AmiGO: BLAST Results


BLAST match view associations BLAST with CG9705 CG9705 CG9705	protein from Drosophila melanogaster	5.5e-18
BLAST match view associations BLAST with LOC100521547 LOC100521547 LOC100521547 Uncharacterized protein	protein from Sus scrofa	2.0e-10
BLAST match view associations BLAST with Carhsp1 Carhsp1 Carhsp1 calcium regulated heat stable protein 1	protein from Mus musculus	2.0e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Uncharacterized protein	protein from Bos taurus	5.2e-10
BLAST match view associations BLAST with Carhsp1 Carhsp1 Carhsp1 calcium regulated heat stable protein 1	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-09
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	1.8e-09
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Uncharacterized protein	protein from Canis lupus familiaris	3.6e-09
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Cold shock domain-containing protein C2	protein from Homo sapiens	5.9e-09
BLAST match view associations BLAST with Csdc2 Csdc2 Csdc2 cold shock domain containing C2, RNA binding	protein from Mus musculus	5.9e-09
BLAST match view associations BLAST with Csdc2 Csdc2 Csdc2 cold shock domain containing C2, RNA binding	gene from Rattus norvegicus	5.9e-09
BLAST match view associations BLAST with carhsp1 carhsp1 carhsp1 calcium regulated heat stable protein 1	gene_product from Danio rerio	9.7e-09
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Uncharacterized protein	protein from Gallus gallus	1.6e-08
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Cold shock domain containing C2, RNA binding	protein from Bos taurus	2.0e-08
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Uncharacterized protein	protein from Sus scrofa	3.3e-08
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Cold shock domain-containing protein C2	protein from Homo sapiens	2.3e-07
BLAST match view associations BLAST with csdc2a csdc2a csdc2a cold shock domain containing C2, RNA binding a	gene_product from Danio rerio	7.8e-07
BLAST match view associations BLAST with csdc2b csdc2b csdc2b cold shock domain containing C2, RNA binding b	gene_product from Danio rerio	4.0e-05
BLAST match view associations BLAST with SPO_1275 SPO_1275 SPO_1275 cold shock family protein	protein from Ruegeria pomeroyi DSS-3	0.00017
BLAST match view associations BLAST with cspA cspA cspA	protein from Escherichia coli K-12	0.00035
BLAST match view associations BLAST with cspE cspE cspE	protein from Escherichia coli K-12	0.00045
BLAST match view associations BLAST with cspG cspG cspG	protein from Escherichia coli K-12	0.00057
BLAST match view associations BLAST with cspC cspC cspC	protein from Escherichia coli K-12	0.00093
BLAST match view associations BLAST with SPO_0437 SPO_0437 SPO_0437 cold shock family protein	protein from Ruegeria pomeroyi DSS-3	0.00093

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy3660
        (144 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0036661 - symbol:CG9705 species:7227 "Drosophila m...   146  5.5e-18   2
UNIPROTKB|E1C8P8 - symbol:CARHSP1 "Uncharacterized protei...   154  3.5e-11   1
UNIPROTKB|I3LCU9 - symbol:CARHSP1 "Uncharacterized protei...   147  2.0e-10   1
MGI|MGI:1196368 - symbol:Carhsp1 "calcium regulated heat ...   147  2.0e-10   1
UNIPROTKB|Q2NKU4 - symbol:CARHSP1 "Uncharacterized protei...   143  5.2e-10   1
RGD|708415 - symbol:Carhsp1 "calcium regulated heat stabl...   143  5.2e-10   1
UNIPROTKB|H3BNU9 - symbol:CARHSP1 "Calcium-regulated heat...   142  6.6e-10   1
UNIPROTKB|H3BPY5 - symbol:CARHSP1 "Calcium-regulated heat...   142  6.6e-10   1
UNIPROTKB|H3BSW7 - symbol:CARHSP1 "Calcium-regulated heat...   142  6.6e-10   1
UNIPROTKB|H3BUY4 - symbol:CARHSP1 "Calcium-regulated heat...   142  6.6e-10   1
UNIPROTKB|Q9Y2V2 - symbol:CARHSP1 "Calcium-regulated heat...   142  6.6e-10   1
UNIPROTKB|E2R913 - symbol:CARHSP1 "Uncharacterized protei...   140  1.1e-09   1
UNIPROTKB|I3L3X8 - symbol:CARHSP1 "Calcium-regulated heat...   138  1.8e-09   1
UNIPROTKB|E2RRI6 - symbol:CSDC2 "Uncharacterized protein"...   135  3.6e-09   1
UNIPROTKB|Q9Y534 - symbol:CSDC2 "Cold shock domain-contai...   133  5.9e-09   1
MGI|MGI:2146027 - symbol:Csdc2 "cold shock domain contain...   133  5.9e-09   1
RGD|628780 - symbol:Csdc2 "cold shock domain containing C...   133  5.9e-09   1
ZFIN|ZDB-GENE-040426-1479 - symbol:carhsp1 "calcium regul...   131  9.7e-09   1
UNIPROTKB|F1NMV8 - symbol:CSDC2 "Uncharacterized protein"...   129  1.6e-08   1
UNIPROTKB|Q08E16 - symbol:CSDC2 "Cold shock domain contai...   128  2.0e-08   1
UNIPROTKB|F1SRD7 - symbol:CSDC2 "Uncharacterized protein"...   126  3.3e-08   1
UNIPROTKB|H7C4E7 - symbol:CSDC2 "Cold shock domain-contai...   118  2.3e-07   1
ZFIN|ZDB-GENE-040718-442 - symbol:csdc2a "cold shock doma...   113  7.8e-07   1
ZFIN|ZDB-GENE-110419-1 - symbol:csdc2b "cold shock domain...   102  4.0e-05   1
TIGR_CMR|SPO_1275 - symbol:SPO_1275 "cold shock family pr...    91  0.00017   1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia...    88  0.00035   1
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia...    87  0.00045   1
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia...    86  0.00057   1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia...    84  0.00093   1
TIGR_CMR|SPO_0437 - symbol:SPO_0437 "cold shock family pr...    84  0.00093   1


