BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy366
(734 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 277 QTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKS 336
Q LE CP C +F+ L H +TH+ E+ Y C CGK +L+ H +
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR- 70
Query: 337 VHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDA 396
H K + C C KSF RA LR H+ H+ E+ + C CG SF Q L AH++ H
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 397 KLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKR 450
E +KC C + F R L++H RTH+ +PYKC C + F + +H+R
Sbjct: 131 --EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Query: 312 ERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERG 371
E+ Y C CGK + +L+ H + H K + C C KSF ++ L H+ H+ E+
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 372 FVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYK 431
+ C CG SF QR L AH++ H E + C C + F + + L +H RTH+ +PYK
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTG--EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 432 CDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHI 482
C C + F ++ H+R H+ +PY+C C SF R L H +TH
Sbjct: 136 CPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 87/183 (47%), Gaps = 4/183 (2%)
Query: 552 AKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHS 611
A+ L + Y C +CGK S + LA H + H K + C C KSF +L +H
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 612 PVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKR 671
H+ +K + C CG SF QR L +H++ + E Y C CGK F + L H +
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA--CPECGKSFSQLAHLRAHQRT 127
Query: 672 HSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTHIK 731
H+ +PYKC CG F D L Q H+ +PY C C +F AL H RTH
Sbjct: 128 HTGEKPYKCPECGKSFSRE-DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 732 SRT 734
+T
Sbjct: 187 KKT 189
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 6/176 (3%)
Query: 527 QDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVH 586
+ + Y+C +C FS + +H +TH + Y C +CGK S K L H + H
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGE--KPYKCPECGKSFSDKKDLTRHQR-TH 72
Query: 587 LKIKKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEEL 646
K + C C KSF A LR H H+ +K + C CG SF Q L +H++ + E
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 647 IYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHS 702
YK C CGK F + +L+ H + H+ +PYKC CG F D L Q H+
Sbjct: 133 PYK--CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR-DALNVHQRTHT 185
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCD 347
+CP C +F+DK+ L H +TH+ E+ Y C CGK +NL H + H K ++C
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACP 109
Query: 348 VCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILC 407
C KSF A LR H+ H+ E+ + C CG SF + L H++ H E +KC C
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG--EKPYKCPEC 167
Query: 408 DRKFHRNSKLNSHMRTHS 425
+ F R LN H RTH+
Sbjct: 168 GKSFSRRDALNVHQRTHT 185
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 4/179 (2%)
Query: 47 SQLFTGPMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQH 106
+Q P EK C +CGK F+ S LA H + H K + C CGKSF +L +H
Sbjct: 11 AQAALEPGEK-PYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 107 SFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMK 166
H+ +K + C CG SF QR+ L +H++ + E Y C CGK F + L H +
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA--CPECGKSFSQLAHLRAHQR 126
Query: 167 RHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHM 225
H+ +PYKC CG F ++ H++ + C C +F L H++ H
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 509 KCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQC 568
+C + L H T + Y C +C FS K D+ +H +TH + Y C +C
Sbjct: 26 ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE--KPYKCPEC 83
Query: 569 GKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGAS 628
GK S L H + H K ++C C KSF LA LR H H+ +K + C CG S
Sbjct: 84 GKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 629 FKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHS 673
F + L +H++ + E YK C CGK F + +L H + H+
Sbjct: 143 FSREDNLHTHQRTHTGEKPYK--CPECGKSFSRRDALNVHQRTHT 185
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDL 120
C +CGK F+ + L RH + H K + C CGKSF + L+ H H+ +K + C
Sbjct: 52 CPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 121 CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICG 180
CG SF Q + L +H++ + E YK C CGK F + +L+ H + H+ +PYKC CG
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYK--CPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 181 HGFKLNYDMLRHKQDVHSN 199
F D L Q H+
Sbjct: 169 KSFSRR-DALNVHQRTHTG 186
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRP 458
E + C C + F R+ L H RTH+ +PYKC C + F D+ H+R H+ +P
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKP 77
Query: 459 YQCTLCSASFKRSSHLKQHGKTHIKPEHDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQ 518
Y+C C SF + ++L+ H +TH T + C + C +
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTH--------TGEKPYACPE----------CGKSFSQLA 119
Query: 519 LLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTL 578
L +H T + Y C +C FS + ++ H +TH + Y C +CGK S L
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE--KPYKCPECGKSFSRRDAL 177
Query: 579 ANHIK 583
H +
Sbjct: 178 NVHQR 182
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Query: 68 FTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQ 127
F SS S+A+ + K + C CGKSF + L +H H+ +K + C CG SF
Sbjct: 4 FGSSSSVAQ--AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 128 RSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNY 187
+ L H++ + E YK C CGK F + +L H + H+ +PY C CG F
Sbjct: 62 KKDLTRHQRTHTGEKPYK--CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 188 DMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTSILLTCDQC 235
+ H++ + C C +F L H++ H C +C
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 29/191 (15%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCN 205
+ C CGK F ++ L EH + H+ +PYKC CG F D+ RH++ + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 206 LCSATFKTARGLKQHEKKHMTSILLTCDQCHSTEEAGCKCNRQLLQCSLCSETFKSKPSL 265
C +F L+ H++ H C + C ++F L
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPE--------------------CGKSFSQLAHL 121
Query: 266 RAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLC 325
RAH T +CP C +F+ + L +H +TH+ E+ Y C CGK
Sbjct: 122 RAHQR---------THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS 172
Query: 326 GASNLSLHIKS 336
L++H ++
Sbjct: 173 RRDALNVHQRT 183
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 30/194 (15%)
Query: 204 CNLCSATFKTARGLKQHEKKHMTSILLTCDQCHSTEEAGCKCNRQLLQCSLCSETFKSKP 263
C C +F + L +H++ H + +C C ++F K
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHT--------------------GEKPYKCPECGKSFSDKK 63
Query: 264 SLRAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQ 323
L H T +CP C +F+ + L++H +TH+ E+ Y C CGK
Sbjct: 64 DLTRHQR---------THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 324 LCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQ 383
++L H + H K + C C KSF L H+ H+ E+ + C CG SF +
Sbjct: 115 FSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR 173
Query: 384 RPALWAHKKLHDAK 397
R AL H++ H K
Sbjct: 174 RDALNVHQRTHTGK 187
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 31/219 (14%)
Query: 96 SFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKF 155
S F +S + + +K + C CG SF + L H++ + E YK C CGK F
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK--CPECGKSF 59
Query: 156 VKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTAR 215
L H + H+ +PYKC CG F ++ H++ + C C +F
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 216 GLKQHEKKHMTSILLTCDQCHSTEEAGCKCNRQLLQCSLCSETFKSKPSLRAHIWKCQME 275
L+ H++ H + +C C ++F + +L H
Sbjct: 120 HLRAHQRTHT--------------------GEKPYKCPECGKSFSREDNLHTHQR----- 154
Query: 276 PQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERS 314
T +CP C +F+ + L H +TH+ +++
Sbjct: 155 ----THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Query: 10 CSLCSETFKSKPRLRAHIWKCQMEPETILETLGHQFESQLF-------TGPMEKCDIMCD 62
C C ++F + LRAH E G F SQL T EK C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF-SQLAHLRAHQRTHTGEK-PYKCP 137
Query: 63 QCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
+CGK F+ +L H + H K + C CGKSF L H H+ +K
Sbjct: 138 ECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 398 LEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIR 457
+E +KC C + F ++S L H RTH+ +PYKC C + F + D+Q H+R H+ +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEK 59
Query: 458 PYQCTLCSASFKRSSHLKQHGKTH 481
PY+C C SF RS HL +H +TH
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTH 83
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLC 709
++C CGK F ++ +L +H + H+ +PYKC CG F + D+ +H Q H+ +PY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKC 63
Query: 710 TICSATFKTARALKQHGRTH 729
C +F + L +H RTH
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYK 401
K + C C KSF + L+ H+ H+ E+ + C CG SF Q L H++ H E
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG--EKP 60
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVR 428
+KC C + F R+ L+ H RTH + +
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 113 QKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVR 172
+K + C CG SF Q S L H++ + E YK C CGK F ++ L +H + H+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK--CPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 173 PYKCDICGHGFKLNYDMLRHKQDVHSN 199
PYKC CG F + + RH Q H N
Sbjct: 60 PYKCPECGKSFSRSDHLSRH-QRTHQN 85
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVR 428
E+ + C CG SF Q L H++ H E +KC C + F ++S L H RTH+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTG--EKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 429 PYKCDICEQHFKFNYDIQMHKRCVHSNIR 457
PYKC C + F + + H+R H N +
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQR-THQNKK 87
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 311 IERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
+E+ Y C CGK +SNL H + H K + C C KSF + L+ H+ H+ E+
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 371 GFVCDLCGASFKQRPALWAHKKLHDAK 397
+ C CG SF + L H++ H K
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYK 145
K + C CGKSF +S L++H H+ +K + C CG SF Q S L H++ + E YK
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVR 172
C CGK F ++ L H + H + +
Sbjct: 63 --CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 617 QKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVR 676
+K + C CG SF Q + L H++ + E YK C CGK F ++ L +H + H+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK--CPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 677 PYKCDICGHGFKLNYDMLRHKQ 698
PYKC CG F + + RH++
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQR 81
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 54 MEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQ 113
MEK C +CGK F+ S +L +H + H K + C CGKSF +S+L++H H+ +
Sbjct: 1 MEK-PYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 114 KGFVCDLCGASFKQRSCLWSHKK 136
K + C CG SF + L H++
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQR 81
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCN 205
++C CGK F ++ +L +H + H+ +PYKC CG F + D+ +H++ + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 206 LCSATFKTARGLKQHEKKHMT 226
C +F + L +H++ H
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQN 85
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 590 KKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYK 649
K + C C KSF + L++H H+ +K + C CG SF Q + L H++ + E YK
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVR 676
C CGK F ++ L H + H + +
Sbjct: 63 --CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCD 347
+CP C +F+ L+ H +TH+ E+ Y C CGK +S+L H + H K + C
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKCP 64
Query: 348 VCDKSFVNRAGLRLHKLIHSEER 370
C KSF L H+ H ++
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 559 IGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQK 618
+ + Y C +CGK S + L H + H K + C C KSF ++L++H H+ +K
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 619 SFVCELCGASFKQRTCLWSHKK 640
+ C CG SF + L H++
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQR 81
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 533 YSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKH 592
Y C +C FS S+++KH +TH + Y C +CGK S + L H + H K +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGE--KPYKCPECGKSFSQSSDLQKHQR-THTGEKPY 61
Query: 593 SCENCAKSFFSLAELRQHSPVHSEQK 618
C C KSF L +H H +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 509 KCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQC 568
+C + L H T + Y C +C FS SD++KH +TH + Y C +C
Sbjct: 9 ECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH--TGEKPYKCPEC 66
Query: 569 GKQLSYAKTLANHIK 583
GK S + L+ H +
Sbjct: 67 GKSFSRSDHLSRHQR 81
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 172 RPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTSILLT 231
+PYKC CG F + ++ +H++ + C C +F + L++H++ H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 232 CDQC 235
C +C
Sbjct: 63 CPEC 66
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHIKPEHDLKTKMNLFTCHQCQSTEEAGCKCNMMLMK 516
+PY+C C SF +SS+L++H +TH T + C +C +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH--------TGEKPYKCPEC----------GKSFSQ 44
Query: 517 CQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTH 555
L H T + Y C +C FS + +H +TH
Sbjct: 45 SSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C +CGK F+ S L +H + H K + C CGKSF + L +H H +K
Sbjct: 35 CPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 649 KFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYL 708
+F C CG+ F K+Y+L H + H+D RPY CDIC F+ D LR + +HS +P+
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ-DHLRDHRYIHSKEKPFK 75
Query: 709 CTICSATFKTARALKQHGRTHIKS 732
C C F +R L H H+++
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQT 99
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 311 IERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
++ + C CG+ + NL +H ++ H + ++CD+C K+F + LR H+ IHS+E+
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 371 GFVCDLCGASFKQRPALWAHKKLH 394
F C CG F Q L HK LH
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLH 96
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 396 AKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+K + +F C C R F ++ L H RTH+D RPY CDIC + F+ ++ H R +HS
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSK 70
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P++C C F +S L H H++
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 56 KCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKG 115
K + +C CG+HFT S +L H + H + + CDIC K+F L+ H +IHS++K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 116 FVCDLCGASFKQRSCLWSHK 135
F C CG F Q L HK
Sbjct: 74 FKCQECGKGFCQSRTLAVHK 93
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 145 KFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHS-NIIHN 203
+F C CG+ F K+Y+L H + H+D RPY CDIC F+ D LR + +HS
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ-DHLRDHRYIHSKEKPFK 75
Query: 204 CNLCSATFKTARGLKQHEKKHMTS 227
C C F +R L H+ HM +
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQT 99
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 617 QKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVR 676
+K F+C+ CG F + L H++ + +E Y C +C K F + L +H HS +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPY--TCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 677 PYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
P+KC CG GF + + HK T+ P
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSP 102
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 113 QKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVR 172
