RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3661
(109 letters)
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 154 bits (392), Expect = 2e-46
Identities = 51/67 (76%), Positives = 60/67 (89%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
G+GEVQE+IDICD+AVGLSR G +PSERPGH ++E WNPLGVVG+I+AFNFPVAV+G
Sbjct: 91 GLGEVQEMIDICDFAVGLSRQLYGLTIPSERPGHRMMEQWNPLGVVGVITAFNFPVAVWG 150
Query: 63 WNAAIAL 69
WNAAIAL
Sbjct: 151 WNAAIAL 157
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 144 bits (365), Expect = 2e-42
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
G+GEVQE+IDICDYAVGLSR G +PSERPGH L+E WNPLGVVG+I+AFNFPVAV G
Sbjct: 92 GLGEVQEMIDICDYAVGLSRMLYGLTIPSERPGHRLMEQWNPLGVVGVITAFNFPVAVPG 151
Query: 63 WNAAIAL 69
WNAAIAL
Sbjct: 152 WNAAIAL 158
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 127 bits (320), Expect = 6e-36
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
GIGEVQE+ID+CD+AVGLSR +GSI+PSERP H+++E WNPLG+VG+I+AFNFP AV G
Sbjct: 113 GIGEVQEIIDMCDFAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLG 172
Query: 63 WNAAIAL 69
WNA IAL
Sbjct: 173 WNACIAL 179
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 72.6 bits (179), Expect = 2e-16
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
+GEV D Y GL+R G ++PS PG + + PLGVVG I+ +NFP+ +
Sbjct: 55 ALGEVARAADTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAA 114
Query: 63 WNAAIAL 69
W A AL
Sbjct: 115 WKLAPAL 121
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 71.1 bits (175), Expect = 7e-16
Identities = 29/68 (42%), Positives = 36/68 (52%)
Query: 2 RGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVY 61
+GEV ID YA GL+ G LPS PG PLGVVG+I+ +NFP+ +
Sbjct: 50 EALGEVARAIDTFRYAAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLA 109
Query: 62 GWNAAIAL 69
W A AL
Sbjct: 110 AWKLAPAL 117
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 67.9 bits (167), Expect = 9e-15
Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
GEV ID Y GL+R G LPS PG + PLGVVG I+ +NFP+ + W
Sbjct: 88 GEVPRAIDTLRYYAGLARKLEGETLPS-DPGVLAYTRREPLGVVGAITPWNFPLLLAAWK 146
Query: 65 AAIAL 69
A AL
Sbjct: 147 IAPAL 151
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 67.4 bits (165), Expect = 2e-14
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
G G+VQE ID+ YA G R G +PSE P + P+GVV +I+ +NFPVA+
Sbjct: 94 GRGDVQEAIDMAQYAAGEGRRLFGETVPSELPNKDAMTRRQPIGVVALITPWNFPVAIPS 153
Query: 63 WNAAIAL 69
W AL
Sbjct: 154 WKIFPAL 160
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 65.3 bits (160), Expect = 8e-14
Identities = 29/67 (43%), Positives = 36/67 (53%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
GEV I Y G + SG LPS RPG + PLGVVG+I+ +NFP+A+
Sbjct: 94 ARGEVTRAGQIFRYYAGEALRLSGETLPSTRPGVEVETTREPLGVVGLITPWNFPIAIPA 153
Query: 63 WNAAIAL 69
W A AL
Sbjct: 154 WKIAPAL 160
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 62.7 bits (153), Expect = 7e-13
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
EV+ D DY +R G I+PS+RP + P+GVV I +NFP +
Sbjct: 94 VEVEFTADYIDYMAEWARRIEGEIIPSDRPNENIFIFKVPIGVVAGILPWNFPFFLIARK 153
Query: 65 AAIAL 69
A AL
Sbjct: 154 LAPAL 158
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 58.5 bits (142), Expect = 2e-11
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
GE+ D Y +R G +P G L PLGVVG I+ +NFP+A+
Sbjct: 93 ARGEIARAADFIRYYAEEARRLEGETIP-TDKGSKALVRREPLGVVGAITPWNFPLALAA 151
Query: 63 WNAAIALPG 71
W A AL
Sbjct: 152 WKLAPALAA 160
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 53.7 bits (130), Expect = 9e-10
Identities = 27/54 (50%), Positives = 31/54 (57%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 58
EV I I A GL R G ILPS+ PG + PLGVVG+IS FNFP+
Sbjct: 59 FEVGAAIAILREAAGLPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPL 112
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 48.8 bits (117), Expect = 6e-08
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1 MRGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 58
+ EV I A GL G ILPS PG + L PLGVVG+IS FNFP+
