RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3662
(132 letters)
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 186 bits (473), Expect = 4e-63
Identities = 98/106 (92%), Positives = 103/106 (97%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARD 72
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAVLEYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 73 NKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPK 118
NKKTRIIPRH+QLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPK
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 106
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 183 bits (465), Expect = 6e-62
Identities = 71/105 (67%), Positives = 85/105 (80%)
Query: 15 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNK 74
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 75 KTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLLPKK 119
K R+ PRHI LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 62 KGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 106
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 158 bits (402), Expect = 2e-52
Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 2/104 (1%)
Query: 14 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLVAEVLELAGNAARD 72
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 73 NKKTRIIPRHIQLAIRNDEELNKLLNGVTIAQGGVLPNIQAVLL 116
K RI PRH+QLAIR DEEL+ L+ TIA GGV+P+I L+
Sbjct: 61 LKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI 103
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 146 bits (369), Expect = 2e-46
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 3 GRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEV 62
+ A++ + R R L PV +IH LL++ ++ VY+ AVLEY+ A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 63 LELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLN 98
L+LAGN R+ + I + I++A+ D+ L + +
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMFH 172
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 85.9 bits (213), Expect = 5e-24
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHI 83
+FP RI ++++ +V A PV ++ LE + +L+ A + + H+
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 84 QLAI 87
+ I
Sbjct: 62 KQCI 65
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 82.2 bits (203), Expect = 2e-22
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 26 PVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQL 85
P+ RI ++++ + + A APV A + + E+ A DNK+ + I +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 86 AIRNDEELNKLLNGV 100
AI ++ + L++ V
Sbjct: 62 AITKFDQFDFLIDIV 76
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 65.2 bits (159), Expect = 4e-15
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 14 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDN 73
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 74 KKTRIIPRHIQLAIRN 89
+ + ++ AI
Sbjct: 128 GRKTVQGEDVEKAITY 143
Score = 55.2 bits (133), Expect = 2e-11
Identities = 11/65 (16%), Positives = 24/65 (36%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHI 83
+ P I R+ R+G R+ A + + + V A + + K ++ H+
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 84 QLAIR 88
+
Sbjct: 61 KALAD 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 40.9 bits (96), Expect = 1e-06
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHI 83
+ P+ I R+++ AERV A + LA VLE + E+ A A+ + I I
Sbjct: 3 ELPIAPIGRIIKNAG-AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
Query: 84 QLAIR 88
+LA +
Sbjct: 62 ELARK 66
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 35.5 bits (82), Expect = 1e-04
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHI 83
+ P+ + RL+RK AERV A LA LE E+ + A AR + + I
Sbjct: 2 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 84 QLAIRN 89
+LAI++
Sbjct: 61 KLAIKS 66
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 31.7 bits (72), Expect = 0.006
Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 23 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPR 81
+ P+ + R+++ ++ A + + ++ + A K+ I
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 82 HIQLAIRNDEELN 94
I A+ +
Sbjct: 61 DILFAMSTLGFDS 73
>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase
HisC {Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 26.7 bits (57), Expect = 0.94
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 77 RIIPRHIQLAIRNDEELNKLLN 98
R +++ I EE + +L
Sbjct: 308 RSFREGVRITIGKREENDMILR 329
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.9 bits (55), Expect = 1.9
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 40 AERVGAGAPVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88
A+ GA P+ L ++L + AA+ N + I P ++ + +
Sbjct: 223 ADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 271
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 25.1 bits (54), Expect = 2.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 61 EVLELAGNAARDNKKTRIIPRHIQLAIRNDEE 92
L A + A + I P H+ A+ N E
Sbjct: 9 LALADAQSLALGHDNQFIEPLHLMSALLNQEG 40
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 23.6 bits (51), Expect = 5.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 66 AGNAARDNKKTRIIPRHIQLAIR 88
A A NK++ I R IQ A+R
Sbjct: 45 ASRLAHYNKRSTITSREIQTAVR 67
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 23.1 bits (50), Expect = 6.0
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 53 AVLEYLVAEVLELAGNAARDNKKTRIIP 80
+LE +V+ + A + + R++P
Sbjct: 24 HLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 70
Score = 22.7 bits (49), Expect = 7.6
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 40 AERVGAG-----APVYLAAVLEYLVAEVLELAGNAARDNKKTRIIPRHIQLAIR 88
AE +G G A LA + + +++ A K+ ++ R I ++++
Sbjct: 16 AESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis
[TaxId: 1423]}
Length = 127
Score = 23.4 bits (50), Expect = 9.3
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 12/90 (13%)
Query: 27 VGRIHRLLRKGNYAERVGAGAPVYLAAVL-EYLVAEVLE-LAGNAA-----RDNKKTRII 79
V R+ LL+K + L + + EV + + +
Sbjct: 35 VRRMISLLKKADILTSRAGVPGASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPV 94
Query: 80 PRHIQLAIRN-----DEELNKLLNGVTIAQ 104
+ IQ A+ + L ++
Sbjct: 95 GKKIQNALDETFESVQRAMENELASKSLKD 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.359
Gapped
Lambda K H
0.267 0.0382 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,928
Number of extensions: 18632
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 22
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.2 bits)