RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3662
         (132 letters)



>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding
           protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
           1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C
           3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C
           3azj_C 3azk_C 3azl_C 3azm_C ...
          Length = 129

 Score =  167 bits (423), Expect = 6e-55
 Identities = 111/128 (86%), Positives = 121/128 (94%), Gaps = 1/128 (0%)

Query: 1   MSGRGK-GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLV 59
           MSGRGK GGKA+ K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAVLEYL 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 60  AEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKK 119
           AE+LELAGNAARDNKKTRIIPRH+QLAIRNDEELNKLL  VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 120 SETAKGKS 127
           +++ K K+
Sbjct: 121 TDSHKAKA 128


>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant,
           chromatin, X- RAY structure, crystallography, structural
           protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
          Length = 149

 Score =  166 bits (421), Expect = 2e-54
 Identities = 111/131 (84%), Positives = 121/131 (92%), Gaps = 2/131 (1%)

Query: 1   MSGRGK-GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLV 59
           MSGRGK GGKA+ K+KTRSSRAGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAVLEYL 
Sbjct: 20  MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 79

Query: 60  AEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKK 119
           AE+LELAGNAARDNKKTRIIPRH+QLAIRNDEELNKLL  VTIAQGGVLPNIQAVLLPKK
Sbjct: 80  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 139

Query: 120 SETAKGKSNSQ 130
           +E +  K+  +
Sbjct: 140 TE-SHHKAKGK 149


>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA
           complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
          Length = 123

 Score =  162 bits (410), Expect = 5e-53
 Identities = 110/120 (91%), Positives = 117/120 (97%)

Query: 2   SGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAE 61
           SGRGKGGK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAV+EYL AE
Sbjct: 1   SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 60

Query: 62  VLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSE 121
           VLELAGNAARDNKKTRIIPRH+QLAIRNDEELNKLL+GVTIAQGGVLPNIQAVLLPKK+E
Sbjct: 61  VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120


>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone
           variant, chromatin, X- RAY structure, crystallography,
           structural protein/DNA complex; 2.90A {Homo sapiens}
           SCOP: a.22.1.1 PDB: 1u35_C
          Length = 120

 Score =  158 bits (401), Expect = 9e-52
 Identities = 78/122 (63%), Positives = 94/122 (77%), Gaps = 2/122 (1%)

Query: 1   MSGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVA 60
           MS RG  GK K+   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYL A
Sbjct: 1   MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTA 58

Query: 61  EVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKS 120
           E+LELA NAARDNKK R+ PRHI LA+ NDEELN+LL GVTIA GGVLPNI   LL KK 
Sbjct: 59  EILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118

Query: 121 ET 122
            +
Sbjct: 119 GS 120


>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA
           interaction, nucleoprotein, supercoiled DNA; 3.10A
           {Saccharomyces cerevisiae} SCOP: a.22.1.1
          Length = 131

 Score =  150 bits (379), Expect = 3e-48
 Identities = 94/127 (74%), Positives = 107/127 (84%), Gaps = 1/127 (0%)

Query: 2   SGRG-KGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVA 60
            G+G K G A   S++RS++AGL FPVGR+HRLLR+GNYA+R+G+GAPVYL AVLEYL A
Sbjct: 2   GGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAA 61

Query: 61  EVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKS 120
           E+LELAGNAARDNKKTRIIPRH+QLAIRND+ELNKLL  VTIAQGGVLPNI   LLPKKS
Sbjct: 62  EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 121

Query: 121 ETAKGKS 127
             A   S
Sbjct: 122 AKATKAS 128


>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA
           interaction, nucleoprotein, supercoiled DNA, complex
           (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP:
           a.22.1.1
          Length = 128

 Score =  138 bits (348), Expect = 2e-43
 Identities = 75/125 (60%), Positives = 90/125 (72%), Gaps = 5/125 (4%)

Query: 1   MSGRGKG---GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVLE 56
           M+G   G   GKAKTK+ +RS RAGLQFPVGRIHR L+    +   VGA A VY AA+LE
Sbjct: 1   MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60

Query: 57  YLVAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLL 116
           YL AEVLELAGNA++D K  RI PRH+QLAIR DEEL+ L+   TIA GGV+P+I   L+
Sbjct: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLI 119