>FB|FBgn0036661 [details] [associations]
            symbol:CG9705 species:7227 "Drosophila melanogaster"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
            Pfam:PF00313 SMART:SM00357 Prosite:PS00352 EMBL:AE014296
            GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 eggNOG:NOG239041 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 OMA:CHVSDIE EMBL:AY060441
            RefSeq:NP_648920.1 RefSeq:NP_730197.1 UniGene:Dm.7196 HSSP:P0A9X9
            ProteinModelPortal:Q9VVA0 SMR:Q9VVA0 MINT:MINT-760000 STRING:Q9VVA0
            PaxDb:Q9VVA0 PRIDE:Q9VVA0 EnsemblMetazoa:FBtr0075324
            EnsemblMetazoa:FBtr0075325 EnsemblMetazoa:FBtr0333607 GeneID:39875
            KEGG:dme:Dmel_CG9705 UCSC:CG9705-RA FlyBase:FBgn0036661
            InParanoid:Q9VVA0 OrthoDB:EOG4STQN2 PhylomeDB:Q9VVA0 ChiTaRS:CG9705
            GenomeRNAi:39875 NextBio:815832 Bgee:Q9VVA0 Uniprot:Q9VVA0
        Length = 143

 Score = 146 (56.5 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query:    70 SNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD----YVIMP 115
             S RAL+NPV TG +K F R+KGHGFITP++G   VF H+SD    YV MP
Sbjct:    46 SARALENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMP 95

 Score = 86 (35.3 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query:    12 KPALSSPMLSPQEPHLHSNN-----TLSLPSPIITRRTRTESMDFKA 53
             +P     +L+ + P LH N+     +L LPSPIITRRTRT S   +A
Sbjct:     3 EPRTPEKLLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARA 49


>UNIPROTKB|E1C8P8 [details] [associations]
            symbol:CARHSP1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR002059
            InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
            GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 CTD:23589 OMA:PDIFVHI
            InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:AADN02023448
            EMBL:AADN02023449 EMBL:AADN02023450 EMBL:AADN02023451
            EMBL:AADN02023452 EMBL:AADN02023453 EMBL:AADN02023454
            IPI:IPI00591072 RefSeq:XP_414938.2 ProteinModelPortal:E1C8P8
            PRIDE:E1C8P8 Ensembl:ENSGALT00000011834 GeneID:416640
            KEGG:gga:416640 NextBio:20820068 Uniprot:E1C8P8
        Length = 152

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 41/103 (39%), Positives = 55/103 (53%)

Query:    10 NKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMD-FKATAQRSK-GSKEQPNF 67
             + +PA S+   SP    LHS ++L LP     RRTR  S    +     S   ++    +
Sbjct:     2 SSEPAASASEQSPSS--LHSPSSLHLPE---NRRTRDRSPSPMRGYLIPSPLPTRRTRTY 56

Query:    68 LISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
               + RA + P+  G  K FCRSKGHGFI+P  G P +FVHISD
Sbjct:    57 SATVRASEGPIYKGVCKCFCRSKGHGFISPADGGPDIFVHISD 99


>UNIPROTKB|I3LCU9 [details] [associations]
            symbol:CARHSP1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
            InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
            GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 OMA:PDIFVHI InterPro:IPR019844
            GeneTree:ENSGT00390000000022 EMBL:FP089531
            Ensembl:ENSSSCT00000026974 Uniprot:I3LCU9
        Length = 158

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/106 (35%), Positives = 52/106 (49%)

Query:     7 PFENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMD-FKATAQRSK-GSKEQ 64
             P    + A+SS    P +P  H ++       + T+R R  S    +     S   ++  
Sbjct:     5 PLSLSRSAMSSEPPPPSQPPTHQSSV-----GLDTQRARDRSPSPLRGNVVPSPLPTRRT 59