Sbjct: 68 PKAGFEVGAAIGELHEAAGLPTQPQGEILPSA-PGRLSLARRVPLGVVGVISPFNFPL 124
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 47.1 bits (113), Expect = 2e-07
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
G+V +++ ++A + G L + G PLGVV I+ FNFP + W
Sbjct: 97 GDVLRGLEVVEFACSIPHLLKGEYLENVARGIDTYSYRQPLGVVAGITPFNFPAMIPLWM 156
Query: 65 AAIAL 69
+A+
Sbjct: 157 FPMAI 161
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 45.4 bits (108), Expect = 8e-07
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 58
E ++ A G R G LPS+ PG V + PLGVV I+ FN+P+
Sbjct: 80 FETTFTPELLRAAAGECRRVRGETLPSDSPGTVSMSVRRPLGVVAGITPFNYPL 133
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 44.5 bits (106), Expect = 2e-06
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAV 60
+V E ID +Y G + + PLGV +IS +NFP+A+
Sbjct: 127 DADVAEAIDFLEYYAREMLRLRGFPVEMVPGEDNRYV-YRPLGVGAVISPWNFPLAI 182
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 42.7 bits (101), Expect = 7e-06
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 1 MRGIGEVQEVIDICDYAVGLSRTYSGSILPSERPG---HVLLENWNPLGVVGIISAFNFP 57
++ E + I A G ILPS+ PG V E PLGVVG+IS +NFP
Sbjct: 87 IKANIEWGAAMAITREAATFPLRMEGRILPSDVPGKENRVYRE---PLGVVGVISPWNFP 143
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 42.4 bits (100), Expect = 8e-06
Identities = 24/64 (37%), Positives = 30/64 (46%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNA 65
EV D DY +R Y G I+ S+RPG +L LGV I +NFP +
Sbjct: 33 EVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKM 92
Query: 66 AIAL 69
A AL
Sbjct: 93 APAL 96
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 41.4 bits (98), Expect = 2e-05
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 15 DYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
Y GL+ G+++P ++ ++ PLGVV I+ +N P+ + A AL
Sbjct: 90 RYYAGLADKIEGAVIPVDKGDYLNFTRREPLGVVAAITPWNSPLLLLAKKLAPAL 144
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 41.2 bits (97), Expect = 2e-05
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 5 GEVQEVIDICDYAVGLSRTYSG---SILPSERPGHVLLENWNPLGVVGIISAFNFP 57
GE++ D+ YA L+RT G + L + G VL E P+GVVGII+ +NFP
Sbjct: 80 GEIEGAADLWRYAASLARTLHGDSYNNLGDDMLGLVLRE---PIGVVGIITPWNFP 132
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
R Y G +PS PG +L P+GVV I+ +NFP A
Sbjct: 96 RIY-GRTIPSPAPGKRILVIKQPVGVVAAITPWNFPAA 132
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 40.4 bits (94), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNA 65
E+ ++D+ + G +R SG GH + +PLGVV I+ +N+P+ + W
Sbjct: 99 EIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKL 158
Query: 66 AIAL 69
A AL
Sbjct: 159 APAL 162
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 39.6 bits (93), Expect = 1e-04
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
E+ I Y GL+RT +G ++ E PG L P+GV GII +N PV + +
Sbjct: 79 FEISGAISELRYYAGLARTEAGRMIEPE-PGSFSLVLREPMGVAGIIVPWNSPVVLLVRS 137
Query: 65 AAIAL-PGWQVL----GQVALVGVEV 85
A AL G V+ GQ A + +
Sbjct: 138 LAPALAAGCTVVVKPAGQTAQINAAI 163
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 38.7 bits (90), Expect = 2e-04
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 3 GIGEVQEVIDICDY-AVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVY 61
I +V E ID Y A R ++ PG + LG +IS +NFPVA++
Sbjct: 112 AIDDVAEAIDFIRYYARAALRLRYPAVEVVPYPGEDNESFYVGLGAGVVISPWNFPVAIF 171
Query: 62 G 62
Sbjct: 172 T 172
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 38.7 bits (91), Expect = 2e-04
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 27/78 (34%)
Query: 3 GIGEVQEVIDICD-YAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVY 61
I EV+E +D YA R +G PLG V IS +NFP+A++
Sbjct: 647 AIAEVREAVDFLRYYAAQARRLLNGPGHK-------------PLGPVVCISPWNFPLAIF 693
Query: 62 GWNAAIALPGWQVLGQVA 79
GQ+A
Sbjct: 694 -------------TGQIA 698
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 37.9 bits (89), Expect = 3e-04
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 3 GIGEVQEVIDICD-YAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVY 61