Query: 117 PKKSE 121
            KK +
Sbjct: 120 GKKGQ 124


>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone
           complex, intrinsically unfolded protein,
           chaperone/structural protein complex; NMR {Saccharomyces
           cerevisiae} SCOP: a.22.1.1 a.22.1.1
          Length = 192

 Score =  104 bits (258), Expect = 3e-29
 Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 11  KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVLEYLVAEVLELAGNA 69
            T++++ S+RAGLQFPVGRI R L++       VG+ A +YL AVLEYL AEVLELAGNA
Sbjct: 92  STQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNA 151

Query: 70  ARDNKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNI 111
           A+D K  RI PRH+QLAIR D+EL+ L+   TIA GGVLP+I
Sbjct: 152 AKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHI 192


>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B,
          tata-DNA, transcription initiation, NC2, negative
          cofactor, structural genomics, PSI; 2.62A {Homo
          sapiens} SCOP: a.22.1.3
          Length = 98

 Score = 86.5 bits (214), Expect = 1e-23
 Identities = 14/77 (18%), Positives = 34/77 (44%)

Query: 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKK 75
          ++  +   +FP  RI ++++      +V A  PV ++  LE  +  +L+ A    +    
Sbjct: 3  SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNA 62

Query: 76 TRIIPRHIQLAIRNDEE 92
            +   H++  I  + +
Sbjct: 63 KTMTTSHLKQCIELEGD 79


>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo
          sapiens} SCOP: a.22.1.3
          Length = 97

 Score = 54.2 bits (130), Expect = 7e-11
 Identities = 16/70 (22%), Positives = 32/70 (45%)

Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHI 83
          + P+ RI ++++     + + A APV  A   +  + E+   A     DNK+  +    I
Sbjct: 19 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78

Query: 84 QLAIRNDEEL 93
           +AI   ++ 
Sbjct: 79 AMAITKFDQF 88


>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
           mutation, guanine-nucleotide releasing factor, signaling
           protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
          Length = 1049

 Score = 54.4 bits (130), Expect = 9e-10
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 10  AKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNA 69
           A++  + R  R  L  PV +IH LL++     ++     VY+ AVLEY+ A++L+L GN 
Sbjct: 90  AQSAIEKRKRRNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNY 148

Query: 70  ARDNKKTRIIPRHIQLAIRNDEEL 93
            R+ +   I  + I++A+  D+ L
Sbjct: 149 VRNIRHYEITKQDIKVAMCADKVL 172


>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
          2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
          2bym_A
          Length = 140

 Score = 41.6 bits (97), Expect = 9e-06
 Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 2/88 (2%)

Query: 8  GKAKTKSKTRSSRAG-LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELA 66
          G+ +++             P+ R+  +++       +       +    E  V  +   A
Sbjct: 2  GEPRSQPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAA 61

Query: 67 GNAARDNKKTRII-PRHIQLAIRNDEEL 93
                 +    +   H+   +  ++ L
Sbjct: 62 YTEEFGQRPGEALKYEHLSQVVNKNKNL 89


>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
          {Pyrococcus horikoshii} SCOP: a.22.1.2
          Length = 70

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 25 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQ 84
           P+  + RL+RK   AERV   A   LA  LE    E+ + A   AR   +  +    I+
Sbjct: 7  LPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 65

Query: 85 LAIRN 89
          LAI++
Sbjct: 66 LAIKS 70


>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A
          {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A
          1a7w_A 1b6w_A 1bfm_A
          Length = 68

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 25 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQ 84
           P+  I R+++    AERV   A + LA VLE +  E+   A   A+   +  I    I+
Sbjct: 3  LPIAPIGRIIKNAG-AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 61

Query: 85 LAIR 88
          LA +
Sbjct: 62 LARK 65


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.1 bits (72), Expect = 0.049
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 31/115 (26%)

Query: 26  PVGRIHRLLRKGNYAERV------GAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRII 79
           P  ++ + L +   A+ V      G+G           +  +V           K    +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTW--------VALDVC-------LSYKVQCKM 180