+K F+C CG F + L H++ + +E Y C +C K F + L +H HS +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPY--TCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 173 PYKCDICGHGFKLNYDMLRHK 193
P+KC CG GF + + HK
Sbjct: 73 PFKCQECGKGFCQSRTLAVHK 93
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYK 401
K+ C C + F L +H+ H++ER + CD+C +F+++ L H+ +H E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK--EKP 73
Query: 402 FKCILCDRKFHRNSKLNSHMRTH 424
FKC C + F ++ L H H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 556 LPA-IGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVH 614
LP+ + + C CG+ + + L H + H + ++C+ C K+F LR H +H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 615 SEQKSFVCELCGASFKQRTCLWSHK 639
S++K F C+ CG F Q L HK
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 363 KLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMR 422
+L ++ F+C CG F + L H++ H E + C +C + F R L H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD--ERPYTCDICHKAFRRQDHLRDHRY 66
Query: 423 THSDVRPYKCDICEQHFKFNYDIQMHK 449
HS +P+KC C + F + + +HK
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYK 145
K C CG+ F + L H H++++ + CD+C +F+++ L H+ + +E +K
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 146 FECTLCGKKFVKNYSLYEHMKRH 168
C CGK F ++ +L H H
Sbjct: 76 --CQECGKGFCQSRTLAVHKTLH 96
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 590 KKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYK 649
K+ C+ C + F L H H++++ + C++C +F+++ L H+ + +E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE--KP 73
Query: 650 FECTLCGKKFVKNYSLYEHMKRH 672
F+C CGK F ++ +L H H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 678 YKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTHIKSR 733
+ C CG F +Y++L H++ H+ RPY C IC F+ L+ H H K +
Sbjct: 18 FICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKI 341
C +C F + L+ H HS E+ + C CGK C + L++H K++H++
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQT 99
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 529 NKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLK 588
K + C+ C F+ ++ H +TH R YTCD C K L +H + +H K
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDE--RPYTCDICHKAFRRQDHLRDH-RYIHSK 70
Query: 589 IKKHSCENCAKSFFSLAELRQHSPVHSEQKS 619
K C+ C K F L H +H + S
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 501 QSTEEAGCK-CNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAI 559
++ +E CK C K L H T ++ Y+C+ C F + +R H H +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH--SK 70
Query: 560 GRSYTCDQCGKQLSYAKTLANHIKGVHLKI 589
+ + C +CGK ++TLA H K +H++
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVH-KTLHMQT 99
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 174 YKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTSILLTCD 233
+ C CG F +Y++L H++ + C++C F+ L+ H H C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 234 QC 235
+C
Sbjct: 78 EC 79
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLH-DAKLEYKFKC 404
C C K F+++ L++H H+ E+ F C CG + ++ L H+ + + E F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 405 ILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+C F R +L HM +H+ PYKC C Q F D+Q H +HS
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDH--S 345
+CP C F K LK H + H+ E+ + C CGK NL H + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHK-KLHDA 396
C VC ++F R LRLH + H+ E + C C F Q+ L +H KLH
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYK-FEC 148
C C K F + LK H+ H+ +K F C CG + ++ L H+ N S + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 149 TLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSN 199
++C + F + L HM H+ PYKC C F D+ H +HS
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 594 CENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKK---WNHEELIYKF 650
C C K F S L+ H+ H+ +K F C CG + ++ L H+ N E + F
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV--F 67
Query: 651 ECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHS 702
C++C + F + L HM H+ PYKC C F D+ H +HS
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 143 SYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQD---VHSN 199
S EC C KKF+ Y L H ++H+ +P++C CG + ++L H+ S
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 200 IIHNCNLCSATFKTARGLKQHEKKHMTSILLTCDQCHSTEEAGCKCNRQLLQCSLCSETF 259
+ C++C TF+ L+ H H + +CS CS+ F
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEM--------------------PYKCSSCSQQF 104
Query: 260 KSKPSLRAHIWKCQMEPQT 278
K L++H+ K P +
Sbjct: 105 MQKKDLQSHMIKLHSGPSS 123
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 651 ECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQD--VHSTTRPYL 708
EC C KKF+ Y L H ++H+ +P++C CG + ++L H+ ++ + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 709 CTICSATFKTARALKQHGRTHI 730
C++C TF+ L+ H +H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHT 90
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 431 KCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPEHDLKT 490
+C C + F Y +++H R H+ +P++C C + R +L EH+ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLL---------EHEARN 58
Query: 491 KMN----LFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKS 546
MN +FTC CQ T + L H+ + ++ Y C C QF K
Sbjct: 59 CMNRSEQVFTCSVCQET----------FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108
Query: 547 DMRKH 551
D++ H
Sbjct: 109 DLQSH 113
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 403 KCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMH--KRCVHSNIRPYQ 460
+C C +KF L H R H+ +P++C C + + ++ H + C++ + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 461 CTLCSASFKRSSHLKQHGKTHI 482
C++C +F+R L+ H +H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHT 90
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 61 CDQCGKHFTSSQSLARH--IKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVC 118
C +CGK + ++L H C++ + C +C ++F EL+ H H+ + + C
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 119 DLCGASFKQRSCLWSH 134
C F Q+ L SH
Sbjct: 98 SSCSQQFMQKKDLQSH 113
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 535 CEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKG--VHLKIKKH 592
C C +F K ++ H + H + + C +CGK + L H ++ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE--KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 593 SCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSH 638
+C C ++F ELR H H+ + + C C F Q+ L SH
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLC 709
F+C +CGK F ++ +L H+ HSD RPY C CG F DM +H +H+ +P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 710 TICSATFKTARALKQHGRTHI 730
+C F + L H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQC 461
F C +C + F R+S L++H+ HSD RPY C C + F D++ H +H+ +P++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 462 TLCSASFKRSSHLKQHGKTHI 482
+C +F +SS+L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCN 205
F+C +CGK F ++ +L H+ HSD RPY C CG F DM +H H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 206 LCSATFKTARGLKQHEKKH 224
+C F + L H +KH
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDL 120
C CGK F S +L+ H+ +H + + C CGK F S++K+H+FIH+ +K C +
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 121 CGASFKQRSCLWSHKK 136
CG +F Q S L +H +
Sbjct: 63 CGKAFSQSSNLITHSR 78
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECT 149
C ICGKSF +S L H IHS+ + + C CG F Q+S + H + E +K C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK--CQ 61
Query: 150 LCGKKFVKNYSLYEHMKRHS 169
+CGK F ++ +L H ++H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCI 405
C +C KSF + L H LIHS+ R + C CG F Q+ + H +H E KC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQ 61
Query: 406 LCDRKFHRNSKLNSHMRTHS 425
+C + F ++S L +H R H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 562 SYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKSFV 621
S+ C CGK + TL+ H+ +H + + C+ C K F +++++H+ +H+ +K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 622 CELCGASFKQRTCLWSHKK 640
C++CG +F Q + L +H +
Sbjct: 60 CQVCGKAFSQSSNLITHSR 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 116 FVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYK 175
F C +CG SFK+ S L +H + + Y C CGK+F + + +H H+ +P+K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPY--PCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 176 CDICGHGFKLNYDMLRHKQ 194
C +CG F + +++ H +
Sbjct: 60 CQVCGKAFSQSSNLITHSR 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 314 SYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFV 373
S+ C CGK +S LS H+ +H + + C C K F ++ ++ H IH+ E+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 374 CDLCGASFKQRPALWAHKKLHDA 396
C +CG +F Q L H + H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDV 348
C +C +F L +HL HS R Y C +CGK+ S++ H +H K H C V
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQV 62
Query: 349 CDKSFVNRAGLRLHKLIHS 367
C K+F + L H H+
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 594 CENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECT 653
C+ C KSF + L H +HS+ + + C+ CG F Q++ + H + E +K C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK--CQ 61
Query: 654 LCGKKFVKNYSLYEHMKRHS 673
+CGK F ++ +L H ++H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 510 CNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCG 569
C + L +HL + Y C+ C +F KSDM+KH H + + C CG
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE--KPHKCQVCG 64
Query: 570 KQLSYAKTLANH 581
K S + L H
Sbjct: 65 KAFSQSSNLITH 76
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 250 LQCSLCSETFKSKPSLRAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTH 309
C +C ++FK +L H+ ++ + C C F K +K H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL---------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Query: 310 SIERSYTCHHCGKQLCGASNLSLH 333
+ E+ + C CGK +SNL H
Sbjct: 53 TGEKPHKCQVCGKAFSQSSNLITH 76
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 532 NYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKK 591
++ C+ C F S + H H + R Y C CGK+ + H +H K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH--SDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKP 57
Query: 592 HSCENCAKSFFSLAELRQHSPVHS 615
H C+ C K+F + L HS H+
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHT 81
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHS 111
C CGK F + +H +H K H C +CGK+F +S L HS H+
Sbjct: 32 CQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F R+++L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F + L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMH 448
+P+ CDIC + F + + + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S L RHI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ ++ L+ HI+ +H K C +C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F + H K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F AEL +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F ++ L H++ H+ +P++C IC F + + H + H+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F + K+H + H++ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F A L H IH+ ++ F C +C +F + L H + H E
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 30/100 (30%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F ++EL +H IH+ QK F+C +C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQK------------------------------PFQCRICM 41
Query: 153 KKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
+ F ++ L H++ H+ +P+ CDICG F + + RH
Sbjct: 42 RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 559 IGRSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSE 616
+ R Y C + C ++ S + L HI+ +H K C C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 617 QKSFVCELCGASFKQ 631
+K F C++CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ +L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
QC +C F+ L +H++TH+ E+ + C CG++ + H K +HL+ KD
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F ++ L H++ H+ +P++C IC F + + H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS +++ +H + H + + C C + S + L HI+ H K
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F E ++H+ +H QK
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + ++ H R +H+ +P+QC +C +F RS HL
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 52 ------------------------------------THIRTHTGEKPFACDICGRKFARS 75
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 76 DERKRHTKIHL 86
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F R++ L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F + L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMH 448
+P+ CDIC + F + + + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ +++L+ HI+ +H K C +C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F + H K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S L RHI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F A+L +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F A L H IH+ ++ F C +C +F + L H + H E
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F ++ L H++ H+ +P++C IC F + + H + H+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F + K+H + H++ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 559 IGRSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSE 616
+ R Y C + C ++ S + L HI+ +H K C C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 617 QKSFVCELCGASFKQ 631
+K F C++CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
F+C +C + F ++ L H++ H+ +P+ CDICG F + + RH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS +D+ +H + H + + C C + S + L HI+ H K
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F E ++H+ +H QK
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + D+ H R +H+ +P+QC +C +F RS HL
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 52 ------------------------------------THIRTHTGEKPFACDICGRKFARS 75
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 76 DERKRHTKIHL 86
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
QC +C F+ L +H++TH+ E+ + C CG++ + H K +HL+ KD
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F ++ L H++ H+ +P++C IC F + + H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 172 RPYKCDI--CGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTSIL 229
RPY C + C F + D+ RH + C +C F + L H + H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 230 LTCDQC 235
CD C
Sbjct: 63 FACDIC 68
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F R+ +L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F + L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMH 448
+P+ CDIC + F + + + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S L RHI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ + L+ HI+ +H K C +C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F + H K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F ++ L H++ H+ +P++C IC F + + H + H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F + K+H + H++ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F EL +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F L H IH+ ++ F C +C +F + L H + H E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 559 IGRSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSE 616
+ R Y C + C ++ S + L HI+ +H K C C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 617 QKSFVCELCGASFKQ 631
+K F C++CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 30/100 (30%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F + EL +H IH+ QK F+C +C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQK------------------------------PFQCRICM 41
Query: 153 KKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
+ F ++ L H++ H+ +P+ CDICG F + + RH
Sbjct: 42 RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ +L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
QC +C F+ L +H++TH+ E+ + C CG++ + H K +HL+ KD
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS ++ +H + H + + C C + S + L HI+ H K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F E ++H+ +H QK
