BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3660
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVA0|Y9705_DROME Cold shock domain-containing protein CG9705 OS=Drosophila
melanogaster GN=CG9705 PE=1 SV=1
Length = 143
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 29/106 (27%)
Query: 19 MLSPQEPHLHSNN-----TLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRA 73
+L+ + P LH N+ +L LPSPIITRRTRT S S RA
Sbjct: 10 LLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTAST--------------------SARA 49
Query: 74 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD----YVIMP 115
L+NPV TG +K F R+KGHGFITP++G VF H+SD YV MP
Sbjct: 50 LENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMP 95
>sp|Q9Y2V2|CHSP1_HUMAN Calcium-regulated heat stable protein 1 OS=Homo sapiens GN=CARHSP1
PE=1 SV=2
Length = 147
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 42/76 (55%), Gaps = 20/76 (26%)
Query: 35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
+PSP+ TRRTRT F AT RA Q PV G K FCRSKGHGF
Sbjct: 39 VPSPLPTRRTRT----FSATV----------------RASQGPVYKGVCKCFCRSKGHGF 78
Query: 95 ITPDSGEPAVFVHISD 110
ITP G P +F+HISD
Sbjct: 79 ITPADGGPDIFLHISD 94
>sp|Q9WU49|CHSP1_RAT Calcium-regulated heat stable protein 1 OS=Rattus norvegicus
GN=Carhsp1 PE=1 SV=1
Length = 147
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 42/76 (55%), Gaps = 20/76 (26%)
Query: 35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
+PSP+ TRRTRT F AT RA Q PV G K FCRSKGHGF
Sbjct: 39 VPSPLPTRRTRT----FSATV----------------RASQGPVYKGVCKCFCRSKGHGF 78
Query: 95 ITPDSGEPAVFVHISD 110
ITP G P +F+HISD
Sbjct: 79 ITPADGGPDIFLHISD 94
>sp|Q9CR86|CHSP1_MOUSE Calcium-regulated heat stable protein 1 OS=Mus musculus GN=Carhsp1
PE=1 SV=1
Length = 148
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 42/76 (55%), Gaps = 20/76 (26%)
Query: 35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
+PSP+ TRRTRT F AT RA Q PV G K FCRSKGHGF
Sbjct: 40 VPSPLPTRRTRT----FSATV----------------RASQGPVYKGVCKCFCRSKGHGF 79
Query: 95 ITPDSGEPAVFVHISD 110
ITP G P +F+HISD
Sbjct: 80 ITPADGGPDIFLHISD 95
>sp|Q63430|CSDC2_RAT Cold shock domain-containing protein C2 OS=Rattus norvegicus
GN=Csdc2 PE=2 SV=3
Length = 154
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 36/118 (30%)
Query: 9 ENKKPALSSPMLSPQEP-------HLHSNNTL---------SLPSPIITRRTRTESMDFK 52
E+ P + P+ SP+ P H S+ LPSP+ T+RTRT +
Sbjct: 4 ESTSPPVVPPLHSPKSPVWPTFPFHRESSRIWERGGGVSPRDLPSPLPTKRTRT----YS 59
Query: 53 ATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
ATA+ S G PV G K+F RS+GHGFITP++G +FVH+SD
Sbjct: 60 ATARASAG----------------PVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 101
>sp|Q9Y534|CSDC2_HUMAN Cold shock domain-containing protein C2 OS=Homo sapiens GN=CSDC2
PE=2 SV=1
Length = 153
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 20/76 (26%)
Query: 35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
LPSP+ T+RTRT + ATA+ S G PV G K+F RS+GHGF
Sbjct: 45 LPSPLPTKRTRT----YSATARASAG----------------PVFKGVCKQFSRSQGHGF 84
Query: 95 ITPDSGEPAVFVHISD 110
ITP++G +FVH+SD
Sbjct: 85 ITPENGSEDIFVHVSD 100
>sp|Q91YQ3|CSDC2_MOUSE Cold shock domain-containing protein C2 OS=Mus musculus GN=Csdc2
PE=2 SV=2
Length = 154
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 20/76 (26%)
Query: 35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
LPSP+ T+RTRT + ATA+ S G PV G K+F RS+GHGF
Sbjct: 46 LPSPLPTKRTRT----YSATARASAG----------------PVFKGVCKQFSRSQGHGF 85
Query: 95 ITPDSGEPAVFVHISD 110
ITP++G +FVH+SD
Sbjct: 86 ITPENGSEDIFVHVSD 101
>sp|P55390|Y4CH_RHISN Probable cold shock protein y4cH OS=Rhizobium sp. (strain NGR234)
GN=NGR_a00060 PE=4 SV=1
Length = 69
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F +KG GFI PD G VFVHIS
Sbjct: 4 TGTVKWFNATKGFGFIQPDDGSADVFVHIS 33
>sp|P0A981|CSPG_SHIFL Cold shock-like protein CspG OS=Shigella flexneri GN=cspG PE=3 SV=1
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH +
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFT 35
>sp|P0A978|CSPG_ECOLI Cold shock-like protein CspG OS=Escherichia coli (strain K12)
