RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3661
(109 letters)
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 127 bits (321), Expect = 3e-36
Identities = 51/67 (76%), Positives = 58/67 (86%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
G+GEVQE +DICDYAVGLSR G ILPSER GH L+E WNP+G+VGII+AFNFPVAVYG
Sbjct: 116 GVGEVQEYVDICDYAVGLSRMIGGPILPSERSGHALIEQWNPVGLVGIITAFNFPVAVYG 175
Query: 63 WNAAIAL 69
WN AIA+
Sbjct: 176 WNNAIAM 182
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 66.2 bits (162), Expect = 3e-14
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
+V E ID +Y PG + + P GV +I+ +NFP+A+
Sbjct: 625 AYADVTEAIDFLEYYAREMIRLGQPQRVGHAPGELNHYFYEPKGVAAVIAPWNFPLAISM 684
Query: 63 WNAAIAL 69
A+ A+
Sbjct: 685 GMASAAI 691
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 59.5 bits (145), Expect = 5e-12
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
+ E ID +Y + RPG + P+GV IS +NF +A+
Sbjct: 131 ADADTAEAIDFLEYYARQMIELNRGKEILSRPGEQNRYFYTPMGVTVTISPWNFALAIMV 190
Query: 63 WNAAIAL 69
A +
Sbjct: 191 GTAVAPI 197
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 58.0 bits (141), Expect = 2e-11
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
E+ +I + G I PS PG GVVG+IS +NFP+ + +
Sbjct: 109 LEITLAGNITKESASFPGRVHGRISPSNTPGKENRVYRVAKGVVGVISPWNFPLNLSIRS 168
Query: 65 AAIAL 69
A AL
Sbjct: 169 VAPAL 173
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 57.6 bits (140), Expect = 2e-11
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPS-ERPGHVLLENWNPLGVVGIISAFNFPVAVY 61
+V E ID +Y + Y + PG + PLG +I+ +NFPVA++
Sbjct: 131 ASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIF 190
Query: 62 GWNAAIAL 69
+
Sbjct: 191 TGMIVGPV 198
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 57.8 bits (140), Expect = 3e-11
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERP-GHVLLENWNPLGVVGIISAFNFPVAVY 61
+ E++E D C Y R GS P G GV IS +NFP+A++
Sbjct: 607 ALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIF 666
Query: 62 GWNAAIAL 69
AL
Sbjct: 667 LGQVTAAL 674
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 45.4 bits (108), Expect = 5e-07
Identities = 10/64 (15%), Positives = 23/64 (35%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNA 65
+V + + + + + E ++E PLGVV + P + +
Sbjct: 70 KVIKNVFASKHVYNYIKDMKTIGMLKEDNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKT 129
Query: 66 AIAL 69
I++
Sbjct: 130 LISI 133
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 45.2 bits (108), Expect = 5e-07
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILP-----SERPGHVLLENWNPLGVVGIISAFNFPVA 59
EV +I +YA G +L + + + P+G+V IS FN+PV
Sbjct: 99 SEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVN 158
Query: 60 VYGWNAAIAL 69
+ G A AL
Sbjct: 159 LAGSKIAPAL 168
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 44.9 bits (107), Expect = 7e-07
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWN---PLGVVGIISAFNFPVAVY 61
GEV I+ ++A G G L S +E N P+GVVG I+ FNFP+ V
Sbjct: 102 GEVGRGIENVEFAAGAPSLMMGDSLASIATD---VEAANYRYPIGVVGGIAPFNFPMMVP 158
Query: 62 GWNAAIAL 69
W +A+
Sbjct: 159 CWMFPMAI 166
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 44.6 bits (106), Expect = 8e-07
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 2 RGIGEVQEVIDICDYAVGLSRTYSGS--------ILPSERPGHVLLENWNPLGVVGIISA 53
R GE+ + + + S + P + LG V + A
Sbjct: 86 RLTGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGA 145
Query: 54 FNFPVA--VYGWNAAIAL 69
NFP+A G + A AL
Sbjct: 146 SNFPLAFSAAGGDTASAL 163
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 44.9 bits (107), Expect = 8e-07
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSER-----PGHVLLENWNPLGVVGIISAFNFPVA 59
GEV DI + + +G L ++ + L PLGVV IS FN+PV
Sbjct: 108 GEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVN 167
Query: 60 VYGWNAAIAL 69
+ A AL
Sbjct: 168 LAAAKIAPAL 177
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 44.5 bits (106), Expect = 9e-07
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 5 GEVQEVIDICDYAVGL-SRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGW 63