Query:    65 PNFLISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
               F  + RA Q P+  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    60 RTFSATVRASQGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 105


>MGI|MGI:1196368 [details] [associations]
            symbol:Carhsp1 "calcium regulated heat stable protein 1"
            species:10090 "Mus musculus" [GO:0000177 "cytoplasmic exosome
            (RNase complex)" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
            [GO:0043488 "regulation of mRNA stability" evidence=IMP]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 MGI:MGI:1196368 GO:GO:0005829 GO:GO:0006355
            GO:GO:0003677 GO:GO:0003730 GO:GO:0000932 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488 CTD:23589
            eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
            OMA:PDIFVHI OrthoDB:EOG4V4390 GO:GO:0043186 InterPro:IPR019844
            EMBL:AF414101 EMBL:AK004711 EMBL:AK002853 EMBL:AK003926
            EMBL:BC011225 IPI:IPI00133349 RefSeq:NP_080097.1 UniGene:Mm.142095
            ProteinModelPortal:Q9CR86 SMR:Q9CR86 STRING:Q9CR86
            PhosphoSite:Q9CR86 PaxDb:Q9CR86 PRIDE:Q9CR86
            Ensembl:ENSMUST00000008537 GeneID:52502 KEGG:mmu:52502
            GeneTree:ENSGT00390000000022 InParanoid:Q9CR86 ChiTaRS:CARHSP1
            NextBio:448331 Bgee:Q9CR86 CleanEx:MM_CARHSP1 Genevestigator:Q9CR86
            GermOnline:ENSMUSG00000008393 Uniprot:Q9CR86
        Length = 148

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 39/97 (40%), Positives = 48/97 (49%)

Query:    16 SSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMD-FKATAQRSK-GSKEQPNFLISNRA 73
             S P   P +P  H  +   L +P    RTR  S    +     S   ++    F  + RA
Sbjct:     3 SEPPPPPLQPPTHQTSVGLLDTP----RTRDRSPSPLRGNVVPSPLPTRRTRTFSATVRA 58

Query:    74 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
              Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 95


>UNIPROTKB|Q2NKU4 [details] [associations]
            symbol:CARHSP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
            InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
            GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 CTD:23589 eggNOG:NOG239041
            HOGENOM:HOG000059524 HOVERGEN:HBG050947 OMA:PDIFVHI
            OrthoDB:EOG4V4390 InterPro:IPR019844 GeneTree:ENSGT00390000000022
            EMBL:DAAA02057413 EMBL:BC111637 IPI:IPI00685329
            RefSeq:NP_001039416.1 UniGene:Bt.88637 Ensembl:ENSBTAT00000001890
            GeneID:506760 KEGG:bta:506760 InParanoid:Q2NKU4 NextBio:20867742
            Uniprot:Q2NKU4
        Length = 147

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/96 (38%), Positives = 48/96 (50%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H ++T  L +     R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPSQPPTHQSSTGLLDTQ--QARDRSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>RGD|708415 [details] [associations]
            symbol:Carhsp1 "calcium regulated heat stable protein 1"
            species:10116 "Rattus norvegicus" [GO:0000177 "cytoplasmic exosome
            (RNase complex)" evidence=ISO;ISS] [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=ISO;ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0019722 "calcium-mediated
            signaling" evidence=NAS] [GO:0043186 "P granule" evidence=ISO;ISS]
            [GO:0043488 "regulation of mRNA stability" evidence=ISO;ISS]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 RGD:708415 GO:GO:0005829 GO:GO:0006355
            GO:GO:0003677 GO:GO:0019722 GO:GO:0003730 GO:GO:0000932
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488
            CTD:23589 eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
            OMA:PDIFVHI OrthoDB:EOG4V4390 GO:GO:0043186 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 EMBL:AF115346 EMBL:BC071173
            IPI:IPI00201548 RefSeq:NP_690003.1 UniGene:Rn.14584
            ProteinModelPortal:Q9WU49 STRING:Q9WU49 PhosphoSite:Q9WU49
            PRIDE:Q9WU49 Ensembl:ENSRNOT00000003514 GeneID:260416
            KEGG:rno:260416 UCSC:RGD:708415 InParanoid:Q9WU49 NextBio:624378
            Genevestigator:Q9WU49 GermOnline:ENSRNOG00000002610 Uniprot:Q9WU49
        Length = 147

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQTSIGLLDTP--RARDRSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>UNIPROTKB|H3BNU9 [details] [associations]
            symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BNU9
            Ensembl:ENST00000565287 Bgee:H3BNU9 Uniprot:H3BNU9
        Length = 131

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQASVGLLDTP--RSRERSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>UNIPROTKB|H3BPY5 [details] [associations]
            symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BPY5
            Ensembl:ENST00000567908 Bgee:H3BPY5 Uniprot:H3BPY5
        Length = 126