GN=cspG PE=1 SV=1
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH +
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFT 35
>sp|P0A979|CSPG_ECOL6 Cold shock-like protein CspG OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspG PE=3 SV=1
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH +
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFT 35
>sp|P0A980|CSPG_ECO57 Cold shock-like protein CspG OS=Escherichia coli O157:H7 GN=cspG
PE=3 SV=1
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH +
Sbjct: 6 TGLVKWFNADKGFGFITPDDGSKDVFVHFT 35
>sp|P0A9Y4|CSPA_SHIFL Cold shock protein CspA OS=Shigella flexneri GN=cspA PE=3 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A9Y2|CSPA_SALTY Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cspA PE=3 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A9Y3|CSPA_SALTI Cold shock protein CspA OS=Salmonella typhi GN=cspA PE=3 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A9Y5|CSPA_SALEN Cold shock protein CspA OS=Salmonella enteritidis GN=cspA PE=3 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|Q46664|CSPA_ENTAK Major cold shock protein OS=Enterobacter aerogenes (strain ATCC
13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 /
NCIMB 10102 / NCTC 10006) GN=cspA PE=3 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A9X9|CSPA_ECOLI Cold shock protein CspA OS=Escherichia coli (strain K12) GN=cspA
PE=1 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A9Y0|CSPA_ECOL6 Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=cspA PE=3 SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A9Y1|CSPA_ECO57 Cold shock protein CspA OS=Escherichia coli O157:H7 GN=cspA PE=3
SV=2
Length = 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITPD G VFVH S
Sbjct: 6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35
>sp|P0A352|CSPA_BORPE Cold shock-like protein CspA OS=Bordetella pertussis (strain Tohama
I / ATCC BAA-589 / NCTC 13251) GN=cspA PE=3 SV=1
Length = 67
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 78 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
+ETG +K F KG+GFITP++G +F H S+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSE 33
>sp|P0A354|CSPA_BORPA Cold shock-like protein CspA OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=cspA PE=3 SV=1
Length = 67
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 78 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
+ETG +K F KG+GFITP++G +F H S+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSE 33
>sp|P0A353|CSPA_BORBR Cold shock-like protein CspA OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=cspA PE=3 SV=1
Length = 67
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 78 VETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
+ETG +K F KG+GFITP++G +F H S+
Sbjct: 1 METGVVKWFNAEKGYGFITPEAGGKDLFAHFSE 33
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDYV 112
TGK+ F SKG+GFITPD G +FVH S V
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIV 44
>sp|P0A975|CSPE_SHIFL Cold shock-like protein CspE OS=Shigella flexneri GN=cspE PE=3 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|E0J1Q3|CSPE_ECOLW Cold shock-like protein CspE OS=Escherichia coli (strain ATCC 9637
/ CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
GN=cspE PE=1 SV=1
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|P0A972|CSPE_ECOLI Cold shock-like protein CspE OS=Escherichia coli (strain K12)
GN=cspE PE=1 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|P0A973|CSPE_ECOL6 Cold shock-like protein CspE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspE PE=3 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|P0A974|CSPE_ECO57 Cold shock-like protein CspE OS=Escherichia coli O157:H7 GN=cspE
PE=3 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G +K F SKG GFITP+ G VFVH S
Sbjct: 6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPSDGSKDVFVHFS 34
>sp|Q83RI9|CSPC_SHIFL Cold shock-like protein CspC OS=Shigella flexneri GN=cspC PE=3 SV=3
Length = 69
