BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3664
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 440 LKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSA 499
K +PN +HTGRG+LSMANSGPN+N SQFFIT+RSC +LD KHT+FG++VGG D L+A
Sbjct: 90 FKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTA 149
Query: 500 IEKVE 504
+E VE
Sbjct: 150 MENVE 154
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 449 THTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H G GVLSMAN G ++N S+FFIT++SC HL+ KHT+FG++VGG+D L EK+E
Sbjct: 98 VHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLE 153
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H RGV+SMAN+GPNTN SQFFITY HLD K+TVFGK++ G++TL +EK+
Sbjct: 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H RGV+SMAN+GPNTN SQFFITY HLD K+TVFGK++ G++TL +EK+
Sbjct: 87 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 140
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G GVLSMANSGPNTN SQFFI C+ LDGKH VFG++V G + + +E V
Sbjct: 99 HEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESV 152
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 448 YTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
YTH +LSMAN+GPNTN SQFFIT C LDGKH VFGK++ GM+ + +IEK
Sbjct: 113 YTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKC 168
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 72.0 bits (175), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HTG G+LSMANSGPNTN SQFF+T + LDGKH VFG++ G+D L IE
Sbjct: 92 HTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 143
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 447 NYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
N H G+LSMAN+GPNTN+SQFFIT C LDGKH VFGK++ GM+ + +EK
Sbjct: 95 NMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEK 150
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 447 NYT--HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
N+T H G GVLSMAN+GPNTN SQFFI + LDGKH VFG ++ GMD + IE
Sbjct: 88 NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 144
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 447 NYT--HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
N+T H G GVLSMAN+GPNTN SQFFI + LDGKH VFG ++ GMD + IE
Sbjct: 87 NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 143
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 447 NYT--HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
N+T H G GVLSMAN+GPNTN SQFFI + LDGKH VFG ++ GMD + IE
Sbjct: 86 NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 142
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 447 NYT--HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
N+T H G GVLSMAN+GPNTN SQFFI + LDGKH VFG ++ GMD + IE
Sbjct: 87 NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 143
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HTG G+LSMANSGPNTN SQFF+T + LDGKH VFG++ G+D L IE
Sbjct: 100 HTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 91 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 143
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HTG GVLSMAN+GPNTN SQFF+ LDGKH VFG++V G+D + A+E
Sbjct: 99 HTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE 150
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H+ G+LSMANSGP+TN QFFIT C+ LDGKH VFGK++ G+ + IE V
Sbjct: 104 HSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV 157
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 38/57 (66%)
Query: 448 YTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
Y H G+LSMAN+G NTN SQFFIT HLDGKH VFG+++ GM +E VE
Sbjct: 110 YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE 166
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+L+MAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 144
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
HTG G LSMAN+GPNTN SQFFI + LDGKH VFG+++ G+D + +E++
Sbjct: 106 HTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERL 159
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+++
Sbjct: 91 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMKR 143
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G+LSMAN+GPNTN SQFFIT + LDGKH VFG+++ GM+ + AIE
Sbjct: 90 HNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE 141
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDG H VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAMER 144
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 447 NYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
N H G+LSMAN+GPNTN+SQF IT C LDGKH VFGK++ GM+ + +EK
Sbjct: 95 NMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREMEK 150
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDG H VFGK+ GM+ + A+E+
Sbjct: 92 HTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMER 144
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFG + GM+ + A+E+
Sbjct: 91 HTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAMER 143
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 100 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 152
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 111 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER 163
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
HTG G+LSM+N+GPNTN+SQFFIT HLDGKHT+F ++ M + I V+
Sbjct: 119 HTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQ 173
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 68.6 bits (166), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G+LSMAN+GPNTN SQFFIT C LDGKH VFG++V G D + +E +
Sbjct: 90 HDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESL 143
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HTG G+LS ANSGPNTN SQFF+T + LDGKH VFG++ G+D L IE
Sbjct: 101 HTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 152
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 446 PNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
P+ TG G+L+MAN+GP+TN SQFF+T LDGKHT+FG++ G+ ++ + VE
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE 146
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 36/52 (69%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HTG G+LSMAN G NTN SQF IT + HLD KH VFG + GMDT+ IE
Sbjct: 95 HTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIE 146
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 446 PNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
P+ TG G+L+MAN+GP+TN SQFF+T LDGKHT+FG++ G+ ++ + VE
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE 146
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LSMAN+GPNTN SQFFI LDG H VFGK+ GM+ + A+E+
Sbjct: 96 HTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMER 148
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 36/49 (73%)
Query: 454 GVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
G LSMAN+GPNTN SQFFIT LDG+H VFGK++ GMD + IEK
Sbjct: 103 GALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEK 151