E+++ I I D A+ +PS+ G PLGV+ IS FNFP+ +
Sbjct: 103 IELEQTIAILDEAMTYTGELGGVKEVPSDIEGKTNKIYRLPLGVISSISPFNFPMNLSMR 162
Query: 64 NAAIAL 69
+ A A+
Sbjct: 163 SIAPAI 168
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 44.5 bits (106), Expect = 1e-06
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYG 62
EV +++ +V R +G +L + P GVV + +NFP +
Sbjct: 99 SATEVTSMVNKVAISVQAFRERTGEKSGPLADATAVLRH-KPHGVVAVFGPYNFPGHLPN 157
Query: 63 WNAAIAL 69
+ AL
Sbjct: 158 GHIVPAL 164
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 43.4 bits (103), Expect = 2e-06
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWN---PLGVVGIISAFNFPVAVY 61
G++ +++C++ +G+ PG ++ ++ P+G+ I+ FNFP +
Sbjct: 123 GDIVRGLEVCEFVIGIPHLQKSEFTEGAGPG---IDMYSIRQPVGIGAGITPFNFPGMIP 179
Query: 62 GWNAAIAL 69
W A A+
Sbjct: 180 MWMFAPAI 187
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 41.8 bits (99), Expect = 9e-06
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
EV+ I A + + ++PS ++ P+G+VG I+ FNFP+ +
Sbjct: 93 VEVERSIGTFKLAAFYVKEHRDEVIPS--DDRLIFTRREPVGIVGAITPFNFPLNLSAHK 150
Query: 65 AAIAL 69
A A+
Sbjct: 151 IAPAI 155
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 41.6 bits (98), Expect = 1e-05
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 2 RGIGEVQEVIDICDYAVGLSRTYS------GSILPSERP--GHVLLENWNPLGVVGIISA 53
R GE + +P +P + P+G V + A
Sbjct: 119 RLNGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGA 178
Query: 54 FNFPVA--VYGWNAAIAL 69
NFP+A G + A AL
Sbjct: 179 SNFPLAFSTAGGDTAAAL 196
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 40.6 bits (96), Expect = 2e-05
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGH---VLLENWNPLGVVGIISAFNFPVAVY 61
++ ++ ++ Y GL+ G ++ S P ++ E P+GVV I+ +N+P+
Sbjct: 131 ADMDDIHNVFMYFAGLADKDGGEMIDSPIPDTESKIVKE---PVGVVTQITPWNYPLLQA 187
Query: 62 GWNAAIAL 69
W A AL
Sbjct: 188 SWKIAPAL 195
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 40.2 bits (95), Expect = 3e-05
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVYG 62
+ +Y G + + + + G V E P+GVVG I A+N P+ +
Sbjct: 108 MHWMGSMGAMNYFAGAADKVTWTETRTGSYGQSIVSRE---PVGVVGAIVAWNVPLFLAV 164
Query: 63 WNAAIAL 69
A AL
Sbjct: 165 NKIAPAL 171
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 39.9 bits (94), Expect = 4e-05
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERP----GHVLLENWNPLGVVGIISAFNFPVAV 60
GEV+ +D A + G +P + L PLGVV I+ FN+P+
Sbjct: 114 GEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFD 173
Query: 61 YGWNAAIAL 69
+
Sbjct: 174 AVNKITYSF 182
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 39.9 bits (94), Expect = 4e-05
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
GE+ D+ YA G +R G + + L P+GVVGII+ +NFP +
Sbjct: 122 GEIGFCADLWSYAAGQARALEGQTHNNIGDDRLGLVLREPVGVVGIITPWNFPFIIASER 181
Query: 65 AAIAL 69
A+
Sbjct: 182 VPWAI 186
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 39.6 bits (93), Expect = 6e-05
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWN---------PLGVVGIISAFN 55
++ I Y L + + L ++ + GV I+AFN
Sbjct: 103 VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFN 162
Query: 56 FPVAVYGWNAAIAL 69
FP AA AL
Sbjct: 163 FPSWGLWEKAAPAL 176
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 39.5 bits (93), Expect = 6e-05
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVYG 62
++ +Y GL+ T SG + E PLGV I A+N+P +
Sbjct: 117 YDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRRE---PLGVCAGILAWNYPFMIAA 173
Query: 63 WNAAIAL 69
W A AL
Sbjct: 174 WKCAPAL 180
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 39.1 bits (92), Expect = 7e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGH---VLLENWNPLGVVGIISAFNFPVAVYG 62
E+ ++D+ + G +R +G GH + + PLGVV I+ +N+P+ +
Sbjct: 121 EIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRD---PLGVVASIAPWNYPLMMAA 177
Query: 63 WNAAIAL 69
W A AL
Sbjct: 178 WKLAPAL 184
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 38.8 bits (91), Expect = 9e-05
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWN 64
Y G + E + P+G++ I P + +
