RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3662
(132 letters)
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional.
Length = 134
Score = 209 bits (534), Expect = 2e-71
Identities = 97/134 (72%), Positives = 110/134 (82%), Gaps = 3/134 (2%)
Query: 1 MSGRGKGGKAKTKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEY 57
G+GK G K K +RS++AGLQFPVGR+HR L+KG YA+RVGAGAPVYLAAVLEY
Sbjct: 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEY 60
Query: 58 LVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLP 117
L AEVLELAGNAA+DNKK RI PRHIQLAIRNDEELNKLL GVTIA GGVLPNI VLLP
Sbjct: 61 LTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLP 120
Query: 118 KKSETAKGKSNSQE 131
KKS+ +GK +++
Sbjct: 121 KKSKPKQGKKQNKQ 134
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 200 bits (510), Expect = 5e-68
Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 7 GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELA 66
GGK K+K ++RS+RAGLQFPVGRIHR L+KG YAERVGAGAPVYLAAVLEYL AEVLELA
Sbjct: 3 GGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELA 62
Query: 67 GNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKK 119
GNAARDNKK RI PRH+QLA+RNDEELNKLL GVTIA GGVLPNI VLLPKK
Sbjct: 63 GNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional.
Length = 132
Score = 200 bits (509), Expect = 1e-67
Identities = 98/131 (74%), Positives = 110/131 (83%), Gaps = 2/131 (1%)
Query: 1 MSGRGK--GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYL 58
MSGRGK GG K+ +RS++AGLQFPVGRI R L+ G YA RVGAGAPVYLAAVLEYL
Sbjct: 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYL 60
Query: 59 VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPK 118
AEVLELAGNAARDNKK+RI+PRHIQLA+RNDEEL+KLL GVTIA GGVLPNI +VLLPK
Sbjct: 61 AAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPK 120
Query: 119 KSETAKGKSNS 129
KS +KG+
Sbjct: 121 KSGKSKGEPKD 131
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 194 bits (494), Expect = 1e-65
Identities = 93/106 (87%), Positives = 98/106 (92%)
Query: 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKK 75
+RS+RAGLQFPVGRIHRLLRKG YA+RVGAGAPVYLAAVLEYL AEVLELAGNAARDNKK
Sbjct: 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60
Query: 76 TRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSE 121
RI PRH+QLAIRNDEELNKLL GVTIAQGGVLPNI VLLPKK+
Sbjct: 61 RRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHKVLLPKKTG 106
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional.
Length = 139
Score = 179 bits (454), Expect = 3e-59
Identities = 98/135 (72%), Positives = 108/135 (80%), Gaps = 3/135 (2%)
Query: 1 MSGRGKGGKAK-TKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLV 59
+ +G GK K TKS +RSS+AGLQFPVGRI R L+ G YAERVGAGAPVYL+AVLEYL
Sbjct: 5 GTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64
Query: 60 AEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKK 119
AEVLELAGNAARDNKK RI+PRHIQLA+RNDEEL+KLL VTIA GGVLPNI LLPKK
Sbjct: 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKK 124
Query: 120 SETAKGK--SNSQEY 132
KG S SQE+
Sbjct: 125 VGKGKGDIGSASQEF 139
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 168 bits (427), Expect = 3e-55
Identities = 97/131 (74%), Positives = 107/131 (81%), Gaps = 4/131 (3%)
Query: 3 GRGKGGKA--KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVA 60
GKGGKA S++RS++AGL FPVGR+ RLL+KGNY R+GAGAPVYLAAVLEYL A
Sbjct: 3 SGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAA 62
Query: 61 EVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKS 120
E+LELAGNAARDNKK RIIPRH+QLAIRNDEELNKLL VTIAQGGVLPNI LLPK S
Sbjct: 63 EILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSS 122
Query: 121 ETAKGKSNSQE 131
+ KG SQE
Sbjct: 123 K--KGSKRSQE 131
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional.
