Query psy3661
Match_columns 109
No_of_seqs 156 out of 1175
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:25:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2451|consensus 100.0 3.5E-29 7.6E-34 185.5 9.2 102 2-106 117-218 (503)
2 KOG2450|consensus 100.0 2.8E-29 6.1E-34 190.7 7.6 99 3-105 117-216 (501)
3 COG1012 PutA NAD-dependent ald 99.9 5.7E-27 1.2E-31 180.3 11.5 101 2-106 92-192 (472)
4 cd07126 ALDH_F12_P5CDH Delta(1 99.9 3.3E-26 7.2E-31 176.7 12.2 102 2-106 98-201 (489)
5 PLN02419 methylmalonate-semial 99.9 3.4E-26 7.3E-31 179.9 11.5 102 2-106 207-308 (604)
6 PRK11241 gabD succinate-semial 99.9 9.6E-26 2.1E-30 173.9 12.3 101 2-105 104-204 (482)
7 PRK10090 aldehyde dehydrogenas 99.9 1.3E-25 2.8E-30 170.2 12.4 102 2-106 29-130 (409)
8 PRK13968 putative succinate se 99.9 8.4E-25 1.8E-29 167.8 12.3 101 2-106 85-185 (462)
9 PLN02315 aldehyde dehydrogenas 99.9 8.2E-25 1.8E-29 169.6 11.9 102 2-106 112-217 (508)
10 PRK09406 gabD1 succinic semial 99.9 1.1E-24 2.4E-29 166.9 12.2 102 2-106 79-182 (457)
11 PLN02467 betaine aldehyde dehy 99.9 1.1E-24 2.5E-29 168.7 12.0 102 2-106 106-210 (503)
12 PLN02278 succinic semialdehyde 99.9 1.8E-24 3.9E-29 167.3 12.2 102 2-106 118-219 (498)
13 TIGR01780 SSADH succinate-semi 99.9 2.1E-24 4.6E-29 164.9 12.3 103 2-107 75-177 (448)
14 TIGR01237 D1pyr5carbox2 delta- 99.9 2E-24 4.3E-29 167.5 12.2 102 2-106 125-226 (511)
15 cd07097 ALDH_KGSADH-YcbD Bacil 99.9 2.7E-24 5.9E-29 165.3 12.4 102 2-106 93-194 (473)
16 cd07128 ALDH_MaoC-N N-terminal 99.9 2.4E-24 5.3E-29 167.1 11.8 101 2-105 92-203 (513)
17 cd07118 ALDH_SNDH Gluconobacte 99.9 3.4E-24 7.3E-29 164.1 12.1 102 2-106 77-178 (454)
18 PLN02766 coniferyl-aldehyde de 99.9 2.9E-24 6.2E-29 166.3 11.8 98 5-106 120-217 (501)
19 cd07140 ALDH_F1L_FTFDH 10-form 99.9 3.3E-24 7.2E-29 165.5 11.9 99 5-106 105-206 (486)
20 cd07083 ALDH_P5CDH ALDH subfam 99.9 4.7E-24 1E-28 165.0 12.4 103 2-107 111-214 (500)
21 PRK03137 1-pyrroline-5-carboxy 99.9 4.7E-24 1E-28 165.5 12.0 102 2-106 129-230 (514)
22 cd07124 ALDH_PutA-P5CDH-RocA D 99.9 5.1E-24 1.1E-28 165.2 12.1 102 2-107 125-226 (512)
23 cd07148 ALDH_RL0313 Uncharacte 99.9 5.6E-24 1.2E-28 162.9 12.2 102 2-106 78-183 (455)
24 cd07113 ALDH_PADH_NahF Escheri 99.9 5.4E-24 1.2E-28 163.8 12.1 102 2-106 94-201 (477)
25 cd07120 ALDH_PsfA-ACA09737 Pse 99.9 6.1E-24 1.3E-28 162.8 12.2 101 2-106 76-177 (455)
26 cd07100 ALDH_SSADH1_GabD1 Myco 99.9 6.5E-24 1.4E-28 161.5 12.2 100 2-106 55-155 (429)
27 cd07142 ALDH_F2BC Arabidosis a 99.9 5.4E-24 1.2E-28 163.8 11.9 98 5-106 103-200 (476)
28 PLN02466 aldehyde dehydrogenas 99.9 5.5E-24 1.2E-28 165.9 11.9 98 5-106 157-254 (538)
29 cd07119 ALDH_BADH-GbsA Bacillu 99.9 6.2E-24 1.3E-28 163.5 12.0 101 2-106 93-193 (482)
30 cd07109 ALDH_AAS00426 Uncharac 99.9 7.3E-24 1.6E-28 162.0 12.3 102 2-107 76-177 (454)
31 cd07095 ALDH_SGSD_AstD N-succi 99.9 5.7E-24 1.2E-28 162.0 11.6 102 2-107 56-157 (431)
32 cd07086 ALDH_F7_AASADH-like NA 99.9 7.5E-24 1.6E-28 163.0 12.3 103 2-107 91-197 (478)
33 cd07151 ALDH_HBenzADH NADP+-de 99.9 7.5E-24 1.6E-28 162.5 12.1 103 2-107 88-191 (465)
34 TIGR02278 PaaN-DH phenylacetic 99.9 6.3E-24 1.4E-28 168.9 11.9 101 2-105 92-203 (663)
35 cd07085 ALDH_F6_MMSDH Methylma 99.9 7.7E-24 1.7E-28 162.9 12.1 102 2-106 94-195 (478)
36 cd07105 ALDH_SaliADH Salicylal 99.9 9.5E-24 2.1E-28 160.7 12.1 101 3-106 57-157 (432)
37 PLN02174 aldehyde dehydrogenas 99.9 9E-24 2E-28 163.0 11.9 100 2-105 66-169 (484)
38 cd07110 ALDH_F10_BADH Arabidop 99.9 1.1E-23 2.3E-28 161.3 12.1 102 2-106 75-179 (456)
39 cd07090 ALDH_F9_TMBADH NAD+-de 99.9 1E-23 2.2E-28 161.4 11.7 102 2-107 75-176 (457)
40 PRK09457 astD succinylglutamic 99.9 1.1E-23 2.3E-28 162.6 11.9 101 2-106 93-193 (487)
41 TIGR03250 PhnAcAld_DH putative 99.9 1.2E-23 2.7E-28 161.8 12.1 102 2-106 92-198 (472)
42 cd07150 ALDH_VaniDH_like Pseud 99.9 1.3E-23 2.9E-28 160.4 12.2 102 2-106 77-178 (451)
43 PRK13252 betaine aldehyde dehy 99.9 1.3E-23 2.8E-28 162.1 12.0 101 2-106 100-201 (488)
44 cd07145 ALDH_LactADH_F420-Bios 99.9 1.5E-23 3.3E-28 160.4 12.2 102 2-106 77-182 (456)
45 cd07143 ALDH_AldA_AN0554 Asper 99.9 1.4E-23 2.9E-28 161.9 11.8 99 4-106 105-203 (481)
46 TIGR03374 ABALDH 1-pyrroline d 99.9 1.6E-23 3.6E-28 161.1 11.7 98 5-106 98-195 (472)
47 TIGR01722 MMSDH methylmalonic 99.9 1.9E-23 4E-28 160.8 11.8 102 2-106 94-195 (477)
48 TIGR01804 BADH glycine betaine 99.9 2E-23 4.4E-28 160.1 11.9 99 4-106 94-192 (467)
49 cd07088 ALDH_LactADH-AldA Esch 99.9 2.4E-23 5.1E-28 159.7 12.2 102 2-106 91-192 (468)
50 TIGR02299 HpaE 5-carboxymethyl 99.9 1.5E-23 3.3E-28 161.6 11.1 101 2-107 94-195 (488)
51 PRK11563 bifunctional aldehyde 99.9 2E-23 4.3E-28 166.4 11.9 101 2-105 96-207 (675)
52 cd07146 ALDH_PhpJ Streptomyces 99.9 2.3E-23 5.1E-28 159.4 11.8 102 2-106 74-179 (451)
53 cd07131 ALDH_AldH-CAJ73105 Unc 99.9 2.7E-23 5.8E-28 159.8 12.1 102 2-106 93-194 (478)
54 PRK09847 gamma-glutamyl-gamma- 99.9 2.5E-23 5.5E-28 160.8 11.9 98 5-106 119-216 (494)
55 cd07141 ALDH_F1AB_F2_RALDH1 NA 99.9 2.8E-23 6E-28 160.0 11.9 99 5-107 107-205 (481)
56 TIGR03216 OH_muco_semi_DH 2-hy 99.9 3.2E-23 6.9E-28 159.7 12.1 100 5-107 97-199 (481)
57 cd07091 ALDH_F1-2_Ald2-like AL 99.9 3.6E-23 7.8E-28 159.1 12.2 98 5-106 103-200 (476)
58 cd07112 ALDH_GABALDH-PuuC Esch 99.9 3.5E-23 7.5E-28 158.8 12.0 98 5-106 86-183 (462)
59 cd07130 ALDH_F7_AASADH NAD+-de 99.9 3.4E-23 7.3E-28 159.3 11.9 102 2-106 90-195 (474)
60 cd07116 ALDH_ACDHII-AcoD Ralst 99.9 3.1E-23 6.8E-28 159.7 11.7 100 2-106 94-194 (479)
61 cd07144 ALDH_ALD2-YMR170C Sacc 99.9 3.6E-23 7.8E-28 159.4 12.0 99 4-106 105-203 (484)
62 cd07117 ALDH_StaphAldA1 Unchar 99.9 3.2E-23 6.9E-28 159.6 11.7 100 2-106 94-194 (475)
63 PRK11904 bifunctional proline 99.9 2.9E-23 6.3E-28 171.0 12.1 102 2-106 641-743 (1038)
64 PRK11903 aldehyde dehydrogenas 99.9 3.5E-23 7.5E-28 161.0 11.8 101 2-105 97-207 (521)
65 cd07089 ALDH_CddD-AldA-like Rh 99.9 4.2E-23 9.2E-28 158.2 12.1 100 5-107 80-183 (459)
66 cd07102 ALDH_EDX86601 Uncharac 99.9 5E-23 1.1E-27 157.3 12.3 102 2-106 74-175 (452)
67 cd07101 ALDH_SSADH2_GabD2 Myco 99.9 5.1E-23 1.1E-27 157.5 12.4 102 2-106 74-177 (454)
68 cd07152 ALDH_BenzADH NAD-depen 99.9 4.3E-23 9.3E-28 157.4 11.8 100 3-106 70-170 (443)
69 TIGR01236 D1pyr5carbox1 delta- 99.9 4E-23 8.6E-28 161.0 11.6 101 2-106 126-228 (533)
70 TIGR03240 arg_catab_astD succi 99.9 4.9E-23 1.1E-27 158.8 11.8 101 2-106 91-191 (484)
71 PRK09407 gabD2 succinic semial 99.9 6E-23 1.3E-27 159.7 12.3 102 2-106 110-213 (524)
72 cd07114 ALDH_DhaS Uncharacteri 99.9 6.6E-23 1.4E-27 156.9 12.3 102 2-106 77-178 (457)
73 cd07139 ALDH_AldA-Rv0768 Mycob 99.9 7E-23 1.5E-27 157.3 12.4 99 5-106 98-196 (471)
74 cd07094 ALDH_F21_LactADH-like 99.9 6.8E-23 1.5E-27 156.6 12.2 102 2-106 77-182 (453)
75 cd07125 ALDH_PutA-P5CDH Delta( 99.9 6.3E-23 1.4E-27 159.4 12.1 102 2-106 125-226 (518)
76 cd07103 ALDH_F5_SSADH_GabD Mit 99.9 7.8E-23 1.7E-27 156.1 12.1 103 2-107 75-177 (451)
77 cd07115 ALDH_HMSADH_HapE Pseud 99.9 7.2E-23 1.6E-27 156.6 11.5 98 5-106 79-176 (453)
78 cd07147 ALDH_F21_RNP123 Aldehy 99.9 9.9E-23 2.2E-27 155.7 12.2 102 2-106 77-182 (452)
79 PF00171 Aldedh: Aldehyde dehy 99.9 3.5E-23 7.6E-28 158.6 9.6 102 2-107 85-186 (462)
80 cd07123 ALDH_F4-17_P5CDH Delta 99.9 9.9E-23 2.1E-27 158.4 11.9 96 6-105 131-227 (522)
81 PRK11809 putA trifunctional tr 99.9 4.9E-23 1.1E-27 171.9 10.5 90 2-106 738-827 (1318)
82 cd07559 ALDH_ACDHII_AcoD-like 99.9 1.1E-22 2.4E-27 156.8 11.4 96 5-105 98-193 (480)
83 cd07099 ALDH_DDALDH Methylomon 99.9 1.6E-22 3.5E-27 154.5 12.2 101 3-106 75-178 (453)
84 cd07107 ALDH_PhdK-like Nocardi 99.9 1.5E-22 3.2E-27 155.0 11.9 99 2-105 75-173 (456)
85 cd07136 ALDH_YwdH-P39616 Bacil 99.9 1.6E-22 3.5E-27 154.9 11.9 101 2-106 54-158 (449)
86 PLN00412 NADP-dependent glycer 99.9 1.8E-22 3.9E-27 156.2 12.1 102 2-106 109-217 (496)
87 PLN02203 aldehyde dehydrogenas 99.9 1.9E-22 4.2E-27 155.7 11.9 101 2-106 62-166 (484)
88 PRK13473 gamma-aminobutyraldeh 99.9 2.1E-22 4.5E-27 154.9 12.0 97 5-105 99-195 (475)
89 cd07104 ALDH_BenzADH-like ALDH 99.9 2.5E-22 5.5E-27 152.4 12.3 101 3-106 57-158 (431)
90 cd07082 ALDH_F11_NP-GAPDH NADP 99.9 2.7E-22 6E-27 154.1 12.2 102 2-106 95-200 (473)
91 cd07137 ALDH_F3FHI Plant aldeh 99.9 2.5E-22 5.5E-27 153.1 11.8 98 5-106 59-159 (432)
92 cd07138 ALDH_CddD_SSP0762 Rhod 99.9 2.5E-22 5.5E-27 154.1 11.6 95 5-107 96-190 (466)
93 cd07149 ALDH_y4uC Uncharacteri 99.9 3.7E-22 8.1E-27 152.3 12.2 103 2-107 77-183 (453)
94 cd07133 ALDH_CALDH_CalB Conife 99.9 3.8E-22 8.3E-27 152.2 11.6 98 5-106 59-159 (434)
95 cd07135 ALDH_F14-YMR110C Sacch 99.9 5.1E-22 1.1E-26 151.6 11.4 101 2-106 61-166 (436)
96 cd07108 ALDH_MGR_2402 Magnetos 99.9 5.8E-22 1.3E-26 151.7 11.7 99 2-105 76-174 (457)
97 cd07092 ALDH_ABALDH-YdcW Esche 99.9 8.5E-22 1.8E-26 150.4 12.1 98 5-106 79-176 (450)
98 PLN02418 delta-1-pyrroline-5-c 99.9 6.9E-22 1.5E-26 158.3 11.1 95 4-105 364-460 (718)
99 TIGR00407 proA gamma-glutamyl 99.9 6.8E-22 1.5E-26 149.5 10.0 99 2-106 60-164 (398)
100 PRK11905 bifunctional proline 99.9 6E-22 1.3E-26 165.0 10.4 90 2-106 646-735 (1208)
101 TIGR02288 PaaN_2 phenylacetic 99.9 8.3E-22 1.8E-26 154.0 10.6 98 6-106 149-256 (551)
102 PTZ00381 aldehyde dehydrogenas 99.9 1.7E-21 3.7E-26 150.7 11.6 98 5-106 67-167 (493)
103 TIGR01238 D1pyr5carbox3 delta- 99.9 1.1E-21 2.4E-26 152.0 10.5 90 2-106 130-219 (500)
104 cd07081 ALDH_F20_ACDH_EutE-lik 99.9 1.6E-21 3.5E-26 149.1 11.1 68 36-106 87-158 (439)
105 COG4230 Delta 1-pyrroline-5-ca 99.9 5.2E-22 1.1E-26 152.9 8.4 90 2-106 206-295 (769)
106 cd07093 ALDH_F8_HMSADH Human a 99.9 3E-21 6.5E-26 147.6 12.0 99 5-107 79-177 (455)
107 cd07122 ALDH_F20_ACDH Coenzyme 99.9 1.8E-21 4E-26 148.6 9.7 94 6-106 60-158 (436)
108 cd07111 ALDH_F16 Aldehyde dehy 99.9 2.6E-21 5.6E-26 149.2 10.4 87 6-106 120-206 (480)
109 cd07106 ALDH_AldA-AAD23400 Str 99.9 4.9E-21 1.1E-25 146.3 11.7 98 2-106 75-172 (446)
110 cd07132 ALDH_F3AB Aldehyde deh 99.9 5.3E-21 1.1E-25 146.3 11.6 98 5-106 58-158 (443)
111 cd07121 ALDH_EutE Ethanolamine 99.9 4.3E-21 9.4E-26 146.3 10.5 68 37-107 90-161 (429)
112 cd07087 ALDH_F3-13-14_CALDH-li 99.9 6.5E-21 1.4E-25 145.0 11.4 98 5-106 58-158 (426)
113 cd07129 ALDH_KGSADH Alpha-Keto 99.9 4.6E-21 9.9E-26 146.9 10.5 103 2-107 55-171 (454)
114 cd07134 ALDH_AlkH-like Pseudom 99.8 1.2E-20 2.7E-25 143.9 11.7 97 5-105 58-157 (433)
115 cd07077 ALDH-like NAD(P)+-depe 99.8 7.9E-21 1.7E-25 143.4 10.4 95 5-106 64-161 (397)
116 cd07098 ALDH_F15-22 Aldehyde d 99.8 1.6E-20 3.4E-25 144.1 12.0 99 5-106 78-183 (465)
117 PRK15398 aldehyde dehydrogenas 99.8 1.1E-20 2.4E-25 145.4 10.5 68 36-106 121-192 (465)
118 cd07084 ALDH_KGSADH-like ALDH 99.8 1.4E-20 3E-25 143.9 10.6 100 4-106 56-160 (442)
119 cd06534 ALDH-SF NAD(P)+-depend 99.8 1.2E-19 2.5E-24 135.3 12.5 101 3-106 51-151 (367)
120 TIGR01092 P5CS delta l-pyrroli 99.8 7.8E-20 1.7E-24 146.6 10.9 95 6-107 358-454 (715)
121 cd07078 ALDH NAD(P)+ dependent 99.8 1.8E-19 3.9E-24 136.6 12.4 101 3-106 55-155 (432)
122 cd07127 ALDH_PAD-PaaZ Phenylac 99.8 9.5E-20 2.1E-24 142.5 11.0 98 6-106 149-256 (549)
123 PRK00197 proA gamma-glutamyl p 99.8 1.6E-19 3.4E-24 137.3 10.1 96 5-106 75-176 (417)
124 KOG2456|consensus 99.8 1.1E-19 2.4E-24 135.7 8.4 98 5-106 62-162 (477)
125 cd07079 ALDH_F18-19_ProA-GPR G 99.8 2.5E-19 5.4E-24 135.8 9.9 96 5-106 69-170 (406)
126 TIGR02518 EutH_ACDH acetaldehy 99.8 9.1E-19 2E-23 135.4 11.2 70 35-107 95-168 (488)
127 PRK13805 bifunctional acetalde 99.8 2.4E-18 5.2E-23 140.3 11.0 69 36-107 100-172 (862)
128 KOG2455|consensus 99.6 4E-16 8.7E-21 117.8 6.6 101 2-106 153-255 (561)
129 cd07080 ALDH_Acyl-CoA-Red_LuxC 99.6 2.5E-15 5.4E-20 114.6 6.6 63 36-102 104-166 (422)
130 KOG2454|consensus 99.5 2.6E-14 5.7E-19 107.1 7.7 94 4-100 145-241 (583)
131 KOG2453|consensus 99.4 9.5E-14 2.1E-18 102.6 4.2 95 2-99 111-205 (507)
132 KOG2452|consensus 99.4 2.9E-13 6.3E-18 103.8 4.4 66 6-71 522-590 (881)
133 PRK11905 bifunctional proline 97.8 9E-05 1.9E-09 63.4 7.9 52 33-90 1067-1118(1208)
134 PF05893 LuxC: Acyl-CoA reduct 97.7 0.00011 2.4E-09 56.2 5.6 59 38-100 81-139 (399)
135 COG0014 ProA Gamma-glutamyl ph 96.9 0.0076 1.6E-07 46.1 8.1 70 34-108 104-177 (417)
136 KOG4165|consensus 84.4 11 0.00023 28.9 8.1 63 34-101 101-163 (433)
137 PRK11809 putA trifunctional tr 81.4 9.1 0.0002 34.1 7.6 47 34-86 1177-1223(1318)
138 PRK13769 histidinol dehydrogen 80.8 18 0.00039 27.8 8.2 64 7-74 59-122 (368)
139 PF00815 Histidinol_dh: Histid 79.3 21 0.00045 27.9 8.3 40 34-74 96-138 (412)
140 COG4996 Predicted phosphatase 67.6 13 0.00029 24.7 4.1 49 44-98 55-104 (164)
141 PLN02926 histidinol dehydrogen 57.7 82 0.0018 24.8 7.5 66 7-74 84-152 (431)
142 PRK12447 histidinol dehydrogen 55.2 1E+02 0.0022 24.3 7.8 40 34-74 105-147 (426)
143 PF09129 Chol_subst-bind: Chol 49.9 22 0.00048 26.6 3.1 51 38-97 53-107 (321)
144 cd00733 GlyRS_alpha_core Class 49.7 8.5 0.00018 28.2 1.0 24 77-102 77-100 (279)
145 TIGR00069 hisD histidinol dehy 49.2 1.2E+02 0.0026 23.7 7.1 40 34-74 78-120 (393)
146 PRK00877 hisD bifunctional his 49.1 91 0.002 24.5 6.5 40 34-74 110-152 (425)
147 PRK09348 glyQ glycyl-tRNA synt 49.0 8.8 0.00019 28.1 1.0 11 77-87 81-91 (283)
148 TIGR00388 glyQ glycyl-tRNA syn 48.1 9.3 0.0002 28.2 1.0 24 77-102 78-101 (293)
149 PF02091 tRNA-synt_2e: Glycyl- 47.3 10 0.00022 28.0 1.0 24 77-102 76-99 (284)
150 PRK13770 histidinol dehydrogen 45.3 1.4E+02 0.003 23.5 6.9 40 34-74 100-142 (416)
151 cd06572 Histidinol_dh Histidin 43.5 1.2E+02 0.0026 23.6 6.3 40 34-74 82-124 (390)
152 COG0752 GlyQ Glycyl-tRNA synth 43.1 12 0.00026 27.4 0.9 12 77-88 82-93 (298)
153 COG0141 HisD Histidinol dehydr 39.2 1.9E+02 0.0042 22.8 9.0 41 33-74 105-148 (425)
154 KOG3768|consensus 38.5 26 0.00057 29.0 2.2 27 37-63 368-396 (888)
155 PF15048 OSTbeta: Organic solu 37.1 26 0.00056 22.8 1.6 10 52-61 33-42 (125)
156 cd08071 MPN_DUF2466 Mov34/MPN/ 31.9 36 0.00079 21.3 1.7 38 46-102 59-96 (113)
157 PTZ00158 40S ribosomal protein 31.4 1.5E+02 0.0033 19.3 5.1 44 57-106 6-50 (130)
158 PRK00136 rpsH 30S ribosomal pr 27.3 1.8E+02 0.0038 18.7 5.6 45 56-106 4-48 (130)
159 TIGR03065 srtB_sig_QVPTGV sort 25.5 43 0.00093 16.2 0.9 12 43-54 2-13 (32)
160 PRK08180 feruloyl-CoA synthase 25.5 2.4E+02 0.0052 22.4 5.7 37 47-87 254-290 (614)
161 COG1021 EntE Peptide arylation 24.9 49 0.0011 26.3 1.6 42 48-94 235-276 (542)
162 PF00220 Hormone_4: Neurohypop 24.6 39 0.00084 11.8 0.5 7 102-108 2-8 (9)
163 CHL00042 rps8 ribosomal protei 23.8 2.1E+02 0.0046 18.5 5.4 44 57-106 5-48 (132)
164 COG2006 Uncharacterized conser 23.6 1.1E+02 0.0025 22.7 3.2 29 71-102 36-75 (293)
165 PF00410 Ribosomal_S8: Ribosom 23.0 2.1E+02 0.0046 18.2 4.3 43 57-105 2-44 (129)
166 COG3581 Uncharacterized protei 23.0 2E+02 0.0043 22.7 4.5 46 56-104 50-104 (420)
167 PF14987 NADHdh_A3: NADH dehyd 20.7 33 0.00071 20.6 -0.0 10 50-59 47-56 (84)
168 PF03721 UDPG_MGDP_dh_N: UDP-g 20.1 1.7E+02 0.0037 19.8 3.4 41 58-102 99-140 (185)
No 1
>KOG2451|consensus
Probab=99.96 E-value=3.5e-29 Score=185.49 Aligned_cols=102 Identities=27% Similarity=0.331 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
||++|+..+..+++||++.+++..++..+...++.+..+.++|+||++.|+|||||..++.+|..+||++||| ||+|
T Consensus 117 eA~gEv~y~a~f~eWyAeEA~RvyGdii~s~~~~rr~i~ikQPvGV~alItPWNFP~AMItRK~gAALAaGCT---vVvk 193 (503)
T KOG2451|consen 117 EAKGEVAYSAAFFEWYAEEARRVYGDIIPSLNPNRRLIVIKQPVGVVALITPWNFPAAMITRKAGAALAAGCT---VVVK 193 (503)
T ss_pred hccceeehhHHHHHHHHHHhhhhhccccCCCCCCceEEEEeccceeEEEecCcCChHHHHHhHHHHHHhcCce---EEEc
Confidence 6788999999999999999999999987766667788999999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.||++++.++++.++||+|.|-
T Consensus 194 Ps~~TPlsaLala~lA~~AGiP~Gv 218 (503)
T KOG2451|consen 194 PSEDTPLSALALAKLAEEAGIPAGV 218 (503)
T ss_pred cCCCCchHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999873
No 2
>KOG2450|consensus
Probab=99.96 E-value=2.8e-29 Score=190.70 Aligned_cols=99 Identities=26% Similarity=0.394 Sum_probs=90.9
Q ss_pred hH-HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 3 GI-GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 3 a~-~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++ .|+..+++.+|||++|+++..+...+.+ .+...+++++|+|||+.|+|||||+++..||++|||++||+ ||+|
T Consensus 117 a~~~Dl~~~~~~~ry~ag~ad~~~~~~~~~~-~~~~~yt~~eP~GV~G~I~pWN~Pllm~awKlaPALa~GNt---vV~K 192 (501)
T KOG2450|consen 117 ALVSDLPPAIDCFRYYAGWADKIHGSTIPTD-GEFFAYTRREPIGVCGQIIPWNFPLLMQAWKLAPALAAGNT---VVLK 192 (501)
T ss_pred hhhcCchhhhhHHHhhccchhhcccccCCCC-CceEEEecCCcceeeeEeccCchHHHHHHHhhhhHHhhCcE---EEec
Confidence 44 6899999999999999999976655443 45688999999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
|||+||++++.+++++++||.|.|
T Consensus 193 pae~tplsal~~~~l~~eaG~P~G 216 (501)
T KOG2450|consen 193 PAEQTPLTALYLASLCKEAGFPPG 216 (501)
T ss_pred CCCCCCchHHHHHHHhHHhcCCcc
Confidence 999999999999999999999987
No 3
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=99.94 E-value=5.7e-27 Score=180.28 Aligned_cols=101 Identities=30% Similarity=0.453 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|++.|+..+++.++||++.++++.++..+.+. +...++.++|+|||++|+|||||+.+.++|++|||++||+ ||+|
T Consensus 92 ea~~ei~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~P~GVv~~I~PwNfP~~~~~~k~apALaaGnt---VV~K 167 (472)
T COG1012 92 EARGEIARAADFIRYYAEEARRLEGETIPTDK-GSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNT---VVLK 167 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC-CcceEEEeecceEEEEECCCCCHHHHHHhhHHHHHHcCCE---EEEE
Confidence 56678999999999999999988877533332 5678999999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.||+++..+++++.++|.|.|.