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F ++ L H++ H+ +P++C IC F + + H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + ++ H R +H+ +P+QC +C +F RS HL
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 52 ------------------------------------THIRTHTGEKPFACDICGRKFARS 75
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 76 DERKRHTKIHL 86
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 403 KCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCT 462
KC +C + F R KL +HMR H+ V+PYKC C+ + + H R +HS+ RP++C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQ 68
Query: 463 LCSASFKRSSHLKQHGKTHI 482
+C + + SS L H ++H
Sbjct: 69 ICPYASRNSSQLTVHLRSHT 88
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 374 CDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCD 433
C++CG F ++ L H + H YK C CD +S LN H+R HSD RP+KC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYK--CKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 434 ICEQHFKFNYDIQMHKR 450
IC + + + +H R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 651 ECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCT 710
+C +CGK F + L HM+ H+ V+PYKC C + + + +H + +HS RP+ C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQ 68
Query: 711 ICSATFKTARALKQHGRTHI 730
IC + + L H R+H
Sbjct: 69 ICPYASRNSSQLTVHLRSHT 88
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 622 CELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCD 681
CE+CG F ++ L +H + + + ++C C + SL +H++ HSD RP+KC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH--TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 682 ICGHGFKLNYDMLRH 696
IC + + + + H
Sbjct: 69 ICPYASRNSSQLTVH 83
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDL 120
C+ CGK F+ L H++C H +K + C C + +S L +H IHS+++ F C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 121 CGASFKQRSCLWSH 134
C + + S L H
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCD 347
+C VC F+ K KLK+H++ H+ + Y C C +S+L+ H++ +H + C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQ 68
Query: 348 VCDKSFVNRAGLRLHKLIHSEERG 371
+C + N + L +H H+ + G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSG 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 317 CHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDL 376
C CGK L H++ H +K + C CD + + + L H IHS+ER F C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 377 CGASFKQRPALWAHKKLHDA 396
C + + L H + H
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 118 CDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCD 177
C++CG F ++ L +H + + YK C C + SL +H++ HSD RP+KC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYK--CKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 178 ICGHGFKLNYDMLRH 192
IC + + + + H
Sbjct: 69 ICPYASRNSSQLTVH 83
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 429 PYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTH 481
P+KC++C + F ++ H RC H+ ++PY+C C + SS L +H + H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 147 ECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSN-IIHNCN 205
+C +CGK F + L HM+ H+ V+PYKC C + + + +H + +HS+ C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQ 68
Query: 206 LCSATFKTARGLKQHEKKHM 225
+C + + L H + H
Sbjct: 69 ICPYASRNSSQLTVHLRSHT 88
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 565 CDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCEL 624
C+ CGK S L H++ H +K + C+ C + + L +H +HS+++ F C++
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 625 CGASFKQRTCLWSH 638
C + + + L H
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 677 PYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTHIKSR 733
P+KC++CG F D L+ H+ +PY C C + +L +H R H R
Sbjct: 8 PHKCEVCGKCFSRK-DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 347 DVCDKSFVNRAGLRLH---KLIHSEERGFVCDLCGASFKQRP-----ALWAHKKLHDAKL 398
D C + F ++ L H + IH E + FVC G S + RP L H + H +
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKC--DICEQHFKFNYDIQMHKRCVHSNI 456
+K C + + R L +H+R+H+ +PY C + C + F D H+ HSN
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 457 RPYQCTL--CSASFKRSSHLKQHGKT 480
+PY C L C+ + S L++H KT
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 595 ENCAKSFFSLAELRQH---SPVHSEQKSFVCELCGAS-----FKQRTCLWSHKKWNHEEL 646
+ C++ F S +L H +H E+K FVC G S FK + L H + + E
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 647 IYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCD--ICGHGFKLNYDMLRHKQDVHSTT 704
+K C K + + +L H++ H+ +PY C+ C F D +H+ HS
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 705 RPYLCTI--CSATFKTARALKQHGRT 728
+PY+C + C+ + +L++H +T
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 91 DICGKSFFAASELKQH---SFIHSEQKGFVCDLCGAS-----FKQRSCLWSHKKWNHEEL 142
D C + F + +L H IH E+K FVC G S FK + L H + + E
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 143 SYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKC--DICGHGFKLNYDMLRHKQDVHSN- 199
+K C K + + +L H++ H+ +PY C + C F D +H+ HSN
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 200 IIHNCNL--CSATFKTARGLKQHEK 222
+ C L C+ + L++H K
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 292 CKLTFTDKRKLKSHLKTHSIERSYTCHH--CGKQLCGASNLSLHIKSVHLKIKDHSCDV- 348
C+ +++ LK+HL++H+ E+ Y C H C K AS+ + H H K + C +
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 349 -CDKSFVNRAGLRLH-KLIHS 367
C K + + + LR H K +H
Sbjct: 135 GCTKRYTDPSSLRKHVKTVHG 155
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 536 EQCKVQFSCKSDMRKHAKT-HLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKI----K 590
+ C +F + + H + H+ + + C G A ++ VH++ K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 591 KHSC--ENCAKSFFSLAELRQHSPVHSEQKSFVC--ELCGASFKQRTCLWSHKKWNH-EE 645
H C E C KS+ L L+ H H+ +K ++C E C +F + H+ H E
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 646 LIYKFECTLCGKKFVKNYSLYEHMK 670
Y + C K++ SL +H+K
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 481 HIKPEHDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQ-LLHSHLNTQDNKINYSC--EQ 537
HI EH + + F CH GC + K Q +L H+ + + C E
Sbjct: 22 HINSEH-IHGERKEFVCHW------GGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG 74
Query: 538 CKVQFSCKSDMRKHAKTHLPAIGRSYTCDQ--CGKQLSYAKTLANHIKGVHLKIKKHSCE 595
C+ +S +++ H ++H + Y C+ C K S A A H H K + C+
Sbjct: 75 CRKSYSRLENLKTHLRSHTGE--KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK 132
Query: 596 --NCAKSFFSLAELRQH 610
C K + + LR+H
Sbjct: 133 LPGCTKRYTDPSSLRKH 149
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 510 CNMMLMKCQLLHSHLNTQDNKINYSCEQ--CKVQFSCKSDMRKHA-KTHLPAIGRSYTC- 565
C + + L +HL + + Y CE C FS SD KH +TH + + Y C
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH--SNEKPYVCK 132
Query: 566 -DQCGKQLSYAKTLANHIKGVH 586
C K+ + +L H+K VH
Sbjct: 133 LPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 399 EYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNI 456
E + C + CDR+F R+ +L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 59
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHLR 86
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F + L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Query: 427 VRPYKCDICEQHFKFNYDIQMH 448
+P+ CDIC + F + + + H
Sbjct: 59 EKPFACDICGRKFARSDERKRH 80
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S L RHI+ +H K C IC ++F + L H H+
Sbjct: 7 PVESCD-------RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 59 EKPFACDICGRKFAR 73
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 312 ERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEE 369
ER Y C C ++ + L+ HI+ +H K C +C ++F L H H+ E
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 370 RGFVCDLCGASFKQRPALWAHKKLH 394
+ F CD+CG F + H K+H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F ++ L H++ H+ +P++C IC F + + H + H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 59
Query: 705 RPYLCTICSATFKTARALKQHGRTHIK 731
+P+ C IC F + K+H + H++
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHLR 86
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F EL +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 66
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 67 CGRKFARSDERKRHTKIH 84
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F L H IH+ ++ F C +C +F + L H + H E
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 59
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 561 RSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQK 618
R Y C + C ++ S + L HI+ +H K C C ++F L H H+ +K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 619 SFVCELCGASFKQ 631
F C++CG F +
Sbjct: 61 PFACDICGRKFAR 73
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 30/100 (30%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F + EL +H IH+ QK F+C +C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQK------------------------------PFQCRICM 40
Query: 153 KKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
+ F ++ L H++ H+ +P+ CDICG F + + RH
Sbjct: 41 RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ +L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 64
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 65 DICGRKFARSDERKRHTKIH 84
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQ 113
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH Q
Sbjct: 34 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F ++ L H++ H+ +P++C IC F + + H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + ++ H R +H+ +P+QC +C +F RS HL
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 50
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 51 ------------------------------------THIRTHTGEKPFACDICGRKFARS 74
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 75 DERKRHTKIHL 85
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS ++ +H + H + + C C + S + L HI+ H K
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 60
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQ 617
+C+ C + F E ++H+ +H Q
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLK 340
QC +C F+ L +H++TH+ E+ + C CG++ + H K +HL+
Sbjct: 35 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 86
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 399 EYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNI 456
E + C + CDR+F R+ +L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F + L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMH 448
+P+ CDIC + F + + + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S L RHI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 312 ERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEE 369
ER Y C C ++ + L+ HI+ +H K C +C ++F L H H+ E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 370 RGFVCDLCGASFKQRPALWAHKKLH 394
+ F CD+CG F + H K+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F ++ L H++ H+ +P++C IC F + + H + H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIK 731
+P+ C IC F + K+H + H++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F EL +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F L H IH+ ++ F C +C +F + L H + H E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 561 RSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQK 618
R Y C + C ++ S + L HI+ +H K C C ++F L H H+ +K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 619 SFVCELCGASFKQ 631
F C++CG F +
Sbjct: 62 PFACDICGRKFAR 74
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 30/100 (30%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F + EL +H IH+ QK F+C +C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQK------------------------------PFQCRICM 41
Query: 153 KKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
+ F ++ L H++ H+ +P+ CDICG F + + RH
Sbjct: 42 RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ +L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F ++ L H++ H+ +P++C IC F + + H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIH 110
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + ++ H R +H+ +P+QC +C +F RS HL
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 52 ------------------------------------THIRTHTGEKPFACDICGRKFARS 75
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 76 DERKRHTKIHL 86
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLK 340
QC +C F+ L +H++TH+ E+ + C CG++ + H K +HL+
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 87
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS ++ +H + H + + C C + S + L HI+ H K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVH 614
+C+ C + F E ++H+ +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F +S L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ +SNL+ HI+ +H K C +C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F + H K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 427 VRPYKCDICEQHF 439
+P+ CDIC + F
Sbjct: 60 EKPFACDICGRKF 72
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S +L RHI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F + + L H IH+ ++ F C +C +F + L H + H E
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F + +L H++ H+ +P++C IC F + + H + H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F + K+H + H++ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F +S L +H IH+ QK F C +C +F + L +H + + E F C +CG
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICG 69
Query: 153 KKFVKNYSLYEHMKRH 168
+KF ++ H K H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F + L +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+D L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 559 IGRSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSE 616
+ R Y C + C ++ S + L HI+ +H K C C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 617 QKSFVCELCGASFKQ 631
+K F C++CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 617 QKSFVC--ELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSD 674
++ + C E C F + L H + + + F+C +C + F ++ L H++ H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 675 VRPYKCDICGHGFKLNYDMLRH 696
+P+ CDICG F + + RH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 113 QKGFVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSD 170
++ + C + C F S L H + + + F+C +C + F ++ L H++ H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 171 VRPYKCDICGHGFKLNYDMLRH 192
+P+ CDICG F + + RH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS S++ +H + H + + C C + S + L HI+ H K
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F E ++H+ +H QK
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
QC +C F+ L +H++TH+ E+ + C CG++ + H K +HL+ KD
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F + +L H++ H+ +P++C IC F + + H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + ++ H R +H+ +P+QC +C +F RS HL
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 52 ------------------------------------THIRTHTGEKPFACDICGRKFARS 75
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 76 DERKRHTKIHL 86
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F ++ L H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F RS K+H K H++
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F Q +L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMH 448
+P+ CDIC + F + + + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ S SL RHI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 113 QKGFVCDLCGASFKQ 127
+K F CD+CG F +
Sbjct: 60 EKPFACDICGRKFAR 74
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ + +L+ HI+ +H K C +C ++F L H H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F + H K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F ++ SL H++ H+ +P++C IC F + + H + H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F + K+H + H++ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F L H IH+ ++ F C +C +F + L H + H E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF R+ + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F L +H +H+ QK F C +C +F + L +H + + E F C +