EV+E ID C YA +S LP G + + GV IS +NFP+A++
Sbjct: 126 ADAEVREAIDFCRYYAAQARELFSDPELPGPT-GELNGLELHGRGVFVCISPWNFPLAIF 184
Query: 62 GWNAAIALPGWQVLGQVA 79
GQ+A
Sbjct: 185 -------------TGQIA 189
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 37.5 bits (87), Expect = 5e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHV--LLENWNPLGVVGIISAFNFPVAVY 61
EV + Y G + G LP++ P HV L E P+GVVG I +NFP+ ++
Sbjct: 102 YAEVPLAARLFRYYAGWADKIHGMTLPADGPHHVYTLHE---PIGVVGQIIPWNFPLLMF 158
Query: 62 GWNAAIAL 69
W AL
Sbjct: 159 AWKVGPAL 166
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 37.3 bits (87), Expect = 6e-04
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWN-------PLGVVGIISAFNFPV 58
++ D +Y GL+ T SG HV L + PLGV I A+N+P+
Sbjct: 79 DIDSSADCLEYYAGLAPTLSGE--------HVPLPGGSFAYTRREPLGVCAGIGAWNYPI 130
Query: 59 AVYGWNAAIAL 69
+ W +A AL
Sbjct: 131 QIASWKSAPAL 141
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 37.1 bits (87), Expect = 6e-04
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVVGII +N+P+
Sbjct: 101 PLGVVGIIVPWNYPL 115
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 37.2 bits (87), Expect = 7e-04
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVL--LENWNPLGVVGIISAFNFPVAVYG 62
G+V I Y G + G +P + E P+GV G I +NFP+ +
Sbjct: 103 GDVALSIKCLRYYAGWADKIQGKTIPIDGNFLAYTRRE---PIGVCGQIIPWNFPLLMLA 159
Query: 63 WNAAIAL 69
W A AL
Sbjct: 160 WKLAPAL 166
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 36.8 bits (86), Expect = 8e-04
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSIL-PSERPGHVLLEN------WNPLGVVGIISAFNFPV 58
EV ++ D+A + +L P + P +L+ N + P GVVG+IS +N+P+
Sbjct: 78 EVLLALEAIDWAARNA----PRVLAPRKVPTGLLMPNKKATVEYRPYGVVGVISPWNYPL 133
Query: 59 AVYGWNAAIAL 69
+ AL
Sbjct: 134 LTPMGDIIPAL 144
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 36.7 bits (85), Expect = 0.001
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHV--LLENWNPLGVVGIISAFNFPVAVYGW 63
E+ + Y G + G +P++ P HV L E P+GV G I +NFP+ ++ W
Sbjct: 158 ELPMFARLFRYYAGWADKIHGLTVPADGPHHVQTLHE---PIGVAGQIIPWNFPLLMFAW 214
Query: 64 NAAIAL 69
AL
Sbjct: 215 KVGPAL 220
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 36.6 bits (85), Expect = 0.001
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
I EV+E +D Y G +R G+ H PLG V IS +NFP+A++
Sbjct: 207 AIAEVREAVDFLRYYAGQARDTFGN------LTH------RPLGPVVCISPWNFPLAIFT 254
Query: 63 WNAAIAL 69
A AL
Sbjct: 255 GQIAAAL 261
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 36.3 bits (84), Expect = 0.001
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERP--GHVLLENWNPLGVVGIISAFNFPVAVY 61
+V D Y G + G ++P P + + E P+GVVG I +NFP+
Sbjct: 78 RLDVPRAADTFRYYAGWADKIEGEVIPVRGPFLNYTVRE---PVGVVGAIVPWNFPLMFA 134
Query: 62 GWNAAIAL 69
W A AL
Sbjct: 135 AWKVAPAL 142
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
R Y G +PS + L+ P+GV I+ +NFP A+ A AL
Sbjct: 96 RVY-GDTIPSPQSDKRLIVIKQPVGVCAAITPWNFPAAMITRKAGAAL 142
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 35.9 bits (83), Expect = 0.002
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 12 DICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
D+ ++ GL+ +G I+P P PLGV I A+N+P+ + W A AL
Sbjct: 102 DVFEFFAGLAPALNGEIIPLGGPSFAYTIR-EPLGVCVGIGAWNYPLQIASWKIAPAL 158
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 35.8 bits (83), Expect = 0.002
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
IGEV +Y ++ G I+PS P LL P+GVVG I+ +NFP+A+
Sbjct: 119 AIGEVAYGASFLEYFAEEAKRVYGDIIPSPFPDRRLLVLKQPVGVVGAITPWNFPLAMIT 178
Query: 63 WNAAIAL 69
AL
Sbjct: 179 RKVGPAL 185
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 35.0 bits (81), Expect = 0.003
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 12 DICDYAVGLSRTYS---GSILPSERPGHVL------LENWNPLGVVGIISAFNFPVA 59
++ D A+ +R Y+ +L R + N P GVVG+IS +N+P+
Sbjct: 78 EVLDVAIV-ARYYARRAERLLKPRRRRGAIPVLTRTTVNRRPKGVVGVISPWNYPLT 133
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 35.1 bits (81), Expect = 0.003
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILP--SERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
