RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy366
(734 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 37.4 bits (86), Expect = 0.024
Identities = 72/463 (15%), Positives = 114/463 (24%), Gaps = 42/463 (9%)
Query: 169 SDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNL--CSATFKTARGLKQHEKKHMT 226
+ RP C C F + RH + C+ C +F L +H + H
Sbjct: 29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHN 88
Query: 227 SILLTCDQ---------CHSTEEAGCKCNRQLLQCSLCSETFKS-KPSLRAHIWKCQMEP 276
+ + S+ + + S S S P L + +
Sbjct: 89 NPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRN 148
Query: 277 QTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKS 336
+ + P S K S S + S +
Sbjct: 149 NPLPGNNSSSVNTPQSNSLHPPLPA-NSLSKDPSSNLSLLISSNV--STSIPSSSENSPL 205
Query: 337 VHLKIKDHSCDVCDKSFVNRAGLRLHKLIHSEERGFVCDLCGASFKQRPALWAHKKLHDA 396
S + + S L S + +
Sbjct: 206 SSSYSIPSSSSDQNLENSSS----------SLPLTTNSQLSPKSLLSQSPSSLSSSDSSS 255
Query: 397 KLEYKFKCILCDRKFHRNSKLNSHMRTHSDVR-PYKCDICEQHFKFNYDIQMHKRCVHSN 455
+ L +S S + P K C F + + H R V+ +
Sbjct: 256 SASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHS 315
Query: 456 I---RPYQCT--LCSASFKRSSHLKQHGKTHIKPEHDLKTKMNLFTCHQCQSTEEAGCKC 510
+P+ C LC F R+ LK+H H K L S
Sbjct: 316 GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPA---KEKLLNSSSKFSPLLNNEPP 372
Query: 511 NMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSCKSDMRKHAKTHLPAIGRSYTCDQCGK 570
+ L + + + C F S++ H THL + C K
Sbjct: 373 QSLQQYKDLKNDKKSETL----SNS--CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSK 426
Query: 571 QLSYAKTLANHIKGVHLKIKKHSCENCAKSFFSLAELRQHSPV 613
+ L H K H C KSF +L H
Sbjct: 427 SFNRHYNLIPHKKI-HTNHAPLLCSIL-KSFRRDLDLSNHGKD 467
Score = 34.3 bits (78), Expect = 0.26
Identities = 72/438 (16%), Positives = 124/438 (28%), Gaps = 41/438 (9%)
Query: 313 RSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHSCDV--CDKSFVNRAGLRLHKLIHSEER 370
R +C +C +L+ HI+S H K C CDKSF L H H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRS-HTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNP 90
Query: 371 GFVCDLCGAS--FKQRPALWAHKKLHDAKLEYKFKCILCDRKFHRNSKLNSHMRTHSDVR 428
+ K + + + L + +
Sbjct: 91 SDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNP 150
Query: 429 PYKC----DICEQHFKFNYDIQMHKRCVHSNIRPYQCTLCSASFKRSSHLKQHGKTHIKP 484
Q + + + + + S S + +
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 485 EHDLKTKMNLFTCHQCQSTEEAGCKCNMMLMKCQLLHSHLNTQDNKINYSCEQCKVQFSC 544
+ NL S+ N L LL ++ + + S + S
Sbjct: 211 IPSSSSDQNL-----ENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSS-SASESPRSS 264
Query: 545 KSDMRKHAKTHLP-------AIGRSYTCDQCGKQLSYAKTLANHIKGVHLKI---KKHSC 594
+ + QC S + L H++ V+ K SC
Sbjct: 265 LPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSC 324
Query: 595 --ENCAKSFFSLAELRQHSPVHSEQKSFVCELCGASFKQRTCL-------WSHKKWNHEE 645
C K F L++H +H+ +L +S K L K +
Sbjct: 325 PYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKND 384
Query: 646 LIYKFECTL--CGKKFVKNYSLYEHMKRHSDVRP--YKCDICGHGFKLNYDMLRHKQDVH 701
K E C + F ++ +L H+ H RP K C F +Y+++ HK+ H
Sbjct: 385 K--KSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKI-H 441
Query: 702 STTRPYLCTICSATFKTA 719
+ P LC+I + +
Sbjct: 442 TNHAPLLCSILKSFRRDL 459
Score = 33.1 bits (75), Expect = 0.55
Identities = 74/411 (18%), Positives = 116/411 (28%), Gaps = 22/411 (5%)
Query: 90 CDICGKSFFAASELKQHSFIHSEQKGFVC--DLCGASFKQRSCLWSHKKWNHEELSYKFE 147
C C SF L +H H+ +K C C SF + L H + +H S
Sbjct: 36 CPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSD-LN 94