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 617 QKSFVC--ELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSD 674
++ + C E C F Q L H + + + F+C +C + F ++ L H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 675 VRPYKCDICGHGFKLNYDMLRH 696
+P+ CDICG F + + RH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F + L +H IH+ QK F C +C +F + L +H + + E F C +CG
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICG 69
Query: 153 KKFVKNYSLYEHMKRH 168
+KF ++ H K H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 113 QKGFVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSD 170
++ + C + C F Q L H + + + F+C +C + F ++ L H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 171 VRPYKCDICGHGFKLNYDMLRH 192
+P+ CDICG F + + RH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 561 RSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQK 618
R Y C + C ++ S + +L HI+ +H K C C ++F L H H+ +K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 619 SFVCELCGASFKQ 631
F C++CG F +
Sbjct: 62 PFACDICGRKFAR 74
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ L H++ H+ ++ + C C + + +L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIH 366
D+C + F + H IH
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ S L HI+ H K CDICG+ F + E K+H+ IH QK
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 255 CSETFKSKPSLRAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERS 314
C F SL HI + T QC +C F+ L +H++TH+ E+
Sbjct: 12 CDRRFSQSGSLTRHIR---------IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 315 YTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
+ C CG++ + H K +HL+ KD
Sbjct: 63 FACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F ++ SL H++ H+ +P++C IC F + + H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F + K+H K H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS + +H + H + + C C + S + L HI+ H K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F E ++H+ +H QK
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 49/131 (37%)
Query: 428 RPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKPE 485
RPY C + C++ F + + H R +H+ +P+QC +C +F RS HL
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 486 HDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCK 545
+H+ T + ++C+ C +F+
Sbjct: 52 ------------------------------------THIRTHTGEKPFACDICGRKFARS 75
Query: 546 SDMRKHAKTHL 556
+ ++H K HL
Sbjct: 76 DERKRHTKIHL 86
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 367 SEERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTH 424
SE+R F+C C + + L H + H + Y+ C+R+F R+ +L H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 425 SDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTL--CSASFKRSSHLKQHGKTH 481
+ V+P++C C++ F + ++ H R H+ +P+ C C F RS L +H H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 615 SEQKSFVCEL--CGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRH 672
SE++ F+C C + + + L H + + E Y+ + C ++F ++ L H +RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 673 SDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARA 721
+ V+P++C C F + D L+ H+ +P+ C S K AR+
Sbjct: 62 TGVKPFQCKTCQRKFSRS-DHLKTHTRTHTGEKPFSCRWPSCQKKFARS 109
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 310 SIERSYTCHH--CGKQLCGASNLSLHIKSVHLKIKDHSCDV--CDKSFVNRAGLRLHKLI 365
S +R + C + C K+ S+L +H + H K + CD C++ F L+ H+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 366 HSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTH 424
H+ + F C C F + L H + H + + + C +KF R+ +L H H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 111 SEQKGFVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRH 168
SE++ F+C C + + S L H + + E Y+ + C ++F ++ L H +RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 169 SDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARG 216
+ V+P++C C F + + H + +C S K AR
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARS 109
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 290 PVCKLTFTDKRKLKSHLKTHSIERSYTCH--HCGKQLCGASNLSLHIKSVHLKIKDHSCD 347
P C + L+ H + H+ E+ Y C C ++ + L H + H +K C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCK 70
Query: 348 VCDKSFVNRAGLRLHKLIHSEERGFVCDL--CGASFKQRPALWAHKKLH 394
C + F L+ H H+ E+ F C C F + L H +H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 55 EKCDIMC--DQCGKHFTSSQSLARHIKCVHLKIKHHWCDI--CGKSFFAASELKQHSFIH 110
EK MC C K + L H + H K + CD C + F + +LK+H H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 111 SEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRH 168
+ K F C C F + L +H + + E + C KKF ++ L H H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 586 HLKIKKHSCE--NCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNH 643
H K + C+ +C + F +L++H H+ K F C+ C F + L +H + +
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 644 EELIYKFECTLCGKKFVKNYSLYEHMKRH 672
E + C KKF ++ L H H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 57/164 (34%)
Query: 425 SDVRPYKCDIC---EQHFKFNYDIQMHKRCVHSNIRPYQCTL--CSASFKRSSHLKQHGK 479
S+ RP+ C +++FK ++ +QMH R H+ +PYQC C F RS LK+H +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSH-LQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 480 TH--IKPEHDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQ 537
H +KP + C+
Sbjct: 60 RHTGVKP------------------------------------------------FQCKT 71
Query: 538 CKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANH 581
C+ +FS ++ H +TH S C K+ + + L H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCH--HCGKQLCGASNLSLH 333
QC C+ F+ LK+H +TH+ E+ ++C C K+ + L H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F Q+ L H ++H + F+C +C R F + + LN+H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG--QKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMHKRCVHSNI 456
+P+ CDIC + F +H R H+ I
Sbjct: 60 EKPFACDICGRKF-----ATLHTRTRHTKI 84
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F + + L++H+R H+ +P++C IC ++F + H R H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F +H K H++
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLR 87
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ +NL HI+ +H K C +C ++F +A L H H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F H K+H
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 617 QKSFVC--ELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSD 674
++ + C E C F Q+T L +H + + + F+C +C + F + SL H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 675 VRPYKCDICGHGFKLNYDMLRH 696
+P+ CDICG F + RH
Sbjct: 60 EKPFACDICGRKFATLHTRTRH 81
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F + L H IH+ ++ F C +C +F Q+ +L AH + H E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG--E 60
Query: 400 YKFKCILCDRKF 411
F C +C RKF
Sbjct: 61 KPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 113 QKGFVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSD 170
++ + C + C F Q++ L +H + + + F+C +C + F + SL H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 171 VRPYKCDICGHGFKLNYDMLRH 192
+P+ CDICG F + RH
Sbjct: 60 EKPFACDICGRKFATLHTRTRH 81
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F L H +H+ QK F C +C +F Q+ L +H + + E F C +
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFATLHTRTRHTKIH 85
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F + L H IH+ QK F C +C +F Q++ L +H + + E F C +CG
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE--KPFACDICG 69
Query: 153 KKFVKNYSLYEHMKRH 168
+KF ++ H K H
Sbjct: 70 RKFATLHTRTRHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F + +L H++ H+ +P++C IC F + H + H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F T +H + H++ +
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ +L HI+ +H K C IC ++F + L H H+
Sbjct: 8 PVESCD-------RRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 113 QKGFVCDLCGASF 125
+K F CD+CG F
Sbjct: 60 EKPFACDICGRKF 72
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 561 RSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQK 618
R Y C + C ++ S L HI+ +H K C C ++F A L H H+ +K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 619 SFVCELCGASF 629
F C++CG F
Sbjct: 62 PFACDICGRKF 72
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ K L +H++ H+ ++ + C C + ++L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIHSEER 370
D+C + F H IH ++
Sbjct: 66 DICGRKFATLHTRTRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 255 CSETFKSKPSLRAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERS 314
C F K +L HI + T QC +C F+ + L +H++TH+ E+
Sbjct: 12 CDRRFSQKTNLDTHIR---------IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 315 YTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
+ C CG++ + H K +HL+ KD
Sbjct: 63 FACDICGRKFATLHTRTRHTK-IHLRQKD 90
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS K+++ H + H + + C C + S +L HI+ H K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQQASLNAHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F +L +H+ +H QK
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F + +L H++ H+ +P++C IC F + H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F T +H K H+
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHL 86
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ SL HI+ H K CDICG+ F +H+ IH QK
Sbjct: 37 CRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKC--DICEQHFKFNYDIQMHKRCVHSNIRPYQCTLC 464
C + + ++S L +H+RTH+ +PYKC + C+ F + ++ H R H+ +P+QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVC 81
Query: 465 SASFKRSSHLKQHGKTH 481
+ SF RS HL H K H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 374 CDLCGAS--FKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYK 431
CD G + + + L AH + H + YK CD +F R+ +L H R H+ +P++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 432 CDICEQHFKFNYDIQMH 448
C +C + F + + +H
Sbjct: 78 CGVCNRSFSRSDHLALH 94
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 290 PVCKLTFTDKRKLKSHLKTHSIERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCD 347
P C +T LK+HL+TH+ E+ Y C C + + L+ H + H K C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 348 VCDKSFVNRAGLRLHKLIH 366
VC++SF L LH H
Sbjct: 80 VCNRSFSRSDHLALHMKRH 98
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 655 CGKKFVKNYSLYEHMKRHSDVRPYKC--DICGHGFKLNYDMLRHKQDVHSTTRPYLCTIC 712
C K + K+ L H++ H+ +PYKC + C F + ++ RH + H+ +P+ C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVC 81
Query: 713 SATFKTARALKQHGRTH 729
+ +F + L H + H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 326 GASNLSLHIKSVHLKIKDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVC--DLCGASF 381
G+S L + +H CD C K + + L+ H H+ E+ + C + C F
Sbjct: 4 GSSGPDLEKRRIHY------CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 382 KQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
+ L H + H F+C +C+R F R+ L HM+ H +
Sbjct: 58 ARSDELTRHYRKHTGAKP--FQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 88 HWCDI--CGKSFFAASELKQHSFIHSEQKGFVC--DLCGASFKQRSCLWSHKKWNHEELS 143
H+CD C K + +S LK H H+ +K + C + C F + L H + +
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH--YRKHTGA 73
Query: 144 YKFECTLCGKKFVKNYSLYEHMKRHSD 170
F+C +C + F ++ L HMKRH +
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 151 CGKKFVKNYSLYEHMKRHSDVRPYKC--DICGHGFKLNYDMLRHKQDVHSNIIHNCNLCS 208
C K + K+ L H++ H+ +PYKC + C F + ++ RH + C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 209 ATFKTARGLKQHEKKHMT 226
+F + L H K+H
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 588 KIKKHSCE--NCAKSFFSLAELRQHSPVHSEQKSFVC--ELCGASFKQRTCLWSHKKWNH 643
K + H C+ C K + + L+ H H+ +K + C E C F + L H +
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH--YRK 69
Query: 644 EELIYKFECTLCGKKFVKNYSLYEHMKRHSD 674
F+C +C + F ++ L HMKRH +
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 625 CGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICG 684
C + + + L +H + + E YK C +F ++ L H ++H+ +P++C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 685 HGFK----LNYDMLRHKQ 698
F L M RH+
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 51 TGP-MEKCDI-MCD--QCGKHFTSSQSLARHIKCVHLKIKHHWC--DICGKSFFAASELK 104
+GP +EK I CD C K +T S L H++ H K + C + C F + EL
Sbjct: 6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELT 64
Query: 105 QHSFIHSEQKGFVCDLCGASFKQRSCLWSHKK 136
+H H+ K F C +C SF + L H K
Sbjct: 65 RHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 561 RSYTCDQCGKQLSYAKT--LANHIKGVHLKIKKHSC--ENCAKSFFSLAELRQHSPVHSE 616
R + CD G Y K+ L H++ H K + C E C F EL +H H+
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 617 QKSFVCELCGASFKQRTCLWSHKK 640
K F C +C SF + L H K
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMK 96
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 345 SCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKC 404
+C++C K F + L HKL HS E+ + C +CG FK++ + H + HD + + C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 405 ILCDRKFHRNSKLNSHMR 422
C + F R LN H++
Sbjct: 69 QSCGKGFSRPDHLNGHIK 86
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECT 149
C+ICGK F L +H HS +K + C +CG FK++ + H + + + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 150 LCGKKFVKNYSLYEHMKR 167
CGK F + L H+K+
Sbjct: 70 SCGKGFSRPDHLNGHIKQ 87
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 510 CNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCG 569
C + L+ H + + YSC C ++F K M H ++H ++G+ Y C CG
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG 72
Query: 570 KQLSYAKTLANHIKGVH 586
K S L HIK VH
Sbjct: 73 KGFSRPDHLNGHIKQVH 89
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 652 CTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH-KQDVHSTTRPYLCT 710
C +CGK F Y L H HS +PY C +CG FK M H + S +PY+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 711 ICSATFKTARALKQH 725
C F L H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 404 CILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNI-RPYQCT 462
C +C + F LN H +HS +PY C +C FK + H R ++ +PY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 463 LCSASFKRSSHLKQH 477
C F R HL H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 593 SCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFEC 652
+CE C K F + L +H HS +K + C +CG FK++ + H + + + + C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 653 TLCGKKFVKNYSLYEHMKR 671
CGK F + L H+K+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQ 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 367 SEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTH-- 424
S G C++CG F+ L HK H E + C +C +F R +++ H+R+H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSG--EKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 425 SDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
S +PY C C + F + H + VHS
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 111 SEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRH-- 168
S G C++CG F+ L HK + E Y C +CG +F + + H++ H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY--SCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 169 SDVRPYKCDICGHGFKLNYDMLRHKQDVHSN 199
S +PY C CG GF + H + VHS
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 615 SEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRH-- 672
S CE+CG F+ L HK + E Y C +CG +F + + H++ H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY--SCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 673 SDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
S +PY C CG GF + H + VHS
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 143 SYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFK----LNYDMLRHKQDVHS 198
S C +CGK F Y L H HS +PY C +CG FK ++Y + H V
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 199 NIIHNCNLCSATFKTARGLKQHEKK 223
I C C F L H K+
Sbjct: 65 PYI--CQSCGKGFSRPDHLNGHIKQ 87
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 680 CDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTHIKS 732
C+ICG F+ Y + RHK HS +PY C +C FK + H R+H S
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 432 CDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTH 481