T Consensus 168 Pse~tp~sa~~l~~~~~~aglP~Gv 192 (472)
T COG1012 168 PSEQTPLSALALAELAAEAGLPAGV 192 (472)
T ss_pred CcccCcHHHHHHHHHHHHhCCCCCe
Confidence 9999999999999999999998874
No 4
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=99.94 E-value=3.3e-26 Score=176.66 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCcc--CCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSIL--PSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
+++.|+..+++.++||++.+++..++.. +....+...+++|+|+|||++|+|||||+.+.++++++||++||+ ||
T Consensus 98 ~a~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~v~r~P~GVV~~I~PwNfP~~l~~~~ia~ALaaGN~---VV 174 (489)
T cd07126 98 QALGEVVVTRKFLENFAGDQVRFLARSFNVPGDHQGQQSSGYRWPYGPVAIITPFNFPLEIPALQLMGALFMGNK---PL 174 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCCCCceeEEEEecceEEEEECCCchHHHHHHHHHHHHHHcCCE---EE
Confidence 4667999999999999999887765542 222224467899999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+||||.+|+++..+++++.++|++.+.
T Consensus 175 lKPSe~tp~~~~~l~~~~~~aGlP~gv 201 (489)
T cd07126 175 LKVDSKVSVVMEQFLRLLHLCGMPATD 201 (489)
T ss_pred EECCCCCCHHHHHHHHHHHHhCcCcCc
Confidence 999999999999999999999998764
No 5
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=99.94 E-value=3.4e-26 Score=179.86 Aligned_cols=102 Identities=23% Similarity=0.282 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|++.|+..+++.++||++++++..++..+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 207 ea~~EV~~~i~~~~~~a~~a~~~~g~~~~~~~~~~~~~~~reP~GVV~~I~PwNfPl~l~~~~iapALaAGNt---VVlK 283 (604)
T PLN02419 207 DSHGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNT---FILK 283 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccCCCccceEEecCccEEEEECCCccHHHHHHHHHHHHHHcCCE---EEEe
Confidence 5667999999999999999988776543322223456789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|++++.+++++.++|+|.|.
T Consensus 284 PSe~tp~ta~~l~~l~~eAGlP~Gv 308 (604)
T PLN02419 284 PSEKDPGASVILAELAMEAGLPDGV 308 (604)
T ss_pred CCCCCcHHHHHHHHHHHHhCcCcce
Confidence 9999999999999999999999874
No 6
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=99.93 E-value=9.6e-26 Score=173.87 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++++++..++..+....+...+++|+|+|||++|+|||||+.+.+++++|||++||+ ||+|
T Consensus 104 ~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~---VVlK 180 (482)
T PRK11241 104 EAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCT---MVLK 180 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEeeceEEEEECCCcChHHHHHHHHHHHHHhCCE---EEEE
Confidence 4567999999999999999888766543332223456789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
|||.+|+++..++++++++|.|.+
T Consensus 181 Ps~~tp~~~~~l~~~~~~aglP~g 204 (482)
T PRK11241 181 PASQTPFSALALAELAIRAGIPAG 204 (482)
T ss_pred CCCCChHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999865
No 7
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=99.93 E-value=1.3e-25 Score=170.22 Aligned_cols=102 Identities=27% Similarity=0.314 Sum_probs=90.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|++.|+..+++.++||++++++..+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 29 ea~~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~---VvlK 105 (409)
T PRK10090 29 LAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNT---IVIK 105 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCceeEEEEecccEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 5667999999999999999988766543322223457889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|.+++.++++++++|.+.++
T Consensus 106 ps~~~p~~~~~l~~~~~~aglP~gv 130 (409)
T PRK10090 106 PSEFTPNNAIAFAKIVDEIGLPKGV 130 (409)
T ss_pred CCCcChHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999999875
No 8
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=99.92 E-value=8.4e-25 Score=167.85 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++.+++..+..... ..+...+++++|+|||++|+|||||+.+.+++++|||++||+ ||+|
T Consensus 85 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GvV~~I~PwN~P~~~~~~~~~~ALaaGN~---vv~K 160 (462)
T PRK13968 85 QARAEVAKSANLCDWYAEHGPAMLKAEPTL-VENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPILLAGNG---YLLK 160 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccc-CCCceEEEEEeccceEEEEcCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 456799999999999999988775443221 224467899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|+++..+++++.++|+|.+.
T Consensus 161 Ps~~tp~~~~~l~~~~~~aGlP~gv 185 (462)
T PRK13968 161 HAPNVMGCAQLIAQVFKDAGIPQGV 185 (462)
T ss_pred CCCcChHHHHHHHHHHHHcCcCcCc
Confidence 9999999999999999999999875
No 9
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=99.92 E-value=8.2e-25 Score=169.62 Aligned_cols=102 Identities=54% Similarity=0.934 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++.++++.+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 112 ~a~~ev~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~---VVlK 188 (508)
T PLN02315 112 EGIGEVQEIIDMCDFAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNC---VVWK 188 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecceEEEEECCCcchHHHHHHHHhHHHHcCCE---EEee
Confidence 4667999999999999999888766543332223345678999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHH----HHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQT----LAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~----l~~~~~~ag~~~~~ 106 (109)
|||.+|+++.. +++++.++|+|.+.
T Consensus 189 Ps~~tp~~~~~~~~l~~~~~~~aGlP~gv 217 (508)
T PLN02315 189 GAPTTPLITIAMTKLVAEVLEKNNLPGAI 217 (508)
T ss_pred CCCcChHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999987 67888999998774
No 10
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=99.92 E-value=1.1e-24 Score=166.95 Aligned_cols=102 Identities=21% Similarity=0.150 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
++..|+..+++.++||++.++++.+...... ......+++++|+|||++|+|||||+.+.++++++||++||+ ||
T Consensus 79 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~Pl~~~~~~~~~ALaaGN~---VV 155 (457)
T PRK09406 79 SAKAEALKCAKGFRYYAEHAEALLADEPADAAAVGASRAYVRYQPLGVVLAVMPWNFPLWQVVRFAAPALMAGNV---GL 155 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCceEEEEEecceeEEEECCccchHHHHHHHHHHHHHcCCE---EE
Confidence 4667999999999999999988765432211 122356889999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+|||+.+|+++..+++++.++|++.++
T Consensus 156 ~Kps~~~p~~~~~l~~l~~~aGlP~gv 182 (457)
T PRK09406 156 LKHASNVPQTALYLADLFRRAGFPDGC 182 (457)
T ss_pred EECCCcCcHHHHHHHHHHHHhCCCcCc
Confidence 999999999999999999999999876
No 11
>PLN02467 betaine aldehyde dehydrogenase
Probab=99.92 E-value=1.1e-24 Score=168.65 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCcc---CCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSIL---PSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQV 78 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~v 78 (109)
+++.|+..+++.++||+++++++.++.. .....+...+++|+|+|||++|+|||||+.+.++++++||++||+ |
T Consensus 106 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~---V 182 (503)
T PLN02467 106 EAAWDMDDVAGCFEYYADLAEALDAKQKAPVSLPMETFKGYVLKEPLGVVGLITPWNYPLLMATWKVAPALAAGCT---A 182 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCceeEEEEecCceEEEECCCChHHHHHHHHHHHHHHcCCE---E
Confidence 4567999999999999999998866431 111123356889999999999999999999999999999999999 9
Q ss_pred EEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 79 ALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 79 vlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+||||.+|+++..++++++++|.+.++
T Consensus 183 v~Kps~~tp~~~~~l~~~~~eag~P~gv 210 (503)
T PLN02467 183 VLKPSELASVTCLELADICREVGLPPGV 210 (503)
T ss_pred EEECCCcCcHHHHHHHHHHHHcCcCcCe
Confidence 9999999999999999999999999775
No 12
>PLN02278 succinic semialdehyde dehydrogenase
Probab=99.92 E-value=1.8e-24 Score=167.34 Aligned_cols=102 Identities=27% Similarity=0.327 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|+..|+..+++.++||++.++++.+...+....+...++.|+|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 118 ~a~~Ev~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~P~~~~~~~i~~ALaaGN~---VVlK 194 (498)
T PLN02278 118 EAIGEVAYGASFLEYFAEEAKRVYGDIIPSPFPDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALAAGCT---VVVK 194 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEeecccEEEEECCCccHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4567999999999999999988766543332223456788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|++++.+++++.++|.+.+.
T Consensus 195 ps~~tp~~~~~l~~~l~eaglP~gv 219 (498)
T PLN02278 195 PSELTPLTALAAAELALQAGIPPGV 219 (498)
T ss_pred CCCCChHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999998765
No 13
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=99.92 E-value=2.1e-24 Score=164.91 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|++..+++..+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 75 ~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~---VvlK 151 (448)
T TIGR01780 75 EAKGEILYAASFLEWFAEEAKRVYGDTIPSPQSDKRLLVIKQPVGVCAAITPWNFPAAMITRKAGAALAAGCT---VVVK 151 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEeeeeEEEEEcCCChHHHHHHHHHHHHHHcCCe---EeeE
Confidence 4567899999999999998888766543332234455778999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|++++.++++|+++|.+.++-
T Consensus 152 ps~~~p~~~~~l~~~~~~aGlP~gvv 177 (448)
T TIGR01780 152 PAEQTPLSALALARLAEQAGIPKGVL 177 (448)
T ss_pred CCccchHHHHHHHHHHHHcCCCccce
Confidence 99999999999999999999998763
No 14
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=99.92 E-value=2e-24 Score=167.50 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++.+++..++..+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 125 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~P~~~~~~~i~~ALaaGN~---VVlK 201 (511)
T TIGR01237 125 EADAEVAEAIDFCEYYAREMERLAGQGVNLDIEGETNRYFYQPRGVAVVISPWNFPMAIAVGMTVAPIVTGNC---VVLK 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecceeEEEECCCCcHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4567899999999999999988876543222234456888999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|+++..+++++.++|.+.+.
T Consensus 202 Ps~~tp~~~~~l~~~~~~aGlP~gv 226 (511)
T TIGR01237 202 PAETSTVIAAKIVEILIEAGLPPGV 226 (511)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999875
No 15
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=99.92 E-value=2.7e-24 Score=165.26 Aligned_cols=102 Identities=33% Similarity=0.491 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++.++++.+........+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 93 ~a~~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~Pl~~~~~~i~~ALaaGN~---VIlK 169 (473)
T cd07097 93 EARGEVTRAGQIFRYYAGEALRLSGETLPSTRPGVEVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNT---VVFK 169 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEEeeeeEEEEcccChHHHHHHHHHHHHHHcCCE---EEEe
Confidence 4567899999999999999888776543322234456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..+++++.++|.+.+.
T Consensus 170 ps~~~p~~~~~l~~~~~~aGlP~gv 194 (473)
T cd07097 170 PAELTPASAWALVEILEEAGLPAGV 194 (473)
T ss_pred CCCCCcHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999764
No 16
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=99.92 E-value=2.4e-24 Score=167.13 Aligned_cols=101 Identities=21% Similarity=0.106 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcC--------CccCCCCCC-ceeeEeeee-ceeEEEEcccchhHHHHHHHHHHHHhc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSG--------SILPSERPG-HVLLENWNP-LGVVGIISAFNFPVAVYGWNAAIALPG 71 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~-~~~~~~~~P-~GVv~~I~PwN~P~~~~~~k~~pAL~a 71 (109)
+++.|+..+++.++||+++++++.+ +..+....+ ...++.++| +|||++|+|||||+.+.++++++||++
T Consensus 92 ea~~Ev~~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~pwN~P~~~~~~~~~~ALaa 171 (513)
T cd07128 92 DSWIDIDGGIGTLFAYASLGRRELPNAHFLVEGDVEPLSKDGTFVGQHILTPRRGVAVHINAFNFPVWGMLEKFAPALLA 171 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCccccceEEEEecccEEEEECCcccHHHHHHHHHHHHHHc
Confidence 4667999999999999999887653 211211112 134678999 599999999999999999999999999
Q ss_pred CCCCCcEEEecCCCchHHHHHHHHHHHhcC-cccC
Q psy3661 72 WQVLGQVALVGVEVVPRWFQTLAKTLKNQN-QIQK 105 (109)
Q Consensus 72 GNt~~~vvlKpse~tp~~~~~l~~~~~~ag-~~~~ 105 (109)
||+ ||+||||.+|++++.+++++.++| .+.+
T Consensus 172 GN~---VVlKPs~~tp~~~~~l~~~~~eaG~lP~g 203 (513)
T cd07128 172 GVP---VIVKPATATAYLTEAVVKDIVESGLLPEG 203 (513)
T ss_pred CCE---EEEECCCCCCHHHHHHHHHHHHhCCCCCC
Confidence 999 999999999999999999999999 7755
No 17
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=99.91 E-value=3.4e-24 Score=164.08 Aligned_cols=102 Identities=26% Similarity=0.332 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|++.+++.++|+++.++++.+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 77 ~a~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~i~~ALaaGN~---Vi~K 153 (454)
T cd07118 77 QARGEIEGAADLWRYAASLARTLHGDSYNNLGDDMLGLVLREPIGVVGIITPWNFPFLILSQKLPFALAAGCT---VVVK 153 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceeeEEeecceEEEEECCCCcHHHHHHHHHHHHHhcCCE---EEEE
Confidence 4567999999999999998877765443322223456789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|.++..++++++++|.+.+.
T Consensus 154 ps~~~p~~~~~l~~~~~~aG~P~g~ 178 (454)
T cd07118 154 PSEFTSGTTLMLAELLIEAGLPAGV 178 (454)
T ss_pred CCCCCcHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999998763
No 18
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=99.91 E-value=2.9e-24 Score=166.32 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++||++.+++..++..+.. .....++.++|+|||++|+|||||+.+..+++++||++||+ ||+||||
T Consensus 120 ~ev~~~~~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~---VVlKPs~ 195 (501)
T PLN02766 120 VDIPAAAGLLRYYAGAADKIHGETLKMS-RQLQGYTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCT---MVVKPAE 195 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeccC-CCceEEEEeccceEEEEECCCCChHHHHHHHHHHHHHcCCE---EEEeCCC
Confidence 4889999999999999888776543322 23356788999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|+++..++++++++|+|.+.
T Consensus 196 ~tp~~~~~l~~~~~~aGlP~gv 217 (501)
T PLN02766 196 QTPLSALFYAHLAKLAGVPDGV 217 (501)
T ss_pred CchHHHHHHHHHHHhcCCCcCc
Confidence 9999999999999999999875
No 19
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=99.91 E-value=3.3e-24 Score=165.47 Aligned_cols=99 Identities=22% Similarity=0.372 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCC---CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSE---RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++||++++++..++..+.. ......++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 105 ~ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~r~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~---VVlK 181 (486)
T cd07140 105 THVGMSIQTFRYFAGWCDKIQGKTIPINQARPNRNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAACLAAGNT---VVLK 181 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEeeccceEEEEcCCchHHHHHHHHHHHHHHhCCE---EEEE
Confidence 5899999999999999988766543321 112246789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|.++..+++++.++|++.|.
T Consensus 182 Ps~~tp~~~~~l~~~~~~aglP~gv 206 (486)
T cd07140 182 PAQVTPLTALKFAELTVKAGFPKGV 206 (486)
T ss_pred CCccCcHHHHHHHHHHHHcCcCCCc
Confidence 9999999999999999999999875
No 20
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=99.91 E-value=4.7e-24 Score=165.01 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccC-CCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILP-SERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
++..|+..+++.++||++.++++.++... ....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+
T Consensus 111 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~---VVl 187 (500)
T cd07083 111 EAIDDVAEAIDFIRYYARAALRLRYPAVEVVPYPGEDNESFYVGLGAGVVISPWNFPVAIFTGMIVAPVAVGNT---VIA 187 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCceEEEEEeccceEEEEcCCccHHHHHHHHHHHHHHcCCe---EEE
Confidence 45678999999999999999887665321 11224456788999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
|||+.+|+++..++++++++|.+.+.-
T Consensus 188 KPs~~tp~~~~~l~~~~~eaGlP~gvv 214 (500)
T cd07083 188 KPAEDAVVVGYKVFEIFHEAGFPPGVV 214 (500)
T ss_pred eCCCcchHHHHHHHHHHHHcCCCCCce
Confidence 999999999999999999999998753
No 21
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=99.91 E-value=4.7e-24 Score=165.48 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|++.|+..+++.++||++.++++..........+...+++++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 129 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~---VVlK 205 (514)
T PRK03137 129 EADADTAEAIDFLEYYARQMLKLADGKPVESRPGEHNRYFYIPLGVGVVISPWNFPFAIMAGMTLAAIVAGNT---VLLK 205 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceEEEEEecCcEEEEECCCccHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4567899999999999999887753321111234457889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|+++..+++++.++|.+.+.
T Consensus 206 Ps~~tp~~a~~l~~~l~~aGlP~gv 230 (514)
T PRK03137 206 PASDTPVIAAKFVEVLEEAGLPAGV 230 (514)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999764
No 22
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=99.91 E-value=5.1e-24 Score=165.20 Aligned_cols=102 Identities=25% Similarity=0.276 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|++.|+..+++.++||++.++++.+...+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 125 ea~~ev~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~---VVlK 200 (512)
T cd07124 125 EADADVAEAIDFLEYYAREMLRLRGFPVEMV-PGEDNRYVYRPLGVGAVISPWNFPLAILAGMTTAALVTGNT---VVLK 200 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCC-CCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4567899999999999999988855433322 24467899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|+++..+++++.++|.+.++-
T Consensus 201 Ps~~tp~~~~~l~~~~~~aGlP~gvv 226 (512)
T cd07124 201 PAEDTPVIAAKLVEILEEAGLPPGVV 226 (512)
T ss_pred CCccccHHHHHHHHHHHHhCcCCCce
Confidence 99999999999999999999998763
No 23
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=99.91 E-value=5.6e-24 Score=162.92 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCC----CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSE----RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++.|+..+++.++|+++.++++.+...+.. ..+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 78 ~a~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~--- 154 (455)
T cd07148 78 DAKVEVTRAIDGVELAADELGQLGGREIPMGLTPASAGRIAFTTREPIGVVVAISAFNHPLNLIVHQVAPAIAAGCP--- 154 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEEEEecceEEEEECCCCcHHHHHHHHHHHHHHcCCE---
Confidence 4567899999999999999888766533321 123456889999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+||||.+|+++..++++++++|++.++
T Consensus 155 VvlKps~~~p~~~~~l~~~~~~aGlP~gv 183 (455)
T cd07148 155 VIVKPALATPLSCLAFVDLLHEAGLPEGW 183 (455)
T ss_pred EEeeCCCcccHHHHHHHHHHHHcCCCcCc
Confidence 99999999999999999999999999875
No 24
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=99.91 E-value=5.4e-24 Score=163.81 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=87.2
Q ss_pred chHH-HHHHHHHHHHHHHHhhhhhcCCccCCC-----CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCC
Q psy3661 2 RGIG-EVQEVIDICDYAVGLSRTYSGSILPSE-----RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVL 75 (109)
Q Consensus 2 ~a~~-ev~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~ 75 (109)
+++. |+..+++.++|+++++++..++..+.. ..+...+++++|+|||++|+|||||+.+.++++++||++||+
T Consensus 94 ~a~~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~- 172 (477)
T cd07113 94 LSRAFEVGQSANFLRYFAGWATKINGETLAPSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIAVWKIGAALATGCT- 172 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCceEEEEEeecceEEEEcCCChHHHHHHHHHHHHHHcCCE-
Confidence 3443 899999999999999887765433211 112356789999999999999999999999999999999999
Q ss_pred CcEEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 76 GQVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 76 ~~vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..++++++++|+|.+.
T Consensus 173 --VvlKPs~~tp~~~~~l~~~~~~aglP~gv 201 (477)
T cd07113 173 --IVIKPSEFTPLTLLRVAELAKEAGIPDGV 201 (477)
T ss_pred --EEEECCCCCcHHHHHHHHHHHHcCcCCCc
Confidence 99999999999999999999999998764
No 25
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=99.91 E-value=6.1e-24 Score=162.83 Aligned_cols=101 Identities=26% Similarity=0.319 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++.+++..+...+.. .+...++.|+|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 76 ~a~~Ev~~~i~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~---vvlK 151 (455)
T cd07120 76 EARFEISGAISELRYYAGLARTEAGRMIEPE-PGSFSLVLREPMGVAGIIVPWNSPVVLLVRSLAPALAAGCT---VVVK 151 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccC-CCceEEEEEecceeEEEECCCchHHHHHHHHHHHHHHcCCE---EEeE
Confidence 4667999999999999999988766543322 24467899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHh-cCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKN-QNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~-ag~~~~~ 106 (109)
||+.+|+++..+++++++ +|.+.+.