Query: 148 CTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLC 207
K S + L D+ S N
Sbjct: 95 SKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLP---DLLSISNLRNNPL 151
Query: 208 SATFKTARGLKQHEKKHMTSILLTCDQCHSTEEAGCKCNR--QLLQCSLCSETFKSKPSL 265
++ Q H + + S+ + + + S + S S+
Sbjct: 152 PGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSI 211
Query: 266 RAHIWKCQMEPQTILETYNILSQCPVCKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLC 325
+ +E + SQ L L S + S S
Sbjct: 212 PSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQ 271
Query: 326 GASNLSLHIKSVHLKIKDHSCDVCDKSFVNRAGLRLHK--LIHSEE--RGFVCD--LCGA 379
+S S C+ SF + L H + HS E + F C LCG
Sbjct: 272 SSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGK 331
Query: 380 SFKQRPALWAHKKLHDAKLEYKFKCILCDRKFHR--NSKLNSHMRTHSDVRPYKCDICEQ 437
F + AL H LH + K K + KF N++ ++ + D++ K
Sbjct: 332 LFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLS 391
Query: 438 HFKFNYDIQMHKRCVHSN------IRPYQCTLCSASFKRSSHLKQHGKTHI 482
+ + +H + CS SF R +L H K H
Sbjct: 392 NSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
Score = 30.8 bits (69), Expect = 2.7
Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 10/140 (7%)
Query: 64 CGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELK-------QHSFIHSEQKGF 116
CGK F+ + +L RHI H I + S + L Q K
Sbjct: 329 CGKLFSRNDALKRHILL-HTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKS 387
Query: 117 VCDL--CGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPY 174
C +FK+ S L H + Y + C K F ++Y+L H K H++ P
Sbjct: 388 ETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447
Query: 175 KCDICGHGFKLNYDMLRHKQ 194
C I + K
Sbjct: 448 LCSILKSFRRDLDLSNHGKD 467
Score = 30.4 bits (68), Expect = 3.8
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 59 IMCDQCGKHFTSSQSLARHIKCVHLKI---KHHWCDI--CGKSFFAASELKQHSFIHSEQ 113
I QC F+ S L RH++ V+ K C CGK F LK+H +H+
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349
Query: 114 KGFVCDLCGASFKQRSCL-----WSHKKWNHEELSYKFECTL--CGKKFVKNYSLYEHMK 166
L +S K L S +++ + K E C + F ++ +L H+
Sbjct: 350 SPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHII 409
Query: 167 RHSDVRP--YKCDICGHGFKLNYDMLRHKQDVHSNIIHNCNLCSATFKTA 214
H RP K C F +Y+++ HK+ ++ C++ + +
Sbjct: 410 THLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDL 459
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 34.7 bits (79), Expect = 0.16
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 413 RNSKLNSHMRTHSDVRPYKCDI--CEQHFKFNYDIQMHKRCVHSNI-------------- 456
RN S M D +PYKC + C + +K ++ H H N
Sbjct: 333 RNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF 392
Query: 457 ----RPYQCTLCSASFKRSSHLKQH 477
+PY+C +C +K + LK H
Sbjct: 393 SAKDKPYRCEVCDKRYKNLNGLKYH 417
Score = 32.4 bits (73), Expect = 0.85
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 21/76 (27%)
Query: 674 DVRPYKCDICG------HGFKLNYDMLRHKQDVHST--------------TRPYLCTICS 713
D +PYKC + G + L Y ML Q+ +PY C +C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 714 ATFKTARALKQHGRTH 729
+K LK H R H
Sbjct: 406 KRYKNLNGLKYH-RKH 420
Score = 30.1 bits (67), Expect = 5.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 288 QCPV--CKLTFTDKRKLKSHLKTHSIERSYTCHHCGKQLCGASNLSLHIKSVHLKIKDHS 345
+CPV C + ++ LK H+ H ++L + K K +
Sbjct: 351 KCPVEGCNKKYKNQNGLKYHMLHG---------HQNQKLHENPSPEKM-NIFSAKDKPYR 400
Query: 346 CDVCDKSFVNRAGLRLHK 363
C+VCDK + N GL+ H+
Sbjct: 401 CEVCDKRYKNLNGLKYHR 418
Score = 29.7 bits (66), Expect = 5.5
