Query psy3662
Match_columns 132
No_of_seqs 118 out of 637
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:27:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_A Histone H2A-IV; histone 100.0 8.1E-49 2.8E-53 282.8 9.6 123 1-123 1-124 (129)
2 2nqb_C Histone H2A; nucleosome 100.0 1.4E-48 4.9E-53 279.6 9.6 122 2-123 1-122 (123)
3 2f8n_G Core histone macro-H2A. 100.0 2.4E-48 8.1E-53 277.4 9.2 119 1-121 1-119 (120)
4 2f8n_K Histone H2A type 1; nuc 100.0 5.9E-48 2E-52 283.7 9.2 124 1-124 20-144 (149)
5 1id3_C Histone H2A.1; nucleoso 100.0 3E-47 1E-51 275.2 12.1 122 8-131 9-130 (131)
6 1f66_C Histone H2A.Z; nucleoso 100.0 8.6E-47 2.9E-51 271.9 8.8 123 1-124 1-127 (128)
7 2jss_A Chimera of histone H2B. 100.0 2.1E-36 7.3E-41 230.5 9.3 98 13-111 94-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 3.1E-25 1.1E-29 201.6 6.1 101 12-114 92-192 (1049)
9 1jfi_A Transcription regulator 99.9 7.6E-24 2.6E-28 145.8 7.3 81 17-97 4-84 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 9E-20 3.1E-24 125.1 7.7 79 19-97 14-92 (97)
11 2yfw_B Histone H4, H4; cell cy 99.8 1.4E-19 4.8E-24 125.5 7.7 88 1-91 1-95 (103)
12 1tzy_D Histone H4-VI; histone- 99.8 3.1E-19 1.1E-23 123.7 8.4 87 1-90 1-94 (103)
13 4g92_C HAPE; transcription fac 99.8 4.7E-19 1.6E-23 125.7 7.8 75 23-97 40-114 (119)
14 2byk_A Chrac-16; nucleosome sl 99.7 4.1E-18 1.4E-22 123.9 4.8 85 13-97 8-93 (140)
15 1f1e_A Histone fold protein; a 99.5 1E-14 3.5E-19 107.4 6.7 71 19-90 77-147 (154)
16 1id3_B Histone H4; nucleosome 99.4 1.2E-12 4.2E-17 90.4 8.0 79 9-90 15-93 (102)
17 1ku5_A HPHA, archaeal histon; 99.4 1.6E-12 5.4E-17 83.8 7.1 65 24-89 6-70 (70)
18 1b67_A Protein (histone HMFA); 99.3 5.2E-12 1.8E-16 80.8 7.3 64 24-88 2-65 (68)
19 2hue_C Histone H4; mini beta s 99.2 1.5E-10 5.3E-15 77.0 8.6 72 16-90 4-75 (84)
20 1n1j_A NF-YB; histone-like PAI 99.1 2.9E-10 9.8E-15 76.8 6.5 68 21-88 5-73 (93)
21 1taf_B TFIID TBP associated fa 99.0 1.5E-09 5E-14 70.2 7.1 65 23-88 5-69 (70)
22 1f1e_A Histone fold protein; a 99.0 1.1E-09 3.6E-14 80.6 7.0 64 24-87 4-67 (154)
23 3b0c_W CENP-W, centromere prot 99.0 1.7E-09 5.9E-14 70.6 6.7 66 23-88 3-68 (76)
24 2byk_B Chrac-14; nucleosome sl 98.9 1.8E-09 6.3E-14 77.1 4.8 73 22-94 7-80 (128)
25 3b0c_T CENP-T, centromere prot 98.8 3.3E-09 1.1E-13 74.1 3.8 71 22-93 5-75 (111)
26 1taf_A TFIID TBP associated fa 98.7 3E-08 1E-12 63.6 6.7 60 29-89 6-65 (68)
27 1jfi_B DR1 protein, transcript 98.5 2E-07 7E-12 69.9 6.6 78 18-96 9-86 (179)
28 4dra_A Centromere protein S; D 98.4 5E-07 1.7E-11 63.2 6.1 75 20-98 26-103 (113)
29 3v9r_A MHF1, uncharacterized p 98.4 8.8E-07 3E-11 59.7 6.9 78 21-99 12-89 (90)
30 2hue_B Histone H3; mini beta s 98.4 8.6E-07 2.9E-11 58.1 6.4 66 23-88 2-71 (77)
31 3nqj_A Histone H3-like centrom 98.4 7.3E-07 2.5E-11 59.1 5.8 66 23-88 2-73 (82)
32 3b0b_B CENP-S, centromere prot 98.3 1.4E-06 4.8E-11 60.4 6.3 77 21-98 19-95 (107)
33 2ly8_A Budding yeast chaperone 98.2 2.2E-06 7.5E-11 60.6 6.2 51 38-88 60-110 (121)
34 2l5a_A Histone H3-like centrom 98.2 7.6E-07 2.6E-11 69.2 4.0 60 30-90 167-226 (235)
35 3nqu_A Histone H3-like centrom 98.2 2.4E-06 8.2E-11 61.8 5.9 68 21-88 58-131 (140)
36 3r45_A Histone H3-like centrom 98.2 2E-06 6.9E-11 63.1 5.5 71 21-91 74-150 (156)
37 2yfv_A Histone H3-like centrom 98.2 2.9E-06 9.7E-11 58.2 5.8 68 21-88 24-98 (100)
38 1tzy_C Histone H3; histone-fol 98.1 6.8E-06 2.3E-10 59.1 6.6 68 21-88 59-130 (136)
39 3vh5_A CENP-S; histone fold, c 98.1 5.5E-06 1.9E-10 59.8 5.5 79 20-99 18-96 (140)
40 2nqb_D Histone H2B; nucleosome 97.9 2.5E-05 8.7E-10 55.2 6.0 60 28-87 37-96 (123)
41 1tzy_B Histone H2B; histone-fo 97.8 3.6E-05 1.2E-09 54.6 6.1 64 23-87 36-99 (126)
42 2jss_A Chimera of histone H2B. 97.3 0.00034 1.2E-08 52.7 5.8 61 28-88 7-67 (192)
43 1bh9_B TAFII28; histone fold, 97.0 0.0012 4.2E-08 44.0 5.6 64 24-88 16-80 (89)
44 4dra_E Centromere protein X; D 96.7 0.0066 2.3E-07 40.1 7.1 68 20-87 8-77 (84)
45 3b0b_C CENP-X, centromere prot 96.6 0.0094 3.2E-07 39.1 7.3 65 22-86 6-72 (81)
46 1h3o_B Transcription initiatio 95.9 0.022 7.6E-07 36.8 5.9 66 24-89 5-70 (76)
47 2l5a_A Histone H3-like centrom 95.1 0.035 1.2E-06 43.0 5.5 66 22-87 9-81 (235)
48 1wwi_A Hypothetical protein TT 91.1 0.68 2.3E-05 33.4 6.5 60 24-84 2-61 (148)
49 1k6k_A ATP-dependent CLP prote 87.7 0.71 2.4E-05 31.4 4.3 40 59-98 6-45 (143)
50 1r4v_A Hypothetical protein AQ 86.8 0.67 2.3E-05 34.1 3.9 60 24-84 26-85 (171)
51 1khy_A CLPB protein; alpha hel 82.8 1 3.5E-05 30.7 3.3 33 59-91 10-42 (148)
52 3fes_A ATP-dependent CLP endop 81.7 0.78 2.7E-05 31.7 2.3 39 59-97 12-52 (145)
53 2y1q_A CLPC N-domain, negative 80.1 1.3 4.3E-05 30.4 2.9 39 59-97 10-50 (150)
54 3fh2_A Probable ATP-dependent 79.5 0.92 3.2E-05 31.3 2.1 39 59-97 11-51 (146)
55 3v9r_B MHF2, uncharacterized p 78.3 9.6 0.00033 25.0 6.6 48 25-72 2-51 (88)
56 3zri_A CLPB protein, CLPV; cha 77.9 1.8 6.3E-05 31.2 3.3 47 51-97 18-69 (171)
57 3fes_A ATP-dependent CLP endop 74.6 2 7E-05 29.5 2.7 39 59-97 86-126 (145)
58 3fh2_A Probable ATP-dependent 73.6 2.8 9.5E-05 28.8 3.2 38 60-97 87-126 (146)
59 1k6k_A ATP-dependent CLP prote 70.9 3.5 0.00012 27.8 3.2 34 59-92 84-117 (143)
60 3zri_A CLPB protein, CLPV; cha 68.5 3.9 0.00013 29.4 3.1 32 60-91 104-136 (171)
61 1khy_A CLPB protein; alpha hel 67.2 7.3 0.00025 26.3 4.2 39 59-97 87-126 (148)
62 2vxz_A Pyrsv_GP04; viral prote 61.9 15 0.00052 26.6 5.1 43 58-100 75-117 (165)
63 2y1q_A CLPC N-domain, negative 61.6 8.2 0.00028 26.1 3.6 33 59-91 84-116 (150)
64 1r6b_X CLPA protein; AAA+, N-t 61.5 9.2 0.00032 32.9 4.7 40 59-98 6-45 (758)
65 2v1u_A Cell division control p 59.6 27 0.00093 26.4 6.7 62 27-88 203-274 (387)
66 3kw6_A 26S protease regulatory 49.6 20 0.00068 21.7 3.6 23 66-88 49-71 (78)
67 1g8p_A Magnesium-chelatase 38 48.7 29 0.00098 26.2 5.1 46 42-87 267-319 (350)
68 2qby_A CDC6 homolog 1, cell di 44.9 44 0.0015 25.1 5.7 62 28-89 200-271 (386)
69 3uk6_A RUVB-like 2; hexameric 43.6 66 0.0023 24.4 6.6 62 28-89 262-329 (368)
70 3pxg_A Negative regulator of g 43.0 21 0.00073 29.1 3.8 39 59-97 10-50 (468)