Length = 129
Score = 167 bits (423), Expect = 1e-54
Identities = 97/129 (75%), Positives = 110/129 (85%)
Query: 1 MSGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVA 60
M+GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAVLEYL A
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTA 60
Query: 61 EVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKS 120
EVLELAGNAARDNKK RI+PRHIQLAIRNDEEL KLL VTIA GGVLPNI AVLLPKK+
Sbjct: 61 EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKT 120
Query: 121 ETAKGKSNS 129
+ KG+ +
Sbjct: 121 KGGKGEETA 129
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional.
Length = 136
Score = 128 bits (322), Expect = 3e-39
Identities = 73/122 (59%), Positives = 88/122 (72%), Gaps = 2/122 (1%)
Query: 1 MSGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLV 59
+ K K K K +RSSRAGLQFPVGRIHR L++ A RVGA A VY AA+LEYL
Sbjct: 15 TAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLT 74
Query: 60 AEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKK 119
AEVLELAGNA++D K RI PRH+QLAIR DEEL+ L+ G TIA GGV+P+I L+ K
Sbjct: 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKS 133
Query: 120 SE 121
++
Sbjct: 134 TK 135
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional.
Length = 134
Score = 106 bits (267), Expect = 7e-31
Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 9 KAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGN 68
KA RS++AGL FPVGR+ LLR+G YA R+GA VY+AAVLEYL AE+LEL+
Sbjct: 10 KASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVK 69
Query: 69 AARDN--KKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETAKGK 126
AA K R+ PR + LA+R+D++L LL VT+++GGV+P++ L K K K
Sbjct: 70 AAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKHKSGKKAK 129
Query: 127 S 127
+
Sbjct: 130 A 130
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 94.2 bits (235), Expect = 1e-26
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17 RSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKK 75
S L+ P R+ R L++G YAE R+ + APV L LE L+ E+LE AG AR K+
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 76 TRIIPRHIQLAIRND 90
I PR IQLA+R D
Sbjct: 61 KTITPRDIQLAVRLD 75
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional.
Length = 58
Score = 74.7 bits (183), Expect = 4e-19
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 1 MSGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYL 58
M+GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAVLEYL
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit
(DRAP1 homolog) [Transcription].
Length = 113
Score = 45.0 bits (106), Expect = 5e-07
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 11 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAA 70
+ K KTR FP+ R+ ++++ +VG PV + LE + E++ L+ A
Sbjct: 17 QKKKKTR-------FPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEA 69
Query: 71 RDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQG 105
R R+ ++ A +DE+ + L N
Sbjct: 70 RKKSSKRMTSEFLKRATESDEKFDFLKNMEQFKNR 104
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor
(CBF/NF-Y) and archaeal histone. This family includes
archaebacterial histones and histone like transcription
factors from eukaryotes.
Length = 65
Score = 35.3 bits (82), Expect = 7e-04
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 25 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQ 84
P+ R+ R+++ A R+ A +A +E + + A + K+ I HI+
Sbjct: 3 LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICKKEKRKTINAEHIK 62
Query: 85 LAI 87
LA+
Sbjct: 63 LAV 65
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and
dynamics].
Length = 91
Score = 35.8 bits (83), Expect = 0.001
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 5 GKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLE 64
G G + + RS+ L P + R+LRK AERV + A L LE + E+ E
Sbjct: 2 GAVGLKEIRRYQRSTDLLL--PKAPVRRILRKAG-AERVSSSAIEELQEALEEYLEEIAE 58
Query: 65 LAGNAARDNKKTRIIPRHIQLAIR 88
A A K+ + I+LA++
Sbjct: 59 DAVELAEHAKRKTVKAEDIKLALK 82
>gnl|CDD|237406 PRK13515, PRK13515, carboxylate-amine ligase; Provisional.