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQASVGLLDTP--RSRERSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>UNIPROTKB|H3BSW7 [details] [associations]
            symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BSW7
            Ensembl:ENST00000568117 Bgee:H3BSW7 Uniprot:H3BSW7
        Length = 112

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQASVGLLDTP--RSRERSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>UNIPROTKB|H3BUY4 [details] [associations]
            symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BUY4
            Ensembl:ENST00000570125 Bgee:H3BUY4 Uniprot:H3BUY4
        Length = 124

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQASVGLLDTP--RSRERSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>UNIPROTKB|Q9Y2V2 [details] [associations]
            symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0019902 "phosphatase binding" evidence=NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0005829 "cytosol"
            evidence=ISS] [GO:0043186 "P granule" evidence=ISS] [GO:0000177
            "cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0035556
            "intracellular signal transduction" evidence=TAS]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0005829 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 EMBL:CH471112 GO:GO:0003730 GO:GO:0000932
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488
            GO:GO:0019902 EMBL:AF115345 EMBL:AK311777 EMBL:BC003366
            EMBL:BC108283 IPI:IPI00304409 RefSeq:NP_001035941.1
            RefSeq:NP_055131.2 UniGene:Hs.632184 PDB:3AQQ PDBsum:3AQQ
            ProteinModelPortal:Q9Y2V2 SMR:Q9Y2V2 IntAct:Q9Y2V2
            MINT:MINT-1432836 STRING:Q9Y2V2 PhosphoSite:Q9Y2V2 DMDM:41016932
            PaxDb:Q9Y2V2 PeptideAtlas:Q9Y2V2 PRIDE:Q9Y2V2 DNASU:23589
            Ensembl:ENST00000311052 Ensembl:ENST00000396593
            Ensembl:ENST00000561530 Ensembl:ENST00000567554 GeneID:23589
            KEGG:hsa:23589 UCSC:uc002czh.1 CTD:23589 GeneCards:GC16M008946
            HGNC:HGNC:17150 HPA:HPA051911 neXtProt:NX_Q9Y2V2 PharmGKB:PA38440
            eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
            InParanoid:Q9Y2V2 OMA:PDIFVHI OrthoDB:EOG4V4390 PhylomeDB:Q9Y2V2
            GenomeRNAi:23589 NextBio:46226 Bgee:Q9Y2V2 CleanEx:HS_CARHSP1
            Genevestigator:Q9Y2V2 GermOnline:ENSG00000153048 GO:GO:0043186
            InterPro:IPR019844 Uniprot:Q9Y2V2
        Length = 147

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/96 (38%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQASVGLLDTP--RSRERSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 94


>UNIPROTKB|E2R913 [details] [associations]
            symbol:CARHSP1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
            SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:PDIFVHI
            InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:AAEX03004556
            Ensembl:ENSCAFT00000030174 Uniprot:E2R913
        Length = 154

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/97 (38%), Positives = 47/97 (48%)

Query:    14 ALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRA 73
             A+SS    P +P  H  +   L +     R R+ S            ++    F  + RA
Sbjct:     7 AMSSEPPPPPQPPTHQTSVGLLDTQ--QSRDRSPSPLRGNVVPSPLPTRRTRTFSATVRA 64

Query:    74 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
              Q PV  G  K FCRSKGHGFITP  G P +F+HISD
Sbjct:    65 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISD 101


>UNIPROTKB|I3L3X8 [details] [associations]
            symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
            GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HGNC:HGNC:17150 EMBL:AC022167 ProteinModelPortal:I3L3X8 SMR:I3L3X8
            PRIDE:I3L3X8 Ensembl:ENST00000562843 Bgee:I3L3X8 Uniprot:I3L3X8
        Length = 94

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 36/96 (37%), Positives = 47/96 (48%)

Query:    15 LSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRAL 74
             +SS    P +P  H  +   L +P    R R+ S            ++    F  + RA 
Sbjct:     1 MSSEPPPPPQPPTHQASVGLLDTP--RSRERSPSPLRGNVVPSPLPTRRTRTFSATVRAS 58

Query:    75 QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             Q PV  G  K FCRSKGHGFITP  G P +F+HIS+
Sbjct:    59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISE 94


>UNIPROTKB|E2RRI6 [details] [associations]
            symbol:CSDC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
            SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000000022
            OMA:CHVSDIE EMBL:AAEX03007296 Ensembl:ENSCAFT00000001614
            Uniprot:E2RRI6
        Length = 159

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 37/105 (35%), Positives = 54/105 (51%)

Query:    12 KPALSS-PMLSPQEPHLHSNNTLSLPS-PIITRRTRT-ESMDFKATAQRSK-GSKEQPNF 67
             +PA++S P   P  P LHS  +   P+ P     +R  E     +    S   +K    +
Sbjct:     3 EPAMTSEPTSPPTVPPLHSPKSPVWPTFPFHREGSRVWERGGVSSRDLPSPLPTKRTRTY 62