Sbjct: 66 VIKNHFASEFIYNKYKDEQTCGIL--EEDDNLGTMTIAEPVGIICGIVPTTNPTSTAIFK 123
Query: 65 AAIAL 69
+ I+L
Sbjct: 124 SLISL 128
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 44 PLGVVGIISAFNFPV 58
P GV II FN+PV
Sbjct: 130 PYGVTYIIGPFNYPV 144
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 37.5 bits (88), Expect = 2e-04
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 69
R G I+ S+RPG +L LGV I +NFP + A AL
Sbjct: 121 RYE-GEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPAL 167
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 37.5 bits (88), Expect = 3e-04
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVYGW 63
++ D+ +Y GL G +P E PLGVV I A+N+PV + W
Sbjct: 105 DIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRRE---PLGVVAGIGAWNYPVQIALW 161
Query: 64 NAAIAL 69
+A AL
Sbjct: 162 KSAPAL 167
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 37.5 bits (88), Expect = 3e-04
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 6 EVQEVIDICDYAVGLSRTYSGSILPSERPGH---VLLENWNPLGVVGIISAFNFPVAVYG 62
E+ +ID + G R PGH + + P+G+VG I+ +N+P+ +
Sbjct: 123 ELPAIIDCWRFFAGAVRNLHAPAAGEYLPGHTSMIRRD---PIGIVGSIAPWNYPLMMMA 179
Query: 63 WNAAIAL 69
W A A+
Sbjct: 180 WKLAPAI 186
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 37.5 bits (88), Expect = 3e-04
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 44 PLGVVGIISAFNFPV 58
PLGVV +I +N+P
Sbjct: 120 PLGVVLVIGTWNYPF 134
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 36.8 bits (86), Expect = 5e-04
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVYG 62
++ I Y G + G +P + E P+GV G I +NFP+ ++
Sbjct: 121 MDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSE---PVGVCGQIIPWNFPLLMFL 177
Query: 63 WNAAIAL 69
W AL
Sbjct: 178 WKIGPAL 184
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
R Y G I+ + L P+GV +I+ +NFP A
Sbjct: 125 RVY-GDIIHTPAKDRRALVLKQPIGVAAVITPWNFPSA 161
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 36.8 bits (86), Expect = 6e-04
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVYG 62
++ V+ Y G + Y G +P + E P+GV G I +NFP+ +
Sbjct: 120 VDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHE---PVGVCGQIIPWNFPLLMQA 176
Query: 63 WNAAIAL 69
W AL
Sbjct: 177 WKLGPAL 183
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 36.4 bits (85), Expect = 7e-04
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
G ILPS+ + + P GVV I+A+NFP+A
Sbjct: 127 TIE-GDILPSDNQDEKIYIHKVPRGVVVGITAWNFPLA 163
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 36.5 bits (85), Expect = 7e-04
Identities = 14/55 (25%), Positives = 17/55 (30%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFP 57
I E+ID + + G S P G V IS FNF
Sbjct: 159 EIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFT 213
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 36.0 bits (84), Expect = 9e-04
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
R Y G +P + L+ P+GV I+ +NFP A
Sbjct: 124 RIY-GDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAA 160
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 36.0 bits (84), Expect = 9e-04
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
R Y G +P+ + G L P+GV I+ +NFP A
Sbjct: 147 RVY-GDTIPAPQNGQRLTVIRQPVGVTAAITPWNFPAA 183
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
R G LP+ ++ P+GV I+ +NFP A
Sbjct: 127 RVA-GDTLPTPDANKRIVVVKEPIGVCAAITPWNFPAA 163
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVYG 62
+ + + +S E + + +GVVG+I+ +N+P+
Sbjct: 123 AQTATGSSHIRNFIKAYKEFSFQEALIEGNEQAILHYD---AIGVVGLITPWNWPMNQVT 179
Query: 63 WNAAIAL 69
AL
Sbjct: 180 LKVIPAL 186
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
+P + ++ P+GV G+I +NFP+
Sbjct: 126 ALD-SHTIPEKPKDCTWTVHYRPVGVTGLIVPWNFPIG 162
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 34.5 bits (80), Expect = 0.003
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 5 GEVQEVIDICDYAVGLSRT-YSGSILPSERP-GHVLLENWNPLGVVGIISAFNFPVAVYG 62
+ D ++ G++ + +G +P + PLGV I A+N+P +
Sbjct: 112 ADPTSGADAFEFFGGIAPSALNGDYIPLGGDFAYTKRV---PLGVCVGIGAWNYPQQIAC 168
Query: 63 WNAAIAL 69