71 2dzn_B 26S protease regulatory 41.6 33 0.0011 21.0 3.8 45 41-89 23-67 (82)
72 3fwb_A Cell division control p 41.2 69 0.0024 20.5 7.7 49 60-108 95-149 (161)
73 3pxg_A Negative regulator of g 39.2 14 0.00047 30.2 2.0 33 60-92 85-117 (468)
74 3pxi_A Negative regulator of g 38.3 16 0.00053 31.6 2.3 32 59-90 10-41 (758)
75 3k1j_A LON protease, ATP-depen 37.3 74 0.0025 26.7 6.4 30 60-89 345-374 (604)
76 1qvr_A CLPB protein; coiled co 36.9 24 0.00084 31.0 3.4 34 59-92 10-43 (854)
77 3f8t_A Predicted ATPase involv 33.8 78 0.0027 26.8 5.8 83 24-108 393-499 (506)
78 3pxi_A Negative regulator of g 30.6 22 0.00075 30.7 2.0 34 59-92 84-117 (758)
79 1r6b_X CLPA protein; AAA+, N-t 30.6 33 0.0011 29.4 3.2 34 59-92 84-117 (758)
80 3f9v_A Minichromosome maintena 30.5 24 0.00083 29.9 2.2 47 42-88 521-585 (595)
81 2krk_A 26S protease regulatory 30.0 61 0.0021 20.2 3.6 40 45-88 40-79 (86)
82 3vlf_B 26S protease regulatory 29.5 49 0.0017 20.6 3.1 35 50-88 35-69 (88)
83 1lv7_A FTSH; alpha/beta domain 29.2 48 0.0016 24.0 3.5 27 62-88 224-250 (257)
84 2qby_B CDC6 homolog 3, cell di 27.9 1.4E+02 0.0048 22.5 6.1 60 28-89 200-269 (384)
85 3bos_A Putative DNA replicatio 27.9 1.3E+02 0.0043 20.7 5.5 47 42-89 193-242 (242)
86 1ixz_A ATP-dependent metallopr 27.6 58 0.002 23.4 3.7 27 61-87 227-253 (254)
87 1iy2_A ATP-dependent metallopr 27.0 59 0.002 23.9 3.7 26 62-87 252-277 (278)
88 3aji_B S6C, proteasome (prosom 26.3 43 0.0015 20.3 2.4 35 50-88 35-69 (83)
89 2r2i_A Guanylyl cyclase-activa 25.0 1.1E+02 0.0037 20.7 4.6 39 60-98 130-168 (198)
90 3h4m_A Proteasome-activating n 24.8 64 0.0022 23.5 3.5 28 61-88 229-256 (285)
91 1jba_A GCAP-2, protein (guanyl 23.4 1.2E+02 0.0042 20.5 4.6 40 59-98 146-185 (204)
92 3nbx_X ATPase RAVA; AAA+ ATPas 21.8 2.7E+02 0.0092 23.0 7.0 45 42-86 225-282 (500)
93 1s1e_A KV channel interacting 21.8 1E+02 0.0036 21.7 4.1 38 61-98 173-210 (224)
94 1f6v_A DNA transposition prote 21.2 16 0.00055 24.0 -0.5 29 59-88 49-77 (91)
95 1top_A Troponin C; contractIle 21.0 1.7E+02 0.0058 18.5 6.6 75 22-98 50-139 (162)
96 2ly8_A Budding yeast chaperone 20.8 1.9E+02 0.0064 19.7 4.9 42 40-81 24-68 (121)
97 1fnn_A CDC6P, cell division co 20.7 2.2E+02 0.0077 21.2 6.0 61 28-88 196-272 (389)
98 2c9o_A RUVB-like 1; hexameric 20.6 69 0.0023 25.8 3.1 62 27-88 368-435 (456)
No 1
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=8.1e-49 Score=282.80 Aligned_cols=123 Identities=89% Similarity=1.300 Sum_probs=104.8
Q ss_pred CCCCCC-CCCCCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q psy3662 1 MSGRGK-GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRII 79 (132)
Q Consensus 1 m~~k~~-~~~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~It 79 (132)
|||+++ +++.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 899876 5556667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHhhhcCCeecCCCcCCCCcccccCCccccc
Q psy3662 80 PRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETA 123 (132)
Q Consensus 80 p~~i~~AI~~D~EL~~L~~~~~ia~ggv~P~i~~~~~~~k~~~~ 123 (132)
|+||++||+||+|||+||+++||++|||+|+||++|++++.++|
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 99999999999999999999999999999999999999998765
No 2
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=1.4e-48 Score=279.56 Aligned_cols=122 Identities=90% Similarity=1.308 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechh
Q psy3662 2 SGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPR 81 (132)
Q Consensus 2 ~~k~~~~~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~ 81 (132)
||+|++++.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 56777677777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcHHHHhhhcCCeecCCCcCCCCcccccCCccccc
Q psy3662 82 HIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETA 123 (132)
Q Consensus 82 ~i~~AI~~D~EL~~L~~~~~ia~ggv~P~i~~~~~~~k~~~~ 123 (132)
||++||+||+|||+||+++||++|||+|+||++|++|+.+++
T Consensus 81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~~ 122 (123)
T 2nqb_C 81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 122 (123)
T ss_dssp HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC----
T ss_pred HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCcccccC
Confidence 999999999999999999999999999999999999988765
No 3
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.4e-48 Score=277.37 Aligned_cols=119 Identities=66% Similarity=1.000 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceech
Q psy3662 1 MSGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIP 80 (132)
Q Consensus 1 m~~k~~~~~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp 80 (132)
||||+ ++.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 89886 3445668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcHHHHhhhcCCeecCCCcCCCCcccccCCccc
Q psy3662 81 RHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSE 121 (132)
Q Consensus 81 ~~i~~AI~~D~EL~~L~~~~~ia~ggv~P~i~~~~~~~k~~ 121 (132)
+||++||+||+|||+||+++||++|||+|+||++|++|+.+
T Consensus 79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 99999999999999999999999999999999999999764
No 4
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=5.9e-48 Score=283.69 Aligned_cols=124 Identities=88% Similarity=1.272 Sum_probs=104.1
Q ss_pred CCCCCCC-CCCCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q psy3662 1 MSGRGKG-GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRII 79 (132)
Q Consensus 1 m~~k~~~-~~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~It 79 (132)
|||++++ ++.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+
T Consensus 20 ~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrIt 99 (149)
T 2f8n_K 20 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 99 (149)
T ss_dssp --------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 8888764 556667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHhhhcCCeecCCCcCCCCcccccCCcccccC
Q psy3662 80 PRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETAK 124 (132)