T Consensus 152 ps~~~~~~~~~l~~~~~~aag~P~g~ 177 (455)
T cd07120 152 PAGQTAQINAAIIRILAEIPSLPAGV 177 (455)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999 7998765
No 26
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=99.91 E-value=6.5e-24 Score=161.52 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=88.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCc-cCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSI-LPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
+++.|+..+++.++||++.++++.+.. .+. ++...+++++|+|||++|+|||||+.+.++++++||++||+ ||+
T Consensus 55 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~P~GvV~~I~P~N~Pl~~~~~~~~~ALaaGN~---VV~ 129 (429)
T cd07100 55 EARAEVEKCAWICRYYAENAEAFLADEPIET--DAGKAYVRYEPLGVVLGIMPWNFPFWQVFRFAAPNLMAGNT---VLL 129 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeeccC--CCceEEEEEEeeeEEEEEcCCchHHHHHHHHHHHHHHcCCE---EEE
Confidence 456789999999999999998876432 222 23456889999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||||.+|+++..|+++++++|.+.+.
T Consensus 130 Kps~~~p~~~~~l~~~l~~aglP~gv 155 (429)
T cd07100 130 KHASNVPGCALAIEELFREAGFPEGV 155 (429)
T ss_pred ECCCcchHHHHHHHHHHHHcCCCcCc
Confidence 99999999999999999999999875
No 27
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=99.91 E-value=5.4e-24 Score=163.75 Aligned_cols=98 Identities=26% Similarity=0.385 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++||++++++..+...+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+||||
T Consensus 103 ~ev~~~~~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~---VV~KPs~ 178 (476)
T cd07142 103 AEVPLAARLFRYYAGWADKIHGMTLPAD-GPHHVYTLHEPIGVVGQIIPWNFPLLMFAWKVGPALACGNT---IVLKPAE 178 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccC-CCceEEEEEeceeeEEEECCCccHHHHHHHHHHHHHHcCCE---EEEECCC
Confidence 4899999999999999888766544322 22356789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|+++..++++++++|.+.+.
T Consensus 179 ~tp~~~~~l~~~~~~aGlP~gv 200 (476)
T cd07142 179 QTPLSALLAAKLAAEAGLPDGV 200 (476)
T ss_pred cccHHHHHHHHHHHHcCcCccc
Confidence 9999999999999999998764
No 28
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=99.91 E-value=5.5e-24 Score=165.94 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++||++++++..+...+.. .+...++.++|+|||++|+|||||+.+.+++++|||++||+ ||+||||
T Consensus 157 ~Ev~~~~~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~l~~~~i~pALaaGN~---VVlKPs~ 232 (538)
T PLN02466 157 AELPMFARLFRYYAGWADKIHGLTVPAD-GPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNT---IVLKTAE 232 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccC-CCceEEEEEecceEEEEECCCchHHHHHHHHHhHHHHcCCE---EEeECCC
Confidence 4899999999999999988776544432 22346889999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|++++.++++++++|++.+.
T Consensus 233 ~tp~~~~~l~~ll~eaGlP~gv 254 (538)
T PLN02466 233 QTPLSALYAAKLLHEAGLPPGV 254 (538)
T ss_pred CCcHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999775
No 29
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=99.91 E-value=6.2e-24 Score=163.53 Aligned_cols=101 Identities=22% Similarity=0.356 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|+++.+++..++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 93 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~---VilK 168 (482)
T cd07119 93 ESEIDIDDVANCFRYYAGLATKETGEVYDVP-PHVISRTVREPVGVCGLITPWNYPLLQAAWKLAPALAAGNT---VVIK 168 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCC-CCceEEEEEeeeeeEEEEcCCchHHHHHHHHHHHHHhcCCE---EEEE
Confidence 4567899999999999999887655543322 34457899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++|.++|.+.++
T Consensus 169 ps~~~p~~~~~l~~~~~~aGlP~gv 193 (482)
T cd07119 169 PSEVTPLTTIALFELIEEAGLPAGV 193 (482)
T ss_pred CCccccHHHHHHHHHHHHcCCCcCc
Confidence 9999999999999999999999875
No 30
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=99.91 E-value=7.3e-24 Score=162.05 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||++..++..+...+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 76 ~a~~ev~~~~~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~---VvlK 151 (454)
T cd07109 76 QARADVEAAARYFEYYGGAADKLHGETIPLG-PGYFVYTVREPHGVTGHIIPWNYPLQITGRSVAPALAAGNA---VVVK 151 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccC-CCceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4556899999999999999888776544332 34467899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|+++..++++++++|++.++-
T Consensus 152 ps~~~p~~~~~l~~~~~~aGlP~gv~ 177 (454)
T cd07109 152 PAEDAPLTALRLAELAEEAGLPAGAL 177 (454)
T ss_pred CCCCChHHHHHHHHHHHHcCcCccce
Confidence 99999999999999999999998763
No 31
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=99.91 E-value=5.7e-24 Score=162.05 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++|+++.+.+..+...... .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 56 ea~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~---VI~K 131 (431)
T cd07095 56 EAQTEVAAMAGKIDISIKAYHERTGERATPM-AQGRAVLRHRPHGVMAVFGPFNFPGHLPNGHIVPALLAGNT---VVFK 131 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCceEEEEEecceEEEEECCCchHHHHHHHHHHHHHhcCCE---EEee
Confidence 4566899999999999998887765543222 24467889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|+++..+++++.++|.+.++-
T Consensus 132 ps~~~~~~~~~l~~~~~~ag~P~g~~ 157 (431)
T cd07095 132 PSELTPAVAELMVELWEEAGLPPGVL 157 (431)
T ss_pred CCCCCcHHHHHHHHHHHHhCcChhHh
Confidence 99999999999999999999998763
No 32
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=99.91 E-value=7.5e-24 Score=163.04 Aligned_cols=103 Identities=56% Similarity=0.871 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|+++.++++.++..+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 91 ~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~---VIlK 167 (478)
T cd07086 91 EGLGEVQEMIDICDYAVGLSRMLYGLTIPSERPGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNT---VVWK 167 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEecceeEEEECCCCcHHHHHHHHHHHHHHcCCe---EEEE
Confidence 3556899999999999999988776543332223456789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhc----CcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQ----NQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~a----g~~~~~~ 107 (109)
||+.+|+++..++++++++ |++.++-
T Consensus 168 ps~~~p~~~~~l~~~~~~al~~~glP~gvv 197 (478)
T cd07086 168 PSETTPLTAIAVTKILAEVLEKNGLPPGVV 197 (478)
T ss_pred CCCcchHHHHHHHHHHHHhhhccCCCccce
Confidence 9999999999999999999 9998763
No 33
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=99.91 E-value=7.5e-24 Score=162.53 Aligned_cols=103 Identities=29% Similarity=0.293 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++|+++.+++..++..+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 88 ~a~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~---Vi~K 164 (465)
T cd07151 88 KANIEWGAAMAITREAATFPLRMEGRILPSDVPGKENRVYREPLGVVGVISPWNFPLHLSMRSVAPALALGNA---VVLK 164 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcCccccCCCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4556899999999999998887765443322234456788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHH-HHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWF-QTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~-~~l~~~~~~ag~~~~~~ 107 (109)
|||.+|+++ ..++++++++|.+.++-
T Consensus 165 ps~~~p~~~~~~l~~~l~~aG~P~gvv 191 (465)
T cd07151 165 PASDTPITGGLLLAKIFEEAGLPKGVL 191 (465)
T ss_pred CCCCCcHhHHHHHHHHHHHcCcCccce
Confidence 999999996 79999999999998763
No 34
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.91 E-value=6.3e-24 Score=168.85 Aligned_cols=101 Identities=18% Similarity=0.040 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhc--------CCccCCCCC-CceeeEeeeec-eeEEEEcccchhHHHHHHHHHHHHhc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYS--------GSILPSERP-GHVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPG 71 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~--------~~~~~~~~~-~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~pAL~a 71 (109)
+++.|++.+++.++||++.+++.. ++..+.... +...++.|+|+ |||++|+|||||+.+..++++|||++
T Consensus 92 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~Gvv~~I~pwN~P~~~~~~~~~~ALaa 171 (663)
T TIGR02278 92 DNWVDIDGGIGTLFTYSSLGRRELPDANLIPEDEFEPLSKDGSFQGRHILTPKGGVAVQINAFNFPVWGLLEKFAPAFLA 171 (663)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccccCCceeccCCCCccceEEEEEeCCceEEEEcCCchHHHHHHHHHHHHHHc
Confidence 466799999999999999988743 222222111 12457899998 99999999999999999999999999
Q ss_pred CCCCCcEEEecCCCchHHHHHHHHHHHhcC-cccC
Q psy3661 72 WQVLGQVALVGVEVVPRWFQTLAKTLKNQN-QIQK 105 (109)
Q Consensus 72 GNt~~~vvlKpse~tp~~~~~l~~~~~~ag-~~~~ 105 (109)
||+ ||+||||.+|++++.+++++.++| .+.|
T Consensus 172 GN~---Vv~KPs~~tp~~~~~l~~~~~~aG~lP~g 203 (663)
T TIGR02278 172 GVP---TLAKPATPTAYVAEALVRTMVESGLLPEG 203 (663)
T ss_pred CCE---EEEECCCcchHHHHHHHHHHHHhCCCCCC
Confidence 999 999999999999999999999999 7876
No 35
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=99.91 E-value=7.7e-24 Score=162.93 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|+++.++...++..+....+...++.++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 94 ~a~~ev~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~---VvlK 170 (478)
T cd07085 94 DARGDVLRGLEVVEFACSIPHLLKGEYLENVARGIDTYSYRQPLGVVAGITPFNFPAMIPLWMFPMAIACGNT---FVLK 170 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCeecccCCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHhcCCE---EEEE
Confidence 4567899999999999988777666543321223456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++++++|.+.+.
T Consensus 171 ps~~tp~~~~~l~~~l~~aGlP~gv 195 (478)
T cd07085 171 PSERVPGAAMRLAELLQEAGLPDGV 195 (478)
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999775
No 36
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=99.91 E-value=9.5e-24 Score=160.66 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 3 a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
++.|+..+++.++|+++.+++..+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+||
T Consensus 57 ~~~ei~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~---VVlKp 133 (432)
T cd07105 57 AGFNVDLAAGMLREAASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPVILGTRAIAYPLAAGNT---VVLKA 133 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeecccCCCCceeEEEEecceEEEEECCcCcHHHHHHHHHHHHHhcCCE---EEEEC
Confidence 456889999999999998887644433322234456889999999999999999999999999999999999 99999
Q ss_pred CCCchHHHHHHHHHHHhcCcccCC
Q psy3661 83 VEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 83 se~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+.+|+++..+++++.++|.|.++
T Consensus 134 s~~~p~~~~~l~~~~~~aGlP~gv 157 (432)
T cd07105 134 SELSPRTHWLIGRVFHEAGLPKGV 157 (432)
T ss_pred CccChHHHHHHHHHHHHcCcCCCc
Confidence 999999999999999999999875
No 37
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=99.91 E-value=9e-24 Score=162.98 Aligned_cols=100 Identities=22% Similarity=0.116 Sum_probs=84.4
Q ss_pred chHH-HHHHHHHHHHHHHHhhhhhcCCcc---CCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIG-EVQEVIDICDYAVGLSRTYSGSIL---PSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~-ev~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
++.. |+..+++.++|+++.++++.+... .....+...++.|+|+|||++|+|||||+.+.++++++||++||+
T Consensus 66 ~a~~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~--- 142 (484)
T PLN02174 66 ESSVYEVSLLRNSIKLALKQLKNWMAPEKAKTSLTTFPASAEIVSEPLGVVLVISAWNYPFLLSIDPVIGAISAGNA--- 142 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcceEEEEecceEEEEECCCccHHHHHHHHHHHHHHcCCE---
Confidence 3433 899999999999999888766311 111123356899999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
||+||||.||+++..+++++++ +++.+
T Consensus 143 VVlKPse~tp~~~~~l~~l~~~-~lp~g 169 (484)
T PLN02174 143 VVLKPSELAPASSALLAKLLEQ-YLDSS 169 (484)
T ss_pred EEEECCCCCHHHHHHHHHHHHH-hCCCC
Confidence 9999999999999999999998 67655
No 38
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=99.91 E-value=1.1e-23 Score=161.26 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCC---ccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGS---ILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQV 78 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~v 78 (109)
++..|+..+++.++||++.++++... ..+....+...++.++|+|||++|+|||||+.+.++++++||++||+ |
T Consensus 75 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~---V 151 (456)
T cd07110 75 EAAWDVDDVAGCFEYYADLAEQLDAKAERAVPLPSEDFKARVRREPVGVVGLITPWNFPLLMAAWKVAPALAAGCT---V 151 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCceeEEEEecceeEEEECCCChHHHHHHHHHHHHHHcCCE---E
Confidence 35568899999999999999887431 22222224456889999999999999999999999999999999999 9
Q ss_pred EEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 79 ALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 79 vlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+|||+.+|+++..++++++++|.+.++
T Consensus 152 V~Kps~~~p~~~~~l~~~~~~aGlP~gv 179 (456)
T cd07110 152 VLKPSELTSLTELELAEIAAEAGLPPGV 179 (456)
T ss_pred EEECcccchHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999875
No 39
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=99.91 E-value=1e-23 Score=161.38 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=90.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++||++.+++..++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 75 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~---Vv~K 150 (457)
T cd07090 75 EARVDIDSSADCLEYYAGLAPTLSGEHVPLP-GGSFAYTRREPLGVCAGIGAWNYPIQIASWKSAPALACGNA---MVYK 150 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCeeeccC-CCceEEEEEeecceEEEECCCccHHHHHHHHHHHHHhcCCe---eeec
Confidence 4567899999999999999888765543332 24466889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|.++..+++++.++|.+.++-
T Consensus 151 ps~~~~~~~~~l~~~~~~aGlP~g~~ 176 (457)
T cd07090 151 PSPFTPLTALLLAEILTEAGLPDGVF 176 (457)
T ss_pred CCCcCcHHHHHHHHHHHHcCCCcccE
Confidence 99999999999999999999998873
No 40
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=99.91 E-value=1.1e-23 Score=162.60 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.+++++++..+..++.... ..+...+++++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 93 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~---VvlK 168 (487)
T PRK09457 93 EAATEVTAMINKIAISIQAYHERTGEKRSE-MADGAAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNT---VVFK 168 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceecc-CCCceeEEEEeccEEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 455689999999999998887766543322 223456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|+++..++++++++|++.+.
T Consensus 169 Ps~~tp~t~~~l~~l~~~aGlP~gv 193 (487)
T PRK09457 169 PSELTPWVAELTVKLWQQAGLPAGV 193 (487)
T ss_pred CCCCCcHHHHHHHHHHHHhCcCcCe
Confidence 9999999999999999999998764
No 41
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=99.91 E-value=1.2e-23 Score=161.75 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCC----CCCCceeeEeeeec-eeEEEEcccchhHHHHHHHHHHHHhcCCCCC
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPS----ERPGHVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLG 76 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~ 76 (109)
+++.|+..+++.++||++.+++..++..+. ...+...++.++|+ |||++|+|||||+.+..+++++||++||+
T Consensus 92 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~-- 169 (472)
T TIGR03250 92 DSLYEVGRVADVLTFAAAEALRDDGQIFSCDLTPHGKARKVFTQREPLLGVISAITPFNHPMNQVAHKIAPAIATNNR-- 169 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEcCCCCEEEEEcCCcHHHHHHHHHHHHHHHcCCE--
Confidence 456799999999999999988776543211 11133567899998 99999999999999999999999999999
Q ss_pred cEEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 77 QVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 77 ~vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+||||.+|+++..++++++++|.+.+.
T Consensus 170 -VvlKps~~~p~~~~~l~~~~~~aGlP~gv 198 (472)
T TIGR03250 170 -MVVKPSEKTPLSALYLADILYEAGLPPQM 198 (472)
T ss_pred -EEEECCCcchHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999998775
No 42
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=99.91 E-value=1.3e-23 Score=160.38 Aligned_cols=102 Identities=27% Similarity=0.345 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++++++++++..+...+....+...+++++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 77 ~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~---VilK 153 (451)
T cd07150 77 KAWFETTFTPELLRAAAGECRRVRGETLPSDSPGTVSMSVRRPLGVVAGITPFNYPLILATKKVAFALAAGNT---VVLK 153 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecccEEEEECCCccHHHHHHHHHHHHHhcCCe---EEEE
Confidence 3556899999999999999988766544332234456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|.++..++++++++|.+.+.
T Consensus 154 ps~~~p~t~~~l~~~~~~ag~P~g~ 178 (451)
T cd07150 154 PSEETPVIGLKIAEIMEEAGLPKGV 178 (451)
T ss_pred CCccCcHHHHHHHHHHHHhCCCcCc
Confidence 9999999999999999999999875
No 43
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=99.91 E-value=1.3e-23 Score=162.07 Aligned_cols=101 Identities=24% Similarity=0.378 Sum_probs=87.8
Q ss_pred chH-HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGI-GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~-~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
+++ .|+..+++.++|+++.++...++..+.. .+...+++++|+|||++|+|||||+.+.++++++||++||+ ||+
T Consensus 100 ~a~~~ev~~~~~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~PlGVv~~I~p~N~P~~~~~~~~~~ALaaGN~---Vv~ 175 (488)
T PRK13252 100 ETSVVDIVTGADVLEYYAGLAPALEGEQIPLR-GGSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNA---MIF 175 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceeccC-CCceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHhcCCe---EEE
Confidence 344 3888899999999999887766543332 23456889999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||+.+|+++..++++++++|.+.+.
T Consensus 176 Kps~~~p~t~~~l~~~~~~aglP~g~ 201 (488)
T PRK13252 176 KPSEVTPLTALKLAEIYTEAGLPDGV 201 (488)
T ss_pred eCCccCcHHHHHHHHHHHHcCcCccc
Confidence 99999999999999999999998764
No 44
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=99.91 E-value=1.5e-23 Score=160.35 Aligned_cols=102 Identities=24% Similarity=0.338 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCC----CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSER----PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++.|+..+++.++++++.++.+.++..+.+. .+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 77 ~a~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~--- 153 (456)
T cd07145 77 QSRVEVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTVREPIGVVGAITPFNFPANLFAHKIAPAIAVGNS--- 153 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCccccccCCceeEEEEecceeEEEECCCChHHHHHHHHHHHHHHcCCE---
Confidence 45679999999999999988766654322211 13345788999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..++++++++|.+.+.
T Consensus 154 VV~Kps~~~p~~~~~l~~~~~~ag~p~g~ 182 (456)
T cd07145 154 VVVKPSSNTPLTAIELAKILEEAGLPPGV 182 (456)
T ss_pred EEEECCccchHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999998775
No 45
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=99.90 E-value=1.4e-23 Score=161.85 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecC
Q psy3661 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV 83 (109)
Q Consensus 4 ~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKps 83 (109)
..|+..+++.++++++++++..++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||
T Consensus 105 ~~ev~~~~~~~~~~a~~a~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~---VvlKps 180 (481)
T cd07143 105 RVDVQASADTFRYYGGWADKIHGQVIETD-IKKLTYTRHEPIGVCGQIIPWNFPLLMCAWKIAPALAAGNT---IVLKPS 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCC-CCceEEEEEecceeEEEECCCcChHHHHHHHHHHHHHcCCE---EEEeCC
Confidence 34899999999999999987766543322 23456789999999999999999999999999999999999 999999
Q ss_pred CCchHHHHHHHHHHHhcCcccCC
Q psy3661 84 EVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 84 e~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+.+|+++..+++++.++|.+.+.
T Consensus 181 ~~~p~~~~~l~~~l~~aGlP~g~ 203 (481)
T cd07143 181 ELTPLSALYMTKLIPEAGFPPGV 203 (481)
T ss_pred CCCcHHHHHHHHHHHhcCcCccc
Confidence 99999999999999999998775
No 46
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=99.90 E-value=1.6e-23 Score=161.10 Aligned_cols=98 Identities=28% Similarity=0.410 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++||++.++.+.+...+....+...++.|+|+|||++|+|||||+.+.+++++|||++||+ ||+||||
T Consensus 98 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~---VV~KPs~ 174 (472)
T TIGR03374 98 DEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNC---VVLKPSE 174 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCccCCCceEEEEEecceEEEEECCCCchHHHHHHHHHHHHhcCCE---EEecCCC
Confidence 4889999999999998877665422211123456889999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|+++..+++++.++ ++.+.
T Consensus 175 ~tp~~~~~l~~l~~~~-lP~gv 195 (472)
T TIGR03374 175 ITPLTALKLAELAKDI-FPAGV 195 (472)
T ss_pred CCCHHHHHHHHHHHHh-CCcCe
Confidence 9999999999999874 76653
No 47
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=99.90 E-value=1.9e-23 Score=160.83 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|++..++...++..+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 94 ~a~~ev~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~---VilK 170 (477)
T TIGR01722 94 DALGDVARGLEVVEHACGVNSLLKGETSTQVATRVDVYSIRQPLGVCAGITPFNFPAMIPLWMFPIAIACGNT---FVLK 170 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEcccceEEEEccCChHHHHHHHHHHHHHhcCCE---EEee
Confidence 4567899999999999998887766543322223456778999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..+++++.++|+|.+.
T Consensus 171 ps~~~p~~~~~l~~~l~~aglP~g~ 195 (477)
T TIGR01722 171 PSEKVPSAAVKLAELFSEAGAPDGV 195 (477)
T ss_pred CcccChHHHHHHHHHHHHhCcCCCe
Confidence 9999999999999999999999775
No 48
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=99.90 E-value=2e-23 Score=160.13 Aligned_cols=99 Identities=21% Similarity=0.388 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecC
Q psy3661 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV 83 (109)
Q Consensus 4 ~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKps 83 (109)
..|+..+++.++|+++.+++..++..+... ....++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||
T Consensus 94 ~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~-~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~---VvlKps 169 (467)
T TIGR01804 94 VADMDDIADVFEFFAGLADKDGGEIIPLPI-PSFSYTIREPLGVCVGIGAWNYPLQIASWKIAPALAAGNA---MVFKPS 169 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCC-CceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHhcCCE---EEeeCC
Confidence 458899999999999998886655433221 2356789999999999999999999999999999999999 999999
Q ss_pred CCchHHHHHHHHHHHhcCcccCC
Q psy3661 84 EVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 84 e~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+.+|+++..++++|+++|.+.+.
T Consensus 170 ~~tp~~~~~l~~~~~~aglP~gv 192 (467)
T TIGR01804 170 EITPLTALKVAELMEEAGLPDGV 192 (467)
T ss_pred ccCcHHHHHHHHHHHHcCcCcCc
Confidence 99999999999999999999875
No 49
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=99.90 E-value=2.4e-23 Score=159.69 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++++++++++..+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 91 ~a~~ev~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~---VVlK 167 (468)
T cd07088 91 LARVEVEFTADYIDYMAEWARRIEGEIIPSDRPNENIFIFKVPIGVVAGILPWNFPFFLIARKLAPALVTGNT---IVIK 167 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccCccccceeEEEEecceeEEEEccCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4567899999999999999888766543322223456788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|.++..++++|+++|++.+.