C+IC + F+ Y + HK HS +PY C +C FKR + H ++H
Sbjct: 10 CEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 52 GPMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIH- 110
G + C+ CGK F L RH K H K + C +CG F + H H
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 111 -SEQKGFVCDLCGASFKQRSCLWSHKKWNHEELS 143
S K ++C CG F + L H K H S
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKI-KDHSCD 347
C +C F D L H +HS E+ Y+C CG + +S H++S + K + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 348 VCDKSFVNRAGLRLH-KLIHS 367
C K F L H K +HS
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 176 CDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTSILLTCDQC 235
C+ICG F+ Y + RHK ++C +C FK + H + H S+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV------- 62
Query: 236 HSTEEAGCKCNRQLLQCSLCSETFKSKPSLRAHIWKCQMEPQT 278
+ C C + F L HI + P +
Sbjct: 63 -----------GKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 368 EERGFVCD--LCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHS 425
E R C C F+ A+ H H ++ C C + F +SKL H H+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV---CAECGKAFVESSKLKRHQLVHT 58
Query: 426 DVRPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTL--CSASFKRSSHLKQHGKTH 481
+P++C C + F +++++ H R +H+ RPY C C+ F +S++LK H TH
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 482 IKPEHD 487
K +++
Sbjct: 118 AKAKNN 123
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 42/159 (26%)
Query: 274 MEPQTILETYNILSQCP--VCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLS 331
MEP+TI CP C F D ++ HL TH
Sbjct: 1 MEPRTI--------ACPHKGCTKMFRDNSAMRKHLHTHGP-------------------- 32
Query: 332 LHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDL--CGASFKQRPALWA 389
+ H C C K+FV + L+ H+L+H+ E+ F C CG F L
Sbjct: 33 ----------RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 390 HKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVR 428
H ++H Y C++KF +++ L SH+ TH+ +
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 54 MEKCDIMCDQ--CGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHS 111
ME I C C K F + ++ +H+ ++ H C CGK+F +S+LK+H +H+
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHT 58
Query: 112 EQKGFVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHS 169
+K F C CG F L +H + + + Y C KKF ++ +L H+ H+
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Query: 170 DVR 172
+
Sbjct: 119 KAK 121
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 652 CTLCGKKFVKNYSLYEHMKRHSDVRPYKCDI--CGHGFKLNYDMLRHKQDVHSTTRPYLC 709
C CGK FV++ L H H+ +P++C CG F L++++ H + +H+ RPY+C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVC 95
Query: 710 TI--CSATFKTARALKQHGRTHIKSRT 734
C+ F + LK H TH K++
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 349 CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCIL-- 406
C K F + + +R H H R VC CG +F + L H+ +H E F+C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTG--EKPFQCTFEG 69
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKC--DICEQHFKFNYDIQMH 448
C ++F + L +H+R H+ RPY C D C + F + +++ H
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
+ C K F + +R+H H + VC CG +F + + L H+ + E F+CT
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTF 67
Query: 655 --CGKKFVKNYSLYEHMKRHSDVRPYKCDICG 684
CGK+F +++L H++ H+ RPY C G
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 538 CKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENC 597
C F S MRKH TH P + H C C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--------------------------------HVCAEC 40
Query: 598 AKSFFSLAELRQHSPVHSEQKSFVC--ELCGASFKQRTCLWSHKKWNHEELIYKFECTLC 655
K+F ++L++H VH+ +K F C E CG F L +H + + + Y C
Sbjct: 41 GKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGC 100
Query: 656 GKKFVKNYSLYEHMKRHSDVR 676
KKF ++ +L H+ H+ +
Sbjct: 101 NKKFAQSTNLKSHILTHAKAK 121
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 255 CSETFKSKPSLRAHIWKCQMEPQTILETYNI-LSQCPVCKLTFTDKRKLKSHLKTHSIER 313
C++ F+ ++R H L T+ + C C F + KLK H H+ E+
Sbjct: 13 CTKMFRDNSAMRKH-----------LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 314 SYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSC--DVCDKSFVNRAGLRLHKLIHSEE 369
+ C CGK+ NL H++ +H + + C D C+K F L+ H L H++
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 370 R 370
+
Sbjct: 121 K 121
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 510 CNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCG 569
C M + HL+T ++ + C +C F S +++H H T + CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 570 KQLSYAKTLANHIKGVHLKIKKHSC--ENCAKSFFSLAELRQHSPVHSEQKS 619
K+ S L H++ +H + + C + C K F L+ H H++ K+
Sbjct: 72 KRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 369 ERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
ER + C + C F Q+ L H ++H + F+C +C R F +++ LN H+RTH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG--QKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 427 VRPYKCDICEQHFKFNYDIQMHKRCVHSNI 456
+P+ CDIC + F +H R H+ I
Sbjct: 60 EKPFACDICGRKF-----ATLHTRDRHTKI 84
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 398 LEYKFKCIL--CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
+E + C + CDR+F + + L++H+R H+ +P++C IC ++F + + H R H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTG 59
Query: 456 IRPYQCTLCSASFKRSSHLKQHGKTHIK 483
+P+ C +C F +H K H++
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLR 87
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 311 IERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSE 368
+ER Y C C ++ +NL HI+ +H K C +C ++F GL H H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLH 394
E+ F CD+CG F H K+H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 617 QKSFVC--ELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSD 674
++ + C E C F Q+T L +H + + + F+C +C + F ++ L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 675 VRPYKCDICGHGFKLNYDMLRH 696
+P+ CDICG F + RH
Sbjct: 60 EKPFACDICGRKFATLHTRDRH 81
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTL 654
E+C + F L H +H+ QK F C +C +F Q T L H + + E F C +
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE--KPFACDI 67
Query: 655 CGKKFVKNYSLYEHMKRH 672
CG+KF ++ H K H
Sbjct: 68 CGRKFATLHTRDRHTKIH 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 53 PMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSE 112
P+E CD + F+ +L HI+ +H K C IC ++F + L QH H+
Sbjct: 8 PVESCD-------RRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 113 QKGFVCDLCGASF 125
+K F CD+CG F
Sbjct: 60 EKPFACDICGRKF 72
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 645 ELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTT 704
E Y C ++F + +L H++ H+ +P++C IC F + + +H + H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGE 60
Query: 705 RPYLCTICSATFKTARALKQHGRTHIKSR 733
+P+ C IC F T +H + H++ +
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 113 QKGFVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSD 170
++ + C + C F Q++ L +H + + + F+C +C + F ++ L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP--FQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 171 VRPYKCDICGHGFKLNYDMLRH 192
+P+ CDICG F + RH
Sbjct: 60 EKPFACDICGRKFATLHTRDRH 81
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 342 KDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLE 399
+ ++C V CD+ F + L H IH+ ++ F C +C +F Q L H + H E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG--E 60
Query: 400 YKFKCILCDRKFHRNSKLNSHMRTH 424
F C +C RKF + H + H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 561 RSYTC--DQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQK 618
R Y C + C ++ S L HI+ +H K C C ++F L QH H+ +K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 619 SFVCELCGASF 629
F C++CG F
Sbjct: 62 PFACDICGRKF 72
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
C + F + L H IH+ QK F C +C +F Q + L H + + E F C +CG
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP--FACDICG 69
Query: 153 KKFVKNYSLYEHMKRH 168
+KF ++ H K H
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 289 CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSC 346
CPV C F+ K L +H++ H+ ++ + C C + + L+ HI++ H K +C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFAC 65
Query: 347 DVCDKSFVNRAGLRLHKLIHSEER 370
D+C + F H IH ++
Sbjct: 66 DICGRKFATLHTRDRHTKIHLRQK 89
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 255 CSETFKSKPSLRAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERS 314
C F K +L HI + T QC +C F+ L H++TH+ E+
Sbjct: 12 CDRRFSQKTNLDTHIR---------IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 315 YTCHHCGKQLCGASNLSLHIKSVHLKIKD 343
+ C CG++ H K +HL+ KD
Sbjct: 63 FACDICGRKFATLHTRDRHTK-IHLRQKD 90
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 533 YSC--EQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIK 590
Y+C E C +FS K+++ H + H + + C C + S L HI+ H K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQHTGLNQHIR-THTGEK 61
Query: 591 KHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+C+ C + F +L +H+ +H QK
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 141 ELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNI 200
E Y C ++F + +L H++ H+ +P++C IC F + + +H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 201 IHNCNLCSATFKTARGLKQHEKKHM 225
C++C F T +H K H+
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHL 86
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
C C ++F+ L +HI+ H K CDICG+ F +H+ IH QK
Sbjct: 35 FQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 428 RPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTH 481
+PYKCD C+ F++ ++ HK VH+ +PY+C +C A F R ++LK H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTH 729
+PYKCD C F+ ++ HK VH+ +PY C IC A F LK H R H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAK 397
K + CD C SF + L HK +H+ E+ + C++CGA F + L H ++H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVR 428
++ + CD C ASF+ + L +HK +H E ++C +C +F+R + L +H R HS +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTG--EKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Query: 429 P 429
P
Sbjct: 73 P 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQK 114
CD+C F +LA H K VH K + C+ICG F + LK H+ IHS +K
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRP 458
+KC C F L SH H+ +PY+C+IC F +++ H R +HS +P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 114 KGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRP 173
K + CD C ASF+ + L SHK + E Y+ C +CG +F + +L H + HS +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYR--CNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 561 RSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+ Y CD+C Y LA+H K VH K + C C F A L+ H+ +HS +K
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEE 141
K + CD C SF L H +H+ +K + C++CGA F + + L +H + + E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 618 KSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRP 677
K + C+ C ASF+ + L SHK + E Y+ C +CG +F + +L H + HS +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYR--CNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 590 KKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEE 645
K + C+ C SF L H VH+ +K + C +CGA F + L +H + + E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 312 ERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
++ Y C C NL+ H K+VH K + C++C F A L+ H IHS E+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 172 RPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKH 224
+PYKCD C F+ ++ HK + CN+C A F LK H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIK 335
+C C+ +F K L SH H+ E+ Y C+ CG Q +NL H +
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
++C C F +L H H+ +PY+C+ICG F ++ H + +HS +P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSN 199
++C C F +L H H+ +PY+C+ICG F ++ H + +HS
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSG 70
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 533 YSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIK 583
Y C++C+ F K ++ H H + Y C+ CG Q + L H +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGE--KPYRCNICGAQFNRPANLKTHTR 66
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLC 464
C + + ++S L +H+RTH+ +PY CD C F + ++ H R H+ RP+QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 72
Query: 465 SASFKRSSHLKQHGKTHI 482
+F RS HL H K H
Sbjct: 73 DRAFSRSDHLALHMKRHF 90
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 340 KIKDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDL--CGASFKQRPALWAHKKLHD 395
+ H+CD C K++ + L+ H H+ E+ + CD CG F + L H + H
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 396 AKLEYKFKCILCDRKFHRNSKLNSHMRTH 424
F+C CDR F R+ L HM+ H
Sbjct: 63 GHRP--FQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 373 VCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPY 430
CD CG ++ + L AH + H + Y C KF R+ +L H R H+ RP+
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 431 KCDICEQHFKFNYDIQMH 448
+C C++ F + + +H
Sbjct: 68 QCQKCDRAFSRSDHLALH 85
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 151 CGKKFVKNYSLYEHMKRHSDVRPYKCDI--CGHGFKLNYDMLRHKQDVHSNIIHNCNLCS 208
CGK + K+ L H++ H+ +PY CD CG F + ++ RH + + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 209 ATFKTARGLKQHEKKHM 225
F + L H K+H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 30/98 (30%)
Query: 88 HWCDI--CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYK 145
H CD CGK++ +S LK H H+ +K + CD G
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG----------------------- 43
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGF 183
CG KF ++ L H ++H+ RP++C C F
Sbjct: 44 -----CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF 76
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 292 CKLTFTDKRKLKSHLKTHSIERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVC 349
C T+T LK+HL+TH+ E+ Y C CG + + L+ H + H + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 72
Query: 350 DKSFVNRAGLRLHKLIH 366
D++F L LH H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 625 CGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICG 684
CG ++ + + L +H + + E Y + CG KF ++ L H ++H+ RP++C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 685 HGF 687
F
Sbjct: 74 RAF 76
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 588 KIKKHSCE--NCAKSFFSLAELRQHSPVHSEQKSFVCEL--CGASFKQRTCLWSHKKWNH 643
+ H+C+ C K++ + L+ H H+ +K + C+ CG F + L H +
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH--YRK 60
Query: 644 EELIYKFECTLCGKKFVKNYSLYEHMKRH 672
F+C C + F ++ L HMKRH
Sbjct: 61 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 64 CGKHFTSSQSLARHIKCVHLKIKHHWCDI--CGKSFFAASELKQHSFIHSEQKGFVCDLC 121
CGK +T S L H++ H K + CD CG F + EL +H H+ + F C C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 122 GASFKQRSCLWSHKK 136
+F + L H K
Sbjct: 73 DRAFSRSDHLALHMK 87
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 562 SYTCD--QCGKQLSYAKTLANHIKGVHLKIKKHSCE--NCAKSFFSLAELRQHSPVHSEQ 617
++TCD CGK + + L H++ H K + C+ C F EL +H H+
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 618 KSFVCELCGASFKQRTCLWSHKK 640
+ F C+ C +F + L H K
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMK 87
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 510 CNMMLMKCQLLHSHLNTQDNKINYSCE--QCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQ 567
C K L +HL T + Y C+ C +F+ ++ +H + H R + C +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--RPFQCQK 71
Query: 568 CGKQLSYAKTLANHIK 583
C + S + LA H+K
Sbjct: 72 CDRAFSRSDHLALHMK 87
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLC 464
C + + ++S L +H+RTH+ +PY CD C F + ++ H R H+ RP+QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 71
Query: 465 SASFKRSSHLKQHGKTHI 482
+F RS HL H K H
Sbjct: 72 DRAFSRSDHLALHMKRHF 89
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 340 KIKDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDL--CGASFKQRPALWAHKKLHD 395