Q Consensus 80 p~~i~~AI~~D~EL~~L~~~~~ia~ggv~P~i~~~~~~~k~~~~~ 124 (132)
|+||++||+||+|||+||+++||++|||+|+||++|++|+.++++
T Consensus 100 prhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~~ 144 (149)
T 2f8n_K 100 PRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 144 (149)
T ss_dssp HHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC------
T ss_pred HHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCccccccc
Confidence 999999999999999999999999999999999999999987665
No 5
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=3e-47 Score=275.20 Aligned_cols=122 Identities=76% Similarity=1.154 Sum_probs=107.5
Q ss_pred CCCCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 8 GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 8 ~~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
++.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||
T Consensus 9 ~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI 88 (131)
T 1id3_C 9 GSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAI 88 (131)
T ss_dssp -------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHhhhcCCeecCCCcCCCCcccccCCcccccCCCCCCCC
Q psy3662 88 RNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETAKGKSNSQE 131 (132)
Q Consensus 88 ~~D~EL~~L~~~~~ia~ggv~P~i~~~~~~~k~~~~~~~~~~~~ 131 (132)
+||+|||+||+++||++|||+|+||++|++|+.++++ +.+|+
T Consensus 89 ~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~~--~~~~~ 130 (131)
T 1id3_C 89 RNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT--KASQE 130 (131)
T ss_dssp HTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSCC-------
T ss_pred hccHHHHHHhcCceecCCccCCCccHHHcCccccccc--ccccc
Confidence 9999999999999999999999999999999887654 44555
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=8.6e-47 Score=271.91 Aligned_cols=123 Identities=62% Similarity=0.914 Sum_probs=99.3
Q ss_pred CCCCCCC---CCCCCccCCcccccccccchhHHHHHHhhCCcc-cccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3662 1 MSGRGKG---GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKT 76 (132)
Q Consensus 1 m~~k~~~---~~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~-~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k 76 (132)
|||+..+ ++.+++.+|+|+|+||||||+||+|||++++++ +||+++|+|||+||||||++||+|+|+|.|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7866432 234556789999999999999999999999877 599999999999999999999999999999999999
Q ss_pred eechhhhhhhhcCcHHHHhhhcCCeecCCCcCCCCcccccCCcccccC
Q psy3662 77 RIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETAK 124 (132)
Q Consensus 77 ~Itp~~i~~AI~~D~EL~~L~~~~~ia~ggv~P~i~~~~~~~k~~~~~ 124 (132)
+|+|+||++||+||+||++||+ .||++|||+|+||++|++|++++|+
T Consensus 81 rItprhi~lAI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~~~ 127 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQKT 127 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHHCC-SEETTCCCCCCCCGGGC--------
T ss_pred eEcHHHHHHHHhccHHHhhhhc-ceecCCccCCCCCHHhcCcccccCC
Confidence 9999999999999999999995 5999999999999999999988754
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2.1e-36 Score=230.55 Aligned_cols=98 Identities=63% Similarity=0.989 Sum_probs=93.9
Q ss_pred ccCCcccccccccchhHHHHHHhhCCcc-cccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcH
Q psy3662 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 13 ~~~s~s~ragl~fPv~ri~rllk~~~~~-~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~ 91 (132)
+.+|+|+|+||+|||+||+|+|++++++ +||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 4579999999999999999999998786 699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCeecCCCcCCCC
Q psy3662 92 ELNKLLNGVTIAQGGVLPNI 111 (132)
Q Consensus 92 EL~~L~~~~~ia~ggv~P~i 111 (132)
|||+||+ .||++|||+|+|
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999995 699999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.91 E-value=3.1e-25 Score=201.62 Aligned_cols=101 Identities=29% Similarity=0.467 Sum_probs=82.5
Q ss_pred CccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcH
Q psy3662 12 TKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 12 ~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~ 91 (132)
+...|+|+||||+|||+||||+| +++|++||+++|+|||+||||||++||||||||+|++.++.+|+|+||++|++||+
T Consensus 92 ~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 92 SAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCS
T ss_pred HhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCH
Confidence 34578999999999999999999 77899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCeecCCCcCCCCccc
Q psy3662 92 ELNKLLNGVTIAQGGVLPNIQAV 114 (132)
Q Consensus 92 EL~~L~~~~~ia~ggv~P~i~~~ 114 (132)
||..||+.. ...+|++|.....
T Consensus 171 eL~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 171 VLMDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp SHHHHCC----------------
T ss_pred HHHHHHhhc-cccccCCCCcccc
Confidence 999999655 4566788765543
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=7.6e-24 Score=145.83 Aligned_cols=81 Identities=17% Similarity=0.357 Sum_probs=62.3
Q ss_pred cccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhh
Q psy3662 17 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKL 96 (132)
Q Consensus 17 ~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L 96 (132)
++.+++++||++||+|+||.+.+..|||.+|++|+++++|||+.||+++|++.|.+.++++|+|+||..||.+|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 35688999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q psy3662 97 L 97 (132)
Q Consensus 97 ~ 97 (132)
+
T Consensus 84 ~ 84 (98)
T 1jfi_A 84 K 84 (98)
T ss_dssp -
T ss_pred H
Confidence 8
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.80 E-value=9e-20 Score=125.13 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=71.7
Q ss_pred cccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhh
Q psy3662 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLL 97 (132)
Q Consensus 19 ~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~ 97 (132)
.-.+++||++||+|+||.+.+..|||.+|++|+++++|||+.+|++.|++.|.+.++++|+++||..||.+|++|++|.