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 56 KCDIMCDQCGKHFTSSQSLARHIKCVHLKIKHHWCDICGKSFFAASELKQHSFIHSEQKG 115
KC + + C K + + L H+ H K H S K + F ++ K
Sbjct: 351 KCPV--EGCNKKYKNQNGLKYHMLHGHQNQKLHE---------NPSPEKMNIFS-AKDKP 398
Query: 116 FVCDLCGASFKQRSCLWSHKKWNH 139
+ C++C +K + L H+K +H
Sbjct: 399 YRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 30.1 bits (68), Expect = 0.22
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 417 LNSHMRTHSDVRPYKCDICEQHFK 440
L HMRTH+ +PYKC +C + F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 30.1 bits (68), Expect = 0.24
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 160 SLYEHMKRHSDVRPYKCDICGHGFK 184
+L HM+ H+ +PYKC +CG F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 30.1 bits (68), Expect = 0.24
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 664 SLYEHMKRHSDVRPYKCDICGHGFK 688
+L HM+ H+ +PYKC +CG F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 27.0 bits (60), Expect = 3.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 302 LKSHLKTHSIERSYTCHHCGKQ 323
L+ H++TH+ E+ Y C CGK
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKS 23
Score = 26.6 bits (59), Expect = 4.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 359 LRLHKLIHSEERGFVCDLCGASFKQ 383
LR H H+ E+ + C +CG SF
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 25.8 bits (57), Expect = 6.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 102 ELKQHSFIHSEQKGFVCDLCGASFKQ 127
L++H H+ +K + C +CG SF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 33.7 bits (77), Expect = 0.44
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 51 TGPMEKCDIMCDQCGKHFTSSQSLARH-IKCVHLKI--KHHWCDICGKSFFAASELKQHS 107
+ M+ + C C KH+ S+S+A H C + H C I E K H
Sbjct: 400 SSSMDVDTVECRNC-KHYIPSRSIALHEAYCSRHNVVCPHDGCGIV----LRVEEAKNH- 453
Query: 108 FIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYSLYEHMKR 167
+H C+ CG +F+Q + H K HE L +C CG K + +H
Sbjct: 454 -VH-------CEKCGQAFQQGE-MEKHMKVFHEPL----QCP-CGVVLEKE-QMVQHQAS 498
Query: 168 HSDVRPYKCDICG 180
+R C CG
Sbjct: 499 TCPLRLITCRFCG 511
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 30.3 bits (69), Expect = 2.9
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 647 IYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICG 684
+ + C+ CG ++ + D +C CG
Sbjct: 120 LKRVRCSKCGNQYYDEDVIKFIE----DGLIPRCPKCG 153
Score = 29.5 bits (67), Expect = 5.3
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 139 HEELSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICG 180
H L + C+ CG ++ + D +C CG
Sbjct: 117 HGSL-KRVRCSKCGNQYYDEDVIKFIE----DGLIPRCPKCG 153
>gnl|CDD|213729 TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB
family. This model represents a region of about 50
amino acids found in a number of small proteins in a
wide range of bacteria. The region begins usually with
the initiator Met and contains two CxxC motifs separated
by 17 amino acids. One member of this family is has been
noted as a putative regulatory protein, designated FmdB
(SP:Q50229, PMID:8841393 ). Most members of this family
have a C-terminal region containing highly degenerate
sequence, such as
SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in
Mycobacterium tuberculosis and
VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces
avermitilis. These low complexity regions, which are not
included in the model, resemble low-complexity
C-terminal regions of some heterocycle-containing
bacteriocin precursors [Regulatory functions, DNA
interactions].