T Consensus 168 ps~~~p~~~~~l~~~~~~aglP~gv 192 (468)
T cd07088 168 PSEETPLNALEFAELVDEAGLPAGV 192 (468)
T ss_pred CCCcchHHHHHHHHHHHHcCcCccc
Confidence 9999999999999999999999875
No 50
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=99.90 E-value=1.5e-23 Score=161.62 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhh-cCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTY-SGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
+++.|+..+++.++|+++.+++. .++..+.. ....++.++|+|||++|+|||||+.+.++++++||++||+ ||+
T Consensus 94 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~---VIl 168 (488)
T TIGR02299 94 QTRQQVIRAAENFRFFADKCEEAMDGRTYPVD--THLNYTVRVPVGPVGLITPWNAPFMLSTWKIAPALAFGNT---VVL 168 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcCCccccCC--CceEEEEEEecceEEEECCCccHHHHHHHHHHHHHHcCCE---EEE
Confidence 45568999999999999988743 33333322 3356788999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
|||+.+|+++..++++++++|++.++-
T Consensus 169 Kps~~~p~~~~~l~~~~~~aGlP~gvv 195 (488)
T TIGR02299 169 KPAEWSPLTAARLAEIAKEAGLPDGVF 195 (488)
T ss_pred ECchhchHHHHHHHHHHHHcCcChhhe
Confidence 999999999999999999999998864
No 51
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2e-23 Score=166.35 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhc--------CCccCCCCCC-ceeeEeeeec-eeEEEEcccchhHHHHHHHHHHHHhc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYS--------GSILPSERPG-HVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPG 71 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~-~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~pAL~a 71 (109)
+++.|+..+++.++||++++++.. ++..+....+ ...++.++|+ |||++|+|||||+.+.+++++|||++
T Consensus 96 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~GVv~~I~PwNfP~~~~~~~i~pALaa 175 (675)
T PRK11563 96 DSWIDIEGGIGTLFTYASKGRRELPNDTVLVEGEVEPLSKGGTFAGRHILTPLEGVAVHINAFNFPVWGMLEKLAPAFLA 175 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCCccccccCCCcccceEEEeecCceEEEECCCchHHHHHHHHHHHHHHc
Confidence 466799999999999999987653 2222221112 2246889997 99999999999999999999999999
Q ss_pred CCCCCcEEEecCCCchHHHHHHHHHHHhcC-cccC
Q psy3661 72 WQVLGQVALVGVEVVPRWFQTLAKTLKNQN-QIQK 105 (109)
Q Consensus 72 GNt~~~vvlKpse~tp~~~~~l~~~~~~ag-~~~~ 105 (109)
||+ ||+||||.+|+++..+++++.++| .|.|
T Consensus 176 GN~---VV~KPse~tp~~a~~l~~~~~eaG~~P~g 207 (675)
T PRK11563 176 GVP---AIVKPATATAYLTEAVVRLIVESGLLPEG 207 (675)
T ss_pred CCe---EEEECCCCCcHHHHHHHHHHHHcCCCCCC
Confidence 999 999999999999999999999999 7765
No 52
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=99.90 E-value=2.3e-23 Score=159.39 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCC----CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSE----RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++.|+..+++.++||++.+.+..++..+.. ..+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 74 ~a~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~--- 150 (451)
T cd07146 74 DTRYEVGRAADVLRFAAAEALRDDGESFSCDLTANGKARKIFTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNR--- 150 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEEEEeccceEEEEccCChHHHHHHHHHHHHHHcCCE---
Confidence 4567999999999999998877655433221 123456789999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..+.++++++|++.++
T Consensus 151 VilKps~~~p~~~~~l~~~l~~aglP~g~ 179 (451)
T cd07146 151 IVLKPSEKTPLSAIYLADLLYEAGLPPDM 179 (451)
T ss_pred EEEECCCCchHHHHHHHHHHHHcCcCccc
Confidence 99999999999999999999999999775
No 53
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=99.90 E-value=2.7e-23 Score=159.81 Aligned_cols=102 Identities=32% Similarity=0.505 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|+++.+++..++..+....+...+++++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 93 ~~~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VvlK 169 (478)
T cd07131 93 EGRGDVQEAIDMAQYAAGEGRRLFGETVPSELPNKDAMTRRQPIGVVALITPWNFPVAIPSWKIFPALVCGNT---VVFK 169 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCceEEEEeeceeEEEEECCcCcHHHHHHHHHHHHHHcCCE---EEEE
Confidence 3456889999999999999888766543322223456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++|.++|.+.+.
T Consensus 170 ps~~~p~~~~~l~~~l~~aGlP~gv 194 (478)
T cd07131 170 PAEDTPACALKLVELFAEAGLPPGV 194 (478)
T ss_pred CCCcCcHHHHHHHHHHHhcCcCCCc
Confidence 9999999999999999999998765
No 54
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=99.90 E-value=2.5e-23 Score=160.83 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++||++.++++.++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 119 ~ev~~~~~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~---VvlKps~ 194 (494)
T PRK09847 119 DDIPGAARAIRWYAEAIDKVYGEVATTS-SHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNS---VILKPSE 194 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCC-CCceeEEEecceeEEEEECCCccHHHHHHHHHHHHHHcCCE---EEEeCCC
Confidence 4899999999999999988876644332 23356789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|.++..++++++++|.|.+.
T Consensus 195 ~~p~~~~~l~~~~~~aGlP~g~ 216 (494)
T PRK09847 195 KSPLSAIRLAGLAKEAGLPDGV 216 (494)
T ss_pred CChHHHHHHHHHHHHcCcCcCc
Confidence 9999999999999999998764
No 55
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=99.90 E-value=2.8e-23 Score=160.01 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++++++++++..++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 107 ~ev~~~~~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VVlKps~ 182 (481)
T cd07141 107 VDLPGAIKVLRYYAGWADKIHGKTIPMD-GDFFTYTRHEPVGVCGQIIPWNFPLLMAAWKLAPALACGNT---VVLKPAE 182 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceecCC-CCceEEEEEeceeEEEEEccChhHHHHHHHHHHHHHHcCCE---EEEeCCC
Confidence 4888999999999999988877544332 23356789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
.+|+++..++++++++|.+.++-
T Consensus 183 ~~p~~~~~l~~~l~~aGlP~gvv 205 (481)
T cd07141 183 QTPLTALYLASLIKEAGFPPGVV 205 (481)
T ss_pred CCcHHHHHHHHHHHHcCcCccce
Confidence 99999999999999999998763
No 56
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=99.90 E-value=3.2e-23 Score=159.67 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCC---CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSE---RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.+++|++.+++..++..+.. ..+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 97 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~Pl~~~~~~~~~ALaaGN~---vvlK 173 (481)
T TIGR03216 97 LDIPRGAANFRVFADVVKNAPTECFEMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMTWKVGPALACGNT---VVVK 173 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCceeEEEEeccceEEEECCCCcHHHHHHHHHHHHHHcCCE---EEEE
Confidence 3888899999999999887655432211 112345788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|+++..+++++.++|+|.++-
T Consensus 174 Ps~~tp~t~~~l~~l~~~aglP~g~~ 199 (481)
T TIGR03216 174 PSEETPGTATLLGEVMNAVGVPKGVY 199 (481)
T ss_pred CCccchHHHHHHHHHHHHcCCCcCce
Confidence 99999999999999999999998763
No 57
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=99.90 E-value=3.6e-23 Score=159.11 Aligned_cols=98 Identities=27% Similarity=0.402 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++++++++++..++..+.. .+...++.++|+|||++|+|||||+.+.+++++|||++||+ ||+|||+
T Consensus 103 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~AL~aGN~---VvlKps~ 178 (476)
T cd07091 103 GDVALSIKCLRYYAGWADKIQGKTIPID-GNFLAYTRREPIGVCGQIIPWNFPLLMLAWKLAPALAAGNT---VVLKPAE 178 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCC-CCceEEEEEeceeEEEEECCCcCHHHHHHHHHHHHHHcCCE---EEEeCCC
Confidence 4899999999999999887766543332 34456889999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|.++..+++++.++|.+.+.
T Consensus 179 ~~p~~~~~l~~~~~~aglP~g~ 200 (476)
T cd07091 179 QTPLSALYLAELIKEAGFPPGV 200 (476)
T ss_pred CChHHHHHHHHHHHHcCcCCCc
Confidence 9999999999999999998763
No 58
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=99.90 E-value=3.5e-23 Score=158.82 Aligned_cols=98 Identities=24% Similarity=0.333 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++|+++.+++..+...+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 86 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GvV~~i~p~N~P~~~~~~~~~~ALaaGN~---Vv~Kps~ 161 (462)
T cd07112 86 VDVPSAANTFRWYAEAIDKVYGEVAPTG-PDALALITREPLGVVGAVVPWNFPLLMAAWKIAPALAAGNS---VVLKPAE 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceecCC-CCeEEEEEEeeeeeEEEECCCchHHHHHHHHHHHHHHcCCe---eeeeCCC
Confidence 3889999999999999988766533322 23456789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|.++..+++++.++|.+.+.
T Consensus 162 ~~p~~~~~l~~~~~~aGlP~g~ 183 (462)
T cd07112 162 QSPLTALRLAELALEAGLPAGV 183 (462)
T ss_pred CCCHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999998763
No 59
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=99.90 E-value=3.4e-23 Score=159.34 Aligned_cols=102 Identities=54% Similarity=0.897 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++|+++.++.+.+...+....+...++.++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 90 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~---VvlK 166 (474)
T cd07130 90 EGLGEVQEMIDICDFAVGLSRQLYGLTIPSERPGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIALVCGNV---VVWK 166 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcCccccCCCCCceEEEEEecceeEEEEccCCCHHHHHHHHhhHHHHcCCe---EEee
Confidence 4557899999999999998776655433322234456788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHH----HhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTL----KNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~----~~ag~~~~~ 106 (109)
|||.+|+++..+++++ +++|++.++
T Consensus 167 ps~~~p~~~~~l~~l~~~~~~~aglP~gv 195 (474)
T cd07130 167 PSPTTPLTAIAVTKIVARVLEKNGLPGAI 195 (474)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999888765 699999875
No 60
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=99.90 E-value=3.1e-23 Score=159.66 Aligned_cols=100 Identities=28% Similarity=0.381 Sum_probs=85.3
Q ss_pred chH-HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGI-GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~-~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
++. .|+..+++.++||++.+++..+...+.. .+...++.++|+|||++|+|||||+.+.+++++|||++||+ ||+
T Consensus 94 ~a~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~---VV~ 169 (479)
T cd07116 94 ETLAADIPLAIDHFRYFAGCIRAQEGSISEID-ENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLAPALAAGNC---VVL 169 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHcCCeeecCC-CCceEEEEEeccceEEEECCCchHHHHHHHHHHHHHHcCCE---EEE
Confidence 344 4899999999999998877655432222 23456789999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||||.+|++++.++++++++ +|.|+
T Consensus 170 KPs~~tp~~~~~l~~l~~~a-lP~gv 194 (479)
T cd07116 170 KPAEQTPASILVLMELIGDL-LPPGV 194 (479)
T ss_pred ECCCCChHHHHHHHHHHHHH-CCcCc
Confidence 99999999999999999987 77665
No 61
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=99.90 E-value=3.6e-23 Score=159.44 Aligned_cols=99 Identities=25% Similarity=0.467 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecC
Q psy3661 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV 83 (109)
Q Consensus 4 ~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKps 83 (109)
..|+..+++.++++++++++..++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||
T Consensus 105 ~~ev~~~~~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~---VV~Kps 180 (484)
T cd07144 105 LGDLDEIIAVIRYYAGWADKIQGKTIPTS-PNKLAYTLHEPYGVCGQIIPWNYPLAMAAWKLAPALAAGNT---VVIKPA 180 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceecCC-CCceEEEEEecceEEEEECcCCCHHHHHHHHHHHHHHcCCE---EEEECC
Confidence 45899999999999999988866543322 23456889999999999999999999999999999999999 999999
Q ss_pred CCchHHHHHHHHHHHhcCcccCC
Q psy3661 84 EVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 84 e~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|.+|+++..+.++++++|.+.+.
T Consensus 181 ~~~p~~~~~l~~~~~~aglP~gv 203 (484)
T cd07144 181 ENTPLSLLYFANLVKEAGFPPGV 203 (484)
T ss_pred ccchHHHHHHHHHHHHhCcCCCc
Confidence 99999999999999999998663
No 62
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=99.90 E-value=3.2e-23 Score=159.59 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=85.2
Q ss_pred chH-HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGI-GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~-~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
+++ .|+..+++.++||++.+++..++..+.. .+...+++++|+|||++|+|||||+.+.++++++||++||+ ||+
T Consensus 94 ~a~~~ev~~~i~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~Pl~~~~~~i~~AL~aGN~---Vvl 169 (475)
T cd07117 94 ETRAVDIPLAADHFRYFAGVIRAEEGSANMID-EDTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAPALAAGNT---VVI 169 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccC-CCceeEEEEeecceEEEECCCccHHHHHHHHHHHHHHcCCE---EEE
Confidence 344 3899999999999998877665433322 23356889999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||+.+|+++..++++++++ ++.++
T Consensus 170 KPs~~~p~~~~~l~~~~~~~-lP~g~ 194 (475)
T cd07117 170 KPSSTTSLSLLELAKIIQDV-LPKGV 194 (475)
T ss_pred ECCccCcHHHHHHHHHHHHh-CCcCc
Confidence 99999999999999999884 77665
No 63
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.90 E-value=2.9e-23 Score=170.96 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCC-CCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPS-ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
|+..|+.+++++++||+..++++.+..... ...+....+.++|+|||++|+|||||+.+..+++++||++||+ ||+
T Consensus 641 ~a~~EV~eaid~lr~ya~~a~~~~~~~~~l~g~~ge~n~~~~~P~GVv~~IsPwNfPlai~~~~i~aALaaGNt---VIl 717 (1038)
T PRK11904 641 DAIAEVREAVDFCRYYAAQARRLFGAPEKLPGPTGESNELRLHGRGVFVCISPWNFPLAIFLGQVAAALAAGNT---VIA 717 (1038)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcccCCCCCceeEEEEecceEEEEECCCccHHHHHHHHHHHHHHcCCE---EEe
Confidence 456789999999999999998876542221 1234567889999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||||.||+++..++++++++|+|.+.
T Consensus 718 KPse~tpl~a~~l~~ll~eAGlP~gv 743 (1038)
T PRK11904 718 KPAEQTPLIAAEAVKLLHEAGIPKDV 743 (1038)
T ss_pred eCCCcCHHHHHHHHHHHHHhCcCcce
Confidence 99999999999999999999998764
No 64
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=99.90 E-value=3.5e-23 Score=160.97 Aligned_cols=101 Identities=21% Similarity=0.112 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCC--------CCceeeEeeee-ceeEEEEcccchhHHHHHHHHHHHHhcC
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSER--------PGHVLLENWNP-LGVVGIISAFNFPVAVYGWNAAIALPGW 72 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~P-~GVv~~I~PwN~P~~~~~~k~~pAL~aG 72 (109)
+++.|+..+++.++||+++++++.+....... ......+.++| +|||++|+|||||+.+..+++++||++|
T Consensus 97 ~a~~ev~~~i~~l~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~pwN~P~~~~~~~~~~ALaaG 176 (521)
T PRK11903 97 DSAVDIDGGIFTLGYYAKLGAALGDARLLRDGEAVQLGKDPAFQGQHVLVPTRGVALFINAFNFPAWGLWEKAAPALLAG 176 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccccccccccceEEEecCcceEEEECCcchHHHHHHHHHHHHHHcC
Confidence 46779999999999999998876543211100 12234678899 6999999999999999999999999999
Q ss_pred CCCCcEEEecCCCchHHHHHHHHHHHhcC-cccC
Q psy3661 73 QVLGQVALVGVEVVPRWFQTLAKTLKNQN-QIQK 105 (109)
Q Consensus 73 Nt~~~vvlKpse~tp~~~~~l~~~~~~ag-~~~~ 105 (109)
|+ ||+||||.||+++..+++++.++| ++.+
T Consensus 177 N~---VV~KPs~~tp~~~~~l~~~~~~ag~lP~g 207 (521)
T PRK11903 177 VP---VIVKPATATAWLTQRMVKDVVAAGILPAG 207 (521)
T ss_pred Ce---EEEEcCCcChHHHHHHHHHHHHhCCCCcC
Confidence 99 999999999999999999999999 7765
No 65
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=99.90 E-value=4.2e-23 Score=158.22 Aligned_cols=100 Identities=20% Similarity=0.173 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCcc-CCC---CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSIL-PSE---RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
.|+..+++.++||++.++++.++.. +.. ..+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+
T Consensus 80 ~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~P~~~~~~~~~~AL~aGN~---vvl 156 (459)
T cd07089 80 MQVDGPIGHLRYFADLADSFPWEFDLPVPALRGGPGRRVVRREPVGVVAAITPWNFPFFLNLAKLAPALAAGNT---VVL 156 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceecCcccccCCCceeEEEEeeccEEEEEcCCchHHHHHHHHHHHHHHcCCE---EEE
Confidence 4889999999999999988765542 221 124466899999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
|||+.+|.++..++++|+++|++.++-
T Consensus 157 Kps~~~p~~~~~l~~~~~~aglP~g~~ 183 (459)
T cd07089 157 KPAPDTPLSALLLGEIIAETDLPAGVV 183 (459)
T ss_pred ECCCCChHHHHHHHHHHHHcCCCccce
Confidence 999999999999999999999998763
No 66
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=99.90 E-value=5e-23 Score=157.25 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|+++.+++..+........+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 74 ~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~l~~ALaaGN~---VVlK 150 (452)
T cd07102 74 QAGGEIRGMLERARYMISIAEEALADIRVPEKDGFERYIRREPLGVVLIIAPWNYPYLTAVNAVIPALLAGNA---VILK 150 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCeeEEEEEEeccEEEEEcCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 3556889999999999999887765532222234456789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++++++|++.++
T Consensus 151 ps~~~~~~~~~l~~~l~~aGlP~g~ 175 (452)
T cd07102 151 HSPQTPLCGERFAAAFAEAGLPEGV 175 (452)
T ss_pred CCCCCcHHHHHHHHHHHhcCCCcCc
Confidence 9999999999999999999999876
No 67
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=99.90 E-value=5.1e-23 Score=157.51 Aligned_cols=102 Identities=20% Similarity=0.115 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccC-CC-CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILP-SE-RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
++..|+..+++.++|++..+++..+.... .. ......++.++|+|||++|+|||||+.+.++++++||++||+ ||
T Consensus 74 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~---vv 150 (454)
T cd07101 74 HAFEEVLDVAIVARYYARRAERLLKPRRRRGAIPVLTRTTVNRRPKGVVGVISPWNYPLTLAVSDAIPALLAGNA---VV 150 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCceEEEEEEeccEEEEECCCccHHHHHHHHHHHHHHcCCE---EE
Confidence 35568899999999999998887654322 11 112356889999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+|||+.+|+++..++++++++|.+.++
T Consensus 151 lKps~~~p~~~~~l~~~~~~aglP~gv 177 (454)
T cd07101 151 LKPDSQTALTALWAVELLIEAGLPRDL 177 (454)
T ss_pred EECCccchHHHHHHHHHHHHcCcCCCc
Confidence 999999999999999999999999875
No 68
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=99.90 E-value=4.3e-23 Score=157.42 Aligned_cols=100 Identities=33% Similarity=0.356 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 3 a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
+..|+..+++.++++++.+++..+...+.. .+...+++++|+|||++|+|||||+.+.++++++||++||+ ||+||
T Consensus 70 a~~ev~~~i~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~---VvlKp 145 (443)
T cd07152 70 AGFEVGAAIGELHEAAGLPTQPQGEILPSA-PGRLSLARRVPLGVVGVISPFNFPLILAMRSVAPALALGNA---VVLKP 145 (443)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhCCcccccc-CCceeEEEEecceEEEEECCCCcHHHHHHHHHHHHHHcCCE---EEEEC
Confidence 456899999999999988776554433322 34456889999999999999999999999999999999999 99999
Q ss_pred CCCchHHH-HHHHHHHHhcCcccCC
Q psy3661 83 VEVVPRWF-QTLAKTLKNQNQIQKC 106 (109)
Q Consensus 83 se~tp~~~-~~l~~~~~~ag~~~~~ 106 (109)
|+.+|.++ ..++++|+++|.+.+.
T Consensus 146 s~~~p~~~~~~l~~~~~~ag~P~gv 170 (443)
T cd07152 146 DPRTPVSGGVVIARLFEEAGLPAGV 170 (443)
T ss_pred CcccchhHHHHHHHHHHHhCcCcCc
Confidence 99999996 7999999999998764
No 69
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=99.90 E-value=4e-23 Score=161.00 Aligned_cols=101 Identities=22% Similarity=0.180 Sum_probs=86.1
Q ss_pred chHHH-HHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeec-eeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGE-VQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~e-v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
+++.| +..+++.++||+++++++.++.......+...++.++|+ |||++|+|||||+.+..+++++|| +||+ ||
T Consensus 126 ~a~~e~v~~~i~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~~~~~~~a~AL-aGN~---VV 201 (533)
T TIGR01236 126 QAEIDAVAELIDFFRFNVKYARELYEQQPSESAPGEWNRTDYRPLEGFVYAISPFNFTAIAGNLPGAPAL-MGNT---VI 201 (533)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecCCCEEEEEeCCchHHHHHHHHHHHHH-hCCe---EE
Confidence 34454 888999999999999887665331112244578899999 999999999999999999999999 8999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+||||.+|+++..++++|+++|+|.+.
T Consensus 202 lKPs~~tp~~~~~l~~~~~~aGlP~gv 228 (533)
T TIGR01236 202 WKPSITATLSNYLTMRILEEAGLPPGV 228 (533)
T ss_pred EECCCcCCHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999998764
No 70
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=99.90 E-value=4.9e-23 Score=158.80 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++|++...++..++.... ..+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 91 ~a~~ev~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~---VVlK 166 (484)
T TIGR03240 91 ETRTEVASMIGKVAISIKAYHERTGESENP-MPDGRAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNT---VVFK 166 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccC-CCCceeEEEEecccEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 355688999999999998877765543221 123346788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|+++..++++++++|.+.+.
T Consensus 167 Ps~~tp~t~~~l~~~~~~aGlP~gv 191 (484)
T TIGR03240 167 PSELTPWVAEETVKLWEKAGLPAGV 191 (484)
T ss_pred CCccccHHHHHHHHHHHHhCcCccc
Confidence 9999999999999999999998775
No 71
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=99.90 E-value=6e-23 Score=159.68 Aligned_cols=102 Identities=21% Similarity=0.142 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCC-C-CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPS-E-RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
++..|+..+++.++||++.+++..+..... . ......++.++|+|||++|+|||||+.+.++++++||++||+ ||
T Consensus 110 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~Pl~~~~~~~~~ALaaGN~---VI 186 (524)
T PRK09407 110 HAFEEVLDVALTARYYARRAPKLLAPRRRAGALPVLTKTTELRQPKGVVGVISPWNYPLTLAVSDAIPALLAGNA---VV 186 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccccccCCCCceEEEEEecceEEEEEeCCCChHHHHHHHHHHHHHcCCE---EE
Confidence 355688899999999999998876643221 1 112456889999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+|||+.+|+++..++++++++|.+.++
T Consensus 187 lKPs~~tp~~~~~l~~ll~eaGlP~gv 213 (524)
T PRK09407 187 LKPDSQTPLTALAAVELLYEAGLPRDL 213 (524)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999999999875
No 72
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=99.90 E-value=6.6e-23 Score=156.93 Aligned_cols=102 Identities=24% Similarity=0.309 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.+++|+..+++..+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 77 ~~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~---Vilk 153 (457)
T cd07114 77 ETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKGDYLNFTRREPLGVVAAITPWNSPLLLLAKKLAPALAAGNT---VVLK 153 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHHHhcCCe---EEeE
Confidence 4567899999999999998877755443332234456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++|+++|.+.+.