G++ E+I + Y G + G +P + + L E P GV G I +N+P+A+
Sbjct: 106 GDLDEIIAVIRYYAGWADKIQGKTIPTSPNKLAYTLHE---PYGVCGQIIPWNYPLAMAA 162
Query: 63 WNAAIAL 69
W A AL
Sbjct: 163 WKLAPAL 169
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 35.0 bits (81), Expect = 0.004
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 6 EVQEVIDICDYAVGLS---RTYSGSILPSERPG---HVLLENWNPLGVVGIISAFNFPVA 59
+V +V +Y L+ + +P V E P+GVVG+I+ +NFP+
Sbjct: 79 DVDDVAGCFEYYADLAEQLDAKAERAVPLPSEDFKARVRRE---PVGVVGLITPWNFPLL 135
Query: 60 VYGWNAAIAL 69
+ W A AL
Sbjct: 136 MAAWKVAPAL 145
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 34.8 bits (80), Expect = 0.004
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNA 65
EV E ID +Y + + R G + P GV +IS +NFP A+
Sbjct: 129 EVAEAIDFMEYYARQMIELAKGKPVNSREGETNQYVYTPTGVTVVISPWNFPFAIMVGMT 188
Query: 66 AIAL 69
+
Sbjct: 189 VAPI 192
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 34.1 bits (79), Expect = 0.006
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVY 61
+ E ID +Y + RPG + PLGV +IS +NFP A+
Sbjct: 132 ADTAEAIDFLEYYARQMLKLADGKPVESRPGEHNRYFYIPLGVGVVISPWNFPFAIM 188
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 34.3 bits (79), Expect = 0.007
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 43 NPLGVVGIISAFNFPVAVYGWNAAIAL 69
PLGVVG+IS +N P+ + W AL
Sbjct: 138 KPLGVVGVISPWNLPLLLMTWKVGPAL 164
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 34.1 bits (79), Expect = 0.007
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILP---SER-PGHVLLENWNPLGVVGIISAFNFP 57
GEV ID A + G +LP S R G L P+G V I+ FNFP
Sbjct: 80 GEVARAIDTFRIAAEEATRIYGEVLPLDISARGEGRQGLVRRFPIGPVSAITPFNFP 136
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 33.9 bits (78), Expect = 0.010
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 35 GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
G+VL PLGVVG+I+ +N+P+ + W A AL
Sbjct: 145 GYVL---KEPLGVVGLITPWNYPLLMATWKVAPAL 176
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 33.7 bits (78), Expect = 0.010
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 14 CDYAVGLSRTYSGSILPSER----PGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
AV R + LP E + PLGVV I +NFP+ + W A AL
Sbjct: 80 VGGAVAWLRYTASLDLPDEVIEDDDTRRVELRRKPLGVVAAIVPWNFPLLLAAWKIAPAL 139
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 33.5 bits (77), Expect = 0.011
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV 58
+G+V + DY GL G +P ++ P GVV I AFN P+
Sbjct: 77 LGDVMVAAALLDYFAGLVTELKGETIPVG-GRNLHYTLREPYGVVARIVAFNHPL 130
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 33.6 bits (77), Expect = 0.011
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 11 IDICDYAVGLSRTYSGSILP--SERPGHVL-LENWNPLGVVGIISAFNFPVAVYGWNAAI 67
I Y G G +P RP L L P+GV GI+ +N+P+ + W A
Sbjct: 111 IQTFRYFAGWCDKIQGKTIPINQARPNRNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAA 170
Query: 68 AL 69
L
Sbjct: 171 CL 172
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 33.3 bits (77), Expect = 0.013
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVV II +N+P+
Sbjct: 100 PLGVVLIIGPWNYPL 114
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 33.1 bits (76), Expect = 0.014
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGW 63
E + D+ Y GL+ G LP P + PLGVVG I +N P+ +
Sbjct: 78 RPEAAVLADLFRYFGGLAGELKGETLPF-GPDVLTYTVREPLGVVGAILPWNAPLMLAAL 136
Query: 64 NAAIAL 69
A AL
Sbjct: 137 KIAPAL 142
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 33.2 bits (75), Expect = 0.015
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
G++ +++ ++A G++ G LP+ G PLGV I FNFP + W
Sbjct: 210 GDIFRGLEVVEHACGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICPFNFPAMIPLWM 269
Query: 65 AAIAL 69
+A+
Sbjct: 270 FPVAV 274
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 33.0 bits (76), Expect = 0.016
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVV II +N+PV
Sbjct: 108 PLGVVLIIGPWNYPV 122
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 33.0 bits (75), Expect = 0.018