Length = 52
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 647 IYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHG 686
IY++ CT CG +F E +++ SD C CG
Sbjct: 3 IYEYRCTACGHRF-------EVLQKMSDDPLATCPECGSP 35
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 30.9 bits (70), Expect = 3.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 707 YLCTICSATFKTARALKQHGRT 728
Y+C +C A F + L +H RT
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRT 95
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.7 bits (59), Expect = 3.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 402 FKCILCDRKFHRNSKLNSHMRTH 424
++C C + F S L HMRTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 8.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRH 168
+ C CGK F +L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 8.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRH 672
+ C CGK F +L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 8.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTH 309
+CP C F K L+ H++TH
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 27.7 bits (61), Expect = 3.5
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 146 FECTLCGKKFVKNYSLYEHMKRHS 169
+EC +CG+ ++K S+ H+++H+
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHN 29
Score = 27.7 bits (61), Expect = 3.5
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 650 FECTLCGKKFVKNYSLYEHMKRHS 673
+EC +CG+ ++K S+ H+++H+
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHN 29
>gnl|CDD|237118 PRK12496, PRK12496, hypothetical protein; Provisional.
Length = 164
Score = 29.2 bits (66), Expect = 4.5
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 646 LIYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHK 697
+ ++ C C KK+ ++Y C+ICG K R K
Sbjct: 124 IKWRKVCKGCKKKYPEDYPDDV------------CEICGSPVKRKMVKRRLK 163
Score = 29.2 bits (66), Expect = 5.2
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 142 LSYKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKLNYDMLRHK 193
+ ++ C C KK+ ++Y C+ICG K R K
Sbjct: 124 IKWRKVCKGCKKKYPEDYPDDV------------CEICGSPVKRKMVKRRLK 163
>gnl|CDD|235290 PRK04351, PRK04351, hypothetical protein; Provisional.
Length = 149
Score = 28.3 bits (64), Expect = 7.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 144 YKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKL 185
Y +EC CG+++++ KR + + Y+C C KL
Sbjct: 111 YLYECQSCGQQYLR--------KRRINTKRYRCGKCRGKLKL 144
Score = 28.3 bits (64), Expect = 7.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 648 YKFECTLCGKKFVKNYSLYEHMKRHSDVRPYKCDICGHGFKL 689
Y +EC CG+++++ KR + + Y+C C KL
Sbjct: 111 YLYECQSCGQQYLR--------KRRINTKRYRCGKCRGKLKL 144
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
Length = 463
Score = 29.4 bits (66), Expect = 8.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 108 FIHSEQKGFVCDLCGASFKQRSCLWSHKKWNHEELSYKFECTLCGKKFVKNYS-LYEHMK 166
FI +E CD +C W+ +KW H K L + F K+ + +YE +K
Sbjct: 323 FIVTENSDLHCD---------ACTWTSRKWKHTSGKQK----LLVRMFYKSTNPVYETIK 369
Query: 167 RHSD 170
+S+
Sbjct: 370 NYSE 373
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.4 bits (56), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 288 QCPVCKLTFTDKRKLKSHLKTH 309
+CP C +F+ K LK HL+TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.134 0.447
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,724,612
Number of extensions: 2990979
Number of successful extensions: 4124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4058
Number of HSP's successfully gapped: 200
Length of query: 734
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 630
Effective length of database: 6,324,786
Effective search space: 3984615180
Effective search space used: 3984615180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (27.9 bits)