T Consensus 154 ps~~~p~~~~~l~~~l~~aglP~~v 178 (457)
T cd07114 154 PSEHTPASTLELAKLAEEAGFPPGV 178 (457)
T ss_pred CCccchHHHHHHHHHHHHcCcCCCc
Confidence 9999999999999999999998764
No 73
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=99.90 E-value=7e-23 Score=157.27 Aligned_cols=99 Identities=20% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.+++|++.++++.+........+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 98 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~i~~ALaaGN~---VvlKps~ 174 (471)
T cd07139 98 AQGPGPAALLRYYAALARDFPFEERRPGSGGGHVLVRREPVGVVAAIVPWNAPLFLAALKIAPALAAGCT---VVLKPSP 174 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCceEEEEEEeccEEEEEcCCchHHHHHHHHHHHHHhcCCE---EEEECCC
Confidence 3888999999999999887764332211123456889999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|+++..+.++++++|.+.++
T Consensus 175 ~~p~~~~~l~~~~~~aglP~gv 196 (471)
T cd07139 175 ETPLDAYLLAEAAEEAGLPPGV 196 (471)
T ss_pred cCCHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999875
No 74
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=99.90 E-value=6.8e-23 Score=156.62 Aligned_cols=102 Identities=25% Similarity=0.249 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCC----CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSER----PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++.|+..+++.+++|++.++++.++..+.+. .+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 77 ~a~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~--- 153 (453)
T cd07094 77 DARVEVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTIREPVGVVLAITPFNFPLNLVAHKLAPAIATGCP--- 153 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCceEEEEEeccceEEEECCCccHHHHHHHHHHHHHHcCCE---
Confidence 35568899999999999998887665433321 23456788999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..+++++.++|.+.++
T Consensus 154 VI~Kps~~~p~~~~~l~~~l~~ag~P~g~ 182 (453)
T cd07094 154 VVLKPASKTPLSALELAKILVEAGVPEGV 182 (453)
T ss_pred EEEECCCcchHHHHHHHHHHHHcCCCcCc
Confidence 99999999999999999999999988775
No 75
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=99.89 E-value=6.3e-23 Score=159.36 Aligned_cols=102 Identities=24% Similarity=0.251 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++++++.+++..+........+...+++++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 125 ~a~~ev~~~i~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~GVV~~I~p~N~P~~~~~~~i~~ALaaGN~---VVlK 201 (518)
T cd07125 125 DADAEVREAIDFCRYYAAQARELFSDPELPGPTGELNGLELHGRGVFVCISPWNFPLAIFTGQIAAALAAGNT---VIAK 201 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeEEEEecccEEEEECCcchHHHHHHHHHHHHHHcCCE---EEEe
Confidence 4556889999999999999988765432112224456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..+++++.++|.+.++
T Consensus 202 ps~~tp~~~~~l~~ll~eaGlP~gv 226 (518)
T cd07125 202 PAEQTPLIAARAVELLHEAGVPRDV 226 (518)
T ss_pred CCCcCcHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999875
No 76
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=99.89 E-value=7.8e-23 Score=156.08 Aligned_cols=103 Identities=27% Similarity=0.322 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++|++..+++..+...+....+...+..++|+|||++|+|||||+...++++++||++||+ ||+|
T Consensus 75 ~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~---VIlK 151 (451)
T cd07103 75 EARGEVDYAASFLEWFAEEARRIYGRTIPSPAPGKRILVIKQPVGVVAAITPWNFPAAMITRKIAPALAAGCT---VVLK 151 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCcceEEEEeeceEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4556899999999999998888766544332234466889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|.++..++++|+++|.+.++-
T Consensus 152 ps~~~~~~~~~l~~~l~~aglP~g~v 177 (451)
T cd07103 152 PAEETPLSALALAELAEEAGLPAGVL 177 (451)
T ss_pred CCccCcHHHHHHHHHHHHcCCCcccE
Confidence 99999999999999999999998763
No 77
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=99.89 E-value=7.2e-23 Score=156.57 Aligned_cols=98 Identities=24% Similarity=0.377 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++++++++++..+...+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 79 ~ev~~~i~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~---Vi~Kps~ 154 (453)
T cd07115 79 LDVPRAADTFRYYAGWADKIEGEVIPVR-GPFLNYTVREPVGVVGAIVPWNFPLMFAAWKVAPALAAGNT---VVLKPAE 154 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceecCC-CCceEEEEecceeEEEEEcCCCCHHHHHHHHHHHHHhcCCE---EEEECCC
Confidence 4888999999999999888766543332 34456899999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|+++..+++++.++|.+.++
T Consensus 155 ~~p~~~~~l~~~~~~aGlP~~~ 176 (453)
T cd07115 155 LTPLSALRIAELMAEAGFPAGV 176 (453)
T ss_pred CCcHHHHHHHHHHHhcCcCchh
Confidence 9999999999999999998775
No 78
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=99.89 E-value=9.9e-23 Score=155.68 Aligned_cols=102 Identities=25% Similarity=0.291 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCC----CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSE----RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++.|+..+++.++++++.+.+..++....+ ..+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 77 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~--- 153 (452)
T cd07147 77 DARGEVARAIDTFRIAAEEATRIYGEVLPLDISARGEGRQGLVRRFPIGPVSAITPFNFPLNLVAHKVAPAIAAGCP--- 153 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCCceeEEEEeceeEEEEEcCCCcHHHHHHHHHHHHHHcCCE---
Confidence 4567899999999999998877654432211 123456788999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|.++..++++++++|.+.+.
T Consensus 154 VIlKps~~~p~~~~~l~~~l~~ag~P~g~ 182 (452)
T cd07147 154 FVLKPASRTPLSALILGEVLAETGLPKGA 182 (452)
T ss_pred EEEECCCCCcHHHHHHHHHHHHcCCCcCc
Confidence 99999999999999999999999998875
No 79
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=99.89 E-value=3.5e-23 Score=158.60 Aligned_cols=102 Identities=33% Similarity=0.454 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++||+++++++.++..+. ..+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 85 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~ALaaGN~---VVlk 160 (462)
T PF00171_consen 85 EARGEVDRAIDFLRYYADAARKLAGEVLPS-DPGSRNYTRREPLGVVLIITPWNFPLYLAVWKIAPALAAGNT---VVLK 160 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTEEEEEE-STTEEEEEEEEE-SEEEEEE-SSSCTHHHHHHHHHHHHTT-E---EEEE
T ss_pred cccchhhhhhhhhhhhhhcccceehhhccc-ccccccccccccccceeecccccccccccccchhhhhccccc---ceee
Confidence 466799999999999999999976654444 256788999999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+.+|.++..++++++++|.+.++-
T Consensus 161 ps~~~~~~~~~l~~~~~~AglP~gvv 186 (462)
T PF00171_consen 161 PSEQAPLTALLLAELLEEAGLPPGVV 186 (462)
T ss_dssp EBTTSHHHHHHHHHHHHHHTSTTTSE
T ss_pred eccccccccccchhhccccccccccc
Confidence 99999999999999999999998863
No 80
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=99.89 E-value=9.9e-23 Score=158.44 Aligned_cols=96 Identities=22% Similarity=0.133 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeec-eeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 6 ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
|+..+++.++||+++++++.++..+....+...++.++|+ |||++|+|||||+.+..++++||| +||+ ||+||||
T Consensus 131 ~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwNfP~~~~~~~~~pal-aGN~---VVlKPs~ 206 (522)
T cd07123 131 AACELIDFLRFNVKYAEELYAQQPLSSPAGVWNRLEYRPLEGFVYAVSPFNFTAIGGNLAGAPAL-MGNV---VLWKPSD 206 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEecCCceEEEECCcccHHHHHHHHHHHHH-hCCE---EEEECCC
Confidence 6778899999999998887665333222244568899998 999999999999999999999999 6999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~ 105 (109)
.+|+++..++++|.++|++.+
T Consensus 207 ~tp~~~~~l~~~l~~aGlP~g 227 (522)
T cd07123 207 TAVLSNYLVYKILEEAGLPPG 227 (522)
T ss_pred CCCHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999875
No 81
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.89 E-value=4.9e-23 Score=171.92 Aligned_cols=90 Identities=28% Similarity=0.332 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+.+++++++||+..+++... ...++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 738 ~A~~EV~eaidflryyA~~a~~~~~------------~~~~~PlGVV~~IsPWNFPlai~~g~iaaALaAGN~---VV~K 802 (1318)
T PRK11809 738 NAIAEVREAVDFLRYYAGQVRDDFD------------NDTHRPLGPVVCISPWNFPLAIFTGQVAAALAAGNS---VLAK 802 (1318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------------CceeecccEEEEECCCccHHHHHHHHHHHHHHcCCe---EEEe
Confidence 4667999999999999998765321 246899999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||+||+++..++++++++|+|.+.
T Consensus 803 PseqTpl~a~~lv~ll~eAGlP~gv 827 (1318)
T PRK11809 803 PAEQTPLIAAQAVRILLEAGVPAGV 827 (1318)
T ss_pred CCCCcHHHHHHHHHHHHHhCcCcCe
Confidence 9999999999999999999999875
No 82
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=99.89 E-value=1.1e-22 Score=156.75 Aligned_cols=96 Identities=26% Similarity=0.381 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++||++.+++..++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+||||
T Consensus 98 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~---VV~KPs~ 173 (480)
T cd07559 98 ADIPLAIDHFRYFAGVIRAQEGSLSEID-EDTLSYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNT---VVLKPAS 173 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCC-CCceeEEEEeccceEEEECCCchHHHHHHHHHHHHHHcCCE---EEEECch
Confidence 3899999999999999887655433322 23456889999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~ 105 (109)
.+|+++..++++++++ .|.|
T Consensus 174 ~tp~~~~~l~~l~~~~-lP~g 193 (480)
T cd07559 174 QTPLSILVLMELIGDL-LPKG 193 (480)
T ss_pred hhhHHHHHHHHHHHHh-CCcC
Confidence 9999999999999985 6655
No 83
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=99.89 E-value=1.6e-22 Score=154.48 Aligned_cols=101 Identities=25% Similarity=0.266 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCc-cCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 3 GIGEVQEVIDICDYAVGLSRTYSGSI-LPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 3 a~~ev~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
+..|+..+++.++|+++.++++.+.+ .+.. ..+...+++++|+|||++|+|||||+.+..+++++||++||+ ||
T Consensus 75 ~~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~l~~ALaaGN~---vi 151 (453)
T cd07099 75 AGLEVLLALEAIDWAARNAPRVLAPRKVPTGLLMPNKKATVEYRPYGVVGVISPWNYPLLTPMGDIIPALAAGNA---VV 151 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCcccCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCE---EE
Confidence 45688999999999999988876543 2211 124466889999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+|||+.+|+++..+++++.++|.+.++
T Consensus 152 lKps~~~p~~~~~l~~~l~~ag~P~g~ 178 (453)
T cd07099 152 LKPSEVTPLVGELLAEAWAAAGPPQGV 178 (453)
T ss_pred EECCccchHHHHHHHHHHHHcCCCCCe
Confidence 999999999999999999999998765
No 84
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=99.89 E-value=1.5e-22 Score=155.03 Aligned_cols=99 Identities=24% Similarity=0.278 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++|+++.++++.++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 75 ~a~~ev~~~~~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VV~K 150 (456)
T cd07107 75 AMLGDVMVAAALLDYFAGLVTELKGETIPVG-GRNLHYTLREPYGVVARIVAFNHPLMFAAAKIAAPLAAGNT---VVVK 150 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCceEEEEEecceEEEEECCcccHHHHHHHHHhHHHHcCCE---EEEe
Confidence 3556899999999999998877766544432 23456789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
||+.+|+++..+++++.++ ++.+
T Consensus 151 ps~~~p~~~~~l~~~~~~~-lP~g 173 (456)
T cd07107 151 PPEQAPLSALRLAELAREV-LPPG 173 (456)
T ss_pred CCCCChHHHHHHHHHHHHh-CCcC
Confidence 9999999999999999884 6654
No 85
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=99.89 E-value=1.6e-22 Score=154.89 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=85.5
Q ss_pred chH-HHHHHHHHHHHHHHHhhhhhcCC-ccCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGI-GEVQEVIDICDYAVGLSRTYSGS-ILPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~-~ev~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++ .|+..+++.++|+++.++++.+. ..... ..+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 54 ~a~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~--- 130 (449)
T cd07136 54 EAYMTEIGFVLSEINYAIKHLKKWMKPKRVKTPLLNFPSKSYIYYEPYGVVLIIAPWNYPFQLALAPLIGAIAAGNT--- 130 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccCCceeEEEEecCeEEEEECCCchHHHHHHHHHHHHHhcCCE---
Confidence 354 48999999999999998887654 22211 123456889999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..++++++++ ++.|.
T Consensus 131 vi~Kps~~tp~~~~~l~~~~~~a-lP~gv 158 (449)
T cd07136 131 AVLKPSELTPNTSKVIAKIIEET-FDEEY 158 (449)
T ss_pred EEEECcccchHHHHHHHHHHHHh-CCCCE
Confidence 99999999999999999999997 77664
No 86
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.89 E-value=1.8e-22 Score=156.17 Aligned_cols=102 Identities=23% Similarity=0.161 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCC--ccCC-----CCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCC
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGS--ILPS-----ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~--~~~~-----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt 74 (109)
++..|+..+++.++|++..+.++.++ .... ...+...+++++|+|||++|+|||||+.+.++++++||++||+
T Consensus 109 ~a~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~ 188 (496)
T PLN00412 109 DAVTEVVRSGDLISYTAEEGVRILGEGKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNA 188 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCccCCceeEEEEecceEEEEECCCCchHHHHHHHHHHHHHcCCE
Confidence 45568899999999999887776432 1111 1112245788999999999999999999999999999999999
Q ss_pred CCcEEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 75 LGQVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 75 ~~~vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|.++..+++++.++|.+.++
T Consensus 189 ---VIlKPs~~t~~~~~~l~~~l~~aglP~g~ 217 (496)
T PLN00412 189 ---VVLKPPTQGAVAALHMVHCFHLAGFPKGL 217 (496)
T ss_pred ---EEEECCccCcHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999998875
No 87
>PLN02203 aldehyde dehydrogenase
Probab=99.89 E-value=1.9e-22 Score=155.66 Aligned_cols=101 Identities=23% Similarity=0.179 Sum_probs=85.0
Q ss_pred chH-HHHHHHHHHHHHHHHhhhhhcCCc---cCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGI-GEVQEVIDICDYAVGLSRTYSGSI---LPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~-~ev~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
+++ .|+..+++.++|+++.++++.+.. .+....+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 62 ea~~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~reP~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~--- 138 (484)
T PLN02203 62 EAYRDEVGVLTKSANLALSNLKKWMAPKKAKLPLVAFPATAEVVPEPLGVVLIFSSWNFPIGLSLEPLIGAIAAGNA--- 138 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccCCceeEEEEecccEEEEEcCCcchHHHHHHHHHHHHHcCCE---
Confidence 453 599999999999999888876532 1211123456889999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..++++++++ ++.+.
T Consensus 139 VVlKps~~tp~~~~~l~~~~~~~-lP~gv 166 (484)
T PLN02203 139 VVLKPSELAPATSAFLAANIPKY-LDSKA 166 (484)
T ss_pred EEEECCCcChHHHHHHHHHHHHh-CCcCE
Confidence 99999999999999999999984 66653
No 88
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=99.89 E-value=2.1e-22 Score=154.89 Aligned_cols=97 Identities=25% Similarity=0.399 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.+++|++.++++.+...+....+...++.|+|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 99 ~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~r~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~---VIlKps~ 175 (475)
T PRK13473 99 DEIPAIVDVFRFFAGAARCLEGKAAGEYLEGHTSMIRRDPVGVVASIAPWNYPLMMAAWKLAPALAAGNT---VVLKPSE 175 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCCceeEEEEecceeEEEEccCChHHHHHHHHHHHHHhcCCE---EEEECCC
Confidence 3899999999999998887765432221223356789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~ 105 (109)
.+|+++..+++++.++ ++.+
T Consensus 176 ~~p~~~~~l~~~~~~a-lP~g 195 (475)
T PRK13473 176 ITPLTALKLAELAADI-LPPG 195 (475)
T ss_pred CChHHHHHHHHHHHHh-CCcC
Confidence 9999999999999998 7755
No 89
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=99.89 E-value=2.5e-22 Score=152.44 Aligned_cols=101 Identities=34% Similarity=0.378 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 3 a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
+..|+..+++.++++++.+++..+...+....+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+||
T Consensus 57 ~~~ei~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~---Vi~Kp 133 (431)
T cd07104 57 AAFEVGAAIAILREAAGLPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPLILAMRSVAPALALGNA---VVLKP 133 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceeEEEEeeeeeEEEECCCCcHHHHHHHHHHHHHHcCCe---EEeeC
Confidence 456889999999999998877655433332234456889999999999999999999999999999999999 99999
Q ss_pred CCCchHH-HHHHHHHHHhcCcccCC
Q psy3661 83 VEVVPRW-FQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 83 se~tp~~-~~~l~~~~~~ag~~~~~ 106 (109)
||.+|.+ +..+.++++++|.+.+.
T Consensus 134 s~~~p~~~~~~l~~~l~~aGlP~gv 158 (431)
T cd07104 134 DSRTPVTGGLLIAEIFEEAGLPKGV 158 (431)
T ss_pred CCCChHHHHHHHHHHHHHcCCCccc
Confidence 9999998 67899999999998764
No 90
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=99.88 E-value=2.7e-22 Score=154.06 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCC----CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSER----PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
++..|++.+++.++++++.++++.++..+.+. .+...+++++|+|||++|+|||||+.+.++++++||++||+
T Consensus 95 ~a~~ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~AL~aGN~--- 171 (473)
T cd07082 95 DALKEVDRTIDYIRDTIEELKRLDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLIPALIMGNT--- 171 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCceeEEEEecceEEEEECCcCcHHHHHHHHHHHHHHcCCE---
Confidence 34568999999999999998887655332211 23456889999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|.++..++++++++|.+.++
T Consensus 172 vilKps~~~~~~~~~l~~~l~~aglp~~~ 200 (473)
T cd07082 172 VVFKPATQGVLLGIPLAEAFHDAGFPKGV 200 (473)
T ss_pred EEEECCCCCcHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999998775
No 91
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=99.88 E-value=2.5e-22 Score=153.12 Aligned_cols=98 Identities=26% Similarity=0.226 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCc---cCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSI---LPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++||++.++++.+.. .+........++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 59 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VvlK 135 (432)
T cd07137 59 DEVSVLVSSCKLAIKELKKWMAPEKVKTPLTTFPAKAEIVSEPLGVVLVISAWNFPFLLSLEPVIGAIAAGNA---VVLK 135 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCCcccCCceeEEEEecCcEEEEEcCCchHHHHHHHHHHHHHhcCCE---EEEE
Confidence 489999999999999887755431 1211112345789999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++|+++ .+.+.
T Consensus 136 ps~~tp~~~~~l~~~~~~~-~P~gv 159 (432)
T cd07137 136 PSELAPATSALLAKLIPEY-LDTKA 159 (432)
T ss_pred CCCcChHHHHHHHHHHHHh-CCcCe
Confidence 9999999999999999984 66654
No 92
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=99.88 E-value=2.5e-22 Score=154.07 Aligned_cols=95 Identities=23% Similarity=0.171 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++++++.++++.+... ....++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 96 ~ev~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---Vv~Kps~ 167 (466)
T cd07138 96 AQVGLGIGHLRAAADALKDFEFEER-----RGNSLVVREPIGVCGLITPWNWPLNQIVLKVAPALAAGCT---VVLKPSE 167 (466)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccc-----CceEEEEEeecceEEEECCCccHHHHHHHHHHHHHhcCCE---EEEECCC
Confidence 3788889999999998877654321 1245778999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
.+|+++..++++|+++|.+.++-
T Consensus 168 ~~p~~~~~l~~~~~~aGlP~g~v 190 (466)
T cd07138 168 VAPLSAIILAEILDEAGLPAGVF 190 (466)
T ss_pred cCcHHHHHHHHHHHHcCCCCCcE
Confidence 99999999999999999998763
No 93
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=99.88 E-value=3.7e-22 Score=152.32 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCC----CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSE----RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ 77 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~ 77 (109)
++..|+..+++.++|+++.++++.++..+.+ ..+...+++++|+|||++|+|||||+.+.++++++||++||+
T Consensus 77 ~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~--- 153 (453)
T cd07149 77 DARKEVDRAIETLRLSAEEAKRLAGETIPFDASPGGEGRIGFTIREPIGVVAAITPFNFPLNLVAHKVGPAIAAGNA--- 153 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCCeeEEEEeecceEEEEECCCCChHHHHHHHHHHHHHcCCE---
Confidence 3556889999999999998877765433321 113345788999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHhcCcccCCC
Q psy3661 78 VALVGVEVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 78 vvlKpse~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
||+|||+.+|+++..+++++.++|.+.++-
T Consensus 154 VI~Kps~~~p~~~~~l~~~l~~ag~P~gvv 183 (453)
T cd07149 154 VVLKPASQTPLSALKLAELLLEAGLPKGAL 183 (453)
T ss_pred EEEECCCcchHHHHHHHHHHHHcCcCccce
Confidence 999999999999999999999999988763
No 94
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=99.88 E-value=3.8e-22 Score=152.16 Aligned_cols=98 Identities=22% Similarity=0.149 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCcc-CCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSIL-PSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++||++.+++..+... ... ..+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 59 ~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~---vvlK 135 (434)
T cd07133 59 AEILPSIAGIKHARKHLKKWMKPSRRHVGLLFLPAKAEVEYQPLGVVGIIVPWNYPLYLALGPLIAALAAGNR---VMIK 135 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCccccCCCceEEEEecccEEEEEcCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4899999999999999887654432 111 123356889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|.++..++++++++ .+.++
T Consensus 136 ps~~~p~~~~~l~~l~~~a-lP~g~ 159 (434)
T cd07133 136 PSEFTPRTSALLAELLAEY-FDEDE 159 (434)
T ss_pred CCCcChHHHHHHHHHHHHh-CCcCe
Confidence 9999999999999999996 55543
No 95
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=99.88 E-value=5.1e-22 Score=151.62 Aligned_cols=101 Identities=20% Similarity=0.079 Sum_probs=84.7
Q ss_pred chH-HHHHHHHHHHHHHHHhhhhhcCCccCCC----CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCC
Q psy3661 2 RGI-GEVQEVIDICDYAVGLSRTYSGSILPSE----RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLG 76 (109)
Q Consensus 2 ~a~-~ev~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~ 76 (109)
+++ .|+..+++.++||++.++++........ ..+...++.++|+|||++|+|||||+.+.++++++||++||+
T Consensus 61 e~~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~-- 138 (436)
T cd07135 61 ETLLTEVSGVKNDILHMLKNLKKWAKDEKVKDGPLAFMFGKPRIRKEPLGVVLIIGPWNYPVLLALSPLVGAIAAGCT-- 138 (436)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccCCCceEEEeccCcEEEEECCCcchHHHHHHHHHHHHHcCCE--
Confidence 344 4899999999999998887653322111 113356889999999999999999999999999999999999
Q ss_pred cEEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 77 QVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 77 ~vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+|||+.+|+++..+++++++ |++.++
T Consensus 139 -Vi~Kps~~~p~~~~~l~~l~~~-~lP~g~ 166 (436)
T cd07135 139 -VVLKPSELTPHTAALLAELVPK-YLDPDA 166 (436)
T ss_pred -EEEECCccChHHHHHHHHHHHH-hCCcCE
Confidence 9999999999999999999998 687764
No 96
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=99.88 E-value=5.8e-22 Score=151.72 Aligned_cols=99 Identities=28% Similarity=0.323 Sum_probs=85.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
+++.|+..+++.++++++.+.++.++..+.. .+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 76 ~a~~ev~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VVlK 151 (457)
T cd07108 76 QARPEAAVLADLFRYFGGLAGELKGETLPFG-PDVLTYTVREPLGVVGAILPWNAPLMLAALKIAPALVAGNT---VVLK 151 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeccC-CCeeEEEEeecceEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 4567899999999999998877666544332 34456788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
||+.+|.++..+++++.++ .+.+
T Consensus 152 ps~~~p~~~~~l~~~~~~~-lP~~ 174 (457)
T cd07108 152 AAEDAPLAVLLLAEILAQV-LPAG 174 (457)
T ss_pred CCCCCcHHHHHHHHHHHHh-CCcC
Confidence 9999999999999999875 5544
No 97
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=99.87 E-value=8.5e-22 Score=150.41 Aligned_cols=98 Identities=27% Similarity=0.376 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.++++++.++.+.+........+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|||+
T Consensus 79 ~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~---VIlKps~ 155 (450)
T cd07092 79 DELPGAVDNFRFFAGAARTLEGPAAGEYLPGHTSMIRREPIGVVAQIAPWNYPLMMAAWKIAPALAAGNT---VVLKPSE 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCccCCCceeEEEEeccceEEEECCCCcHHHHHHHHHHHHHHcCCE---EEEECCc
Confidence 4888999999999998877655432221223356789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
.+|+++..++++|++ |.+.++
T Consensus 156 ~~~~~~~~l~~~~~~-glP~g~ 176 (450)
T cd07092 156 TTPLTTLLLAELAAE-VLPPGV 176 (450)
T ss_pred cchHHHHHHHHHHHh-cCCccc
Confidence 999999999999998 988776
No 98
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.87 E-value=6.9e-22 Score=158.32 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCccC--CCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 4 IGEVQEVIDICDYAVGLSRTYSGSILP--SERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 4 ~~ev~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
..|+..+++.++||++. .+..++..+ ....+...++.++|+|||++|+||| |+.+. ++++|||++||+ ||+|
T Consensus 364 ~~ev~~~~~~~~~~a~~-~~~~g~~~~~~~~~~~~~~~~~r~PlGVV~~I~Pwn-P~~~~-~kiapALaaGNt---VVlK 437 (718)
T PLN02418 364 PGKIASLAASIRQLADM-EDPIGRVLKRTEVADGLVLEKTSCPLGVLLIIFESR-PDALV-QIASLAIRSGNG---LLLK 437 (718)
T ss_pred HHHHHHHHHHHHHHhcC-ccccCccccccccCCCceEEEEEEeeeEEEEEeCCC-cHHHH-HHHHHHHHhCCE---EEEe
Confidence 45899999999999998 444444332 1122334678999999999999999 99998 999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
|||.||+++..++++++++ +|.+
T Consensus 438 Pse~tp~s~~~l~~l~~eA-lP~g 460 (718)
T PLN02418 438 GGKEAARSNAILHKVITDA-IPKT 460 (718)
T ss_pred CCccchHHHHHHHHHHHHH-cccc
Confidence 9999999999999999999 8877
No 99
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=99.87 E-value=6.8e-22 Score=149.54 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCC--CCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPS--ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
+++.|+..+++.++||++.++.+ ++..+. ..++...++.++|+|||++|+||| | .+.++++++||++||+ ||
T Consensus 60 ~a~~ev~~~~~~~~~~a~~a~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~pw~-p-~~~~~~~~~ALaaGN~---vV 133 (398)
T TIGR00407 60 LTEGRLKGIADGVKDVIELADPV-GKVIDGRELDSGLTLERVRVPLGVLGVIYEAR-P-NVTVDIASLCLKTGNA---VI 133 (398)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCC-cccccceecCCCceEEEEEeCcEEEEEEeCCC-c-hHHHHHHHHHHHhCCe---EE
Confidence 35678999999999999988764 543332 113446788999999999999997 6 6688999999999999 99
Q ss_pred EecCCCchHHHHHHHHH----HHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKT----LKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~----~~~ag~~~~~ 106 (109)
+||||.||+++..++++ +.++|.|.++
T Consensus 134 lKps~~tp~~~~~l~~~~~~al~eaGlP~gv 164 (398)
T TIGR00407 134 LRGGKEAVRSNKALVEVIQDALAQTGLPVGA 164 (398)
T ss_pred ECCChhhHHHHHHHHHHHHHHHHHcCCChhH
Confidence 99999999999999999 5599998875
No 100
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.87 E-value=6e-22 Score=164.99 Aligned_cols=90 Identities=27% Similarity=0.328 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+.+++++++||+..+++..+ ...++|+|||++|+|||||+.+..+++++||++||+ ||+|
T Consensus 646 ea~~Ev~eaid~lr~ya~~a~~~~~------------~~~~~P~GVv~~IsPwNfPlai~~g~i~aALaaGN~---VV~K 710 (1208)
T PRK11905 646 NAIAEVREAVDFLRYYAAQARRLLN------------GPGHKPLGPVVCISPWNFPLAIFTGQIAAALVAGNT---VLAK 710 (1208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------------CceecCccEEEEEcCCcCHHHHHHHHHHHHHHcCCE---EEEe
Confidence 4667999999999999998876542 134679999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.||+++..++++|+++|+|.+.