T Consensus 14 ~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3457899999999999999888999999999999999999999999999999999999999999999999999999998
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.79 E-value=1.4e-19 Score=125.48 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=62.6
Q ss_pred CCCCCCCCC-------CCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3662 1 MSGRGKGGK-------AKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDN 73 (132)
Q Consensus 1 m~~k~~~~~-------~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~ 73 (132)
|||||+++| ++++++++++.++ ||++.|+|+++... ..|||.+|.++|+.+|||++.+|++.|.++|+|+
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888766443 3566778999999 99999999999974 5899999999999999999999999999999999
Q ss_pred CCceechhhhhhhhcCcH
Q psy3662 74 KKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 74 ~~k~Itp~~i~~AI~~D~ 91 (132)
++++|+++||.+|+.+..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999998654
No 12
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.79 E-value=3.1e-19 Score=123.69 Aligned_cols=87 Identities=26% Similarity=0.410 Sum_probs=70.0
Q ss_pred CCCCCCCCC-------CCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3662 1 MSGRGKGGK-------AKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDN 73 (132)
Q Consensus 1 m~~k~~~~~-------~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~ 73 (132)
|||+++++| ++++++++++.++ ||++.|+|+++... ..|||.+|.++|+.+|||++.+|++.|.++|+|+
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888765433 3666789999999 89999999999974 5899999999999999999999999999999999
Q ss_pred CCceechhhhhhhhcCc
Q psy3662 74 KKTRIIPRHIQLAIRND 90 (132)
Q Consensus 74 ~~k~Itp~~i~~AI~~D 90 (132)
++++|+++||.+|+.+.
T Consensus 78 kRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp TCSEECHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHc
Confidence 99999999999999754
No 13
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.78 E-value=4.7e-19 Score=125.68 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=72.6
Q ss_pred cccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhh
Q psy3662 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLL 97 (132)
Q Consensus 23 l~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~ 97 (132)
.+||++||+|+||.+.+..+|+.+|++|+++++|||+.+|++.|++.|...++++|+|+||..||.+|++|++|.
T Consensus 40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 40 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 479999999999998889999999999999999999999999999999999999999999999999999999886
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.71 E-value=4.1e-18 Score=123.94 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=62.4
Q ss_pred ccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHH-HhcCCceechhhhhhhhcCcH
Q psy3662 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAA-RDNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 13 ~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A-~~~~~k~Itp~~i~~AI~~D~ 91 (132)
+..+++.+.+++||++||+|+||.+....+|+.+|+++++.++|+|+.+|++.|++.| ...++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4578888999999999999999998888999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q psy3662 92 ELNKLL 97 (132)
Q Consensus 92 EL~~L~ 97 (132)
+|++|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999998
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.53 E-value=1e-14 Score=107.45 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=67.8
Q ss_pred cccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCc
Q psy3662 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRND 90 (132)
Q Consensus 19 ~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D 90 (132)
.+.++.||++.|.|+|+++ +..|||++|.++|+.+||+|+.+|+..|.++|.+.+|++|+++||.+|+.++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999998 7899999999999999999999999999999999999999999999999764
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.39 E-value=1.2e-12 Score=90.38 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=65.0
Q ss_pred CCCCccCCcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 9 KAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 9 ~~~~~~~s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.++++++.+.+..+ +|.+.|.|++++. ...|||.++...|+.+|||++.+|+..|..+|+|.++++|+++||.+|+.
T Consensus 15 ~kr~~k~~r~~i~~--ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALk 91 (102)
T 1id3_B 15 AKRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91 (102)
T ss_dssp ---------CCGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchHHHHHHhccCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 35677788877777 7888899999996 67999999999999999999999999999999999999999999999986
Q ss_pred Cc
Q psy3662 89 ND 90 (132)
Q Consensus 89 ~D 90 (132)
..
T Consensus 92 r~ 93 (102)
T 1id3_B 92 RQ 93 (102)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.37 E-value=1.6e-12 Score=83.81 Aligned_cols=65 Identities=34% Similarity=0.446 Sum_probs=62.2
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
.||.+.|+|++++. ...|+|.++...|..++|+++.+|++.|..+|.|.+|++|+++||.+|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 68999999999996 688999999999999999999999999999999999999999999999864
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.32 E-value=5.2e-12 Score=80.75 Aligned_cols=64 Identities=31% Similarity=0.424 Sum_probs=61.3
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.||.++|.|+||+. ...||+.+|...|..++|+++.+|.+.|...|.+.++++|+|+||..|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 48999999999998 67899999999999999999999999999999999999999999999985
No 19
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.16 E-value=1.5e-10 Score=77.05 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=65.1
Q ss_pred CcccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCc
Q psy3662 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRND 90 (132)
Q Consensus 16 s~s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D 90 (132)
-+.+..| +|.+.|+|++++. ...|||.++...|+.++|+++.+|+..|..+++|.++++|+++||.+|+...
T Consensus 4 ~r~~~~~--ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 4 LRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGGCCS--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred ccccCCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3455556 6788899999997 6799999999999999999999999999999999999999999999999764
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.07 E-value=2.9e-10 Score=76.84 Aligned_cols=68 Identities=12% Similarity=0.283 Sum_probs=62.3
Q ss_pred cccccchhHHHHHHhhC-CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 21 AGLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 21 agl~fPv~ri~rllk~~-~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
..+.||.++|.|+||+. ....||+.+|...|+.+.|.|+.+|...|...|.+.+|++|+++||..|+.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 35789999999999997 334799999999999999999999999999999999999999999999996
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.99 E-value=1.5e-09 Score=70.23 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=61.8
Q ss_pred cccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 23 l~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
-.||+..|+++.+.. +..+|+++|...|+.-+||-+.||++.|.+.++|.+|+++|++||+.|+.
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 479999999999996 68999999999999999999999999999999999999999999999874
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.98 E-value=1.1e-09 Score=80.64 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=60.9
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
-||.+.|.|++|+.-...|||.+|...|+.++|.|+.+|...|.+.|.+.+||+|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4899999999999745699999999999999999999999999999999999999999999998
No 23
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.95 E-value=1.7e-09 Score=70.58 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=60.5
Q ss_pred cccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 23 l~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
-.||.+.|.|+|++.....+||.+|...|..++|.|+.+|...|...|.+.++++|+++||..|+.
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 368999999999975345799999999999999999999999999999999999999999999984
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.87 E-value=1.8e-09 Score=77.11 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=62.5
Q ss_pred ccccchhHHHHHHhh-CCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHH
Q psy3662 22 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELN 94 (132)
Q Consensus 22 gl~fPv~ri~rllk~-~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~ 94 (132)
.+.||+++|.|+|++ .....+||.+|...|+.+.|.|+.+|...|...|.+.+|++|+++||..|+...+-++
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 578999999999996 3346799999999999999999999999999999999999999999999997655333
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.79 E-value=3.3e-09 Score=74.06 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=61.8
Q ss_pred ccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHH
Q psy3662 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEEL 93 (132)
Q Consensus 22 gl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL 93 (132)
.+-||.+-|.|++++. ...|||.++...|..+++.++.+|...|..+|+|.+|++|+++||.+|++.+..+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 3568999999999997 6789999999999999999999999999999999999999999999999876544
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.73 E-value=3e-08 Score=63.65 Aligned_cols=60 Identities=18% Similarity=0.099 Sum_probs=56.8
Q ss_pred HHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 29 RIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 29 ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
.|+++|++. +++|++..++.-|...++-.+.+|+..|..+|.|.|+++|+.+||++||+.