W AA AL
Sbjct: 169 WKAAPAL 175
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 34.5 bits (80), Expect = 0.003
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWN---PLGVVGIISAFNFPVAVY 61
V I Y G G+ +P + P+GV GI+ +N+P+ +
Sbjct: 136 THVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMML 195
Query: 62 GWNAAIAL 69
W A L
Sbjct: 196 SWKTAACL 203
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 34.1 bits (79), Expect = 0.005
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 5 GEVQEVIDICDYAVGLSRTYSGS-ILPSERPG-----HVLLENWNPLGVVGIISAFNFPV 58
++ +V +Y L+ P P HVL E P+GVVG+I+ +N+P+
Sbjct: 109 WDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLRE---PIGVVGLITPWNYPM 165
Query: 59 AVYGWNAAIAL 69
+ W A AL
Sbjct: 166 LMATWKVAPAL 176
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 32.9 bits (76), Expect = 0.012
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 5 GEVQEVIDICDYAVGLS-RTYSGSILPSERPGH--VLLENWNPLGVVGIISAFNFPVAVY 61
+V + + + P +R + P G VGII+ +N P+ +
Sbjct: 123 AQVARAAENFAFYAEYAEHAMEDRTFPVDRDWLYYTVRV---PAGPVGIITPWNAPLMLS 179
Query: 62 GWNAAIAL 69
W A AL
Sbjct: 180 TWRIAPAL 187
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 31.3 bits (72), Expect = 0.037
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 7 VQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAA 66
Q ++ A Y + V+ E +GV G+I+ +NFP A
Sbjct: 107 YQMGLNHFVAARDALDNYEFEERRGD--DLVVKE---AIGVSGLITPWNFPTNQTSLKLA 161
Query: 67 IAL 69
A
Sbjct: 162 AAF 164
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 26.7 bits (60), Expect = 1.5
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 3 GIGEVQEVIDICD-YAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
EV+ + IC+ YA + L S+ G+ GV+ +NFP+
Sbjct: 83 SKEEVELCVSICNYYADHGPEMLKPTKLNSD-LGNAYYL-KQSTGVIMACEPWNFPLY 138
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 25.6 bits (57), Expect = 4.2
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 3 GIGEVQEVIDICDYAVGLSRTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVA 59
EV + +CD+ P+ + + PLGV+ I +NFP+
Sbjct: 86 ARAEVTKSAALCDWYAEHGPAMLNPE-PTLVENQQAVIEYRPLGVILAIMPWNFPLW 141
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 25.4 bits (56), Expect = 4.5
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 71 GWQVLGQVALVGVEVVPRWFQTLAKTLKNQNQIQKC 106
G+ V + + TLK Q +I+
Sbjct: 121 GYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTN 156
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted
repeats, LEUT-fold, galactose; 2.73A {Vibrio
parahaemolyticus} PDB: 2xq2_B 2kpe_A
Length = 593
Score = 25.1 bits (55), Expect = 6.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIALP 70
+G+ G + +A Y W +AI L
Sbjct: 70 FIGMSGSGYSIGLAIASYEWMSAITLI 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 6.6
Identities = 20/95 (21%), Positives = 23/95 (24%), Gaps = 43/95 (45%)
Query: 22 RTYSGSILPSERPGHVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL---------PGW 72
R SGSI +V I PV W PG
Sbjct: 469 RVLSGSISER---------------IVDCI--IRLPV---KWETTTQFKATHILDFGPG- 507
Query: 73 QVLGQVALV-------GVEVVPRWFQTLAKTLKNQ 100
G L GV V+ +A TL
Sbjct: 508 GASGLGVLTHRNKDGTGVRVI------VAGTLDIN 536
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 25.1 bits (55), Expect = 6.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 44 PLGVVGIISAFNFPVAVYGWNAAIALP 70
+G+ G + +A Y W +AI L
Sbjct: 41 FIGMSGSGYSIGLAIASYEWMSAITLI 67
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 24.8 bits (55), Expect = 7.3
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 44 PLGVVGII 51
P+G +GII
Sbjct: 125 PIGPIGII 132
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 24.9 bits (55), Expect = 8.0
Identities = 4/8 (50%), Positives = 7/8 (87%)
Query: 44 PLGVVGII 51
P+GV+ +I
Sbjct: 126 PVGVLLVI 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.446
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,759,465
Number of extensions: 98629
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 57
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)