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGW 63
I EV+E +D C Y R +L GV IS +NFP+A++
Sbjct: 132 IAEVREAVDFCRYYAKQVR----DVLGEFSV--------ESRGVFVCISPWNFPLAIFTG 179
Query: 64 NAAIAL 69
+ AL
Sbjct: 180 QISAAL 185
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 32.8 bits (75), Expect = 0.021
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 39 LENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
L W P+GVVG I +NFP+ + W AL
Sbjct: 142 LAGWKPVGVVGQIVPWNFPLLMLAWKICPAL 172
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 32.5 bits (75), Expect = 0.025
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 40 ENWNPLGVVGIISAFNFPVA 59
E P GVVG+IS +N+P+
Sbjct: 150 ELRQPKGVVGVISPWNYPLT 169
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 32.3 bits (74), Expect = 0.026
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
++ I + Y G + G +P + + P+GV G I +NFP+ + W
Sbjct: 107 VDLPGAIKVLRYYAGWADKIHGKTIPMDGDFFTYTRH-EPVGVCGQIIPWNFPLLMAAWK 165
Query: 65 AAIAL 69
A AL
Sbjct: 166 LAPAL 170
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 32.3 bits (74), Expect = 0.029
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
E+ +D + G +RT G PGH + P+GVV I+ +N+P+ + W
Sbjct: 79 DELPGAVDNFRFFAGAARTLEGPAAGEYLPGHTSMIRREPIGVVAQIAPWNYPLMMAAWK 138
Query: 65 AAIAL 69
A AL
Sbjct: 139 IAPAL 143
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 32.5 bits (74), Expect = 0.030
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
G+V +++ ++A G++ G + PLGV I+ FNFP + W
Sbjct: 97 GDVARGLEVVEHACGVNSLLKGETSTQVATRVDVYSIRQPLGVCAGITPFNFPAMIPLWM 156
Query: 65 AAIAL 69
IA+
Sbjct: 157 FPIAI 161
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 32.0 bits (73), Expect = 0.037
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 10 VIDICDYAVGLSRTYSGSILPSERPGHVLLENWN-PLGVVGIISAFNFPVAVYGWNAAIA 68
ID Y G R GSI SE + + +++ PLGVVG I +NFP+ + W A A
Sbjct: 103 AIDHFRYFAGCIRAQEGSI--SEIDENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLAPA 160
Query: 69 L 69
L
Sbjct: 161 L 161
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 31.9 bits (73), Expect = 0.043
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
PLGVVG I +NFP+ + W A AL
Sbjct: 136 PLGVVGQIIPWNFPLLMAAWKLAPAL 161
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 31.6 bits (72), Expect = 0.056
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSE-------RPGHVLLENWNPLGVVGIISAFNFP 57
EV ID A + G +P + R + E P+GVV I+ FNFP
Sbjct: 80 VEVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTIRE---PVGVVLAITPFNFP 136
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 31.4 bits (72), Expect = 0.064
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 20 LSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
G P + G + P+GV G+I+ +N P+ + W A AL
Sbjct: 94 YILQLDGESYPQD-GGALNYVLRQPVGVAGLITPWNLPLMLLTWKIAPAL 142
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 31.3 bits (71), Expect = 0.067
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 11 IDICDYAVGLSRTYSGSILPSERPGHVLLENW------NPLGVVGIISAFNFPVAVYGWN 64
+DI A R ++G I E +++ E+ P+GVVG I +NFP + W
Sbjct: 98 VDI-PLAADHFRYFAGVIRAEEGSANMIDEDTLSIVLREPIGVVGQIIPWNFPFLMAAWK 156
Query: 65 AAIAL 69
A AL
Sbjct: 157 LAPAL 161
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 31.5 bits (72), Expect = 0.070
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGW 63
I EV+E +D Y Y+G + + PLG V IS +NFP+A++
Sbjct: 740 IAEVREAVDFLRY-------YAGQVRDDFDN-----DTHRPLGPVVCISPWNFPLAIFTG 787
Query: 64 NAAIAL 69
A AL
Sbjct: 788 QVAAAL 793
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 31.0 bits (71), Expect = 0.077
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
PLGV I A+N+P+ + W +A AL
Sbjct: 142 PLGVCAGIGAWNYPIQIACWKSAPAL 167
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 30.9 bits (70), Expect = 0.083
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 16 YAVGLSRTYSGSILPSERP--GHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
Y G + G L R G+ L E P+GVVG I +NFP ++ A AL