T Consensus 6 ~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 589999996 689999999999999999999999999999999999999999999999963
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.51 E-value=2e-07 Score=69.92 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=66.2
Q ss_pred ccccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhh
Q psy3662 18 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKL 96 (132)
Q Consensus 18 s~ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L 96 (132)
..-..+.||++.|.|+|++..-..||+.+|...|..+++-|+..|...|...|.+.+|++|+++||..|+. +-+|..+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~f 86 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSY 86 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGG
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHH
Confidence 34456889999999999996224799999999999999999999999999999999999999999999996 4444433
No 28
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.41 E-value=5e-07 Score=63.19 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.5
Q ss_pred ccccccchhHHHHHHhhCCcccc---cccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhh
Q psy3662 20 RAGLQFPVGRIHRLLRKGNYAER---VGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKL 96 (132)
Q Consensus 20 ragl~fPv~ri~rllk~~~~~~R---Vs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L 96 (132)
++.|.+.|++ ++++. ...| ||.++...|+.+++..+.+|..-+...|+|.||++|+++||.++++.++.|..+
T Consensus 26 Kaal~y~V~r---Ivke~-gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~ 101 (113)
T 4dra_A 26 KAAVHYTVGC---LCEEV-ALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKY 101 (113)
T ss_dssp HHHHHHHHHH---HHHHH-HHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHH---HHHHH-HHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHH
Confidence 3455666554 44453 3445 999999999999999999999999999999999999999999999999999887
Q ss_pred hc
Q psy3662 97 LN 98 (132)
Q Consensus 97 ~~ 98 (132)
+.
T Consensus 102 l~ 103 (113)
T 4dra_A 102 IT 103 (113)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 29
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=8.8e-07 Score=59.68 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=63.3
Q ss_pred cccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhcC
Q psy3662 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNG 99 (132)
Q Consensus 21 agl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~~ 99 (132)
+.|.+-|++|-.=.-+. ....||..+...|+.+++..+.+|.+-+...|+|.||++|+++||.++++.++.|..++.+
T Consensus 12 aal~~~V~ki~~e~~~~-~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 12 ARLWIRVEERLQQVLSS-EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHSCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHh-cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 44555665554333111 1246999999999999999999999999999999999999999999999999999998754
No 30
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.38 E-value=8.6e-07 Score=58.12 Aligned_cols=66 Identities=26% Similarity=0.259 Sum_probs=59.2
Q ss_pred cccchhHHHHHHhhC----CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 23 LQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 23 l~fPv~ri~rllk~~----~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
|.+|...+.|++++- ....|++++|...|..+.|.++-++.|.+...|.|.++.+|+|+||++|..
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 568888899998873 135799999999999999999999999999999999999999999999863
No 31
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.36 E-value=7.3e-07 Score=59.11 Aligned_cols=66 Identities=23% Similarity=0.158 Sum_probs=59.2
Q ss_pred cccchhHHHHHHhhCC------cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 23 LQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 23 l~fPv~ri~rllk~~~------~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
|.+|...+.|++++-. ...|++++|...|..+.|.++-++.|-|...|.|.++.+|+|+||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 4678888999998743 35699999999999999999999999999999999999999999999863
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.30 E-value=1.4e-06 Score=60.41 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=62.0
Q ss_pred cccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhc
Q psy3662 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98 (132)
Q Consensus 21 agl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~ 98 (132)
+.|.+-|++|-+-.-.. ...||+..+...|+.+++.++.+|..-+..+|+|.||++|+++||.++++.++.|...+.
T Consensus 19 aal~~~V~rI~~~~g~~-~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAED-KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 34555554443322111 125999999999999999999999999999999999999999999999999999987664
No 33
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.2e-06 Score=60.61 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=48.6
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 38 NYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 38 ~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.++.|||.++...+..+||.++.+|+..|..++.|.++|+||++||.+|++
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999975
No 34
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=7.6e-07 Score=69.17 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=55.4
Q ss_pred HHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCc
Q psy3662 30 IHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRND 90 (132)
Q Consensus 30 i~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D 90 (132)
+.|+++++ .+.|||.++...+..+||.++.+|+..|..+|.+.++++||++||.+|+..-
T Consensus 167 ~~RlaRrg-GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 167 DEEDGDKG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CCTTSCCT-TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHhhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 45888886 6899999999999999999999999999999999999999999999998643
No 35
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.20 E-value=2.4e-06 Score=61.75 Aligned_cols=68 Identities=22% Similarity=0.149 Sum_probs=61.4
Q ss_pred cccccchhHHHHHHhhCC------cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 21 agl~fPv~ri~rllk~~~------~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.+|.||...|.|++++-. ...|++++|...|..+.|.++.+++|.|...|.|.++.+|+|+||++|..
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 478899999999998743 35799999999999999999999999999999999999999999999864
No 36
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.20 E-value=2e-06 Score=63.06 Aligned_cols=71 Identities=21% Similarity=0.125 Sum_probs=62.7
Q ss_pred cccccchhHHHHHHhhCC------cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcH
Q psy3662 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 21 agl~fPv~ri~rllk~~~------~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~ 91 (132)
.+|.||...|.|++++.. ...|++++|...|..+.|.++.+++|.|...|.|.++.+|+|+||++|..--.
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 478899999999998732 25699999999999999999999999999999999999999999999875433
No 37
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.19 E-value=2.9e-06 Score=58.18 Aligned_cols=68 Identities=24% Similarity=0.194 Sum_probs=57.9
Q ss_pred cccccchhHHHHHHhhCC-------cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 21 AGLQFPVGRIHRLLRKGN-------YAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 21 agl~fPv~ri~rllk~~~-------~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.+|.+|...+.|++++-. ...|++++|...|..+.|.++-+++|.+...|.|.++.+|+|.||++|..
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 578899999999998732 15699999999999999999999999999999999999999999999863
No 38
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.10 E-value=6.8e-06 Score=59.13 Aligned_cols=68 Identities=26% Similarity=0.272 Sum_probs=61.2
Q ss_pred cccccchhHHHHHHhhC----CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 21 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 21 agl~fPv~ri~rllk~~----~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.+|.||...|.|++++- ....|++++|...|..+.|.++-+++|.+...|.|.++.+|.|+||++|..
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 36789999999999874 124699999999999999999999999999999999999999999999863
No 39
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.07 E-value=5.5e-06 Score=59.81 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred ccccccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhcC
Q psy3662 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNG 99 (132)
Q Consensus 20 ragl~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~~ 99 (132)
++.|.+-|++|-.=.-.. ....|+.++...|+.+++.++.+|..-+..+|+|.||++|+++||.++++.++.|..++..
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 345556665554322111 1236999999999999999999999999999999999999999999999999999998853
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.89 E-value=2.5e-05 Score=55.18 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=54.9
Q ss_pred hHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 28 GRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 28 ~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
..|+++|++-.-...||+.|...|..+++.+...|...|...|+.+++++|++++|+.|+
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAv 96 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAV 96 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHH
Confidence 468999998533348999999999999999999999999999999999999999999998
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.83 E-value=3.6e-05 Score=54.62 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=57.1
Q ss_pred cccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 23 l~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
-.|.+ .|+++|++-.-...||+.|...|..+++.+...|...|...|+.+++++||+++|+.|+
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAv 99 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 99 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 34555 79999999533348999999999999999999999999999999999999999999998
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.33 E-value=0.00034 Score=52.65 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=55.2
Q ss_pred hHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 28 GRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 28 ~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
..|+|+|++..-...||..|..+|...+..++..|...|...+..+++++||++||+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999986434689999999999999999999999999999999999999999999985
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.05 E-value=0.0012 Score=44.02 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=54.8
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceechhhhhhhhc
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDN-KKTRIIPRHIQLAIR 88 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~-~~k~Itp~~i~~AI~ 88 (132)
.||-..|+|++..- ....|+.+..+.|+++--.|+.||+|.|....... ....|.|.||+.|..