Query:    68 LISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDYV 112
               + RA   PV  G  K+F RS+GHGFITP++G   +FVH+SD +
Sbjct:    63 SATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDNI 107


>UNIPROTKB|Q9Y534 [details] [associations]
            symbol:CSDC2 "Cold shock domain-containing protein C2"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=NAS] [GO:0005737
            "cytoplasm" evidence=NAS] [GO:0006398 "histone mRNA 3'-end
            processing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0003677 GO:GO:0003723 EMBL:AL023553 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000059524
            HOVERGEN:HBG050947 InterPro:IPR019844 GO:GO:0006398 EMBL:AB027011
            EMBL:CR456457 EMBL:AL834417 EMBL:BC067113 IPI:IPI00171508
            RefSeq:NP_055275.1 UniGene:Hs.310893 ProteinModelPortal:Q9Y534
            SMR:Q9Y534 IntAct:Q9Y534 MINT:MINT-6946101 STRING:Q9Y534
            PhosphoSite:Q9Y534 DMDM:32129852 PaxDb:Q9Y534 PRIDE:Q9Y534
            DNASU:27254 Ensembl:ENST00000306149 GeneID:27254 KEGG:hsa:27254
            UCSC:uc003bak.1 CTD:27254 GeneCards:GC22P041956 HGNC:HGNC:30359
            HPA:HPA003073 neXtProt:NX_Q9Y534 PharmGKB:PA142672071
            eggNOG:NOG240305 InParanoid:Q9Y534 OMA:CHVSDIE OrthoDB:EOG4WM4W3
            PhylomeDB:Q9Y534 GenomeRNAi:27254 NextBio:50194 Bgee:Q9Y534
            CleanEx:HS_CSDC2 Genevestigator:Q9Y534 GermOnline:ENSG00000172346
            Uniprot:Q9Y534
        Length = 153

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 34/76 (44%), Positives = 44/76 (57%)

Query:    35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
             LPSP+ T+RTRT    + ATA+ S G                PV  G  K+F RS+GHGF
Sbjct:    45 LPSPLPTKRTRT----YSATARASAG----------------PVFKGVCKQFSRSQGHGF 84

Query:    95 ITPDSGEPAVFVHISD 110
             ITP++G   +FVH+SD
Sbjct:    85 ITPENGSEDIFVHVSD 100


>MGI|MGI:2146027 [details] [associations]
            symbol:Csdc2 "cold shock domain containing C2, RNA binding"
            species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
            SMART:SM00357 Prosite:PS00352 MGI:MGI:2146027 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
            GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
            OrthoDB:EOG4WM4W3 EMBL:AK028916 EMBL:AK132493 EMBL:AC102103
            EMBL:BC016109 IPI:IPI00130363 IPI:IPI00954670 RefSeq:NP_663448.2
            UniGene:Mm.22524 ProteinModelPortal:Q91YQ3 STRING:Q91YQ3
            PhosphoSite:Q91YQ3 PaxDb:Q91YQ3 PRIDE:Q91YQ3
            Ensembl:ENSMUST00000038757 GeneID:105859 KEGG:mmu:105859
            InParanoid:Q91YQ3 NextBio:357940 CleanEx:MM_CSDC2
            Genevestigator:Q91YQ3 GermOnline:ENSMUSG00000042109 Uniprot:Q91YQ3
        Length = 154

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 34/76 (44%), Positives = 44/76 (57%)

Query:    35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
             LPSP+ T+RTRT    + ATA+ S G                PV  G  K+F RS+GHGF
Sbjct:    46 LPSPLPTKRTRT----YSATARASAG----------------PVFKGVCKQFSRSQGHGF 85

Query:    95 ITPDSGEPAVFVHISD 110
             ITP++G   +FVH+SD
Sbjct:    86 ITPENGSEDIFVHVSD 101


>RGD|628780 [details] [associations]
            symbol:Csdc2 "cold shock domain containing C2, RNA binding"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 RGD:628780 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
            OrthoDB:EOG4WM4W3 EMBL:X89962 IPI:IPI00209017 PIR:JC4588
            RefSeq:NP_001164013.1 UniGene:Rn.1171 ProteinModelPortal:Q63430
            STRING:Q63430 Ensembl:ENSRNOT00000007091 GeneID:266600
            KEGG:rno:266600 UCSC:RGD:628780 InParanoid:Q63430 NextBio:624402
            Genevestigator:Q63430 GermOnline:ENSRNOG00000005332 Uniprot:Q63430
        Length = 154

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 34/76 (44%), Positives = 44/76 (57%)

Query:    35 LPSPIITRRTRTESMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGF 94
             LPSP+ T+RTRT    + ATA+ S G                PV  G  K+F RS+GHGF
Sbjct:    46 LPSPLPTKRTRT----YSATARASAG----------------PVFKGVCKQFSRSQGHGF 85