T Consensus 711 Pse~tpl~a~~l~~ll~eAGlP~gv 735 (1208)
T PRK11905 711 PAEQTPLIAARAVRLLHEAGVPKDA 735 (1208)
T ss_pred CCcccHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999999875
No 101
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=99.87 E-value=8.3e-22 Score=153.95 Aligned_cols=98 Identities=11% Similarity=-0.024 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcc---CCCCCC---ceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 6 EVQEVIDICDYAVGLSRTYSGSIL---PSERPG---HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 6 ev~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
++++.++.++|+++.++++.++.. +....+ ...++.++|+||+++|+|||||+.+..+++++||++||+ ||
T Consensus 149 ~~~r~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~P~GVv~vI~PwNfP~~~~~~~l~~ALaaGN~---VV 225 (551)
T TIGR02288 149 AQDRGLEAVAYAYREMSRIPETAVWEKPQGKNDPLKLKKRFTIVPRGIALVIGCSTFPTWNTYPGLFASLATGNP---VL 225 (551)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccccCCCCCcccccceEEEEecCeEEEEcCcccHHHHHHHHHHHHHHcCCe---EE
Confidence 567788999999998887765432 221111 122357999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHH----HHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQ----TLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~----~l~~~~~~ag~~~~~ 106 (109)
+||||.+|+++. .+.+++.++|++.+.
T Consensus 226 lKPs~~tpl~~~~~~~~l~e~l~eAGlP~gv 256 (551)
T TIGR02288 226 VKPHPGAILPLALTVQVAREVLGEAGFDPNL 256 (551)
T ss_pred EECCcccchhHHHHHHHHHHHHHHcCcChhH
Confidence 999999999765 677999999998764
No 102
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=150.74 Aligned_cols=98 Identities=21% Similarity=0.125 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCc-cCC--CCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSI-LPS--ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++|+++..+++...+ ... .......+++++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 67 ~Ev~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~PlGVV~iI~PwN~Pl~l~~~~l~~ALaaGN~---VIlK 143 (493)
T PTZ00381 67 TEVLLTVAEIEHLLKHLDEYLKPEKVDTVGVFGPGKSYIIPEPLGVVLVIGAWNYPLNLTLIPLAGAIAAGNT---VVLK 143 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCccccCCCceEEEEecCcEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 488889999999999888875432 111 1112356889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|.++..++++++++ .+.++
T Consensus 144 Pse~tp~t~~~l~~ll~~~-lp~~~ 167 (493)
T PTZ00381 144 PSELSPHTSKLMAKLLTKY-LDPSY 167 (493)
T ss_pred CCccCHHHHHHHHHHHHHh-CCcCE
Confidence 9999999999999999884 66543
No 103
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=99.87 E-value=1.1e-21 Score=151.98 Aligned_cols=90 Identities=23% Similarity=0.285 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++||++.+++..+. +.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 130 ~a~~ev~~~i~~l~~~a~~~~~~~~~------------~~~~P~GVV~~I~pwN~P~~~~~~~i~~ALaaGN~---VVlK 194 (500)
T TIGR01238 130 NAIAEVREAVDFCRYYAKQVRDVLGE------------FSVESRGVFVCISPWNFPLAIFTGQISAALAAGNT---VIAK 194 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc------------eeccCcceEEEECCCchHHHHHHHHHHHHHHcCCE---EEEe
Confidence 45678999999999999988654321 35899999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..+++++.++|.+.+.
T Consensus 195 ps~~tp~~~~~l~~~~~~aGlP~gv 219 (500)
T TIGR01238 195 PAEQTSLIAYRAVELMQEAGFPAGT 219 (500)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999998775
No 104
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=99.87 E-value=1.6e-21 Score=149.08 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=63.0
Q ss_pred ceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHH----hcCcccCC
Q psy3661 36 HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLK----NQNQIQKC 106 (109)
Q Consensus 36 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~----~ag~~~~~ 106 (109)
...++.++|+|||++|+|||||+.+..++++|||++||+ ||+||||.+|+++..++++++ ++|.|.++
T Consensus 87 ~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~---VVlKPs~~tp~~~~~l~~l~~~~l~~aG~P~gv 158 (439)
T cd07081 87 GGTLIIAEPIGVVASITPSTNPTSTVIFKSLISLKTRNS---IIFSPHPRAKKVTQRAATLLLQAAVAAGAPENL 158 (439)
T ss_pred CceEEEEecceEEEEECCCcchHHHHHHHHHHHHhcCCe---EEEECCccchHHHHHHHHHHHHHHHHcCCChhh
Confidence 345889999999999999999999999999999999999 999999999999999999885 67988775
No 105
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=99.87 E-value=5.2e-22 Score=152.90 Aligned_cols=90 Identities=29% Similarity=0.365 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++-.||.+++||+|||+..+++-.++ ..+.|+|++.+|||||||+.++...++.||++||+ |+-|
T Consensus 206 naIAEVREAVDFlrYYA~~ar~~~g~------------~~~~~~G~vVcISPWNFPLAIFtGqiaAAL~aGN~---VlAK 270 (769)
T COG4230 206 NAIAEVREAVDFLRYYAGQARDTFGN------------LTHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS---VLAK 270 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCc------------cccCCCCcEEEECCCCchHHHHHhHHHHHHHcCCc---cccC
Confidence 35579999999999999988863321 34668999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+|+||+.+..-+++++|||++.+-
T Consensus 271 PAEqTpLIAa~aV~ll~eAGvP~~~ 295 (769)
T COG4230 271 PAEQTPLIAAQAVRLLHEAGVPPGV 295 (769)
T ss_pred ccccccHHHHHHHHHHHHcCCChhh
Confidence 9999999999999999999999764
No 106
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=99.86 E-value=3e-21 Score=147.59 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+..+++.+++|++.+.+..+...+.. .+...++.++|+|||++|+|||||+...++++++||++||+ ||+|||+
T Consensus 79 ~ev~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~AL~aGN~---VIlkps~ 154 (455)
T cd07093 79 RDIPRAAANFRFFADYILQLDGESYPQD-GGALNYVLRQPVGVAGLITPWNLPLMLLTWKIAPALAFGNT---VVLKPSE 154 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHhCCccccCC-CCceEEEEEEeeeEEEEECCCChHHHHHHHHHHHHHhcCCE---EEeECCC
Confidence 3888999999999998877544433222 24456789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhcCcccCCC
Q psy3661 85 VVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
.+|+++..+.++|+++|.+.++-
T Consensus 155 ~~p~~~~~l~~~l~~aglP~g~v 177 (455)
T cd07093 155 WTPLTAWLLAELANEAGLPPGVV 177 (455)
T ss_pred cCcHHHHHHHHHHHhcCCCccce
Confidence 99999999999999999998753
No 107
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=99.86 E-value=1.8e-21 Score=148.63 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=75.5
Q ss_pred HHHHHHH-HHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 6 EVQEVID-ICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 6 ev~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
|+..+++ .++|+++. +..+.. .. ..+...+++|+|+|||++|+|||||+.+..+++++||++||+ ||+|||+
T Consensus 60 e~~~~~~~~~~~~~~~--~~~g~~-~~-~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~---VVlKps~ 132 (436)
T cd07122 60 KNHFASEYVYNDIKDM--KTVGVI-EE-DEEKGIVEIAEPVGVIAALIPSTNPTSTAIFKALIALKTRNA---IIFSPHP 132 (436)
T ss_pred HHHHHHHHHHHHHhcC--cceeee-cc-CCCCCeEEEeecccEEEEEeCCCCchHHHHHHHHHHHHcCCc---EEEECCc
Confidence 5666666 67777752 222221 11 123456789999999999999999999999999999999999 9999999
Q ss_pred CchHHHHHHHHHHH----hcCcccCC
Q psy3661 85 VVPRWFQTLAKTLK----NQNQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~----~ag~~~~~ 106 (109)
.+|+++..++++++ ++|.+.++
T Consensus 133 ~tp~~~~~~~~~~~~~l~eaG~P~g~ 158 (436)
T cd07122 133 RAKKCSIEAAKIMREAAVAAGAPEGL 158 (436)
T ss_pred chhhHHHHHHHHHHHHHHHcCCCchh
Confidence 99999999888875 79999876
No 108
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=99.86 E-value=2.6e-21 Score=149.25 Aligned_cols=87 Identities=24% Similarity=0.344 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCC
Q psy3661 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEV 85 (109)
Q Consensus 6 ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~ 85 (109)
|+..+++.+++++++++...+ ....++|+|||++|+|||||+.+.++++++||++||+ ||+|||+.
T Consensus 120 ev~~~~~~~~~~~~~~~~~~~-----------~~~~~~P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~---VVlKps~~ 185 (480)
T cd07111 120 DIPLVARHFYHHAGWAQLLDT-----------ELAGWKPVGVVGQIVPWNFPLLMLAWKICPALAMGNT---VVLKPAEY 185 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----------CcccceecceEEEECCCccHHHHHHHHHHHHHHcCCE---EEEECCCC
Confidence 788888889998887765432 1345899999999999999999999999999999999 99999999
Q ss_pred chHHHHHHHHHHHhcCcccCC
Q psy3661 86 VPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 86 tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+|.++..++++++++|++.++
T Consensus 186 tp~~~~~l~~~~~~aGlP~gv 206 (480)
T cd07111 186 TPLTALLFAEICAEAGLPPGV 206 (480)
T ss_pred ChHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999775
No 109
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=99.86 E-value=4.9e-21 Score=146.26 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=81.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
++..|+..+++.++++++.... ++.... ..+...++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 75 ~a~~ev~~~~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VilK 148 (446)
T cd07106 75 EAQFEVGGAVAWLRYTASLDLP--DEVIED-DDTRRVELRRKPLGVVAAIVPWNFPLLLAAWKIAPALLAGNT---VVLK 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc--CccccC-CCCceEEEEEEcceEEEEEcCCChHHHHHHHHHHHHHHcCCE---EEEE
Confidence 3556899999999999987632 222221 124456889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++++++ .+.++
T Consensus 149 ps~~~p~~~~~l~~~~~~~-lP~g~ 172 (446)
T cd07106 149 PSPFTPLCTLKLGELAQEV-LPPGV 172 (446)
T ss_pred CCccchHHHHHHHHHHHHh-CCcCe
Confidence 9999999999999999985 66554
No 110
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=99.86 E-value=5.3e-21 Score=146.27 Aligned_cols=98 Identities=22% Similarity=0.208 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCC---CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSE---RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++|+++.++++........ ......++.++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 58 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~---VvlK 134 (443)
T cd07132 58 SEILLVKNEIKYAISNLPEWMKPEPVKKNLATLLDDVYIYKEPLGVVLIIGAWNYPLQLTLVPLVGAIAAGNC---VVIK 134 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccCCCccccCCCceEEEEecccEEEEEcCCchhHHHHHHHHHHHHHcCCE---EEEE
Confidence 4888999999999998887754322111 112346889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|+++..++++++++ ++.++
T Consensus 135 ps~~~~~~~~~l~~~~~~~-lp~gv 158 (443)
T cd07132 135 PSEVSPATAKLLAELIPKY-LDKEC 158 (443)
T ss_pred CCccCHHHHHHHHHHHHHh-CCcCe
Confidence 9999999999999999885 66553
No 111
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=99.85 E-value=4.3e-21 Score=146.33 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=63.2
Q ss_pred eeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHH----HhcCcccCCC
Q psy3661 37 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTL----KNQNQIQKCP 107 (109)
Q Consensus 37 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~----~~ag~~~~~~ 107 (109)
..+++++|+|||++|+|||||+.+.++++++||++||+ ||+||||.||+++..+++++ .++|.|.++-
T Consensus 90 ~~~~~~~PlGVV~~I~PwN~P~~~~~~~~~~ALaaGN~---VVlKpse~tp~t~~~l~~l~~~~~~~aGlP~gvv 161 (429)
T cd07121 90 LTLVEYAPFGVIGAITPSTNPTETIINNSISMLAAGNA---VVFNPHPGAKKVSAYAVELINKAIAEAGGPDNLV 161 (429)
T ss_pred ceEEEEcccceEEEEccCCCchhHHHHHHHHHHHcCCC---EEEECCccchhHHHHHHHHHHHHHHHcCCCcceE
Confidence 45788999999999999999999999999999999999 99999999999999999988 4789988763
No 112
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=99.85 E-value=6.5e-21 Score=145.04 Aligned_cols=98 Identities=22% Similarity=0.168 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCc-c--CCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSI-L--PSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++++++.++++.+.. . .....+...+++++|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 58 ~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~n~P~~~~~~~~~~aL~aGN~---vvlK 134 (426)
T cd07087 58 TEIAVVLGEIDHALKHLKKWMKPRRVSVPLLLQPAKAYVIPEPLGVVLIIGPWNYPLQLALAPLIGAIAAGNT---VVLK 134 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCccccCCCceEEEEecCcEEEEEcCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 489999999999999887765432 1 111123356889999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
||+.+|+++..++++|++ |.+.++
T Consensus 135 ps~~~p~~~~~l~~~~~~-~~P~gv 158 (426)
T cd07087 135 PSELAPATSALLAKLIPK-YFDPEA 158 (426)
T ss_pred CCccCHHHHHHHHHHHHH-hCCCCE
Confidence 999999999999999998 677664
No 113
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=99.85 E-value=4.6e-21 Score=146.94 Aligned_cols=103 Identities=23% Similarity=0.203 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhc--CCccCCC------CCCceeeEeeeeceeEEEEcccchhHHH--HHHHHHHHHhc
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYS--GSILPSE------RPGHVLLENWNPLGVVGIISAFNFPVAV--YGWNAAIALPG 71 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~--~~~~~~~------~~~~~~~~~~~P~GVv~~I~PwN~P~~~--~~~k~~pAL~a 71 (109)
++..|+..+++.++|+++.+++.. +...... ..+...++.++|+|||++|+|||||+.+ .++++++||++
T Consensus 55 ~~~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~a~ALaa 134 (454)
T cd07129 55 RLQGELGRTTGQLRLFADLVREGSWLDARIDPADPDRQPLPRPDLRRMLVPLGPVAVFGASNFPLAFSVAGGDTASALAA 134 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCccceEEeeccceEEEECCCCCchhhhhhhhhHHHHHHc
Confidence 345689999999999998876532 2211110 0122347889999999999999999987 55899999999
Q ss_pred CCCCCcEEEecCCCchHHHHHHHHHHH----hcCcccCCC
Q psy3661 72 WQVLGQVALVGVEVVPRWFQTLAKTLK----NQNQIQKCP 107 (109)
Q Consensus 72 GNt~~~vvlKpse~tp~~~~~l~~~~~----~ag~~~~~~ 107 (109)
||+ ||+|||+.+|+++.++++++. ++|.|.++-
T Consensus 135 GN~---VVlKps~~~p~t~~~l~~~~~~~l~~aGlP~gvv 171 (454)
T cd07129 135 GCP---VVVKAHPAHPGTSELVARAIRAALRATGLPAGVF 171 (454)
T ss_pred CCe---EEEEcCCCCchHHHHHHHHHHHHHHHhCCChhhe
Confidence 999 999999999999999988874 899998864
No 114
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=99.85 E-value=1.2e-20 Score=143.87 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCc-c--CCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSI-L--PSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++++++.+++..+.. . +....+...++.|+|+|||++|+|||||+.+.++++++||++||+ ||+|
T Consensus 58 ~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~---Vi~K 134 (433)
T cd07134 58 TEILPVLSEINHAIKHLKKWMKPKRVRTPLLLFGTKSKIRYEPKGVCLIISPWNYPFNLAFGPLVSAIAAGNT---AILK 134 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCccccCCCceEEEEecCCEEEEEcCCchHHHHHHHHHHHHHHcCCE---EEEE
Confidence 488889999999998876654321 2 111123456899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
||+.+|+++..++++++++ .+.+
T Consensus 135 ps~~~p~~~~~~~~~~~~a-~p~g 157 (433)
T cd07134 135 PSELTPHTSAVIAKIIREA-FDED 157 (433)
T ss_pred CCccCHHHHHHHHHHHHHh-CCcC
Confidence 9999999999999999998 5554
No 115
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=99.85 E-value=7.9e-21 Score=143.43 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCC
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVE 84 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse 84 (109)
.|+...++.++++++.+++..+...+. ....+++++|+|||++|+|||||+. .++++++||++||+ ||+|||+
T Consensus 64 ~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~P~Gvv~~i~p~N~P~~-~~~~~~~aL~aGN~---vilKps~ 136 (397)
T cd07077 64 SKLYKNIDTERGITASVGHIQDVLLPD---NGETYVRAFPIGVTMHILPSTNPLS-GITSALRGIATRNQ---CIFRPHP 136 (397)
T ss_pred HHHHHHHHHHHHHHHhcCcccceEecC---CCceEEEEecceEEEEEeCCCCchH-HHHHHHHHHHcCCc---EEEEcCc
Confidence 478889999999998766655433222 2356889999999999999999999 99999999999999 9999999
Q ss_pred CchHHHHHHHHHHHhc---CcccCC
Q psy3661 85 VVPRWFQTLAKTLKNQ---NQIQKC 106 (109)
Q Consensus 85 ~tp~~~~~l~~~~~~a---g~~~~~ 106 (109)
.+|+++..++++++++ |.+.++
T Consensus 137 ~~p~~~~~l~~~~~~~~~~g~p~~~ 161 (397)
T cd07077 137 SAPFTNRALALLFQAADAAHGPKIL 161 (397)
T ss_pred chhhHHHHHHHHHHHHhhcCCCCce
Confidence 9999999999999887 776553
No 116
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=99.85 E-value=1.6e-20 Score=144.09 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCC-ccCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGS-ILPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+..+++.++|+++.+++.... ..+.. ..+...++.++|+||+++|+|||||+...++++++||++||+ ||+|
T Consensus 78 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~n~P~~~~~~~~~~ALaaGN~---VIlK 154 (465)
T cd07098 78 GEILVTCEKIRWTLKHGEKALRPESRPGGLLMFYKRARVEYEPLGVVGAIVSWNYPFHNLLGPIIAALFAGNA---IVVK 154 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCCccccCCceeEEEEecceeEEEEcccCcHHHHHHHHHHHHHHcCCE---EEEE
Confidence 47888999999999887765432 21211 112345788999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHH----HhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTL----KNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~----~~ag~~~~~ 106 (109)
||+.+|+++..+++++ +++|+|.+.
T Consensus 155 ps~~~p~~~~~~~~~~~~~l~~aGlP~gv 183 (465)
T cd07098 155 VSEQVAWSSGFFLSIIRECLAACGHDPDL 183 (465)
T ss_pred CCCcCcHHHHHHHHHHHHHHHhcCCCCCe
Confidence 9999999999766655 689998875
No 117
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=99.84 E-value=1.1e-20 Score=145.38 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred ceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHH----hcCcccCC
Q psy3661 36 HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLK----NQNQIQKC 106 (109)
Q Consensus 36 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~----~ag~~~~~ 106 (109)
...+++++|+|||++|+|||||+.+.++++++||++||+ ||+||||.+|+++..+++++. ++|.+.++
T Consensus 121 ~~~~v~~~P~GVV~~I~PwN~P~~~~~~~ia~ALaaGN~---VVlKps~~tp~t~~~l~~ll~~~l~eaGlP~gv 192 (465)
T PRK15398 121 GLTLIEYAPFGVIGAVTPSTNPTETIINNAISMLAAGNS---VVFSPHPGAKKVSLRAIELLNEAIVAAGGPENL 192 (465)
T ss_pred ceeEEEecccEEEEEeeCCCCchHHHHHHHHHHHHhCCc---EEEECCccchHHHHHHHHHHHHHHHHcCCCCCe
Confidence 346788999999999999999999999999999999999 999999999999999999986 68988775
No 118
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=99.84 E-value=1.4e-20 Score=143.94 Aligned_cols=100 Identities=17% Similarity=-0.000 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc--CCccCC-C-CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 4 IGEVQEVIDICDYAVGLSRTYS--GSILPS-E-RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 4 ~~ev~~~~~~~~~~a~~~~~~~--~~~~~~-~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
..|+..+++.++||++.++.+. +..... . ......++.++|+|||++|+|||||+.+..+++++||++||+ ||
T Consensus 56 ~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~---vv 132 (442)
T cd07084 56 AENICGDQVQLRARAFVIYSYRIPHEPGNHLGQGLKQQSHGYRWPYGPVLVIGAFNFPLWIPLLQLAGALAMGNP---VI 132 (442)
T ss_pred hhhhcchHHHHHHHHHHHHhccccccccccCCCCccccceEEeecceeEEEEcCCccHhHHHHHHHHHHHHcCCe---EE
Confidence 4588889999999999887542 211111 1 112356889999999999999999999999999999999999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCc-ccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQ-IQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~-~~~~ 106 (109)
+|||+.+|.++..++++++++|. +.+.