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 57777799999874 57799999999999999999999999999986665 455899999999873
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.75 E-value=0.0066 Score=40.11 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=57.0
Q ss_pred ccccccchhHHHHHHhhCC--cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 20 RAGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 20 ragl~fPv~ri~rllk~~~--~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
.++..||..=|.|+|+..- ...||+.+|...++..|+.|+.|.+..|...|...+...|..+|++...
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 3467899999999999631 1249999999999999999999999999999998888899999999643
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.64 E-value=0.0094 Score=39.06 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=56.6
Q ss_pred ccccchhHHHHHHhhCC--cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhh
Q psy3662 22 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLA 86 (132)
Q Consensus 22 gl~fPv~ri~rllk~~~--~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~A 86 (132)
+..||..=|.|+|+..- ...||+.+|..-++..|+.|+.|.+..|...|...+...|..+|++..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 45799999999999731 134999999999999999999999999999998889899999999974
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.90 E-value=0.022 Score=36.84 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=59.1
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
.++-.++..++++-.....+..++-..|..+.+-|+..+++.|...|+|-+..++.+.|+++.+..
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 567788999999865567999999999999999999999999999999999999999999987643
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.035 Score=42.97 Aligned_cols=66 Identities=23% Similarity=0.166 Sum_probs=54.7
Q ss_pred ccccchhHHHHHHhhC----Cc---ccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 22 GLQFPVGRIHRLLRKG----NY---AERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 22 gl~fPv~ri~rllk~~----~~---~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
.|.+|-.++.|++++- .. ..|..++|...|.-+-|.++-.++|-+.-.|.|.++.+|.|.|+++|-
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 4677777788877651 11 248899999999999999999999999999999999999999999983
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=91.14 E-value=0.68 Score=33.37 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=52.5
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhh
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQ 84 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~ 84 (132)
.+++.+++++++.. ..--|..+-.--+..++|--+.+++..|-..|+.+++..|.|.|+-
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP 61 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP 61 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 57889999999985 3446778888888999999999999999999999999999999975
No 49
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=87.65 E-value=0.71 Score=31.43 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhc
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~ 98 (132)
+.++++.|.+.|...+...|+|+||-+|+-.+++...++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4578899999999999999999999999988877666554
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=86.75 E-value=0.67 Score=34.12 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=53.0
Q ss_pred ccchhHHHHHHhhCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhh
Q psy3662 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQ 84 (132)
Q Consensus 24 ~fPv~ri~rllk~~~~~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~ 84 (132)
.+++.+++|+++.. ..--|..+-.--+..+++--+.+++..|-..|+.++|..|.|.|+-
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP 85 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN 85 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 88999999999985 3446777777788899999999999999999999999999999975
No 51
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=82.79 E-value=1 Score=30.70 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcH
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~ 91 (132)
+.++++.|...|...+...|+|+||-+|+-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357889999999999999999999999997665
No 52
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=81.75 E-value=0.78 Score=31.71 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcH--HHHhhh
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDE--ELNKLL 97 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~--EL~~L~ 97 (132)
+.++++.|.+.|...+...|+|+||-+|+-.++ ....++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 52 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVL 52 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHH
Confidence 457889999999999999999999999997654 344444
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=80.11 E-value=1.3 Score=30.38 Aligned_cols=39 Identities=31% Similarity=0.309 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHH--HHhhh
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE--LNKLL 97 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E--L~~L~ 97 (132)
+.++++.|.+.|...+...|+|+||-+|+-.+++ ...++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHH
Confidence 3578889999999999999999999999966543 44444
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=79.52 E-value=0.92 Score=31.30 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCc--HHHHhhh
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRND--EELNKLL 97 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D--~EL~~L~ 97 (132)
+.++++.|.+.|...+...|+|+||-+|+-.+ .....++
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 51 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKAL 51 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHH
Confidence 35788999999999999999999999999765 3444444
No 55
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=78.33 E-value=9.6 Score=25.02 Aligned_cols=48 Identities=8% Similarity=0.173 Sum_probs=38.6
Q ss_pred cchhHHHHHHhhCCc--ccccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3662 25 FPVGRIHRLLRKGNY--AERVGAGAPVYLAAVLEYLVAEVLELAGNAARD 72 (132)
Q Consensus 25 fPv~ri~rllk~~~~--~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~ 72 (132)
+|..-+.|+|...-- .-||+.+|...++..++-|+.|-+-.|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577889999985311 239999999999999999999999888765544
No 56
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=77.89 E-value=1.8 Score=31.19 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhcCCceechhhhhhhhcCcH--HHHhhh
Q psy3662 51 LAAVLEYLV---AEVLELAGNAARDNKKTRIIPRHIQLAIRNDE--ELNKLL 97 (132)
Q Consensus 51 LaavLEyl~---~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~--EL~~L~ 97 (132)
+...++-|+ .++++.|.+.|...+...|+|+||-+|+-.++ ....++
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL 69 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVL 69 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHH
Confidence 344444443 46889999999999999999999999998764 344444
No 57
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=74.55 E-value=2 Score=29.52 Aligned_cols=39 Identities=41% Similarity=0.476 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHH--HHhhh
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE--LNKLL 97 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E--L~~L~ 97 (132)
+..+|+.|...|...+...|+++||-+|+-.|++ ...++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL 126 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKIL 126 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHH
Confidence 3567889999999999999999999999976543 44454
No 58
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=73.61 E-value=2.8 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCceechhhhhhhhcCcH--HHHhhh
Q psy3662 60 AEVLELAGNAARDNKKTRIIPRHIQLAIRNDE--ELNKLL 97 (132)
Q Consensus 60 ~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~--EL~~L~ 97 (132)
..+|+.|...|...+...|+++||-+|+-.|+ ....++
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL 126 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVL 126 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHH
Confidence 47888899999999999999999999997554 344455
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=70.92 E-value=3.5 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHH
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E 92 (132)
+..+|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~ 117 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcC
Confidence 3568899999999999999999999999986653
No 60
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=68.54 E-value=3.9 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHH-hcCCceechhhhhhhhcCcH
Q psy3662 60 AEVLELAGNAAR-DNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 60 ~eIlelA~~~A~-~~~~k~Itp~~i~~AI~~D~ 91 (132)
.++|+.|..+|. ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 468899999999 99999999999999998777
No 61
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=67.18 E-value=7.3 Score=26.26 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcC-cHHHHhhh
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRN-DEELNKLL 97 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~-D~EL~~L~ 97 (132)
+..+++.|...|...+...|+++|+-+|+-. |.....++
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L 126 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADIL 126 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHH
Confidence 4567889999999999999999999999984 33344444
No 62
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=61.91 E-value=15 Score=26.61 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhcCC
Q psy3662 58 LVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGV 100 (132)
Q Consensus 58 l~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~~~ 100 (132)
.+.+|++.-...-...|.+-|+|.++..-|..|.|-..+|.+.
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~~ 117 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSSI 117 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHHh
Confidence 6677777777777888999999999999999999999999543
No 63
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=61.62 E-value=8.2 Score=26.13 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcH
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDE 91 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~ 91 (132)
+..+++.|...|...+...|+++|+-+|+-.+.