Query:    95 ITPDSGEPAVFVHISD 110
             ITP++G   +FVH+SD
Sbjct:    86 ITPENGSEDIFVHVSD 101


>ZFIN|ZDB-GENE-040426-1479 [details] [associations]
            symbol:carhsp1 "calcium regulated heat stable
            protein 1" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
            SMART:SM00357 Prosite:PS00352 ZFIN:ZDB-GENE-040426-1479
            GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 CTD:23589 eggNOG:NOG239041 HOGENOM:HOG000059524
            HOVERGEN:HBG050947 OMA:PDIFVHI OrthoDB:EOG4V4390 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 EMBL:CU464204 EMBL:BX936335
            EMBL:BC056576 IPI:IPI00490441 RefSeq:NP_956856.1 UniGene:Dr.78003
            Ensembl:ENSDART00000075100 Ensembl:ENSDART00000151437 GeneID:393534
            KEGG:dre:393534 InParanoid:Q6PHF1 NextBio:20814555 Uniprot:Q6PHF1
        Length = 155

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 39/103 (37%), Positives = 49/103 (47%)

Query:     9 ENKKPALSS-PMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKGSKEQPNF 67
             E   P  S+ P LSP  P   S + L LP+     R R+ S            ++     
Sbjct:     4 EASSPVKSTTPPLSPSSPV--SPSALHLPT--CRNRARSPSPMRSHLIPSPLPTRRNRTC 59

Query:    68 LISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
               + RA + PV +G  K F RSKGHGFITP  G   +FVHISD
Sbjct:    60 SAAARAAEGPVFSGVCKCFSRSKGHGFITPSDGGNDIFVHISD 102


>UNIPROTKB|F1NMV8 [details] [associations]
            symbol:CSDC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 OMA:CHVSDIE EMBL:AADN02006068
            IPI:IPI00575708 Ensembl:ENSGALT00000000064 Uniprot:F1NMV8
        Length = 162

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 36/102 (35%), Positives = 51/102 (50%)

Query:    13 PALSS-PMLSPQEPHLHSNNTLSLPS-PIITRRTRT-ESMDFKATAQRSK-GSKEQPNFL 68
             P +SS P   P  P LHS  +   P+ P     +R  E  +       S   +K    + 
Sbjct:     8 PTMSSEPGAPPAVPPLHSPKSPVWPTFPFQREGSRVWERGNLLLRDLPSPLPTKRTRTYS 67

Query:    69 ISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
              + RA   P+  G  K+F RS+GHGFITP++G   +FVH+SD
Sbjct:    68 ATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHVSD 109


>UNIPROTKB|Q08E16 [details] [associations]
            symbol:CSDC2 "Cold shock domain containing C2, RNA binding"
            species:9913 "Bos taurus" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
            SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
            OrthoDB:EOG4WM4W3 EMBL:DAAA02014733 EMBL:BC123465 IPI:IPI00708950
            RefSeq:NP_001070345.1 UniGene:Bt.64706 Ensembl:ENSBTAT00000005226
            GeneID:525364 KEGG:bta:525364 InParanoid:Q08E16 NextBio:20874148
            Uniprot:Q08E16
        Length = 153

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/110 (31%), Positives = 51/110 (46%)

Query:     1 MSGSPLPFENKKPALSSPMLSPQEPHLHSNNTLSLPSPIITRRTRTESMDFKATAQRSKG 60
             M+  P P     PA+  P+ SP+ P +            +  R    S D  +       
Sbjct:     1 MTSEPTP-----PAVVPPLHSPKSP-VWPTFPFHREGSRVWERGSVSSRDLPSPLP---- 50

Query:    61 SKEQPNFLISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             +K    +  + RA   PV  G  K+F RS+GHGFITP++G   +FVH+SD
Sbjct:    51 TKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHVSD 100


>UNIPROTKB|F1SRD7 [details] [associations]
            symbol:CSDC2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
            GeneTree:ENSGT00390000000022 CTD:27254 OMA:CHVSDIE EMBL:CU633382
            RefSeq:NP_001230349.1 UniGene:Ssc.3207 Ensembl:ENSSSCT00000000068
            GeneID:100153407 KEGG:ssc:100153407 Uniprot:F1SRD7
        Length = 153

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 35/98 (35%), Positives = 48/98 (48%)

Query:    16 SSPMLSPQEPHLHSNNTLSLPS-PIITRRTRT-ESMDFKATAQRSK-GSKEQPNFLISNR 72
             S P   P  P LHS  +   P+ P     +R  E     +    S   +K    +  + R
Sbjct:     3 SEPTPPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVSSRDLPSPLPTKRTRTYSATAR 62

Query:    73 ALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             A   PV  G  K+F RS+GHGFITP++G   +FVH+SD
Sbjct:    63 ASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSD 100