Query: 80  PRHIQ-LAIRND-------EELNKLLNGVTIAQGGVLPNIQAVLLPKKSETAKGK 126
              I  L ++N        E L KLL    I       +  +  +  +  + + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAE 233


>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
          chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
          y-1140}
          Length = 103

 Score = 28.5 bits (63), Expect = 0.28
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 1  MSGRGKGGKAKTKSKTRSSRAGLQ-----FPVGRIHRLLRKGNYAERVGAGAPVYLAAVL 55
          MSGRGKGGK   K   +  R  L+          I RL R+G   +R+       +  VL
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRNVL 59

Query: 56 EYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88
          +  +  V+  A       K+  +    +  A++
Sbjct: 60 KTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92


>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
          protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
          1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B
          3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B
          3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
          Length = 103

 Score = 28.0 bits (62), Expect = 0.48
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 1  MSGRGKGG----KAKTKSKTRSSRAGLQF-PVGRIHRLLRKGNYAERVGAGAPVYLAAVL 55
          MSGRGKGG    K   K   +  R  +Q      I RL R+G   +R+          VL
Sbjct: 1  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVL 59

Query: 56 EYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88
          +  +  V+  A       K+  +    +  A++
Sbjct: 60 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92


>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
           single chain of CSE4+SCM3+H4, fusion protein; NMR
           {Saccharomyces cerevisiae}
          Length = 235

 Score = 28.4 bits (62), Expect = 0.57
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 20  RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRII 79
           +      V  +       +   R  + A + L    E  +  +LE     A   K+  I+
Sbjct: 14  KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIM 73

Query: 80  PRHIQLA--IRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKKSETAKGK 126
            + +QLA  IR    + +            +  + + ++ K     +  
Sbjct: 74  KKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSNIISKYESIEEQG 122


>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
           proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
           binding; 6.93A {Bacillus subtilis}
          Length = 758

 Score = 27.5 bits (62), Expect = 1.2
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 59  VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE--LNKLLNGVTIAQGGVLPNIQAVLL 116
             +V+EL+ + AR    + +   HI L +  + E    ++LN + ++       +  +L 
Sbjct: 84  AKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143

Query: 117 PKKSETAKGKSNSQE 131
             ++ ++   +NS  
Sbjct: 144 SNETGSSAAGTNSNA 158


>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
          interaction, nucleoprotein, supercoiled DNA; 3.10A
          {Saccharomyces cerevisiae} SCOP: a.22.1.1
          Length = 102

 Score = 25.4 bits (55), Expect = 4.5
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 2  SGRGKGGKAKTKSKTRSSRAGLQ-----FPVGRIHRLLRKGNYAERVGAGAPVYLAAVLE 56
          SGRGKGGK   K   +  R  L+          I RL R+G   +R+       + AVL+
Sbjct: 1  SGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRAVLK 59

Query: 57 YLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88
            +  V+  +       K+  +    +  A++
Sbjct: 60 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91


>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC;
           transcription, proteolysis; 1.50A {Bacillus subtilis}
           PDB: 2y1r_A* 2k77_A
          Length = 150

 Score = 24.9 bits (55), Expect = 6.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 59  VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92
             +V+EL+ + AR    + +   HI L +  + E
Sbjct: 84  AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117


>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
           proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
           binding; 3.65A {Bacillus subtilis}
          Length = 468

 Score = 25.2 bits (56), Expect = 8.4
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 59  VAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEE--LNKLLNGVTIAQGGVLPNIQAVLL 116
             +V+EL+ + AR    + +   HI L +  + E    ++LN + ++       +  +L 
Sbjct: 84  AKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143

Query: 117 PKKSETAKGKSNSQE 131
             ++ ++   +NS  
Sbjct: 144 SNETGSSAAGTNSNA 158


>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
           malonyl/palmitoyl transferase, phosphopantetheine,
           transferase; HET: GVL FMN; 3.10A {Saccharomyces
           cerevisiae} PDB: 2vkz_G* 3hmj_G*
          Length = 2051

 Score = 25.4 bits (55), Expect = 8.5
 Identities = 4/50 (8%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 40  AERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIRN 89
           +     G P  + ++      +V +                + +++++ N
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG----KQVEISLVN 372


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,915,245
Number of extensions: 115167
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 31
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.7 bits)