Length = 371
Score = 29.1 bits (66), Expect = 0.57
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 27 VGRIHRLLRKGNYAER---VGAGAPVYLAAVLEYLVAEVLE 64
V +L +G A+R V A L AV+++L+ E LE
Sbjct: 326 VEYARTILEEGTSADRQLRVYAETGGALRAVVDWLIEETLE 366
>gnl|CDD|227533 COG5208, HAP5, CCAAT-binding factor, subunit C [Transcription].
Length = 286
Score = 28.1 bits (62), Expect = 1.3
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPR 81
P+ RI ++++ + + A APV A + E + E+ A A +NK+ R + +
Sbjct: 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKR-RTLQK 165
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 26.8 bits (60), Expect = 3.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 75 KTRIIPRHIQLAIRNDEELNKLLNGVTIAQ-----GGVLPNIQAVLLPKKSETAKG 125
KTR++ R+ QL +R D E +N A+ L + AV+L S+ AKG
Sbjct: 104 KTRVLARNQQL-LRVDFEERDPINAELEARLLAAIREQLASADAVVL---SDYAKG 155
>gnl|CDD|227296 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
trafficking and secretion].
Length = 185
Score = 26.7 bits (59), Expect = 3.9
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 19 SRAGLQFPVGRIHRLLR--KGNYAERVGAGAPVYLAAVL 55
+RA + G + R R +G A AP L V
Sbjct: 1 ARARRRGLRGLLRRFRRDRRGAAAVEFALVAPPLLLLVF 39
>gnl|CDD|236974 PRK11768, PRK11768, serine/threonine protein kinase; Provisional.
Length = 325
Score = 26.3 bits (59), Expect = 6.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 28 GRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAE 61
GRIH++ K + R Y ++L+A
Sbjct: 130 GRIHQVGAKRPFEHRPTLDLQEYGIEPRDWLLAS 163
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 26.1 bits (58), Expect = 6.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 74 KKTRIIPRHIQLAIRNDEE-------LNKLLNGVTIAQGGVLPNIQAVLLPKKSETAKG 125
K R++ R+ QL +R D E NKLL + A L + A++L S+ AKG
Sbjct: 105 VKLRVLSRNQQL-LRLDFEEKFPIEDENKLLEKIKNA----LKSFDALVL---SDYAKG 155
>gnl|CDD|177669 PLN00035, PLN00035, histone H4; Provisional.
Length = 103
Score = 25.2 bits (55), Expect = 8.2
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 1 MSGRGKGG----KAKTKSKTRSSRAGLQ-FPVGRIHRLLRKG 37
MSGRGKGG K K + R +Q I RL R+G
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG 42
>gnl|CDD|152531 pfam12096, DUF3572, Protein of unknown function (DUF3572). This
family of proteins is functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are about 100 amino acids in length.
Length = 89
Score = 24.9 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 42 RVGAGAPVYLAAVLEYLVA 60
R AG P +LA VL++L+
Sbjct: 39 RAAAGDPEFLAGVLDFLLM 57
>gnl|CDD|227885 COG5598, COG5598, Trimethylamine:corrinoid methyltransferase
[Coenzyme metabolism].
Length = 526
Score = 25.8 bits (57), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 44 GAGAPVYLAAVLEYLVAEVL 63
GA +PV LA L AEVL
Sbjct: 280 GAMSPVTLAGALVQQNAEVL 299
>gnl|CDD|192060 pfam08539, HbrB, HbrB-like. HbrB is involved hyphal growth and
polarity.
Length = 158
Score = 25.4 bits (56), Expect = 9.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 107 VLPNIQAVLLPKKSETAK 124
VLP +QAV LP E
Sbjct: 95 VLPYLQAVFLPLDQEFRG 112
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 25.4 bits (56), Expect = 9.3
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 62 VLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQ 104
+L++ + +K + P + + + + L + L Q
Sbjct: 97 ILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRRLKRRGTEQ 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.132 0.359
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,577,373
Number of extensions: 609441
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 53
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)