+ H+CD C K++ + L+ H H+ E+ + CD CG F + L H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 396 AKLEYKFKCILCDRKFHRNSKLNSHMRTH 424
F+C CDR F R+ L HM+ H
Sbjct: 62 GHRP--FQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 373 VCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPY 430
CD CG ++ + L AH + H + Y C KF R+ +L H R H+ RP+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 431 KCDICEQHFKFNYDIQMH 448
+C C++ F + + +H
Sbjct: 67 QCQKCDRAFSRSDHLALH 84
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 151 CGKKFVKNYSLYEHMKRHSDVRPYKCDI--CGHGFKLNYDMLRHKQDVHSNIIHNCNLCS 208
CGK + K+ L H++ H+ +PY CD CG F + ++ RH + + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 209 ATFKTARGLKQHEKKHM 225
F + L H K+H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 30/98 (30%)
Query: 88 HWCDI--CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYK 145
H CD CGK++ +S LK H H+ +K + CD G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG----------------------- 42
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGF 183
CG KF ++ L H ++H+ RP++C C F
Sbjct: 43 -----CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF 75
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 292 CKLTFTDKRKLKSHLKTHSIERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDVC 349
C T+T LK+HL+TH+ E+ Y C CG + + L+ H + H + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 71
Query: 350 DKSFVNRAGLRLH 362
D++F L LH
Sbjct: 72 DRAFSRSDHLALH 84
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 625 CGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICG 684
CG ++ + + L +H + + E Y + CG KF ++ L H ++H+ RP++C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 685 HGF 687
F
Sbjct: 73 RAF 75
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 588 KIKKHSCE--NCAKSFFSLAELRQHSPVHSEQKSFVCEL--CGASFKQRTCLWSHKKWNH 643
+ H+C+ C K++ + L+ H H+ +K + C+ CG F + L H +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH--YRK 59
Query: 644 EELIYKFECTLCGKKFVKNYSLYEHMKRH 672
F+C C + F ++ L HMKRH
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 64 CGKHFTSSQSLARHIKCVHLKIKHHWCDI--CGKSFFAASELKQHSFIHSEQKGFVCDLC 121
CGK +T S L H++ H K + CD CG F + EL +H H+ + F C C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 122 GASFKQRSCLWSHKK 136
+F + L H K
Sbjct: 72 DRAFSRSDHLALHMK 86
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 562 SYTCD--QCGKQLSYAKTLANHIKGVHLKIKKHSCE--NCAKSFFSLAELRQHSPVHSEQ 617
++TCD CGK + + L H++ H K + C+ C F EL +H H+
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 618 KSFVCELCGASFKQ 631
+ F C+ C +F +
Sbjct: 64 RPFQCQKCDRAFSR 77
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 510 CNMMLMKCQLLHSHLNTQDNKINYSCE--QCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQ 567
C K L +HL T + Y C+ C +F+ ++ +H + H R + C +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--RPFQCQK 70
Query: 568 CGKQLSYAKTLANHIK 583
C + S + LA H+K
Sbjct: 71 CDRAFSRSDHLALHMK 86
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSA 466
C + F S+ + HM H +RPY C +C + FK + + H + +H+ I+PY+C +C+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAK 73
Query: 467 SF 468
F
Sbjct: 74 RF 75
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 655 CGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSA 714
CGK F HM H +RPY C +CG FK+ + ++ H + +H+ +PY C IC+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAK 73
Query: 715 TF 716
F
Sbjct: 74 RF 75
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 615 SEQKSFVCELCGASFKQRTCLWSHKKWNHEEL---IYKFECTLCGKKFVKNYSLYEHMKR 671
S K + C+ CG SF ++ ++ H + + + C +CGKKF + L HMK
Sbjct: 6 SGDKLYPCQ-CGKSFTHKS-----QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 672 HSDVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARA 721
H+ ++PY+C+IC F RH T C+ +++ A+A
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRH------------VTSCTKSYEAAKA 97
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 63 QCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCG 122
QCGK FT RH+ +HL ++ + C +CGK F L H IH+ K + C++C
Sbjct: 14 QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 123 ASFKQRSCLWSH 134
F R H
Sbjct: 73 KRFMWRDSFHRH 84
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 377 CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICE 436
CG SF + H +H Y C +C +KF L HM+ H+ ++PY+C+IC
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG--CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 437 QHFKFNYDIQMH 448
+ F + H
Sbjct: 73 KRFMWRDSFHRH 84
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
+ C +CGKKF + L HMK H+ ++PY+C+IC F RH
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 533 YSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKH 592
Y C QC F+ KS +H HL R Y C CGK+ L H+K +H IK +
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGL--RPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPY 66
Query: 593 SCENCAKSFFSLAELRQH 610
C CAK F +H
Sbjct: 67 ECNICAKRFMWRDSFHRH 84
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 292 CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDK 351
C +FT K + H+ H R Y C CGK+ +L H+K +H IK + C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAK 73
Query: 352 SFVNRAGLRLH 362
F+ R H
Sbjct: 74 RFMWRDSFHRH 84
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 93 CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCG 152
CGKSF S+ +H +H + + C +CG FK + L H K H + +EC +C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK-PYECNICA 72
Query: 153 KKFVKNYSLYEHM 165
K+F+ S + H+
Sbjct: 73 KRFMWRDSFHRHV 85
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 597 CAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCG 656
C KSF ++ +H +H + + C +CG FK + L H K + I +EC +C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH--TGIKPYECNICA 72
Query: 657 KKFVKNYSLYEHM 669
K+F+ S + H+
Sbjct: 73 KRFMWRDSFHRHV 85
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 310 SIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEE 369
S ++ Y C CGK S H+ S+HL ++ + C VC K F + L H IH+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 370 RGFVCDLCGASFKQRPALWAH 390
+ + C++C F R + H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 349 CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCD 408
C KSF +++ H +H R + C +CG FK + L H K+H Y +C +C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY--ECNICA 72
Query: 409 RKFHRNSKLNSHMRT 423
++F + H+ +
Sbjct: 73 KRFMWRDSFHRHVTS 87
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 563 YTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKSFVC 622
Y C QCGK ++ H+ +HL ++ + C C K F L H +H+ K + C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 623 ELCGASFKQRTCLWSH 638
+C F R H
Sbjct: 69 NICAKRFMWRDSFHRH 84
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQH 106
C CGK F L H+K +H IK + C+IC K F +H
Sbjct: 40 CGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRH 84
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 556 LPAIGRSYTCD--QCGKQLSYAKTLANHIKGVHLKIKKHSC--ENCAKSFFSLAELRQHS 611
LP + + Y C CG + L H+ H K C E C K F SL L +HS
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Query: 612 PVHSEQKSFVCEL--CGASFKQRTCLWSHKKWNHEELIYKFECTL--CGKKFVKNYSLYE 667
H+ +K+F C+ C F + + H H I + C CGK F K+ L
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 668 HMKRHSDVRPYKC--DICGHGFKLNYDMLRHKQDVHS 702
H H+ PY+C + C F L + RH++ VH+
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHA 160
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 292 CKLTFTDKRKLKSHLKTHSIERSYTCHH--CGKQLCGASNLSLHIKSVHLKIKDHSCDV- 348
C + KL++HL H+ E+ + C C K +L+ H H K+ +CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSD 78
Query: 349 -CDKSFVNRAGLRLH--KLIHSEERGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFK 403
CD F +A ++ H + + + +VC CG +FK+ L H+ H +L Y+
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 404 CILCDRKFHRNSKLNSHMRTHSDVRPYKCDIC 435
CD++F S+L H + H+ K D C
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 62/179 (34%), Gaps = 33/179 (18%)
Query: 63 QCGKHFTSSQSLARHIKCVHLKIKHHWC--DICGKSFFAASELKQHSFIHSEQKGFVCDL 120
CG + + L H+ C H K C + C K F + L +HS H+ +K F CD
Sbjct: 19 DCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 121 --CGASFKQRSCLWSHKKWNHEELSYKFECTL--CGKKFVKNYSLYEHMKRHSDVRPYKC 176
C F ++ + H H + C CGK F K+ L H H+ PY+C
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 177 DICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTSILLTCDQC 235
G C F LK+HEK H D C
Sbjct: 138 PHEG--------------------------CDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKC--DICEQHFKFNYDIQMHKRCVHSNIRPYQCTL- 463
C +++N KL +H+ H+ +P+ C + CE+ F + + H H+ + + C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSD 78
Query: 464 -CSASFKRSSHLKQHGKTHIKPEHDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHS 522
C F +++K+H H++K + ++ CH C K L
Sbjct: 79 GCDLRFTTKANMKKH----FNRFHNIK--ICVYVCHFEN--------CGKAFKKHNQLKV 124
Query: 523 HLNTQDNKINYSC--EQCKVQFSCKSDMRKHAKTH 555
H + ++ Y C E C +FS S +++H K H
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 372 FVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
++C CGA++ + L AH H + + K C++ F L H TH+ +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 430 YKCDI--CEQHFKFNYDIQMHKRCVHS-NIRPYQCTL--CSASFKRSSHLKQHGKTHIK 483
+ CD C+ F +++ H H+ I Y C C +FK+ + LK H +H +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 62 DQCGKHFTSSQSLARHIKCVHLKIKHHWCDI--CGKSFFAASELKQH--SFIHSEQKGFV 117
+ C K FTS L RH H K+ CD C F + +K+H F + + +V
Sbjct: 48 EGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV 106
Query: 118 CDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYK 175
C CG +FK+ + L H+ + ++L Y+ C K+F L H K H+ K
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 166
Query: 176 CDICGHGFKLNYDMLRHKQDVHSN 199
D C K L+H + H +
Sbjct: 167 DDSCSFVGKTWTLYLKHVAECHQD 190
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 504 EEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSY 563
+E GC+ + HS +T + + C ++F+ K++M+KH Y
Sbjct: 46 KEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
Query: 564 TC--DQCGKQLSYAKTLANHIKGVHLKIKKHSC--ENCAKSFFSLAELRQHSPVHS 615
C + CGK L H + H + + C E C K F + L++H VH+
Sbjct: 106 VCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSH 134
CD CGKSF +S+L +H H+ +K + CD CG +F QRS L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDA 396
CD C KSF + + L H+ H+ E+ + CD CG +F QR L H ++H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 640 KWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQD 699
+W E +++C CGK F + L +H + H+ +PYKCD CG F ++ H +
Sbjct: 10 EWQQRER-RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR- 67
Query: 700 VHSTTRP 706
VH+ + P
Sbjct: 68 VHTGSGP 74
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 426 DVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHI 482
+ R YKCD C + F + D+ H+R H+ +PY+C C +F + SHL H + H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 401 KFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRP 458
++KC C + F +S L+ H RTH+ +PYKCD C + F + H R VH+ P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGP 74
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 561 RSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHS 615
R Y CD+CGK S++ L+ H + H K + C+ C K+F + L H VH+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 136 KWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 192
+W E +++C CGK F + L +H + H+ +PYKCD CG F ++ H
Sbjct: 10 EWQQRERR-RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 55 EKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHS 111
E+ CD+CGK F+ S L++H + H K + CD CGK+F S L H +H+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 590 KKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSH 638
+++ C+ C KSF ++L +H H+ +K + C+ CG +F QR+ L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 313 RSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHS 367
R Y C CGK +S+LS H + H K + CD C K+F+ R+ L H +H+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 674 DVRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTHIKS 732
+ R YKCD CG F + D+ +H++ H+ +PY C C F L H R H S
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 368 EERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDV 427
E R + CD CG SF L H++ H E +KC C + F + S L H R H+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTG--EKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Query: 428 RP 429
P
Sbjct: 73 GP 74
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 527 QDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANH 581
Q + Y C++C FS SD+ KH +TH + Y CD+CGK L H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGE--KPYKCDECGKAFIQRSHLIGH 65
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 112 EQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDV 171
E++ + CD CG SF S L H++ + E YK C CGK F++ L H + H+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK--CDECGKAFIQRSHLIGHHRVHTGS 72
Query: 172 RP 173
P
Sbjct: 73 GP 74
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 616 EQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDV 675
E++ + C+ CG SF + L H++ + E YK C CGK F++ L H + H+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK--CDECGKAFIQRSHLIGHHRVHTGS 72
Query: 676 RP 677
P
Sbjct: 73 GP 74
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLH 333
+C C +F+ L H +TH+ E+ Y C CGK S+L H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 170 DVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTS 227
+ R YKCD CG F + D+ +H++ + C+ C F L H + H S
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 111 SEQKGFVCDL--CGASFKQRSCLWSHKKWNH-EELSYKFECTLCGKKFVKNYSLYEHMKR 167
S G CD CG F R L HKK+ H + S+ CGK F L EHMK
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 168 HSDVRPYKCDICG 180
HSD R Y C+ G
Sbjct: 63 HSDTRDYICEFSG 75
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 625 CGASFKQRTCLWSHKKWNHEELIYK--FECT--LCGKKFVKNYSLYEHMKRHSDVRPYKC 680
CG F R L HKK+ H I++ F C CGK F L EHMK HSD R Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQH---IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Query: 681 DICG 684
+ G
Sbjct: 72 EFSG 75
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 52 GPMEKCDIMCD--QCGKHFTSSQSLARHIKCVHLKIKHHWCD--ICGKSFFAASELKQHS 107
G + CD CG+ F++ Q L H K H+ K C CGKSF LK+H
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 108 FIHSEQKGFVCDLCGAS 124
+HS+ + ++C+ G S
Sbjct: 61 KLHSDTRDYICEFSGPS 77
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 568 CGKQLSYAKTLANHIKGVHLKIKKHSCEN--CAKSFFSLAELRQHSPVHSEQKSFVCELC 625
CG+ S + L +H K H+ K SC C KSF L++H +HS+ + ++CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 626 GAS 628
G S
Sbjct: 75 GPS 77
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 320 CGKQLCGASNLSLHIKSVHLKIKDHSCD--VCDKSFVNRAGLRLHKLIHSEERGFVCDLC 377
CG+ L+ H K H+ K SC C KSF + L+ H +HS+ R ++C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 378 GAS 380
G S
Sbjct: 75 GPS 77
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 367 SEERGFVCDL--CGASFKQRPALWAHKKL-HDAKLEYKFKCILCDRKFHRNSKLNSHMRT 423
S G CD CG F R L HKK H + + C + F+ L HM+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 424 HSDVRPYKCDI 434
HSD R Y C+
Sbjct: 63 HSDTRDYICEF 73
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 290 PVCKLTFTDKRKLKSHLKTHSIERSYTCHHCG 321
P C +F K+ LK H+K HS R Y C G
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 427 VRPYKCDI--CEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTH 481
+RPY C + C++ F + ++ H R +H+ +P+QC +C +F RS HL H +TH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKR 450
CDR+F R+ +L H+R H+ +P++C IC ++F + + H R
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 675 VRPYKCDI--CGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTH 729
+RPY C + C F + ++ RH + +H+ +P+ C IC F + L H RTH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 578 LANHIKGVHLKIKKHSC--ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCL 635