T Consensus 133 lKps~~~p~~~~~l~~~l~~ag~~P~g~ 160 (442)
T cd07084 133 VKPHTAVSIVMQIMVRLLHYAGLLPPED 160 (442)
T ss_pred EECCCCchHHHHHHHHHHHHhCCCCccc
Confidence 99999999999999999999998 7664
No 119
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=99.83 E-value=1.2e-19 Score=135.26 Aligned_cols=101 Identities=36% Similarity=0.550 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 3 a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
++.|+...++.++++++.+++..+........+...+++++|+||+++|.|||||+...++++++||++||+ ||+||
T Consensus 51 ~~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gvv~~i~p~n~p~~~~~~~~~~aL~~GN~---vilk~ 127 (367)
T cd06534 51 ALGEVARAIDTFRYAAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAGNT---VVLKP 127 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceeEEEEEeeeEEEEECCCchHHHHHHHHHHHHHHcCCE---EEEEC
Confidence 456899999999999999888766433322334567889999999999999999999999999999999999 99999
Q ss_pred CCCchHHHHHHHHHHHhcCcccCC
Q psy3661 83 VEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 83 se~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+.+|.++..++++|.++|.+.+.
T Consensus 128 s~~~~~~~~~l~~~l~~ag~p~~~ 151 (367)
T cd06534 128 SELTPLTALALAELLQEAGLPPGV 151 (367)
T ss_pred CCcchHHHHHHHHHHHhcCCCcCe
Confidence 999999999999999999987664
No 120
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.82 E-value=7.8e-20 Score=146.56 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCccCC--CCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecC
Q psy3661 6 EVQEVIDICDYAVGLSRTYSGSILPS--ERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV 83 (109)
Q Consensus 6 ev~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKps 83 (109)
|+..+++.++++++. .+..++..+. ...+...+++++|+|||++|+||| |+.+ .+++++||++||+ ||+|||
T Consensus 358 ei~~~~~~l~~~a~~-~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN-P~~~-~~~~~~ALaaGN~---vvlKps 431 (715)
T TIGR01092 358 KISSLAISLRQLAAM-EDPIGRVLKRTRIADNLILEKTSVPIGVLLIVFESR-PDAL-VQIASLAIRSGNG---LLLKGG 431 (715)
T ss_pred HHHHHHHHHHHHhcC-CCcccccccccccCCCceeEEEEeeceEEEEEeCCC-hHHH-HHHHHHHHHhCCE---EEEcCc
Confidence 577788888999883 3333332211 111333567899999999999999 9998 5899999999999 999999
Q ss_pred CCchHHHHHHHHHHHhcCcccCCC
Q psy3661 84 EVVPRWFQTLAKTLKNQNQIQKCP 107 (109)
Q Consensus 84 e~tp~~~~~l~~~~~~ag~~~~~~ 107 (109)
|.||+++..++++++++ ++.+.+
T Consensus 432 e~tp~t~~~l~~l~~~a-lp~g~~ 454 (715)
T TIGR01092 432 KEAARSNAILHKVITEA-IPIHVG 454 (715)
T ss_pred ccchHHHHHHHHHHHHH-cCCCCC
Confidence 99999999999999999 777643
No 121
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=99.82 E-value=1.8e-19 Score=136.61 Aligned_cols=101 Identities=34% Similarity=0.549 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 3 a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
+..|+..+++.+++++..++++.+........+...+.+++|+||+++|+|||||+...++++++||++||+ ||+||
T Consensus 55 ~~~ei~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~---vilkp 131 (432)
T cd07078 55 ALGEVARAADTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPALAAGNT---VVLKP 131 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccCCCceEEEEEeecceEEEECCCccHHHHHHHHHHHHHHcCCE---EEEEC
Confidence 346888899999999999888765543222234467889999999999999999999999999999999999 99999
Q ss_pred CCCchHHHHHHHHHHHhcCcccCC
Q psy3661 83 VEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 83 se~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+.+|.++..++++|+++|.+.++
T Consensus 132 s~~~~~~~~~l~~~l~~ag~p~~~ 155 (432)
T cd07078 132 SELTPLTALLLAELLAEAGLPPGV 155 (432)
T ss_pred CCCChHHHHHHHHHHHHcCCCcCc
Confidence 999999999999999999987664
No 122
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=99.82 E-value=9.5e-20 Score=142.47 Aligned_cols=98 Identities=12% Similarity=-0.040 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcc---CCCC---CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 6 EVQEVIDICDYAVGLSRTYSGSIL---PSER---PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 6 ev~~~~~~~~~~a~~~~~~~~~~~---~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
|++.+++.++|+++..++..++.. +... ........++|+||+++|+|||||+.+.+.++++||++||+ ||
T Consensus 149 evd~a~e~~~~a~~~~~~~~~~~~w~~~~~~~~~l~~~k~~~~~P~GVv~vI~p~nfP~~~~~~~i~~ALaaGN~---VV 225 (549)
T cd07127 149 AQDRGLEAVAYAWREMSRIPPTAEWEKPQGKHDPLAMEKTFTVVPRGVALVIGCSTFPTWNGYPGLFASLATGNP---VI 225 (549)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCCCcccccccceeEEecccEEEEEeCcCChHHHHHHHHHHHHhcCCe---EE
Confidence 799999999999998887654321 1110 01122457899999999999999999999999999999999 99
Q ss_pred EecCCCchHHHH----HHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQ----TLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~----~l~~~~~~ag~~~~~ 106 (109)
+||||.+|+++. .+.++|+|+|++.+.
T Consensus 226 vKPs~~a~ls~~~~~~~i~~~l~eAGlP~gv 256 (549)
T cd07127 226 VKPHPAAILPLAITVQVAREVLAEAGFDPNL 256 (549)
T ss_pred EECCcccchhHHHHHHHHHHHHHHcCcCccc
Confidence 999999999864 466899999998775
No 123
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=99.81 E-value=1.6e-19 Score=137.34 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
.|+..+++.++|++++++.. +...+.. ..+...++.++|+|||++|+||| | .+.++++++||++||+ ||+||
T Consensus 75 ~ev~~~~~~~~~~a~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGVv~~I~p~p-~-~~~~~~~~~ALaaGN~---vVlKP 148 (417)
T PRK00197 75 ARIEGIAEGLRQVAALPDPV-GEVLDGWTLPNGLRIGRVRVPLGVIGVIYESR-P-NVTVDAAALCLKSGNA---VILRG 148 (417)
T ss_pred HHHHHHHHHHHHHhhcCCCc-cccccceecCCCceEEEEecCceEEEEEcCCC-c-hHHHHHHHHHHHhCCe---EEEec
Confidence 57888999999999887653 4333221 12335688999999999999987 4 6788999999999999 99999
Q ss_pred CCCchHHHHHHHHHH----HhcCcccCC
Q psy3661 83 VEVVPRWFQTLAKTL----KNQNQIQKC 106 (109)
Q Consensus 83 se~tp~~~~~l~~~~----~~ag~~~~~ 106 (109)
||.||+++..+++++ +++|.|.+.
T Consensus 149 s~~tp~t~~~l~~l~~~~l~~aGlP~gv 176 (417)
T PRK00197 149 GSEAIHSNRALVAVIQEALEEAGLPADA 176 (417)
T ss_pred ChhhhHHHHHHHHHHHHHHHHcCcChhh
Confidence 999999999999886 688998764
No 124
>KOG2456|consensus
Probab=99.81 E-value=1.1e-19 Score=135.75 Aligned_cols=98 Identities=24% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCC-C--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPS-E--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
.|+....+.++|+....+++...+... . .-....+++.+|+|||++|+|||||+.+....+++|++|||+ ||+|
T Consensus 62 ~Ev~~~~~~i~~~l~~L~~wv~~~~v~~~~~t~~dk~~I~~~p~GvVLiI~~wNyP~~L~l~PligAiAAGN~---VVlK 138 (477)
T KOG2456|consen 62 NEVGYVLNEIRYALENLPEWVKPEPVKKSFLTFLDKAYIEKEPLGVVLIIGPWNYPLNLTLVPLIGAIAAGNA---VVLK 138 (477)
T ss_pred HHHHHHHHHHHHHHHhhHHhccccccCcccccccCceeEEecCCceEEEEccCCCcceeehhhhhhhhhcCCE---EEec
Confidence 377788888999998888876543221 1 112356899999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 82 GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|||.+|.++.++++++-+. +.++|
T Consensus 139 PSEls~n~a~~lakllp~Y-ld~~~ 162 (477)
T KOG2456|consen 139 PSELSPNTAKLLAKLLPQY-LDQDL 162 (477)
T ss_pred hhhcChhHHHHHHHHHHHh-cCcce
Confidence 9999999999999999765 44444
No 125
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=99.80 E-value=2.5e-19 Score=135.85 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCccCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEec
Q psy3661 5 GEVQEVIDICDYAVGLSRTYSGSILPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82 (109)
Q Consensus 5 ~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKp 82 (109)
.|++.+++.++++++..+. .+...+.. ..+...++.++|+|||++|+|| +| .+.++++++||++||+ ||+||
T Consensus 69 ~ev~~~~~~~~~~a~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~p-~~~~~~~~~ALaaGN~---vVlKp 142 (406)
T cd07079 69 ERIEAMAEGLRQVAALPDP-VGEVLRGWTLPNGLQIEKVRVPLGVIGIIYES-RP-NVTVDAAALCLKSGNA---VILRG 142 (406)
T ss_pred HHHHHHHHHHHHHHhcCCC-CcccccceeccCccceeEEecceEEEEEecCC-Cc-chHHHHHHHHHHhCCE---EEEeC
Confidence 5889999999999987553 23322211 1123467899999999999997 56 6788999999999999 99999
Q ss_pred CCCchHHHHHHHHHHH----hcCcccCC
Q psy3661 83 VEVVPRWFQTLAKTLK----NQNQIQKC 106 (109)
Q Consensus 83 se~tp~~~~~l~~~~~----~ag~~~~~ 106 (109)
||.||+++..++++++ ++|.|.+.
T Consensus 143 s~~tp~~~~~l~~~~~~~l~~aG~P~gv 170 (406)
T cd07079 143 GSEALHSNRALVEIIQEALEEAGLPEDA 170 (406)
T ss_pred CchhhhHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999996 89998764
No 126
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=99.79 E-value=9.1e-19 Score=135.44 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=62.9
Q ss_pred CceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHH----HHHHhcCcccCCC
Q psy3661 35 GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLA----KTLKNQNQIQKCP 107 (109)
Q Consensus 35 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~----~~~~~ag~~~~~~ 107 (109)
+...+..++|+|||++|+|||||+.+..+|+++||++||+ ||+|||+.+|.++..++ ++++++|.|.++-
T Consensus 95 ~~~~~~~~~PlGVV~~I~P~n~P~~~~~~k~~~AL~aGNa---VIlKps~~a~~s~~~~~~~l~~~l~eaGlP~gvv 168 (488)
T TIGR02518 95 EKKVIEIAVPVGVVAGLIPSTNPTSTAIYKTLISIKARNA---IVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAI 168 (488)
T ss_pred CcceEEEEecceEEEEEcccCChHHHHHHHHHHHHHcCCc---EEEECCccchHHHHHHHHHHHHHHHHcCcCcccE
Confidence 3456788999999999999999999999999999999999 99999999999999854 4558999998874
No 127
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=99.77 E-value=2.4e-18 Score=140.31 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=63.5
Q ss_pred ceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHH----hcCcccCCC
Q psy3661 36 HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLK----NQNQIQKCP 107 (109)
Q Consensus 36 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~----~ag~~~~~~ 107 (109)
...++.++|+|||++|+|||||+.+..+++++||++||+ ||+||||.+|.++..++++++ ++|.+.++-
T Consensus 100 ~~~~~~~~P~GVv~~I~pwn~P~~~~~~~~~~ALaaGN~---vVlKps~~a~~t~~~~~~l~~~~l~~aG~p~g~v 172 (862)
T PRK13805 100 FGIIEIAEPVGVIAGITPTTNPTSTAIFKALIALKTRNP---IIFSFHPRAQKSSIAAAKIVLDAAVAAGAPKDII 172 (862)
T ss_pred CCeEEEeecceEEEEEeCCCChhHHHHHHHHHHHHhCCc---EEEECCcchHHHHHHHHHHHHHHHHHcCcCcccE
Confidence 346788999999999999999999999999999999999 999999999999999999875 689888764
No 128
>KOG2455|consensus
Probab=99.64 E-value=4e-16 Score=117.80 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=85.2
Q ss_pred chHHH-HHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeec-eeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEE
Q psy3661 2 RGIGE-VQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVA 79 (109)
Q Consensus 2 ~a~~e-v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vv 79 (109)
||+.| ..+.++++|+++.++.++.+........+.+...+++|+ |.|++|+||||.....-...+||| |||+ |+
T Consensus 153 qAeiDa~~eLidf~R~na~ya~eL~~~qpi~~~~~t~ns~~yRpleGFVaAisPFnftAI~gnLa~aPaL-MGN~---VL 228 (561)
T KOG2455|consen 153 QAEIDAAAELIDFFRFNAKYASELYAQQPISQTKGTWNSMEYRPLEGFVAAISPFNFTAIGGNLAGAPAL-MGNV---VL 228 (561)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccCCCCcceeeccccceeEEecccceeeeccccccChhh-hcce---ee
Confidence 44444 567799999999999998876544334566778888898 999999999998877777788888 5999 99
Q ss_pred EecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 80 LVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 80 lKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
+|||..+.++.+.+.++|+|||+|.|-
T Consensus 229 wkPS~ta~lssYii~~il~EAGlP~Gv 255 (561)
T KOG2455|consen 229 WKPSDTAALSSYIIYRILREAGLPPGV 255 (561)
T ss_pred ecccchhHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999999999873
No 129
>cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.
Probab=99.59 E-value=2.5e-15 Score=114.59 Aligned_cols=63 Identities=22% Similarity=0.124 Sum_probs=59.0
Q ss_pred ceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhcCc
Q psy3661 36 HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQNQ 102 (109)
Q Consensus 36 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~ag~ 102 (109)
...+++++|+||+++|+|||||+ +.++++++||++||+ +|+|||+.+|.++..++++|.+++.
T Consensus 104 ~~~~~~~~P~Gvv~~I~p~N~P~-l~~~s~~~aLlaGN~---~ilKpS~~~p~~~~~l~~~l~~~~p 166 (422)
T cd07080 104 RGGYIRAQPRGLVVHIIAGNVPL-LPVWSIVRGLLVKNV---NLLKMSSSDPLTATALLRSLADVDP 166 (422)
T ss_pred CCCeeEEcCCceEEEEccCCccc-cHHHHHHHHHHhcCc---eEEECCCccchHHHHHHHHHHhcCC
Confidence 35578999999999999999999 799999999999999 9999999999999999999999854
No 130
>KOG2454|consensus
Probab=99.53 E-value=2.6e-14 Score=107.06 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCc-cCCC--CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEE
Q psy3661 4 IGEVQEVIDICDYAVGLSRTYSGSI-LPSE--RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 80 (109)
Q Consensus 4 ~~ev~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvl 80 (109)
.+|+-.+.+.+.|.....++.+..+ .+.. ......+++++|+||+++|.|||||+...+..++.||-+||. .|+
T Consensus 145 ~GEIlvTlEKI~Wtl~~Ger~L~P~~Rpn~~~~~yKg~~v~yePLGVI~aiVsWNYPfHN~lgPiiaAlFsGNa---IVv 221 (583)
T KOG2454|consen 145 LGEILVTLEKITWTLSEGERWLKPESRPNGRAMLYKGSRVEYEPLGVIGAIVSWNYPFHNILGPIIAALFSGNA---IVV 221 (583)
T ss_pred HhHHHHHHHHhhhhhhcchhhcCCcCCCchhheeeccceEEEeecceEEEeeecCCchhhhhhHHHHHHhcCCe---EEE
Confidence 4688888999999998888876542 2221 112245899999999999999999999999999999999999 999
Q ss_pred ecCCCchHHHHHHHHHHHhc
Q psy3661 81 VGVEVVPRWFQTLAKTLKNQ 100 (109)
Q Consensus 81 Kpse~tp~~~~~l~~~~~~a 100 (109)
|-||.+..+.....|++..+
T Consensus 222 K~SE~~~WS~~fy~e~ir~~ 241 (583)
T KOG2454|consen 222 KVSEHASWSGCFYFEIIRAA 241 (583)
T ss_pred EeecceeeehhhHHHHHHHH
Confidence 99999999998888877654
No 131
>KOG2453|consensus
Probab=99.44 E-value=9.5e-14 Score=102.55 Aligned_cols=95 Identities=58% Similarity=1.005 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEe
Q psy3661 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV 81 (109)
Q Consensus 2 ~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlK 81 (109)
|..+||++-+|.++|..+..+.+.+..+|.+.+++.....+.|+|+|++|+.||||-..--|.-.-||.+||. |++|
T Consensus 111 egvgevqeyvdicdyavglsr~l~g~i~pserpghalleqwnplg~vgvitafnfpcavygwnnaiaMv~gnc---VvWK 187 (507)
T KOG2453|consen 111 EGVGEVQEYVDICDYAVGLSRSLEGKIFPSERPGHALLEQWNPLGVVGVITAFNFPCAVYGWNNAIAMVCGNC---VVWK 187 (507)
T ss_pred hcchhHHHHHHHHHHhhhhhhhhCCcccCCCCCchhHHHhcCCcceEEEEEeccCCceeeccCchhhhhhcce---eEec
Confidence 3457999999999999999999999888887777777888999999999999999999999999999999999 9999
Q ss_pred cCCCchHHHHHHHHHHHh
Q psy3661 82 GVEVVPRWFQTLAKTLKN 99 (109)
Q Consensus 82 pse~tp~~~~~l~~~~~~ 99 (109)
|++.+|+++-..-+++.+
T Consensus 188 pApttpLtTiAvtklIae 205 (507)
T KOG2453|consen 188 PAPTTPLTTIAVTKLIAE 205 (507)
T ss_pred CCCCcceeHHHHHHHHHH
Confidence 999999998777666643
No 132
>KOG2452|consensus
Probab=99.39 E-value=2.9e-13 Score=103.84 Aligned_cols=66 Identities=30% Similarity=0.613 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCccCCCC--C-CceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhc
Q psy3661 6 EVQEVIDICDYAVGLSRTYSGSILPSER--P-GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPG 71 (109)
Q Consensus 6 ev~~~~~~~~~~a~~~~~~~~~~~~~~~--~-~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~a 71 (109)
.+..+++.+|||++|.+++.+..+|.++ + ...++++++|+|||+.|+|||||+++..||++..|++
T Consensus 522 hvgmsi~~~ryfagwcdkiqg~tipi~~arpn~nl~lt~~epigv~g~i~pwnyplmmlswk~aaclaa 590 (881)
T KOG2452|consen 522 HVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNYPLMMLSWKTAACLAA 590 (881)
T ss_pred hcCceehHHHHhhhhhhhccCceeccccCCCCCcceeeecCcceeEEEeccCCchHHHHHHHHHHHHHH
Confidence 4567789999999999999998776542 2 2356889999999999999999999999999998875
No 133
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=97.81 E-value=9e-05 Score=63.37 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=44.6
Q ss_pred CCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHH
Q psy3661 33 RPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWF 90 (109)
Q Consensus 33 ~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~ 90 (109)
..|..+.....|+|++++|+||| ......+..||++||+ |++||++.++-..
T Consensus 1067 PTGEsN~L~l~~RG~vlcisp~~---~~~l~Qi~AALaaGn~---vi~~~~~~~~~~~ 1118 (1208)
T PRK11905 1067 PTGESNLLSLHPRGRVLCVADTE---EALLRQLAAALATGNV---AVVAADSGLAAAL 1118 (1208)
T ss_pred CCCcceeEEecCCceEEEECCcH---HHHHHHHHHHHHhCCE---EEEeCCcccHHHH
Confidence 34567788999999999999999 4577799999999999 9999999977433
No 134
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=97.66 E-value=0.00011 Score=56.18 Aligned_cols=59 Identities=19% Similarity=0.019 Sum_probs=52.6
Q ss_pred eeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhc
Q psy3661 38 LLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQ 100 (109)
Q Consensus 38 ~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~a 100 (109)
.+..+.|.|++.+|.|-|-|.. .+..++-+|++||. .|+|.|...+.....|.+.|.+.
T Consensus 81 ~~~~~~p~g~v~Hi~agNvp~~-~~~S~~~~lL~gn~---nivK~ss~d~~~~~~l~~~l~~~ 139 (399)
T PF05893_consen 81 GYVRAFPRGLVFHIAAGNVPLV-GFYSLVRGLLSGNA---NIVKLSSRDPFLAPALLRSLAEI 139 (399)
T ss_pred chhhccCCceEEEEcCCCccch-HHHHHHHHHHhCCc---eEEECCCCchhHHHHHHHHHHhh
Confidence 5678999999999999999984 45568889999999 99999999999999999999764
No 135
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0076 Score=46.14 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHH----hcCcccCCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLK----NQNQIQKCPK 108 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~----~ag~~~~~~~ 108 (109)
.+...+..+.|+||++.|-= .+|- ...--..-+|-+||+ ||+|.+..+-.+...++++++ ++|+|..|..
T Consensus 104 nGL~i~~~rvPLGVigvIYE-sRPn-VtvdaaaLclKsGNA---vILRGGsea~~Sn~ai~~~i~~aL~~~~lP~~aVq 177 (417)
T COG0014 104 NGLQIYRVRVPLGVIGVIYE-SRPN-VTVDAAALCLKSGNA---VILRGGSEAIHSNAAIVEVIQEALEKAGLPADAVQ 177 (417)
T ss_pred CCCEEEEEEccceEEEEEEe-cCCc-cHHHHHHHHHhcCCE---EEEeCcHHHhhhHHHHHHHHHHHHHHcCCCHHHhh
Confidence 35567888999999999941 1221 233344558889999 999999999999988888775 5787776643
No 136
>KOG4165|consensus
Probab=84.45 E-value=11 Score=28.94 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=46.1
Q ss_pred CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhcC
Q psy3661 34 PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQN 101 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~ag 101 (109)
++...+....|+||-++|-= .-|-.+ ..-..-|++.||. +++|.-..+..+...|.++.++|=
T Consensus 101 dgL~L~qvt~PiGvLLVIFE-SRPd~l-~qiasLAi~SgN~---llLKGGkEa~~Sn~~L~~~v~~al 163 (433)
T KOG4165|consen 101 DGLELEQVTVPIGVLLVIFE-SRPDCL-PQIASLAIASGNG---LLLKGGKEAAHSNAALHKLVQEAL 163 (433)
T ss_pred CCceEEEeeccceEEEEEec-cCchHH-HHHHHHHHhcCCe---EeecCchhhhhhHHHHHHHHHHHh
Confidence 35556778899999888842 122211 1234458899999 999999999999999999887753
No 137
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=81.38 E-value=9.1 Score=34.08 Aligned_cols=47 Identities=11% Similarity=-0.195 Sum_probs=37.4
Q ss_pred CCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCc
Q psy3661 34 PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVV 86 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~t 86 (109)
.|..+.....|+|+|+++.+= -.-....+..++++||. +|+..++..
T Consensus 1177 TGE~N~l~l~pRg~vLcl~~~---~~~~~~Ql~Aala~Gn~---~v~~~~~~~ 1223 (1318)
T PRK11809 1177 TGERNTYTLLPRERVLCLADT---EQDALTQLAAVLAVGSQ---ALWPDDALH 1223 (1318)
T ss_pred CCCcceeeccCCCcEEEeCCC---HHHHHHHHHHHHHhCCE---EEEeCCchh
Confidence 355678889999999999872 22567789999999999 998866553
No 138
>PRK13769 histidinol dehydrogenase; Provisional
Probab=80.81 E-value=18 Score=27.82 Aligned_cols=64 Identities=9% Similarity=-0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccchhHHHHHHHHHHHHhcCCC
Q psy3661 7 VQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 7 v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~pAL~aGNt 74 (109)
+..+.+.++.|........... ..++...-.++.|+-.|++..|.-||. ..++..+||-.+|+.
T Consensus 59 i~~a~~~I~~fh~~q~~~~~~~---~~~Gv~~g~~~~Pi~rvG~YVPa~~pS-tvLM~~iPAkvAGV~ 122 (368)
T PRK13769 59 ALEAAKSLEALYSRLKPPEAVD---FYGGVLRSVFWKPVRRAALYVPARYVS-TLVMLAVPARAAGVE 122 (368)
T ss_pred HHHHHHHHHHHHHHhCCCCeEe---cCCCeEEEEEEeeeeeeEEEeccchHH-HHHHhhccHhhcCCC
Confidence 4555666666654432211111 124556677899999999999954443 333457899999996
No 139
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=79.28 E-value=21 Score=27.90 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCceeeEeeeeceeEEEEccc---chhHHHHHHHHHHHHhcCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAF---NFPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~Pw---N~P~~~~~~k~~pAL~aGNt 74 (109)
++...-.++.|+.-|++..|- -||.... +..+||-.+|..