Sbjct: 131 YYAGAADKIHGETLKMSRQLQGYTLKE---PIGVVGHIIPWNFPSTMFFMKVAPAL 183
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 30.9 bits (71), Expect = 0.089
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 18/80 (22%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLEN---WNPLGVVGIISAFNFPVA 59
I EV+E +D C Y +R G+ P + PG N + GV IS +NFP+A
Sbjct: 642 AIAEVREAVDFCRYYAAQARRLFGA--PEKLPGPTGESNELRLHGRGVFVCISPWNFPLA 699
Query: 60 VYGWNAAIALPGWQVLGQVA 79
++ LGQVA
Sbjct: 700 IF-------------LGQVA 706
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 30.7 bits (70), Expect = 0.10
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 41 NWNPLGVVGIISAFNFPVAV 60
PLGVV II A+N+P+ +
Sbjct: 97 YKEPLGVVLIIGAWNYPLQL 116
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 30.3 bits (69), Expect = 0.16
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
P+GVV I+ +NFP + A AL
Sbjct: 123 PVGVVAAITPWNFPFFLNLAKLAPAL 148
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 30.0 bits (68), Expect = 0.18
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 4 IGEVQEVI-DICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV---- 58
+ E++ ++ + +Y G P + +++ E PLGVV +I A+N+P+
Sbjct: 73 VAEIEHLLKHLDEYLKPEKVDTVGVFGPGK--SYIIPE---PLGVVLVIGAWNYPLNLTL 127
Query: 59 -----AVYGWNAAIALP 70
A+ N + P
Sbjct: 128 IPLAGAIAAGNTVVLKP 144
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 30.0 bits (68), Expect = 0.22
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 4 IGEVQEVIDICDYAVGLSRTYSGSILPSE----RPGHVLLENWNPLGVVGIISAFNFPVA 59
EV+ I + A ++ G +P + + P+GVVG I+ FNFP
Sbjct: 79 RVEVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTVREPIGVVGAITPFNFPAN 138
Query: 60 VYGWNAAIAL 69
++ A A+
Sbjct: 139 LFAHKIAPAI 148
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 29.9 bits (68), Expect = 0.23
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
PLGVVG + +NFP+ + W A AL
Sbjct: 124 PLGVVGAVVPWNFPLLMAAWKIAPAL 149
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 29.5 bits (67), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 44 PLGVVGIISAFNFPV 58
P+GVV I+ FNFP+
Sbjct: 123 PIGVVAAITPFNFPL 137
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 29.5 bits (66), Expect = 0.32
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
R Y G +P + L+ P+GV I+ +NFP A+ A AL
Sbjct: 125 RIY-GDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPAL 171
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 29.1 bits (66), Expect = 0.33
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 44 PLGVVGIISAFNFP--VAVYGWNAAIA 68
PLGVV II+ +N+P AV NA I
Sbjct: 116 PLGVVLIIAPWNYPYLTAV---NAVIP 139
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 29.2 bits (66), Expect = 0.33
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPS-------ERPGHVLLENWNPLGVVGIISAFNFPV 58
EV D+ +A + G R L PLGVV I+ FN P+
Sbjct: 78 EVGRAADVLRFAAAEALRDDGESFSCDLTANGKARKIFTL---REPLGVVLAITPFNHPL 134
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 29.4 bits (66), Expect = 0.37
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 30 PSERPGHVLL--ENWN-----PLGVVGIISAFNFPVAVYGWNAAIAL 69
G + N P+G VG+I+ +N P + W A AL
Sbjct: 114 EEAMDGRTYPVDTHLNYTVRVPVGPVGLITPWNAPFMLSTWKIAPAL 160
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 29.0 bits (65), Expect = 0.41
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
P+GV G I +NFP+ + W A AL
Sbjct: 144 PIGVCGQIIPWNFPLLMCAWKIAPAL 169
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 28.9 bits (65), Expect = 0.41
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 44 PLGVVGIISAFNFP 57
PLGVV +ISA+NFP
Sbjct: 101 PLGVVLVISAWNFP 114
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 28.7 bits (65), Expect = 0.50
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
E+ ++D+ + G +R G GH + +P+GVV I+ +N+P+ + W
Sbjct: 99 DEIPAIVDVFRFFAGAARCLEGKAAGEYLEGHTSMIRRDPVGVVASIAPWNYPLMMAAWK 158
Query: 65 AAIAL 69
A AL
Sbjct: 159 LAPAL 163
>gnl|CDD|225000 COG2089, SpsE, Sialic acid synthase [Cell envelope biogenesis,
outer membrane].