+ N + V K++ ++C E+C + F EL +H +H+ QK F C +C +F + L
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 636 WSH 638
+H
Sbjct: 66 TTH 68
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 84 KIKHHWCDI--CGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSH 134
K++ + C + C + F + EL +H IH+ QK F C +C +F + L +H
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 370 RGFVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHS 425
R + C + C F + L H ++H + F+C +C R F R+ L +H+RTH+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 32 MEPETILETLGHQFES-QLFTGPMEKCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWC 90
MEP + L + + + P+E CD + F+ S L RHI+ +H K C
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCD-------RRFSRSDELTRHIR-IHTGQKPFQC 52
Query: 91 DICGKSFFAASELKQHSFIHS 111
IC ++F + L H H+
Sbjct: 53 RICMRNFSRSDHLTTHIRTHT 73
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 340 KIKDHSCDV--CDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLH 394
K++ ++C V CD+ F L H IH+ ++ F C +C +F + L H + H
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 274 MEPQTILETYNILSQ------CPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLC 325
MEP + N + CPV C F+ +L H++ H+ ++ + C C +
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 326 GASNLSLHIKS 336
+ +L+ HI++
Sbjct: 61 RSDHLTTHIRT 71
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 151 CGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGF 183
C ++F ++ L H++ H+ +P++C IC F
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 655 CGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGF 687
C ++F ++ L H++ H+ +P++C IC F
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVH 453
F+C +C R F R+ L +H+RTH+ +P+ CDIC + F + + + H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVH 197
F+C +C + F ++ L H++ H+ +P+ CDICG F + + RH+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVH 701
F+C +C + F ++ L H++ H+ +P+ CDICG F + + RH+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 427 VRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKT-HIKP 484
++P++C IC ++F + + H R H+ +P+ C +C F RS K+H HI P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHILP 58
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 85 IKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNH 139
+K C IC ++F + L H H+ +K F CD+CG F + H+ H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFI 109
C C ++F+ S L HI+ H K CDICG+ F + E K+H I
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLH--IKSVHLKIKDHS 345
QC +C F+ L +H++TH+ E+ + C CG++ + H I+ + ++D
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKV 64
Query: 346 CDVCDKSF-VNRAGLRLHKLI 365
++ K++ + RL KL+
Sbjct: 65 EELLSKNYHLENEVARLKKLV 85
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 341 IKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKL 393
+K C +C ++F L H H+ E+ F CD+CG F + H+ +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 589 IKKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNH 643
+K C C ++F L H H+ +K F C++CG F + H+ H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 372 FVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYK 431
F C +C +F + L H + H E F C +C RKF R+ + H R + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFARSDERKRH-RDIQHILPIL 60
Query: 432 CDICEQHFKFNYDIQ 446
D E+ NY ++
Sbjct: 61 EDKVEELLSKNYHLE 75
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 675 VRPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQH 725
++P++C IC F + + H + H+ +P+ C IC F + K+H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRH 50
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHST 703
+ C CGK F ++ L +H + H+ +PYKC CG F N ++ H Q +H++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTS 67
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSN 199
+ C CGK F ++ L +H + H+ +PYKC CG F N ++ H Q +H++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTS 67
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKR 450
E + C+ C + F R+S L H R H+ +PYKC C + F N + H+R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSD 426
E+ + C CG +F + L H+++H E +KC+ C + F +NS L +H R H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTG--EKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKK 136
K + C CGK+F +S L QH +H+ +K + C CG +F Q S L +H++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTH 729
+PY C CG F + +++H Q VH+ +PY C C F L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDA 396
K + C C K+F + L H+ +H+ E+ + C CG +F Q L H+++H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 590 KKHSCENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKK 640
K + C C K+F + L QH VH+ +K + C CG +F Q + L +H++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 428 RPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTH 481
+PY C C + F + + H+R VH+ +PY+C C +F ++S L H + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 113 QKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSD 170
+K + C CG +F + S L H++ + E YK C CGK F +N L H + H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK--CLECGKAFSQNSGLINHQRIHTS 67
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 617 QKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSD 674
+K + C CG +F + + L H++ + E YK C CGK F +N L H + H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK--CLECGKAFSQNSGLINHQRIHTS 67
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 312 ERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIHS 367
E+ Y C CGK +S L H + VH K + C C K+F +GL H+ IH+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 61 CDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHS 111
C +CGK F+ S L +H + VH K + C CGK+F S L H IH+
Sbjct: 17 CVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 561 RSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKS 619
+ Y C +CGK S + L H + VH K + C C K+F + L H +H+ S
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 172 RPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKKHMTS 227
+PY C CG F + +++H++ + C C F GL H++ H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 255 CSETFKSKPSLRAHIWKCQMEPQTILETYN---ILSQCPVCKLTFTDKRKLKSHLKTHSI 311
C TF + L H+ ME E N +CP +F K KL +H++ H+
Sbjct: 31 CDRTFSTMHELVTHV---TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 312 ERSYTC--HHCGKQLCGASNLSLHIKSVHLKIKDHSCDV--CDKSFVNRAGLRLHKLIHS 367
E+ + C CGK + NL +H K H K C+ CD+ F N + + H +H+
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 368 EER 370
++
Sbjct: 147 SDK 149
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 374 CDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCD 433
C G SFK + L H ++H + + C + F R+ L H RTH+ +P+KC+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 434 I--CEQHFKFNYDIQMH 448
C++ F + D + H
Sbjct: 125 FEGCDRRFANSSDRKKH 141
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 64 CGKHFTSSQSLARHIKCVHLKIKHHWCDIC--------GKSFFAASELKQHSFIHSEQKG 115
C + F++ L H+ H+ +C GKSF A +L H +H+ +K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 116 FVCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHS 169
F C CG F + L HK+ + E +K E C ++F + +HM H+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 648 YKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDI--CGHGFKLNYDMLRHKQDVHSTTR 705
Y EC GK F Y L H++ H+ +P+ C CG F + ++ HK+ H+ +
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEK 119
Query: 706 PYLCTI--CSATFKTARALKQHGRTHIKSRT 734
P+ C C F + K+H H ++
Sbjct: 120 PFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 568 CGKQLSYAKTLANHIKGVHLKIKKHS--------CENCAKSFFSLAELRQHSPVHSEQKS 619
C + S L H+ H+ + + C KSF + +L H VH+ +K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 620 FVCEL--CGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHS 673
F C CG F + L HK+ + E +K E C ++F + +HM H+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSN 199
F C +C + F + L H + H++ +PY C +C F ++RH Q +HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHS 702
F C +C + F + L H + H++ +PY C +C F ++RH Q +HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
F C +C R F R L H R+H++ +PY C +C + F + H + +HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAH-KKLHDAKL 398
C+VC ++F + L+ H H+ E+ + C LC +F +R L H +K+H L
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNH 139
C++C ++F LK+H H+ +K + C LC +F +R L H + H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 594 CENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNH 643
CE C ++F L++H H+ +K + C LC +F +R L H + H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 430 YKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGK 479
+ C++C + F ++ H R H+N +PY C LC+ +F R L +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVH 338
C VC F + LK H ++H+ E+ Y C C + L H + +H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 372 FVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSH 420
FVC++C +F ++ L H + H E + C LC+R F R L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN--EKPYPCGLCNRAFTRRDLLIRH 49
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 147 ECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGF----KLNYDMLRH 192
EC+ CGK F NY L H++ H+ +PYKC+ C + L Y + RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 651 ECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGF----KLNYDMLRH 696
EC+ CGK F NY L H++ H+ +PYKC+ C + L Y + RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 403 KCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICE 436
+C C + F N LN H+RTH+ +PYKC+ CE
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVH 338
+C C F L HL+TH+ E+ Y C C ++L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 594 CENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCLWSHKKWNHE 644
C C K F S L H H+ +K + CE C + Q+T L H + +H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLH 394
C C K F + L +H H+ E+ + C+ C + Q+ +L H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 145 KFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH-KQDVHS 198
K+ C CG + K L +H++ H+DVRPY C C FK ++ +H K HS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 649 KFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH-KQDVHS 702
K+ C CG + K L +H++ H+DVRPY C C FK ++ +H K HS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 401 KFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMH 448
K+ C C + + S L H+RTH+DVRPY C C FK ++ H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 430 YKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKT 480
Y C+ C K ++ H R H+++RPY CT C+ SFK +L +H K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 678 YKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTHIKSR 733
Y C+ CG K ML+ H+ RPY CT C+ +FKT L +H ++ S+
Sbjct: 2 YICEECGIRXK-KPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 88 HWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKK 136
+ C+ CG S LK+H H++ + + C C SFK + L H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKS 336
C C + LK H++TH+ R Y C +C NL+ H+KS
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQC 461
+ CI+C R + + L H HS + Y C CE+ F + + H+ R YQC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA-EYRTKHEIHHTGERRYQC 81
Query: 462 TLCSASFKRSSHLKQHGKTHIKPEH--DLKTKMNLFTCHQCQSTE 504
C SF Q +HIK H D L+ H C+S +
Sbjct: 82 LACGKSFINY----QFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQ 122
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDV 348
C VCK ++ L+ H HS E+ Y C +C K A + H + H + + C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQCLA 83
Query: 349 CDKSFVNRAGLRLH-KLIHSEE 369
C KSF+N + H K +HS++
Sbjct: 84 CGKSFINYQFMSSHIKSVHSQD 105
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 528 DNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLANHIKGVHL 587
D ++ Y C CK + C + +R+H H + + Y C C K A+ H + H
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIH--SWEKKYPCRYCEKVFPLAEYRTKH-EIHHT 74
Query: 588 KIKKHSCENCAKSFFSLAELRQH-SPVHSEQKS 619
+++ C C KSF + + H VHS+ S
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIKSVHSQDPS 107
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 87 HHWCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKF 146
++ C +C +S+ + L++H IHS +K + C C F H+ H ++
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE--IHHTGERRY 79
Query: 147 ECTLCGKKFVKNYSLYEHMK 166
+C CGK F+ + H+K
Sbjct: 80 QCLACGKSFINYQFMSSHIK 99
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCI 405
C VC +S+V LR H IHS E+ + C C F H+ H E +++C+
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG--ERRYQCL 82
Query: 406 LCDRKFHRNSKLNSHMRT 423
C + F ++SH+++
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 563 YTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELR-QHSPVHSEQKSFV 621
Y C C + +L H +H KK+ C C K F LAE R +H H+ ++ +
Sbjct: 23 YICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEK-VFPLAEYRTKHEIHHTGERRYQ 80
Query: 622 CELCGASFKQRTCLWSHKKWNHEE 645
C CG SF + SH K H +
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQ 104
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 60 MCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKGFVCD 119
+C C + + SL RH +H K + C C K F A +H H+ ++ + C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 120 LCGASFKQRSCLWSHKKWNHEE 141
CG SF + SH K H +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQ 104
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 246 NRQLLQCSLCSETFKSKPSLRAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSH 305
R C +C ++ SLR H + ++ C C+ F H
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHF---------NIHSWEKKYPCRYCEKVFPLAEYRTKH 69
Query: 306 LKTHSIERSYTCHHCGKQLCGASNLSLHIKSVH 338
H+ ER Y C CGK +S HIKSVH
Sbjct: 70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 520 LHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGKQLSYAKTLA 579
L H N + Y C C+ F KH H R Y C CGK + ++
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE--RRYQCLACGKSFINYQFMS 95
Query: 580 NHIKGVH 586
+HIK VH
Sbjct: 96 SHIKSVH 102
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 116 FVCDLCGASFKQRSCLWSHKK-WNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPY 174
++C +C S+ CL S ++ +N K+ C C K F +H H+ R Y
Sbjct: 23 YICIVCKRSY---VCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 175 KCDICGHGFKLNYD-MLRHKQDVHSN 199
+C CG F +NY M H + VHS
Sbjct: 80 QCLACGKSF-INYQFMSSHIKSVHSQ 104
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 620 FVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYK 679
++C +C S+ T L H +N K+ C C K F +H H+ R Y+
Sbjct: 23 YICIVCKRSYVCLTSLRRH--FNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 680 CDICGHGFKLNYD-MLRHKQDVHS 702
C CG F +NY M H + VHS
Sbjct: 81 CLACGKSF-INYQFMSSHIKSVHS 103
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 111 SEQKGFVCDLCGASFKQRSCL-WSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKR 167
S G C++CG + +Q++ L W +K + +F C CGK+F K S+ H +
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 615 SEQKSFVCELCGASFKQRTCL-WSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHMKR 671
S CE+CG + +Q+ L W +K +F C CGK+F K S+ H +
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 367 SEERGFVCDLCGASFKQRPAL-WAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSH 420
S G C++CG + +Q+ +L W +K + +F C C ++F + + +H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 312 ERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHKLIH 366
ER + C+ CGK AS LS H + HL + SC C K F +++ + H +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFK-CILCDRKFHRNSKLNSHMRTHSD 426
ER F C+ CG +++ L H++ H L Y+ + C C + F S++N H++ H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH---LGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQ 113
C+ CGK + + L+RH + HL + C CGK F SE+ +H +H +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 561 RSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPVHSEQKS 619