>UNIPROTKB|H7C4E7 [details] [associations]
            symbol:CSDC2 "Cold shock domain-containing protein C2"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
            GO:GO:0003677 EMBL:AL023553 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 HGNC:HGNC:30359 EMBL:Z83840 Ensembl:ENST00000460790
            Bgee:H7C4E7 Uniprot:H7C4E7
        Length = 151

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query:    61 SKEQPNFLISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             +K    +  + RA   PV  G  K+F RS+GHGFITP++G   +FVH+S+
Sbjct:    34 TKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSE 83


>ZFIN|ZDB-GENE-040718-442 [details] [associations]
            symbol:csdc2a "cold shock domain containing C2, RNA
            binding a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
            Prosite:PS00352 ZFIN:ZDB-GENE-040718-442 GO:GO:0006355
            GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
            eggNOG:NOG240305 OrthoDB:EOG4WM4W3 EMBL:BC076447 IPI:IPI00486145
            RefSeq:NP_001002690.1 UniGene:Dr.87298 ProteinModelPortal:Q6DGA4
            GeneID:436963 KEGG:dre:436963 CTD:436963 InParanoid:Q6DGA4
            NextBio:20831386 Uniprot:Q6DGA4
        Length = 153

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 34/97 (35%), Positives = 43/97 (44%)

Query:    17 SPMLSPQEPHLHSNNT-LSLPSPIITRRTRTESMDFKATAQRSKG--SKEQPNFLISNRA 73
             S   S  +  LH  +T LSL  P +   +         T +      +K    +  S RA
Sbjct:     4 SESTSTSDGKLHCPHTPLSLSLPFLREGSGLLERKPPQTGEPLSPLPTKRTRTYSASVRA 63

Query:    74 LQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
                PV  G  K F RS+GHGFI P  G   +FVHISD
Sbjct:    64 KSGPVYKGICKNFSRSQGHGFIRPSHGGEDIFVHISD 100


>ZFIN|ZDB-GENE-110419-1 [details] [associations]
            symbol:csdc2b "cold shock domain containing C2, RNA
            binding b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
            SMART:SM00357 Prosite:PS00352 ZFIN:ZDB-GENE-110419-1 GO:GO:0006355
            GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:CABZ01117704
            EMBL:CABZ01117705 EMBL:CABZ01117706 IPI:IPI00863650
            Ensembl:ENSDART00000099055 Bgee:F1QHR6 Uniprot:F1QHR6
        Length = 162

 Score = 102 (41.0 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query:    61 SKEQPNFLISNRALQNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
             +K    +  + RA   PV  G  K+F RS+GHGFI P  G   +F HISD
Sbjct:    60 TKRTRTYSATVRANAGPVFKGVCKDFSRSQGHGFIKPAHGGDDIFFHISD 109


>TIGR_CMR|SPO_1275 [details] [associations]
            symbol:SPO_1275 "cold shock family protein" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
            InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
            PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
            GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR019844 KO:K03704 OMA:KMRGKVS HOGENOM:HOG000070673
            RefSeq:YP_166520.1 ProteinModelPortal:Q5LTY5 SMR:Q5LTY5
            GeneID:3194159 KEGG:sil:SPO1275 PATRIC:23375855
            ProtClustDB:CLSK759123 Uniprot:Q5LTY5
        Length = 68

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query:    80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
             TG +K F  +KG+GFI PD G   VFVHIS
Sbjct:     3 TGTVKWFNATKGYGFIAPDDGGKDVFVHIS 32


>UNIPROTKB|P0A9X9 [details] [associations]
            symbol:cspA species:83333 "Escherichia coli K-12"
            [GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
            to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0060567 "negative regulation of
            DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0031564 "transcription antitermination"
            evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
            Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
            GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
            eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
            EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
            PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
            ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
            MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
            EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
            EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
            KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
            EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
            BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
            EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
            GO:GO:0060567 Uniprot:P0A9X9
        Length = 70

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 18/30 (60%), Positives = 19/30 (63%)

Query:    80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
             TG +K F   KG GFITPD G   VFVH S
Sbjct:     6 TGIVKWFNADKGFGFITPDDGSKDVFVHFS 35


>UNIPROTKB|P0A972 [details] [associations]
            symbol:cspE species:83333 "Escherichia coli K-12"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
            binding transcription antitermination factor activity"
            evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
            transcription, termination" evidence=IDA] [GO:0031564
            "transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
            RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
            Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
            GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
            eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
            GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
            RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
            DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
            PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
            EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
            KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
            EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
            BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
            GO:GO:0008143 Uniprot:P0A972
        Length = 69

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query:    81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
             G +K F  SKG GFITP+ G   VFVH S
Sbjct:     6 GNVKWFNESKGFGFITPEDGSKDVFVHFS 34


>UNIPROTKB|P0A978 [details] [associations]
            symbol:cspG species:83333 "Escherichia coli K-12"
            [GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
            to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
            InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
            SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
            OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
            RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
            DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
            EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
            GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
            PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
            ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
            BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
            Uniprot:P0A978
        Length = 70