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 456888999999999999999999999997554
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.47 E-value=9.2 Score=32.93 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhc
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~ 98 (132)
+.++|+.|.+.|...+...|+|+||-+|+-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4578899999999999999999999999988887666653
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.56 E-value=27 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=45.1
Q ss_pred hhHHHHHHhhC----CcccccccChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 27 VGRIHRLLRKG----NYAERVGAGAPVYLAAVLE------YLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 27 v~ri~rllk~~----~~~~RVs~~A~vyLaavLE------yl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
...+..+++.. .....++.++..+++.... ..+..+++.|+..|...+...|+.+|+..|+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 45566666542 1123577888888887776 55668888888888887888999999998874
No 66
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=49.63 E-value=20 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHhcCCceechhhhhhhhc
Q psy3662 66 AGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 66 A~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
|...|-..+...|+.+|+..|+.
T Consensus 49 A~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 49 AGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Confidence 34444455778899999999884
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=48.69 E-value=29 Score=26.15 Aligned_cols=46 Identities=17% Similarity=-0.050 Sum_probs=34.1
Q ss_pred ccccChHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 42 RVGAGAPVYLAAVLEY-------LVAEVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 42 RVs~~A~vyLaavLEy-------l~~eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
.++.++..||+....- -+..+++.|...|...++..|+++|+..|+
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 5677777776665443 234677888888887888899999999876
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.91 E-value=44 Score=25.08 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=40.8
Q ss_pred hHHHHHHhh----CCcccccccChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 28 GRIHRLLRK----GNYAERVGAGAPVYLAAVLE------YLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 28 ~ri~rllk~----~~~~~RVs~~A~vyLaavLE------yl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
..+..+++. .....-++.++..+++.... ..+.+++..++..|...+...|+.+|++.|+..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 455566654 11123466677777776665 234457888888787778889999999977654
No 69
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.65 E-value=66 Score=24.35 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=41.5
Q ss_pred hHHHHHHhhCC--cccccccChHHHHHHHHH-H---HHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 28 GRIHRLLRKGN--YAERVGAGAPVYLAAVLE-Y---LVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 28 ~ri~rllk~~~--~~~RVs~~A~vyLaavLE-y---l~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
..+..+++..- ....++.++..+|+...+ . .+..+++.|...|...+...|+.+|++.|+..
T Consensus 262 ~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 262 KDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 45555555310 122477777777777665 2 33457777777787788899999999988753
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.98 E-value=21 Score=29.06 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCc--HHHHhhh
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRND--EELNKLL 97 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D--~EL~~L~ 97 (132)
+.++++.|...|...+...|+|+||-+|+-.+ .....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 45788899999999999999999999998654 3344444
No 71
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=41.55 E-value=33 Score=20.99 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=29.1
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 41 ERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 41 ~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
..+...+.-|-.|=|+.++.|-...| -..+...|+.+|+..|+..
T Consensus 23 ~~lA~~t~G~SGADi~~l~~eAa~~a----i~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 23 DSLIIRNDSLSGAVIAAIMQEAGLRA----VRKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTTSSCCCCHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH----HHhccCCcCHHHHHHHHHH
Confidence 34555555566677777666654444 3446678999999988743
No 72
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=41.22 E-value=69 Score=20.53 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCceechhhhhhhhc------CcHHHHhhhcCCeecCCCcC
Q psy3662 60 AEVLELAGNAARDNKKTRIIPRHIQLAIR------NDEELNKLLNGVTIAQGGVL 108 (132)
Q Consensus 60 ~eIlelA~~~A~~~~~k~Itp~~i~~AI~------~D~EL~~L~~~~~ia~ggv~ 108 (132)
.+.+..+.+.....+...|+.+++..++. .++++..+|.....-..|.+
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i 149 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEI 149 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSE
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC
Confidence 34555666666666777899999998875 66788888865444334443
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.16 E-value=14 Score=30.25 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCceechhhhhhhhcCcHH
Q psy3662 60 AEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92 (132)
Q Consensus 60 ~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E 92 (132)
.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 85 ~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 467889999999999999999999999976653
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.25 E-value=16 Score=31.62 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCc
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRND 90 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D 90 (132)
+.++++.|.+.|...+...|+|+||-+|+-.+
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 35688899999999999999999999998654
No 75
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=37.31 E-value=74 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 60 AEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 60 ~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
..+++.|...|...++..|+++|+..|+..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 357888888888889999999999999854
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=36.85 E-value=24 Score=30.98 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHH
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E 92 (132)
+.++|+.|...|...+...|+|+||-+|+-.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 4568899999999999999999999999976543
No 77
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=33.80 E-value=78 Score=26.85 Aligned_cols=83 Identities=19% Similarity=0.108 Sum_probs=48.1
Q ss_pred ccchhHHHHHHhhC---CcccccccChHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCceec
Q psy3662 24 QFPVGRIHRLLRKG---NYAERVGAGAPVYLAAVLEYLV---------------------AEVLELAGNAARDNKKTRII 79 (132)
Q Consensus 24 ~fPv~ri~rllk~~---~~~~RVs~~A~vyLaavLEyl~---------------------~eIlelA~~~A~~~~~k~It 79 (132)
.++...+.+++.-. .....++..+..|+......+= .-++.+|--.|.-.++..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 35556666655432 2345788888888776654431 12666777778888999999
Q ss_pred hhhhhhhhcCcHHHHhhhcCCeecCCCcC
Q psy3662 80 PRHIQLAIRNDEELNKLLNGVTIAQGGVL 108 (132)
Q Consensus 80 p~~i~~AI~~D~EL~~L~~~~~ia~ggv~ 108 (132)
|+|++.|+.-=+ .+|..-.+.+.+|.+
T Consensus 473 ~eDV~~Ai~L~~--~Sl~~~a~dp~tg~i 499 (506)
T 3f8t_A 473 PEDVDIAAELVD--WYLETAMQIPGGDEI 499 (506)
T ss_dssp HHHHHHHHHHHH--HHHHHTTC-------
T ss_pred HHHHHHHHHHHH--HHHHHhcCCCCCCeE
Confidence 999999984221 233333344455543
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.64 E-value=22 Score=30.69 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHH
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E 92 (132)
+.++|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3567889999999999999999999999976543
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.58 E-value=33 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHH
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~E 92 (132)
+..+|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4568899999999999999999999999987653
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=30.51 E-value=24 Score=29.91 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=35.3
Q ss_pred ccccChHHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 42 RVGAGAPVYLAAVLEYL------------------VAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 42 RVs~~A~vyLaavLEyl------------------~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.++..|..+|......+ +..++.+|...|.-.++..|+++|+..|+.
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 67777776666553321 336888888889888999999999999984
No 81
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=29.96 E-value=61 Score=20.19 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=24.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 45 AGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 45 ~~A~vyLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
..+.-|-.|=|+.|+.|-...| -......|+.+|+..|+.
T Consensus 40 ~~T~G~SGADL~~l~~eAa~~a----lr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 40 ELMPGASGAEVKGVCTEAGMYA----LRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHH----HHHcCCCCCHHHHHHHHH
Confidence 3334455555655555544333 334567899999998874
No 82
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=29.49 E-value=49 Score=20.59 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 50 YLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 50 yLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
|-.|=|+.++.|-. -.|-..+...|+.+|+..|+.
