERFWNFSLE 78
+ TT R RY +DI+ K +R L + + ++E
Sbjct: 11 DVFFTTPRGRYDIDIY--KNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIE 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.427
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,653
Number of extensions: 11706
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 33
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)