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|P0A9Y9|CSPC_SALTY Cold shock-like protein CspC OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=cspC PE=3 SV=2
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|P0A9Z0|CSPC_SALTI Cold shock-like protein CspC OS=Salmonella typhi GN=cspC PE=3 SV=2
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|E0J500|CSPC_ECOLW Cold shock-like protein CspC OS=Escherichia coli (strain ATCC 9637
/ CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
GN=cspC PE=1 SV=1
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|P0A9Y6|CSPC_ECOLI Cold shock-like protein CspC OS=Escherichia coli (strain K12)
GN=cspC PE=1 SV=2
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|P0A9Y7|CSPC_ECOL6 Cold shock-like protein CspC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspC PE=3 SV=2
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|P0A9Y8|CSPC_ECO57 Cold shock-like protein CspC OS=Escherichia coli O157:H7 GN=cspC
PE=3 SV=2
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
G++K F SKG GFITP G VFVH S
Sbjct: 6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34
>sp|Q01761|CSP7_STRC2 Cold shock-like protein 7.0 OS=Streptomyces clavuligerus (strain
ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB
12785 / NRRL 3585 / VKM Ac-602) GN=SC7.0 PE=1 SV=1
Length = 66
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFI D G P VFVH S
Sbjct: 3 TGTVKWFNAEKGFGFIAQDGGGPDVFVHYS 32
>sp|Q9Z3S6|CSPA_RHIME Cold shock protein CspA OS=Rhizobium meliloti (strain 1021) GN=cspA
PE=2 SV=1
Length = 69
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
+G +K F +KG GFI PD G VFVH S
Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATDVFVHAS 32
>sp|Q9S170|CSPG_SHEVD Cold shock-like protein CspG OS=Shewanella violacea (strain JCM
10179 / CIP 106290 / LMG 19151 / DSS12) GN=cspG PE=2
SV=1
Length = 70
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHI 108
TG +K F KG GFIT D+G VFVH
Sbjct: 6 TGLVKWFNEEKGFGFITQDNGGDDVFVHF 34
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHISDYV 112
GK+ F KG+GFITPD G +FVH S V
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIV 44
>sp|P54584|CSP_ARTGO Cold shock protein OS=Arthrobacter globiformis GN=csp PE=2 SV=1
Length = 67
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 81 GKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
G +K F KG GFITPD + VFVH S+
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGDVFVHYSE 33
>sp|Q9KN00|CSPA_VIBCH Cold shock-like protein CspA OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=cspA PE=3 SV=1
Length = 70
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHISDYV 112
TG +K F +KG GFI+ D+G VFVH V
Sbjct: 6 TGSVKWFNETKGFGFISQDNGGQDVFVHFKSIV 38
>sp|Q9S1B7|CSPA_SHEVD Cold shock-like protein CspA OS=Shewanella violacea (strain JCM
10179 / CIP 106290 / LMG 19151 / DSS12) GN=cspA PE=2
SV=1
Length = 70
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHI 108
TG +K F KG GF+T D+G VFVH
Sbjct: 6 TGTVKWFNEDKGFGFLTQDNGGADVFVHF 34
>sp|Q9KL16|CSPV_VIBCH Cold shock protein CspV OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cspV PE=2 SV=1
Length = 70
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F +KG GF+T D+G VFVH +
Sbjct: 6 TGSVKWFNETKGFGFLTQDNGGNDVFVHFN 35
>sp|P58726|CSPJ_SALTI Cold shock-like protein CspJ OS=Salmonella typhi GN=cspJ PE=3 SV=1
Length = 70
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITP G VFVH S
Sbjct: 6 TGLVKWFNPEKGFGFITPKDGSKDVFVHFS 35
>sp|P0CL01|CSPJ_SALTY Cold shock-like protein CspJ OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=cspJ PE=3 SV=1
Length = 70
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
TG +K F KG GFITP G VFVH S
Sbjct: 6 TGLVKWFNPEKGFGFITPKDGSKDVFVHFS 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,108,255
Number of Sequences: 539616
Number of extensions: 2030534
Number of successful extensions: 4062
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3959
Number of HSP's gapped (non-prelim): 123
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)