Length = 347
Score = 28.5 bits (64), Expect = 0.63
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 30/108 (27%)
Query: 1 MRGIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLL----------ENWNPLGVVGI 50
M I E++E + I R P LL E+ N + +
Sbjct: 156 MATIEEIEEAVAIL-------REN-------GNPDIALLHCTSAYPAPFEDVNLKAIPKL 201
Query: 51 ISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRWFQTLAKTLK 98
AFN V + I P L VAL G V+ + F TL K+ +
Sbjct: 202 AEAFNAIVGLSDHTLGILAP----LAAVAL-GASVIEKHF-TLDKSRE 243
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 28.4 bits (63), Expect = 0.64
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
P G V +I AFNFP+ + A AL
Sbjct: 100 PYGPVLVIGAFNFPLWIPLLQLAGAL 125
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 28.0 bits (63), Expect = 0.83
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 30 PSERPGHVLLE------NWNPLGVVGIISAFNFP 57
P RPG +L+ + PLGVVG I ++N+P
Sbjct: 100 PESRPGGLLMFYKRARVEYEPLGVVGAIVSWNYP 133
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 28.0 bits (63), Expect = 0.84
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 11 IDICD------YAVGLSRTYSGSILPSERPGHV----LLENWNPLGVVGIISAFNFPVAV 60
IDI D Y GL+ +G + P HV + E P+GV G+I+ +N+P+
Sbjct: 96 IDIDDVANCFRYYAGLATKETGEVYDV--PPHVISRTVRE---PVGVCGLITPWNYPLLQ 150
Query: 61 YGWNAAIAL 69
W A AL
Sbjct: 151 AAWKLAPAL 159
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 27.9 bits (62), Expect = 0.95
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 16 YAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
YA + + Y G + + ++ P+GV+ I +NFP+ + W AL
Sbjct: 131 YAEAIDKVY-GEVATTSSHELAMIVR-EPVGVIAAIVPWNFPLLLTCWKLGPAL 182
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 27.9 bits (63), Expect = 1.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 44 PLGVVGIISAFNFPV 58
P GVV II+ +N+P
Sbjct: 100 PYGVVLIIAPWNYPF 114
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 27.7 bits (62), Expect = 1.2
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 45 LGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG 82
L VV + F FPVA YG IAL W + +LVG
Sbjct: 110 LRVVAPEAYFQFPVAKYG----IALDNWTIRRLSSLVG 143
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 27.6 bits (62), Expect = 1.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 44 PLGVVGIISAFNFP 57
P GV+ + FNFP
Sbjct: 97 PHGVMAVFGPFNFP 110
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 27.4 bits (61), Expect = 1.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 44 PLGVVGIISAFNFPV 58
P+GVV ISAFN P+
Sbjct: 124 PIGVVVAISAFNHPL 138
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 27.0 bits (60), Expect = 1.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVV I S++NFP+
Sbjct: 108 PLGVVLIFSSWNFPI 122
>gnl|CDD|132626 TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated
methylase. Members of this small clade are
methyltransferases of the pfam08241 family and are
observed within operons for the biosynthesis of
pseudaminic acid, a component of exopolysaccharide and
flagellin glycosyl modifications. Notable among these
genomes is Pseudomonas fluorescens PfO-1. Possibly one
of the two hydroxyl groups of pseudaminic acid, at
positions 4 and 8 is converted to a methoxy group by
this enzyme.
Length = 204
Score = 26.7 bits (59), Expect = 2.2
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 62 GWNAAIALPGWQ-VLGQVALVGVEVVPRWFQTLAKTLKNQNQIQ 104
G N + L + +L + GVE+ + L N N IQ
Sbjct: 51 GANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQ 94
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 26.8 bits (60), Expect = 2.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVV I FN+P+
Sbjct: 141 PLGVVLAIGPFNYPL 155
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 26.6 bits (59), Expect = 2.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIAL 69
P+GVV I +NF V + W AL
Sbjct: 142 PVGVVAGIVPWNFSVMIAVWKIGAAL 167
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 26.8 bits (60), Expect = 2.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
+V+ +Y G + G +P PG+ + P GV G I +N+P+ + G
Sbjct: 77 ARADVEAAARYFEYYGGAADKLHGETIPLG-PGYFVYTVREPHGVTGHIIPWNYPLQITG 135
Query: 63 WNAAIAL 69
+ A AL
Sbjct: 136 RSVAPAL 142
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 26.7 bits (60), Expect = 3.0
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 24/78 (30%)
Query: 3 GIGEVQEVIDICDY-----AVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFP 57
EV++ IC Y L+ I +V E PLGVV I +NFP
Sbjct: 56 ARAEVEKCAWICRYYAENAEAFLADEP---IETDAGKAYVRYE---PLGVVLGIMPWNFP 109
Query: 58 VAVYGWNAAIALPGWQVL 75
WQV
Sbjct: 110 F-------------WQVF 114
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 26.5 bits (58), Expect = 3.3
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 44 PLGVVGIISAFNFP 57
PLGVV +ISA+N+P
Sbjct: 112 PLGVVLVISAWNYP 125
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 26.4 bits (59), Expect = 4.0
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 15 DYAVGLSRTYSGSILPSERPG------HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIA 68
Y L+R + RPG V E P+GVV I +N P+ + A A
Sbjct: 108 RYYAALARDFP---FEERRPGSGGGHVLVRRE---PVGVVAAIVPWNAPLFLAALKIAPA 161
Query: 69 L 69
L
Sbjct: 162 L 162
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 25.4 bits (56), Expect = 4.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 82 GVEVVPRWFQTLAKTLKNQN 101
GV V P W AK L+ ++
Sbjct: 31 GVNVEPYWPGLFAKALEGKD 50
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 25.9 bits (57), Expect = 4.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVV I FN+PV
Sbjct: 158 PLGVVLAIPPFNYPV 172
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 25.5 bits (57), Expect = 5.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 63 WNAAIALPG-----WQVLGQVALVGVEVVP 87
+ + PG W+ L QV L G E VP
Sbjct: 97 FYQRLHGPGDDEALWEALAQVGLAGFEDVP 126
>gnl|CDD|113903 pfam05150, Legionella_OMP, Legionella pneumophila major outer
membrane protein precursor. This family consists of
major outer membrane protein precursors from Legionella
pneumophila.