T Consensus 96 ~G~~~g~~~~Pi~rvG~YVPGG~a~~pStvl-M~aiPA~vAGV~ 138 (412)
T PF00815_consen 96 PGVILGQRYRPIERVGLYVPGGRAPYPSTVL-MTAIPAKVAGVK 138 (412)
T ss_dssp TTEEEEEEEEE-SEEEEE---SSS--THHHH-HHHHHHHHHT-S
T ss_pred CCcEEEEEEEEhhheEEEccCCCCCccHHHH-HcccchhhcCCC
Confidence 355667789999999999994 4554444 457889999986
No 140
>COG4996 Predicted phosphatase [General function prediction only]
Probab=67.59 E-value=13 Score=24.74 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=27.7
Q ss_pred eceeEEEEcccchhHH-HHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHH
Q psy3661 44 PLGVVGIISAFNFPVA-VYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLK 98 (109)
Q Consensus 44 P~GVv~~I~PwN~P~~-~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~ 98 (109)
--|-+....+||||.- +-......++.-=.- .|+||. |.-...|.+++.
T Consensus 55 nsG~i~~~~sWN~~~kA~~aLral~~~~yFhy---~ViePh---P~K~~ML~~llr 104 (164)
T COG4996 55 NSGYILGLASWNFEDKAIKALRALDLLQYFHY---IVIEPH---PYKFLMLSQLLR 104 (164)
T ss_pred hCCcEEEEeecCchHHHHHHHHHhchhhhEEE---EEecCC---ChhHHHHHHHHH
Confidence 4588888899999972 222222222222233 588998 455555555553
No 141
>PLN02926 histidinol dehydrogenase
Probab=57.70 E-value=82 Score=24.83 Aligned_cols=66 Identities=15% Similarity=0.014 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhhhcCCccCCCCCCceeeEeeeeceeEEEEcccc---hhHHHHHHHHHHHHhcCCC
Q psy3661 7 VQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFN---FPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 7 v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN---~P~~~~~~k~~pAL~aGNt 74 (109)
++.+.+.++.|............ ...++...-.++.|+.-|++..|.- ||.... +..+||-.+|+.
T Consensus 84 i~~A~~nI~~fh~~q~~~~~~~~-~~~~Gv~~g~~~~Pi~rvG~YVPGG~a~ypStvL-M~aiPAkvAGV~ 152 (431)
T PLN02926 84 FDVAYDNIYAFHLAQKSTEKLEV-ETMPGVRCRRVARPIGAVGLYVPGGTAVLPSTAL-MLAVPAQIAGCK 152 (431)
T ss_pred HHHHHHHHHHHHHHhCCCCcceE-ecCCCeEEEEEEechHHeeEeccCCCCCccHHHH-HhhcchhhcCCC
Confidence 44555556555543221111011 1124556677899999999999983 554433 457889999985
No 142
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=55.16 E-value=1e+02 Score=24.27 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=29.7
Q ss_pred CCceeeEeeeeceeEEEEccc---chhHHHHHHHHHHHHhcCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAF---NFPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~Pw---N~P~~~~~~k~~pAL~aGNt 74 (109)
++...-.++.|+.-|++..|- -||.... +..+||-.+|+.
T Consensus 105 ~Gv~~g~~~~Pl~rvG~YVPGG~a~ypStvL-M~aiPAkvAGV~ 147 (426)
T PRK12447 105 PGVILGHRNIPVNSVGCYVPGGRYPLVASAH-MSVLTAKVAGVK 147 (426)
T ss_pred CCeEEEEEEeehheEEEEeCCCCCcchHHHH-HhhcchhhcCCC
Confidence 455566789999999999997 3444333 357889999996
No 143
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=49.85 E-value=22 Score=26.57 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=31.7
Q ss_pred eeEeeeeceeEEEEcccchhHHHH----HHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHH
Q psy3661 38 LLENWNPLGVVGIISAFNFPVAVY----GWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTL 97 (109)
Q Consensus 38 ~~~~~~P~GVv~~I~PwN~P~~~~----~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~ 97 (109)
+..-..|.+.-..-.|+||||.-. +..++..+..|+. ..+|.-.+....+.
T Consensus 53 s~sP~kP~~SR~V~~PyNYpFSD~ip~~vtDLi~~i~~g~~---------~ltP~~Gq~q~~~~ 107 (321)
T PF09129_consen 53 SVSPTKPLLSREVTGPYNYPFSDNIPEPVTDLIGQIVAGNP---------GLTPLFGQTQYAIT 107 (321)
T ss_dssp EE-SS--TTSEE-SSS---HHHHS--HHHHHHHHHHHTT-G---------GGHHHHHHHHHHHH
T ss_pred ccCCCCCCcccccCCCCCCCccccccHHHHHHHHHHHcCCc---------cccchhhHHHHHHH
Confidence 344457888888889999999743 4677888888988 78888877666543
No 144
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=49.72 E-value=8.5 Score=28.17 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=14.1
Q ss_pred cEEEecCCCchHHHHHHHHHHHhcCc
Q psy3661 77 QVALVGVEVVPRWFQTLAKTLKNQNQ 102 (109)
Q Consensus 77 ~vvlKpse~tp~~~~~l~~~~~~ag~ 102 (109)
|||+|||+...- .+..+-++..|+
T Consensus 77 QViiKPsP~niQ--elYL~SL~~lGi 100 (279)
T cd00733 77 QVIIKPSPDNIQ--ELYLESLEALGI 100 (279)
T ss_pred EEEECCCCccHH--HHHHHHHHHhCC
Confidence 699999986532 223334454444
No 145
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=49.17 E-value=1.2e+02 Score=23.67 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCceeeEeeeeceeEEEEcccc---hhHHHHHHHHHHHHhcCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAFN---FPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~PwN---~P~~~~~~k~~pAL~aGNt 74 (109)
++...-.++.|+.-|++..|.- ||....| ..+||-.+|+.
T Consensus 78 ~Gv~~g~~~~Pi~rvGlYVPGG~a~~pStvLM-~aiPAkvAGV~ 120 (393)
T TIGR00069 78 PGVILGQRVRPLERVGLYVPGGRAPYPSTVLM-TAIPAKVAGVK 120 (393)
T ss_pred CCeEEEEEEEEeheEEEEeCCCCCcchHHHHH-hhcchhhcCCC
Confidence 4556677899999999999983 5544443 46788889996
No 146
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=49.06 E-value=91 Score=24.55 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCceeeEeeeeceeEEEEccc---chhHHHHHHHHHHHHhcCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAF---NFPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~Pw---N~P~~~~~~k~~pAL~aGNt 74 (109)
++...-.++.|+--|++..|. -||.... +..+||-.+|+.
T Consensus 110 ~Gv~~g~~~~Pi~~vG~YVPGG~a~ypStvL-M~aiPAkvAGV~ 152 (425)
T PRK00877 110 PGVRLGQRWRPIERVGLYVPGGKAAYPSSVL-MNAIPAKVAGVK 152 (425)
T ss_pred CCeEEEEEEEehHHeEEEccCCCCCchHHHH-HhhcchhhcCCC
Confidence 455556789999999999998 3555444 357889999996
No 147
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=49.05 E-value=8.8 Score=28.15 Aligned_cols=11 Identities=27% Similarity=-0.094 Sum_probs=9.0
Q ss_pred cEEEecCCCch
Q psy3661 77 QVALVGVEVVP 87 (109)
Q Consensus 77 ~vvlKpse~tp 87 (109)
|||+|||+...
T Consensus 81 QVilKPsP~ni 91 (283)
T PRK09348 81 QVILKPSPDNI 91 (283)
T ss_pred EEEEcCCCccH
Confidence 69999998754
No 148
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=48.09 E-value=9.3 Score=28.16 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=14.0
Q ss_pred cEEEecCCCchHHHHHHHHHHHhcCc
Q psy3661 77 QVALVGVEVVPRWFQTLAKTLKNQNQ 102 (109)
Q Consensus 77 ~vvlKpse~tp~~~~~l~~~~~~ag~ 102 (109)
|||+|||+...- .+..+-++..|.
T Consensus 78 QVilKPsP~niQ--elYL~SL~~lGi 101 (293)
T TIGR00388 78 QVVIKPSPDNIQ--ELYLDSLRALGI 101 (293)
T ss_pred EEEECCCCccHH--HHHHHHHHHhCC
Confidence 699999987543 222333444444
No 149
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=47.32 E-value=10 Score=27.96 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=12.1
Q ss_pred cEEEecCCCchHHHHHHHHHHHhcCc
Q psy3661 77 QVALVGVEVVPRWFQTLAKTLKNQNQ 102 (109)
Q Consensus 77 ~vvlKpse~tp~~~~~l~~~~~~ag~ 102 (109)
|||+|||+...- .+-.+-++..|+
T Consensus 76 QVilKPsP~niq--~lYL~SL~~lGI 99 (284)
T PF02091_consen 76 QVILKPSPDNIQ--ELYLESLEALGI 99 (284)
T ss_dssp EEEEES--TTHH--HHHHHHHHHCT-
T ss_pred EEEEcCCCccHH--HHHHHHHHHhCC
Confidence 699999987543 223344555544
No 150
>PRK13770 histidinol dehydrogenase; Provisional
Probab=45.30 E-value=1.4e+02 Score=23.53 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCceeeEeeeeceeEEEEcccc---hhHHHHHHHHHHHHhcCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAFN---FPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~PwN---~P~~~~~~k~~pAL~aGNt 74 (109)
++...-.++.|+--|++..|-- ||.... +..+||-.+|+.
T Consensus 100 ~gv~~g~~~~Pi~rvGlYVPGG~a~ypStvL-M~aiPAkvAGV~ 142 (416)
T PRK13770 100 ESVECYEIYHPLESVGIYVPGGKASYPSTVL-MTATLAQVAGVE 142 (416)
T ss_pred CCcEEEEEEeeeeeeEEEccCCCCCccHHHH-HhhccHhhcCCC
Confidence 3445567889999999999973 444333 457899999996
No 151
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=43.52 E-value=1.2e+02 Score=23.64 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=29.9
Q ss_pred CCceeeEeeeeceeEEEEcccc---hhHHHHHHHHHHHHhcCCC
Q psy3661 34 PGHVLLENWNPLGVVGIISAFN---FPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 34 ~~~~~~~~~~P~GVv~~I~PwN---~P~~~~~~k~~pAL~aGNt 74 (109)
++...-.++.|+.-|++..|-- ||.... +..+||-.+|+.
T Consensus 82 ~G~~~g~~~~Pi~~vG~YVPGG~a~ypStvL-M~aiPAkvAGV~ 124 (390)
T cd06572 82 PGVVLGQRYRPIERVGLYVPGGTAPYPSTVL-MLAIPAKVAGVK 124 (390)
T ss_pred CCcEEEEEEEehhEEEEEecCCCCcchHHHH-HhhcchhhcCCC
Confidence 4566677899999999999975 444333 356888889985
No 152
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=43.10 E-value=12 Score=27.35 Aligned_cols=12 Identities=17% Similarity=-0.078 Sum_probs=9.4
Q ss_pred cEEEecCCCchH
Q psy3661 77 QVALVGVEVVPR 88 (109)
Q Consensus 77 ~vvlKpse~tp~ 88 (109)
|||+|||+..-.
T Consensus 82 QVilKPsP~NiQ 93 (298)
T COG0752 82 QVIIKPSPDNIQ 93 (298)
T ss_pred EEEecCCCccHH
Confidence 599999987543
No 153
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=39.19 E-value=1.9e+02 Score=22.80 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=31.2
Q ss_pred CCCceeeEeeeeceeEEEEcc---cchhHHHHHHHHHHHHhcCCC
Q psy3661 33 RPGHVLLENWNPLGVVGIISA---FNFPVAVYGWNAAIALPGWQV 74 (109)
Q Consensus 33 ~~~~~~~~~~~P~GVv~~I~P---wN~P~~~~~~k~~pAL~aGNt 74 (109)
.++...-.++.|+--|+...| --||...+| ..+||-.+|+.
T Consensus 105 ~~Gv~~g~~~~Pi~~VGlYVPGG~A~ypStvLM-~avPAkvAGv~ 148 (425)
T COG0141 105 EPGVVLGQRWRPIERVGLYVPGGKAAYPSTVLM-NAVPAKVAGVE 148 (425)
T ss_pred cCCcEEEEEEEEhhheEEEccCCCcCChHHHHH-hhccHhhcCCc
Confidence 346666778999999999999 566665554 46788888995
No 154
>KOG3768|consensus
Probab=38.45 E-value=26 Score=28.98 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=19.8
Q ss_pred eeeEeeeec--eeEEEEcccchhHHHHHH
Q psy3661 37 VLLENWNPL--GVVGIISAFNFPVAVYGW 63 (109)
Q Consensus 37 ~~~~~~~P~--GVv~~I~PwN~P~~~~~~ 63 (109)
+.+....+. ||.+.+-|+|||+++...
T Consensus 368 FGyLka~t~~t~V~L~vmpyNyP~Llpll 396 (888)
T KOG3768|consen 368 FGYLKANTLGTGVTLIVMPYNYPMLLPLL 396 (888)
T ss_pred cceeeeccCcCceEEEEecccchHHHHHH
Confidence 344555555 788999999999987653
No 155
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=37.14 E-value=26 Score=22.83 Aligned_cols=10 Identities=10% Similarity=0.557 Sum_probs=7.7
Q ss_pred cccchhHHHH
Q psy3661 52 SAFNFPVAVY 61 (109)
Q Consensus 52 ~PwN~P~~~~ 61 (109)
+||||.++..
T Consensus 33 tpWNysiL~L 42 (125)
T PF15048_consen 33 TPWNYSILAL 42 (125)
T ss_pred CCcchHHHHH
Confidence 7999997533
No 156
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=31.90 E-value=36 Score=21.34 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=27.1
Q ss_pred eeEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhcCc
Q psy3661 46 GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQNQ 102 (109)
Q Consensus 46 GVv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~ag~ 102 (109)
+..+.|...|.|. ||+ +||+..-..+..+.++++-.|.
T Consensus 59 ~A~~vil~HNHPs-------------G~~------~PS~~D~~~T~~l~~~~~~l~i 96 (113)
T cd08071 59 NAAAIILAHNHPS-------------GDP------TPSREDIELTKRLKEAGELLGI 96 (113)
T ss_pred hhheEEEEeeCCC-------------CCC------CCCHHHHHHHHHHHHHHHHCCC
Confidence 4445555555554 677 9998888888888888876664
No 157
>PTZ00158 40S ribosomal protein S15A; Provisional
Probab=31.40 E-value=1.5e+02 Score=19.30 Aligned_cols=44 Identities=9% Similarity=-0.021 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEe-cCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 57 PVAVYGWNAAIALPGWQVLGQVALV-GVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 57 P~~~~~~k~~pAL~aGNt~~~vvlK-pse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+.-++..+=.|-.++.. .|.- |+ ......+++++++-|++.++
T Consensus 6 ~iadmlt~IrNa~~~~~~---~V~v~p~---Skl~~~il~IL~~eGyI~~~ 50 (130)
T PTZ00158 6 VLADCLRSIVNAEKQGKR---QVLIRPS---SKVVVKFLQVMQKHGYIGEF 50 (130)
T ss_pred HHHHHHHhhhhHHhCCCC---eEEEeCC---cHHHHHHHHHHHHCCcccce
Confidence 778888888899999998 7764 87 45667889999999998764
No 158
>PRK00136 rpsH 30S ribosomal protein S8; Validated
Probab=27.25 E-value=1.8e+02 Score=18.74 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 56 FPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 56 ~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
-|+.-++..+=.|..+|.. .|.-|+ ......++++|.+.|++++.
T Consensus 4 d~i~d~lt~IrNa~~~~~~---~v~ip~---sk~~~~il~iL~~eGyI~~~ 48 (130)
T PRK00136 4 DPIADMLTRIRNAQMAKHE---TVSMPA---SKLKVAIAEILKEEGYIKDY 48 (130)
T ss_pred ChHHHHHHHHHHHHHcCCC---eEEecc---cHHHHHHHHHHHHCCcccce
Confidence 4677778888889999998 777766 45667889999999998864
No 159
>TIGR03065 srtB_sig_QVPTGV sortase B signal domain, QVPTGV class. This model represents a boutique (unusual) sorting signal, recognized by a member of the sortase SrtB family rather than by the housekeeping sortase, SrtA.
Probab=25.53 E-value=43 Score=16.19 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=9.8
Q ss_pred eeceeEEEEccc
Q psy3661 43 NPLGVVGIISAF 54 (109)
Q Consensus 43 ~P~GVv~~I~Pw 54 (109)
.|-||++.+.||
T Consensus 2 vptgv~gtlapf 13 (32)
T TIGR03065 2 VPTGVAGTLAPF 13 (32)
T ss_pred Cccceeeeeccc
Confidence 367899998887
No 160
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=25.45 E-value=2.4e+02 Score=22.45 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=21.8
Q ss_pred eEEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCch
Q psy3661 47 VVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVP 87 (109)
Q Consensus 47 Vv~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp 87 (109)
++....|+.+-+.. ...+..+|.+|.+ +++-+...++
T Consensus 254 ~~l~~lPl~h~~g~-~~~~~~~l~~G~~---v~~~~~~~~~ 290 (614)
T PRK08180 254 VLVDWLPWNHTFGG-NHNLGIVLYNGGT---LYIDDGKPTP 290 (614)
T ss_pred EEEEecchHHHhhH-HHHHHHHHhcCCE---EEEeCCCccc
Confidence 44455566544433 2345678889999 8885543333
No 161
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.85 E-value=49 Score=26.31 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=30.6
Q ss_pred EEEEcccchhHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHH
Q psy3661 48 VGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLA 94 (109)
Q Consensus 48 v~~I~PwN~P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~ 94 (109)
++.=...|||+.... +...+.+|-+ ||+-|++..-.+.-++.
T Consensus 235 ~~LP~AHNfplssPG--~LGv~~agG~---VVla~~psp~~~F~lIe 276 (542)
T COG1021 235 CALPAAHNFPLSSPG--ALGVFLAGGT---VVLAPDPSPELCFPLIE 276 (542)
T ss_pred EecccccCCCCCCcc--hhheeeeccE---EEECCCCCHHHHHHHHH
Confidence 334457899987664 5667889999 99999987766665544
No 162
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=24.56 E-value=39 Score=11.83 Aligned_cols=7 Identities=43% Similarity=1.027 Sum_probs=4.4
Q ss_pred cccCCCC
Q psy3661 102 QIQKCPK 108 (109)
Q Consensus 102 ~~~~~~~ 108 (109)
.++.||.
T Consensus 2 ~i~nCP~ 8 (9)
T PF00220_consen 2 YIRNCPI 8 (9)
T ss_pred ccccCCC
Confidence 3567874
No 163
>CHL00042 rps8 ribosomal protein S8
Probab=23.79 E-value=2.1e+02 Score=18.48 Aligned_cols=44 Identities=11% Similarity=-0.066 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhcCcccCC
Q psy3661 57 PVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106 (109)
Q Consensus 57 P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~ag~~~~~ 106 (109)
|+.-++..+=.|..+|.. .|.-|+ ......++++|.+.|++++.
T Consensus 5 ~iad~lt~IrNa~~a~~~---~v~ip~---Skl~~~il~iL~~eGyI~~~ 48 (132)
T CHL00042 5 TIADMLTRIRNANMVKKG---TVRIPA---TNITENIVKILLREGFIENV 48 (132)
T ss_pred hHHHHHHHhHHHHHCCCC---EEEEec---cHHHHHHHHHHHHCCcccce
Confidence 666777788889999998 776676 45567888999999998764
No 164
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=23.56 E-value=1.1e+02 Score=22.73 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=22.5
Q ss_pred cCCCCCcEEEecC-----------CCchHHHHHHHHHHHhcCc
Q psy3661 71 GWQVLGQVALVGV-----------EVVPRWFQTLAKTLKNQNQ 102 (109)
Q Consensus 71 aGNt~~~vvlKps-----------e~tp~~~~~l~~~~~~ag~ 102 (109)
-||+ |.+||. ...|-+-..+++.++|+|.
T Consensus 36 ~G~~---VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ 75 (293)
T COG2006 36 PGDR---VLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGG 75 (293)
T ss_pred CCCE---EEecCccccCCCCCCCCccCHHHHHHHHHHHHHhCC
Confidence 4899 999986 2346777888999998874
No 165
>PF00410 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR000630 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S8 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S8 is known to bind directly to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups eubacterial, algal and plant chloroplast, cyanelle, archaebacterial and Marchantia polymorpha mitochondrial S8; mammalian and plant S15A; and yeast S22 (S24) ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_H 3O30_O 3O2Z_O 3IZB_H 3U5G_W 3U5C_W 3OTO_H 1AN7_A 2HGR_K 3BBN_H ....
Probab=23.01 E-value=2.1e+02 Score=18.20 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHHHHHHHHHhcCcccC
Q psy3661 57 PVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLKNQNQIQK 105 (109)
Q Consensus 57 P~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~~l~~~~~~ag~~~~ 105 (109)
|+.-++..+=.|..++.. .|.-|+ .-....+.++|.+.|.+++
T Consensus 2 ~lad~l~~I~Na~~~~~~---~v~ip~---sk~~~~il~iL~~eGyI~~ 44 (129)
T PF00410_consen 2 PLADLLTRIRNASRARKR---FVIIPY---SKLNLSILKILKKEGYISG 44 (129)
T ss_dssp HHHHHHHHHHHHHHTTCS---EEEEEH---CHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHhHHHHHCCCC---EEEecc---cHHHHHHHHHHhhccccce
Confidence 456667778888999998 666565 4556788899999998765
No 166
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=2e+02 Score=22.66 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhcC-----CCCCcEEEecCCCchHH----HHHHHHHHHhcCccc
Q psy3661 56 FPVAVYGWNAAIALPGW-----QVLGQVALVGVEVVPRW----FQTLAKTLKNQNQIQ 104 (109)
Q Consensus 56 ~P~~~~~~k~~pAL~aG-----Nt~~~vvlKpse~tp~~----~~~l~~~~~~ag~~~ 104 (109)
+|..+..+.++-++-.| |. .++-+++..|-- ..++-++++++|+.|
T Consensus 50 ~P~~ltiG~lid~~~~g~~d~~n~---~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~ 104 (420)
T COG3581 50 LPAILTIGQLIDAIESGEYDIEND---AVLMTQTGGPCRFGNYIELLRKALKDAGFRD 104 (420)
T ss_pred chhhhhHHHHHHHHHhCCcccccc---EEEEecCCCCcchhhHHHHHHHHHHHcCCCC
Confidence 78999999999999999 88 888888665533 357788889999765
No 167
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3
Probab=20.71 E-value=33 Score=20.61 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=7.4
Q ss_pred EEcccchhHH
Q psy3661 50 IISAFNFPVA 59 (109)
Q Consensus 50 ~I~PwN~P~~ 59 (109)
.-+|+|||+-
T Consensus 47 ~atPynYPvP 56 (84)
T PF14987_consen 47 QATPYNYPVP 56 (84)
T ss_pred CCCCccCccc
Confidence 3489999963
No 168
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.06 E-value=1.7e+02 Score=19.84 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEecCCCchHHHH-HHHHHHHhcCc
Q psy3661 58 VAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQ-TLAKTLKNQNQ 102 (109)
Q Consensus 58 ~~~~~~k~~pAL~aGNt~~~vvlKpse~tp~~~~-~l~~~~~~ag~ 102 (109)
+......+.+.+.-|.. ||+| |...|-++. .+..++++.+.
T Consensus 99 v~~a~~~i~~~l~~~~l---vV~~-STvppGtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 99 VESAIESIAPVLRPGDL---VVIE-STVPPGTTEELLKPILEKRSG 140 (185)
T ss_dssp HHHHHHHHHHHHCSCEE---EEES-SSSSTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhcce---EEEc-cEEEEeeehHhhhhhhhhhcc
Confidence 34445566666655455 5555 778888887 77788887664
Done!