RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3660
         (144 letters)



>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli
           [TaxId: 562]}
          Length = 69

 Score = 49.0 bits (117), Expect = 1e-09
 Identities = 18/30 (60%), Positives = 19/30 (63%)

Query: 80  TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
           TG +K F   KG GFITPD G   VFVH S
Sbjct: 5   TGIVKWFNADKGFGFITPDDGSKDVFVHFS 34


>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 79

 Score = 49.0 bits (117), Expect = 2e-09
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 80  TGKIKEFCRSKGHGFITPDSGEPAVFVHIS 109
            G +K F    G+GFI  +  +  VFVH +
Sbjct: 10  LGTVKWFNVRNGYGFINRNDTKEDVFVHQT 39


>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima
           [TaxId: 2336]}
          Length = 66

 Score = 44.7 bits (106), Expect = 6e-08
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 80  TGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
            GK+K F   KG+GFIT D G   VFVH S 
Sbjct: 2   RGKVKWFDSKKGYGFITKDEGGD-VFVHWSA 31


>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
           caldolyticus [TaxId: 1394]}
          Length = 66

 Score = 41.7 bits (98), Expect = 8e-07
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 79  ETGKIKEFCRSKGHGFITPDSGEPAVFVHISD 110
           + GK+K F   KG+GFI  + G   VFVH + 
Sbjct: 2   QRGKVKWFNNEKGYGFIEVEGGSD-VFVHFTA 32


>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 79  ETGKIKEFCRSKGHGFITPDSGEPAVFVHISDYVIMP 115
           ETG I++      +GFI     +  +F H S Y    
Sbjct: 19  ETGVIEKL--LTSYGFIQCSERQARLFFHCSQYNGNL 53


>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 88

 Score = 27.0 bits (60), Expect = 0.38
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 80  TGKIKEFCR-SKGHGFITPDSGEPAVFVHISDYVIMPK 116
                E C   +G   +T + G+  V     D V  PK
Sbjct: 33  YYDTNETCYILEGKVEVTTEDGKKYVIEK-GDLVTFPK 69


>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 26.6 bits (59), Expect = 0.45
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 13/55 (23%)

Query: 75  QNPVETGKIKEFCRSKGHGFITPDSGEPAVFVHISDYVIMPKLISQINKALQGSK 129
           Q P   G +K     KG GF+  D+ +         Y I P    Q+ K + G +
Sbjct: 15  QTPRAEGVVK--ATEKGFGFLEVDAQK--------SYFIPPP---QMKKVMHGDR 56


>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 129

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 48 SMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGFITPD 98
          + + +AT + + GS +     I++R   N   T   +  C       ++ D
Sbjct: 37 NFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSD 87


>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus
          mykiss) [TaxId: 8022]}
          Length = 129

 Score = 24.9 bits (54), Expect = 3.0
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 48 SMDFKATAQRSKGSKEQPNFLISNRALQNPVETGKIKEFCRSKGHGFITPD 98
          S + +AT + + GS +   F I++R   +   T   K  C  +    +T D
Sbjct: 37 SYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRCSQLLTDD 87


>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase
           B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 156

 Score = 24.9 bits (54), Expect = 3.3
 Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 3/54 (5%)

Query: 82  KIKEFCRSKGHGFI---TPDSGEPAVFVHISDYVIMPKLISQINKALQGSKTCN 132
           +I E  +  GH  I            +           +    +  +    + N
Sbjct: 18  RIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGN 71


>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
           domain {Bacillus subtilis [TaxId: 1423]}
          Length = 202

 Score = 25.0 bits (54), Expect = 3.8
 Identities = 10/44 (22%), Positives = 24/44 (54%)

Query: 82  KIKEFCRSKGHGFITPDSGEPAVFVHISDYVIMPKLISQINKAL 125
           + +EF ++ G     P+   P  +V+++D +  P ++S++ K  
Sbjct: 5   EAEEFVQTLGQSLANPERILPGGYVYLTDILGKPSVLSKVGKLF 48


>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus
           norvegicus [TaxId: 10116]}
          Length = 186

 Score = 23.8 bits (51), Expect = 7.9
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 75  QNPVETGKIKEFCRSKG-HGFITPDSGEPAVFVHI 108
           +  +   +      S G H        EPAV +H+
Sbjct: 118 ERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHL 152


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 486,248
Number of extensions: 19815
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 12
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.1 bits)