Length = 297
Score = 25.8 bits (56), Expect = 6.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 16 YAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPV--AVYGWNAAIALPGWQ 73
+A+G S ++G++ P PG+V + +GI + + P+ A +G+N + GW+
Sbjct: 12 FALGSSALFAGTMGPVCTPGNVTVPCERTAWDIGITALYLQPIYDADWGYNGFTDVGGWR 71
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 25.5 bits (57), Expect = 6.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 32 ERPGHVLLENWNPLGVVGIISAFNFPV 58
ER G+ L+ P+GV G+I+ +N+P+
Sbjct: 119 ERRGNSLVV-REPIGVCGLITPWNWPL 144
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 25.6 bits (57), Expect = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 44 PLGVVGIISAFNFPVA 59
PLG V + A NFP+A
Sbjct: 105 PLGPVAVFGASNFPLA 120
>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase. Members
of this protein family are the homodimeric, pyridoxal
phosphate enzyme diaminopropionate ammonia-lyase, which
adds water to remove two amino groups, leaving pyruvate.
Length = 396
Score = 25.5 bits (56), Expect = 7.3
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 39 LENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGVEVVPRW----FQTLA 94
LEN G I+ N+ AV GW ++ A G E +P W + TLA
Sbjct: 152 LENIRAEGAECTITDLNYDDAVRLAWKMAQENGWVMVQDTAWEGYEKIPTWIMQGYGTLA 211
Query: 95 KTLKNQNQIQKCPK 108
Q + Q K
Sbjct: 212 LEALEQLKEQGVEK 225
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 25.5 bits (56), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIALPGWQVLG 76
P G V II+ FNFP + +P Q++G
Sbjct: 142 PYGPVAIITPFNFP---------LEIPALQLMG 165
>gnl|CDD|216371 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family.
Length = 429
Score = 25.1 bits (55), Expect = 8.5
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 36 HVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQV-------ALVGVEVVPR 88
L +N+ + I+ +F + +Y + G +G E+ PR
Sbjct: 133 TYLYDNFVQIMSSAILFSFALAIYLYVRSLKAPEEDKDAPGGNSGNLIYDFFIGRELNPR 192
Query: 89 W 89
Sbjct: 193 I 193
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 25.4 bits (56), Expect = 8.9
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 28 ILPSERPGHVLLENWNPLG 46
+P++RPG ++++W+ G
Sbjct: 164 AVPTDRPGITVVDDWDGFG 182
>gnl|CDD|193533 cd05657, M42_glucanase_like, M42 Peptidase, Endoglucanase-like
subfamily. Peptidase M42 family, glucanase (endo-1
4-beta-glucanase or endoglucanase)-like subfamily.
Proteins in this subfamily are co-catalytic
metallopeptidases, found in archaea and bacteria. They
show similarity to cellulase and endo-1,4-beta-glucanase
(endoglucanase) which typically bind two zinc or cobalt
atoms. Some of the enzymes exhibit typical
aminopeptidase specificity, whereas others are also
capable of N-terminal deblocking activity, i.e.
hydrolyzing acylated N-terminal residues. Many of these
enzymes are assembled either as tetrahedral dodecamers
or as octahedral tetracosameric structures, with the
active site located on the inside such that substrate
sizes are limited, indicating function as possible
peptide scavengers.
Length = 336
Score = 25.2 bits (56), Expect = 9.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 22 RTYSGSILPSERPGHV 37
+ Y+G+ILP + HV
Sbjct: 106 KVYTGTILPLKASVHV 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.446
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,660,018
Number of extensions: 499469
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 123
Length of query: 109
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 35
Effective length of database: 7,655,406
Effective search space: 267939210
Effective search space used: 267939210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)