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query:    80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
             TG +K F   KG GFITPD G   VFVH +
Sbjct:     6 TGLVKWFNADKGFGFITPDDGSKDVFVHFT 35


>UNIPROTKB|P0A9Y6 [details] [associations]
            symbol:cspC species:83333 "Escherichia coli K-12"
            [GO:0001072 "RNA binding transcription antitermination factor
            activity" evidence=IDA] [GO:0060567 "negative regulation of
            DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0031564 "transcription antitermination"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
            Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
            Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
            eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
            GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
            RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
            DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
            PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
            EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
            KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
            EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
            BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
            Genevestigator:P0A9Y6 Uniprot:P0A9Y6
        Length = 69

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query:    81 GKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
             G++K F  SKG GFITP  G   VFVH S
Sbjct:     6 GQVKWFNESKGFGFITPADGSKDVFVHFS 34


>TIGR_CMR|SPO_0437 [details] [associations]
            symbol:SPO_0437 "cold shock family protein" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
            InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
            PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
            GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR019844 KO:K03704 HOGENOM:HOG000070673
            RefSeq:YP_165700.1 ProteinModelPortal:Q5LWA5 SMR:Q5LWA5
            GeneID:3192720 KEGG:sil:SPO0437 PATRIC:23374139 OMA:VEFAIHR
            ProtClustDB:CLSK747481 Uniprot:Q5LWA5
        Length = 68

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query:    80 TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
             TG +K F  +KG GFI P+ G   VFVHIS
Sbjct:     3 TGTVKWFNTTKGFGFIAPEEGGKDVFVHIS 32


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       144   0.00091  102 3  11 23  0.37    32
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  30
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  126 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.79u 0.10s 15.89t   Elapsed:  00:00:01
  Total cpu time:  15.79u 0.10s 15.89t   Elapsed:  00:00:01
  Start:  Thu Aug 15 12:51:39 2013   End:  Thu Aug 15 12:51:40 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with CG9705 CG9705 CG9705	protein from Drosophila melanogaster	5.5e-18
BLAST match view associations BLAST with LOC100521547 LOC100521547 LOC100521547 Uncharacterized protein	protein from Sus scrofa	2.0e-10
BLAST match view associations BLAST with Carhsp1 Carhsp1 Carhsp1 calcium regulated heat stable protein 1	protein from Mus musculus	2.0e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Uncharacterized protein	protein from Bos taurus	5.2e-10
BLAST match view associations BLAST with Carhsp1 Carhsp1 Carhsp1 calcium regulated heat stable protein 1	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	6.6e-10
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-09
BLAST match view associations BLAST with CARHSP1 CARHSP1 CARHSP1 Calcium-regulated heat stable protein 1	protein from Homo sapiens	1.8e-09
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Uncharacterized protein	protein from Canis lupus familiaris	3.6e-09
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Cold shock domain-containing protein C2	protein from Homo sapiens	5.9e-09
BLAST match view associations BLAST with Csdc2 Csdc2 Csdc2 cold shock domain containing C2, RNA binding	protein from Mus musculus	5.9e-09
BLAST match view associations BLAST with Csdc2 Csdc2 Csdc2 cold shock domain containing C2, RNA binding	gene from Rattus norvegicus	5.9e-09
BLAST match view associations BLAST with carhsp1 carhsp1 carhsp1 calcium regulated heat stable protein 1	gene_product from Danio rerio	9.7e-09
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Uncharacterized protein	protein from Gallus gallus	1.6e-08
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Cold shock domain containing C2, RNA binding	protein from Bos taurus	2.0e-08
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Uncharacterized protein	protein from Sus scrofa	3.3e-08
BLAST match view associations BLAST with CSDC2 CSDC2 CSDC2 Cold shock domain-containing protein C2	protein from Homo sapiens	2.3e-07
BLAST match view associations BLAST with csdc2a csdc2a csdc2a cold shock domain containing C2, RNA binding a	gene_product from Danio rerio	7.8e-07
BLAST match view associations BLAST with csdc2b csdc2b csdc2b cold shock domain containing C2, RNA binding b	gene_product from Danio rerio	4.0e-05
BLAST match view associations BLAST with SPO_1275 SPO_1275 SPO_1275 cold shock family protein	protein from Ruegeria pomeroyi DSS-3	0.00017
BLAST match view associations BLAST with cspA cspA cspA	protein from Escherichia coli K-12	0.00035
BLAST match view associations BLAST with cspE cspE cspE	protein from Escherichia coli K-12	0.00045
BLAST match view associations BLAST with cspG cspG cspG	protein from Escherichia coli K-12	0.00057
BLAST match view associations BLAST with cspC cspC cspC	protein from Escherichia coli K-12	0.00093
BLAST match view associations BLAST with SPO_0437 SPO_0437 SPO_0437 cold shock family protein	protein from Ruegeria pomeroyi DSS-3	0.00093