T Consensus 35 ~SGADl~~l~~eAa----~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 35 STGAELRSVCTEAG----MFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp CCHHHHHHHHHHHH----HHHHHHSCSSBCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH----HHHHHhccccCCHHHHHHHHH
Confidence 33344444444433 333334667899999998883
No 83
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=29.25 E-value=48 Score=23.96 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 62 VLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 62 IlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
++..|...|...+...|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 445555556666778999999998873
No 84
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.91 E-value=1.4e+02 Score=22.46 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=37.6
Q ss_pred hHHHHHHhhC---Cc-ccccccChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 28 GRIHRLLRKG---NY-AERVGAGAPVYLAAVLE------YLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 28 ~ri~rllk~~---~~-~~RVs~~A~vyLaavLE------yl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
..+..+++.. .. ...++.++..+++.... ..+.++++.|+..|. +...|+.+|+..++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 5566666542 11 13566666666666554 124467777777765 5678999999887643
No 85
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=27.90 E-value=1.3e+02 Score=20.72 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=26.9
Q ss_pred ccccChHHHHHHHHHH---HHHHHHHHHHHHHHhcCCceechhhhhhhhcC
Q psy3662 42 RVGAGAPVYLAAVLEY---LVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89 (132)
Q Consensus 42 RVs~~A~vyLaavLEy---l~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~ 89 (132)
.++.++..+|+...+- -+..+++.+...|...+ ..|+.++++.++.+
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 4555565555544331 12244555555554444 46999999988753
No 86
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=27.59 E-value=58 Score=23.43 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 61 EVLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 61 eIlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
.++..|...|...+...|+.+|++.|+
T Consensus 227 ~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 227 NLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 344455555556667789999999876
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.99 E-value=59 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCceechhhhhhhh
Q psy3662 62 VLELAGNAARDNKKTRIIPRHIQLAI 87 (132)
Q Consensus 62 IlelA~~~A~~~~~k~Itp~~i~~AI 87 (132)
+++.|...|...+...|+.+|++.|+
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44555555556667789999999876
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=26.31 E-value=43 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 50 YLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 50 yLaavLEyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
|-.|=|+.++.| |...|-..+...|+.+|+..|+.
T Consensus 35 ~SGADi~~l~~e----A~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 35 ISGADINSICQE----SGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp CCHHHHHHHHHH----HHHGGGTSCCSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHHHHHhccCCcCHHHHHHHHH
Confidence 344444444443 23333344566799999998873
No 89
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=24.98 E-value=1.1e+02 Score=20.74 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhc
Q psy3662 60 AEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98 (132)
Q Consensus 60 ~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~ 98 (132)
.+.++.....+...+...|+.+++...+.+++++..++.
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~ 168 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILT 168 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHh
Confidence 355666666666678889999999999999999999986
No 90
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=24.78 E-value=64 Score=23.51 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 61 EVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 61 eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
.++..|...|...++..|+.+|+..|+.
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 4555666666677888999999999884
No 91
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=23.43 E-value=1.2e+02 Score=20.54 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhc
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~ 98 (132)
..+.++.....+...+...|+.+++...+.+++++..++.
T Consensus 146 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~ 185 (204)
T 1jba_A 146 PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQ 185 (204)
T ss_dssp HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHH
Confidence 3456666667676678889999999999999999999985
No 92
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=21.79 E-value=2.7e+02 Score=23.01 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=32.1
Q ss_pred ccccChHHHHHHHHHHH-------------HHHHHHHHHHHHHhcCCceechhhhhhh
Q psy3662 42 RVGAGAPVYLAAVLEYL-------------VAEVLELAGNAARDNKKTRIIPRHIQLA 86 (132)
Q Consensus 42 RVs~~A~vyLaavLEyl-------------~~eIlelA~~~A~~~~~k~Itp~~i~~A 86 (132)
.++..+..|++.+...+ ...++.+|.-.|.-.++..|+|+|+..+
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 56666666776666431 1236777777788899999999999944
No 93
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=21.77 E-value=1e+02 Score=21.74 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCceechhhhhhhhcCcHHHHhhhc
Q psy3662 61 EVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98 (132)
Q Consensus 61 eIlelA~~~A~~~~~k~Itp~~i~~AI~~D~EL~~L~~ 98 (132)
+.++.....+..++...|+-+++...+.+++.+-..|+
T Consensus 173 ~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~l~~~l~ 210 (224)
T 1s1e_A 173 QHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQ 210 (224)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhc
Confidence 44555556666677888999999999999999888775
No 94
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=21.17 E-value=16 Score=24.04 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 59 ~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
+...|.||.-.|...+.. |+..||..|-.
T Consensus 49 ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 49 LNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 446678888888777776 99999999875
No 95
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=20.97 E-value=1.7e+02 Score=18.55 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=43.0
Q ss_pred ccccchhHHHHHHhhCC--cccccccChHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCceechhhhhhhhc----
Q psy3662 22 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVLEYL-------VAEVLELAGNAARDNKKTRIIPRHIQLAIR---- 88 (132)
Q Consensus 22 gl~fPv~ri~rllk~~~--~~~RVs~~A~vyLaavLEyl-------~~eIlelA~~~A~~~~~k~Itp~~i~~AI~---- 88 (132)
|+.++-..+..+++... ....|+- ..|+..+.... ..+.+..+.......+...|+.+++..++.
T Consensus 50 ~~~~~~~~~~~~~~~~d~~~~g~i~~--~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~ 127 (162)
T 1top_A 50 GQNPTKEELDAIIEEVDEDGSGTIDF--EEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 127 (162)
T ss_dssp TCCCCHHHHHHHHHHHCTTSCCEEEH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCcEeH--HHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 34445556666665421 1234442 23333333332 344566666666667778899999987773
Q ss_pred --CcHHHHhhhc
Q psy3662 89 --NDEELNKLLN 98 (132)
Q Consensus 89 --~D~EL~~L~~ 98 (132)
.++++..+|.
T Consensus 128 ~~~~~~~~~~~~ 139 (162)
T 1top_A 128 HVTEEDIEDLMK 139 (162)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 4567777775
No 96
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=20.84 E-value=1.9e+02 Score=19.70 Aligned_cols=42 Identities=21% Similarity=0.028 Sum_probs=34.6
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc---CCceechh
Q psy3662 40 AERVGAGAPVYLAAVLEYLVAEVLELAGNAARDN---KKTRIIPR 81 (132)
Q Consensus 40 ~~RVs~~A~vyLaavLEyl~~eIlelA~~~A~~~---~~k~Itp~ 81 (132)
..|..++|...|.-+-|.++-.++|.+.-.|.|. |.+||+..
T Consensus 24 ~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~ 68 (121)
T 2ly8_A 24 DLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL 68 (121)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH
Confidence 3589999999999999999999999997777764 56676654
No 97
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=20.70 E-value=2.2e+02 Score=21.20 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=37.4
Q ss_pred hHHHHHHhhCCc----ccccccChHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 28 GRIHRLLRKGNY----AERVGAGAPVYLAAVL------------EYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 28 ~ri~rllk~~~~----~~RVs~~A~vyLaavL------------Eyl~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
..+..+++..-. ...++.++..+++... =..+.+++..|+..|...+...|+.+|+..++.
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 196 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp HHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 555566644200 1135555555555544 123457777888888777888899999987653
No 98
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.57 E-value=69 Score=25.76 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=40.9
Q ss_pred hhHHHHHHhhCCc--ccccccChHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCceechhhhhhhhc
Q psy3662 27 VGRIHRLLRKGNY--AERVGAGAPVYLAAVL-EY---LVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88 (132)
Q Consensus 27 v~ri~rllk~~~~--~~RVs~~A~vyLaavL-Ey---l~~eIlelA~~~A~~~~~k~Itp~~i~~AI~ 88 (132)
...+..+|+.... ...++.++..+++..- +- .+..+++.|...|...++..|+++|++.|+.
T Consensus 368 ~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 368 PQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 3566666754210 1235666666666644 21 3456778888888888999999999998864
Done!