R + C+ CGK A L+ H + HL + SC C K F +E+ +H VH + +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSN 199
F C CGK + L H + H RP C CG F+ ++ RH + VH N
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQN 57
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRH 696
F C CGK + L H + H RP C CG F+ ++ RH
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 428 RPYKCDICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTH 481
RP+ C+ C + ++ + H+R H RP C C F+ S + +H K H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDAK 397
C+ C K++ + +GL H+ H R C CG F+ + + H K+H K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 703 TTRPYLCTICSATFKTARALKQHGRTHIKSRT 734
+ RP+ C C T++ A L +H R H+ R
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRP 32
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHSN 455
E F C C + + S L+ H R H RP C C + F+ ++ H + VH N
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQN 57
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTICSATFKTARALKQHGRTH 729
RP+ C+ CG ++ + RH++ H RP C C F+ + +H + H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 89 WCDICGKSFFAASELKQHSFIHSEQKGFVCDLCGASFKQRSCLWSHKK 136
+C+ CGK++ AS L +H H + C CG F+ +S + H K
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 113 QKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFE-CTLCGKKFVKNYSLYEHMKRHSD 170
++ F C+ CG +++ S L H++ + L Y+ C CGK F + H+K H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH---LGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 418 NSHMRTHSDVRPYKCDICEQHFKFNYDIQMHKRCVHS-NIRPYQCTLCSASFKRSSHLKQ 476
S RTHS +PY+C IC F + ++MH H+ N+ + C C R S L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 477 H 477
H
Sbjct: 64 H 64
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 613 VHSEQKSFVCELCGASFKQRTCLWSHKKWNHEELIYKFECTLCGKKFVKNYSLYEHM-KR 671
HS +K + C +C A F Q + H H E + KF C C + L H+ K+
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 672 HSDVRP 677
HS P
Sbjct: 69 HSYSGP 74
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 366 HSEERGFVCDLCGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMR 422
HS E+ + C +C A F Q + H + KF C CD R S L H+R
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 110 HSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHM-KRH 168
HS +K + C +C A F Q + H H E KF C C + L H+ K+H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 169 SDVRP 173
S P
Sbjct: 70 SYSGP 74
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 613 VHSEQKSFVCELCGASFKQRTCLWSHKKWNHEE--LIYKFECTLCGKKFVKNYSLYEHMK 670
H+ +K + C C +F+Q+ L H K H+ + F C+ CGK F + + M
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT----MA 64
Query: 671 RHSD 674
RH+D
Sbjct: 65 RHAD 68
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 418 NSHMRTHSDVRPYKCDICEQHFKFNYDIQMH-KRCVHSNIRP--YQCTLCSASFKRSSHL 474
S RTH+ +PY C C++ F+ + MH KR N P + C+ C +F R + +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 475 KQHGKTHIKPE 485
+H P+
Sbjct: 64 ARHADNCAGPD 74
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 109 IHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEE--LSYKFECTLCGKKFVKNYSLYEHMK 166
H+ +K + C C +F+Q+ L H K H+ + F C+ CGK F + + M
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT----MA 64
Query: 167 RHSD 170
RH+D
Sbjct: 65 RHAD 68
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 25/87 (28%)
Query: 304 SHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHK 363
S +TH+ E+ Y C HC K L +H K H D +FV A
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH-----------DPNFVPAA------ 47
Query: 364 LIHSEERGFVCDLCGASFKQRPALWAH 390
FVC CG +F +R + H
Sbjct: 48 --------FVCSKCGKTFTRRNTMARH 66
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 365 IHSEERGFVCDLCGASFKQRPALWAH-KKLHDAK-LEYKFKCILCDRKFHRNSKLNSHM 421
H+ E+ + C C +F+Q+ L H K+ HD + F C C + F R + + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 346 CDVCDKSFVNRAGLRLHKLIHSEER 370
CD CDKSF R+ L H++IH+ E+
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 396 AKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E F+C CD+ F + S LNSH H+ +P
Sbjct: 7 GTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLHDAK 397
E+ F CD C SF+QR AL +H+ +H +
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 113 QKGFVCDLCGASFKQRSCLWSHK 135
+K F CD C SF+QRS L SH+
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHR 32
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 559 IGRSYTCDQCGKQLSYAKTLANHIKGVHLKIKKHSCE 595
+G+ Y C CGK S L HIK VH + H C+
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 311 IERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDV 348
+ + Y C CGK +L+ HIK VH + H C V
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRPYLCTI 711
+PY C CG GF + H + VH++ RP+ C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 655 CGKKFVKNYSLYEHMKRHSDVRPYKC--DICGHGFKLNYDMLRHKQDVHSTTRPYLCTI- 711
CG + KN+ L H+ +H+ +P+ C + C GF + + RH H+ + + C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSD 69
Query: 712 -CSATFKTARALKQH 725
C F T +K+H
Sbjct: 70 GCDLRFTTKANMKKH 84
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 151 CGKKFVKNYSLYEHMKRHSDVRPYKC--DICGHGFKLNYDMLRHK--QDVHSNIIHNCNL 206
CG + KN+ L H+ +H+ +P+ C + C GF + + RH N + +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 207 CSATFKTARGLKQH 220
C F T +K+H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 595 ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRT 633
E C K F SL L +HS H+ +K+F C+ G + T
Sbjct: 39 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT 77
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 27/87 (31%)
Query: 292 CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDVCDK 351
C + KL++HL H+ E+ + C G C+K
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEG---------------------------CEK 43
Query: 352 SFVNRAGLRLHKLIHSEERGFVCDLCG 378
F + L H L H+ E+ F CD G
Sbjct: 44 GFTSLHHLTRHSLTHTGEKNFTCDSDG 70
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 176 CDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTARGLKQHEKK 223
C +CG F RH + +H+ + C C ATF ++ GL +H K
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 344 HSCDVCDKSFVNRAGLRLH-KLIHSEERGFVCDLCGASFKQRPALWAH 390
H C VC +SF ++ H +L+H+ + F C C A+F P L H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRH 75
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVH 338
CPVC +F K + HL+ + + C +C + L+ HI H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E FKC C ++F +NS+L+SH R H+ +P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
F+C CGK+F +N L+ H + H+ +P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
F+C CGK+F +N L+ H + H+ +P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E +KC C + FHR++ LN H R H+ RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHI 482
+PY+C +CS +F + +HL QH KTH
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHT 36
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQK 114
CDICGKSF S L +HS +H+ +K
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
K CD+C KSF R+ L H ++H+ E+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
+PY CD CG F L+ +++RH Q +H+ +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 172 RPYKCDICGHGFKLNYDMLRHKQDVHSN 199
+PY CD CG F L+ +++RH Q +H+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHTG 37
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQK 114
K + CD CGK+F ++EL +H IH+ +K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
+PYKC +CG F+++ +++H VHS RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHSGERP 40
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTH 481
+PY+C +C +F+ SSHL QH H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 172 RPYKCDICGHGFKLNYDMLRHKQDVHSN 199
+PYKC +CG F+++ +++H VHS
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHSG 37
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 454 SNIRPYQCTLCSASFKRSSHLKQHGKTHI 482
+ I+P+QC C SF RS HL H K H+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 428 RPYKCDICEQHFKFNYDIQMHKRCVHSNIRP 458
+PYKCD+C + F++ + +H+R +H+ +P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQR-IHTGEKP 40
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
K + CDVC KSF + L +H+ IH+ E+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 454 SNIRPYQCTLCSASFKRSSHLKQHGKTHI 482
+ I+P+QC C SF RS HL H K H+
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 274 MEPQTILETYNILS-QCPVCKLTFTDKRKLKSHLKTHSI---ERSYTCHHCGKQLCGASN 329
+E Q LE + S CP C+ RK LK H + +TCHHCGKQL +
Sbjct: 21 LEEQWYLEIVDKGSVSCPTCQAV---GRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAG 77
Query: 330 LSLHIKSVH 338
+ H+ + H
Sbjct: 78 MKYHVMANH 86
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 407 CDRKFHRNSKLNSHMRTHSDVRPYKCDI--CEQHFKFNYDIQMHKR 450
C + + ++S L +H RTH+ +P+ C CE+ F + ++ H+R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 84 KIKHHWCD--ICGKSFFAASELKQHSFIHSEQKGFVCDLCG 122
+I+ H C CGK++F +S LK H+ H+ +K F C G
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG 54
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 377 CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTH 424
CG ++ + L AH + H + + C+R+F R+ +L+ H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHI 482
+P+QC C F RS HLK H +TH
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E FKC C + F+ NS+ SH R+HS +P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
F+C CGK F N Y H + HS +P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
F+C CGK F N Y H + HS +P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E FKC+ C + F R S LN H + H+ +P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E F+C C ++F +NS L+SH R H+ +P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
F+C CGK+F +N L+ H + H+ +P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
F+C CGK+F +N L+ H + H+ +P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 372 FVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
+VC CG +FK+ L H+ H +L Y+ CD++F S+L H + H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 430 YKCDIC 435
K D C
Sbjct: 62 KKDDSC 67
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 372 FVCDL--CGASFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
+VC CG +FK+ L H+ H +L Y+ CD++F S+L H + H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 430 YKCDIC 435
K D C
Sbjct: 62 KKDDSC 67
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
+PYKC+ CG G+ +++ H Q VH+ RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMH-QKVHTGERP 40
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 428 RPYKCDICEQHFKFNYDIQMHKRCVHSNIRP 458
+PYKC+ C + + +++ MH++ VH+ RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQK-VHTGERP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
FECT CGK F + +L H K H+ +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
FECT CGK F + +L H K H+ +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E ++KC C + F RNS+L+ H + H+ +P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 454 SNIRPYQCTL--CSASFKRSSHLKQHGKTHI 482
+ I+P+QCT C SF RS HL H K H+
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E +KC C + F +NS L +H R H+ V+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
++C CGK F +N L H + H+ V+P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
++C CGK F +N L H + H+ V+P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 369 ERGFVCDLCGASFKQRPALWAHKKLHDAK 397
ER ++C +CG +F R L H+K+H +
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
RPY C +CG F ++++H Q +H+ +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKH-QKIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHIK 483
+PY C +C +F S+HL QH + H +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEE 369
K +SC+VC K+FV A L H +H++E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQ 113
K + C++CGK+F ++ L QH +H+++
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2ELO|A Chain A, Solution Structure Of The 12th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 289 CPVCKLTFTDKRKLKSHLKTHSIERS 314
CPVC+ +F++ R +KSH+KT+ E S
Sbjct: 12 CPVCEKSFSEDRLIKSHIKTNHPEVS 37
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E FKC C + F +N L SH+R H+ +P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
+EC++CGK F K L+ H + H+ +P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
+EC++CGK F K L+ H + H+ +P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
K + C +C KSF ++ L +H+ IH+ E+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHIK 483
RPY C C +F R SHL +H K H +
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFR 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSD 170
+EC+ CGK F++N L H + HS
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSG 37
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSD 674
+EC+ CGK F++N L H + HS
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSG 37
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSD 426
E ++C C + F RNS+L H RTHS
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 313 RSYTCHHCGKQLCGASNLSLHIKSVHLKIK 342
++Y C +C K+ +SNL HIK+ H K K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 428 RPYKCDICEQHFKFNYDIQMHKRCVHSNIRP 458
+PY+CD+C + F + + H+R VHS +P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQR-VHSGEKP 40
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
K + CDVC K+F + A L H+ +HS E+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEE 369
K H CD+C K F ++ L+ HKL+H+ +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 86 KHHWCDICGKSFFAASELKQHSFIHSEQ 113
K H CD+CGK F + LK H +H+
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 373 VCDLCGASFKQRPALWAHKKLHDA 396
+CD+CG FK + L +HK LH A
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLHTA 34
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 367 SEERGFVCDLCGASFKQRPALWAHKKLHDA 396
S E+ + C CG SF QR +L H++LH
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 356 RAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAH-KKLH 394
+A LR+H+ IH +R F C+ C KQ L H KK H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
+PYKC+ CG F + RH Q +H+ +P
Sbjct: 11 KPYKCNECGKAFSQTSKLARH-QRIHTGEKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
K H+CD C K+F + LR+H+ +H E+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTHSDVRP 429
+KC +C ++F ++S L +H R H+ +P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 85 IKHHWCDICGKSFFAASELKQHSFIHSEQK 114
+K + C+ CGK+F S L H IH+ +K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 399 EYKFKCILCDRKFHRNSKLNSHMRTHSDVRP 429
E +KC+ C + F NS H R H+ RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
+PYKC+ CG F N ++RH+ +H+ +P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHR-GIHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHSDVRP 173
+EC CGK F + Y L H + H+ +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHSDVRP 677
+EC CGK F + Y L H + H+ +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 676 RPYKCDICGHGFKLNYDMLRHKQDVHSTTRP 706
+PYKC+ CG F N + RH++ VH+ +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRR-VHTGGKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 88 HWCDICGKSFFAASELKQHSFIHSEQK 114
H C+ CGKSF ++ L QH IH+ +K
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 457 RPYQCTLCSASFKRSSHLKQHGKTHIK 483
+PYQC+ C SF S L QH TH +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTR 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 342 KDHSCDVCDKSFVNRAGLRLHKLIHSEER 370
K + C VC K+F +R L +H+ IHS ++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.134 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,145,520
Number of Sequences: 62578
Number of extensions: 888035
Number of successful extensions: 6055
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3331
Number of HSP's gapped (non-prelim): 2239
length of query: 734
length of database: 14,973,337
effective HSP length: 106
effective length of query: 628
effective length of database: 8,340,069
effective search space: 5237563332
effective search space used: 5237563332
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)