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 446 PNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
P+ TG G+L+MAN+GP+TN SQFF+T LDGKHT+FG++ G+ ++ + VE
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE 146
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 38/55 (69%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H G G LSMAN+G +TN SQFFIT LDG+H VFGK++ GMD + IE+ E
Sbjct: 95 HYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTE 149
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 454 GVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
G LSMAN+GPNTN SQFFIT LDG H VFGK++ GMD + IEK
Sbjct: 103 GALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEK 151
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G G +SMAN+GP+TN SQFFIT LDGKH VFGK++ GM + +IE
Sbjct: 104 HYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 155
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H G+LSMANSGPNTN QFFIT + C LDGK+ VFG+++ D+L ++K+E
Sbjct: 153 HDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN-DSLLLLKKIE 206
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G G +SMAN+GP+TN SQFFIT LDGKH VFGK++ GM + +IE
Sbjct: 96 HYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 147
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 36/53 (67%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HTG G+LS AN+GPNTN SQFFI LDGKH VFGK+ G + + A E+
Sbjct: 91 HTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXER 143
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HT G+LSMAN+G NTN SQFFIT + LDGKH VFG+++ G+D + +E
Sbjct: 91 HTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 454 GVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
G +SMAN+GPN+N SQFF+T LDG+H VFGK+V GMD + +E +
Sbjct: 97 GAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTK 147
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
HT G+LSMAN+G NTN SQFFIT + LDGKH VFG+++ G+D + +E
Sbjct: 92 HTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 143
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 446 PNYTHTGRGVLSMANSG----PNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
P + RG+LSMA+ G PNTN SQFFITY S L+G++ +FGK++ G +TL+ +E
Sbjct: 93 PELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLE 152
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G G +SMAN+G +TN SQFFIT LDGKH VFGK++ GM+ + +E
Sbjct: 101 HYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 152
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G G +SMAN+G +TN SQFFIT LDGKH VFGK++ GM+ + +E
Sbjct: 101 HYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 152
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G G +SMAN+G +TN SQFFIT LDGKH VFGK++ GM+ + +E
Sbjct: 104 HYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H G G +SMAN+G +TN SQFFIT LDGKH VFGK++ GM+ + +E
Sbjct: 94 HYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 145
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
HT G+LSMAN G +TN SQFFIT LD KH VFG++V GMD + I K
Sbjct: 116 HTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAK 168
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKM 490
H +G+LSMAN+GPNTN SQFFIT + LDGKH VFG++
Sbjct: 96 HDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEV 136
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 36/54 (66%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H+ ++SMAN GPNTN SQFFIT C LD KHTVFGK+ G + IEKV
Sbjct: 86 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 139
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 455 VLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
V+SMAN GPNTN SQFFIT HL+ H VFGK+V G + ++ IE
Sbjct: 108 VVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIE 154
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 456 LSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
LSMAN+G NTN SQFFIT LD KHTVFG++ GM+ + I V+
Sbjct: 108 LSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVK 156
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 455 VLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+LSMAN G +TN SQFFIT + HLDG H VFG+++ G + + IE
Sbjct: 111 LLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE 157
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 455 VLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+LSMAN G +TN SQFFIT + HLDG H VFG+++ G + + IE
Sbjct: 111 LLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE 157
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
H +LSMAN G +TN SQFFIT + HLDG H VFG+++ G + + IE
Sbjct: 123 HNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE 174
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 455 VLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
+LSMAN G +TN SQFFIT + HLDG H VFG ++ G + + IE ++
Sbjct: 121 LLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLK 170
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 455 VLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMV 491
+L+MAN+GP TN SQFFIT HL+ +HT+FG+++
Sbjct: 121 LLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVI 157
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 453 RGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG 492
RG+++MAN+G + N SQFF T + L+ KHT+FGK+ G
Sbjct: 108 RGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG 147
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 429 SKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG-PNTNTSQFFITYRSCNHLDGK---- 483
++Q +P KN N RG ++MA + ++ TSQFFI LD
Sbjct: 61 TEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 484 -HTVFGKMVGGMDTLSAIEKV 503
+ VFGK+V GMD I +V
Sbjct: 121 GYAVFGKVVKGMDVADKISQV 141
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 429 SKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG-PNTNTSQFFITYRSCNHLDGK---- 483
++Q +P KN N RG ++MA + ++ TSQFFI LD
Sbjct: 61 TEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 484 -HTVFGKMVGGMDTLSAIEKV 503
+ VFGK+V GMD I +V
Sbjct: 121 GYAVFGKVVKGMDVADKISQV 141
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 444 TKPNYTHTGRGVLSMANSGP--------------NTNTSQFFITYRSCNHLDGKHTVFGK 489
T P RG++ +AN G TN +QFFIT + L+ +T+FGK
Sbjct: 98 THPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGK 157
Query: 490 MVG 492
+ G
Sbjct: 158 VTG 160
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 30/248 (12%)
Query: 197 LKTVTNETRDILDTFKREYKPTEAKVEEKVKADAF----NAAHYSQEEKEQLKDPESRLK 252
L+TV + R++ K E + T + E + AF N ++ E KE PE+ K
Sbjct: 82 LETVCKDIRNLRFAHKPEGR-TRRSIFENLMKYAFPVSNNLPLFAFEYKEVF--PENGWK 138
Query: 253 TVTNETRDILDTFKREYKPTEA----KVEEKVK-ADAFNAAHYSQGEVS-------ASFT 300
D L ++R+ P E+ K+ E+ + D + A + ASF
Sbjct: 139 LY-----DPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFR 193
Query: 301 STAMVPVTENICAVVEEDLVRYSRVVKKEEKEQLKDPESRLKTVTNETRDILDTFKREYK 360
S +PV I + + R S+ + ++ K+ E L+ + + F + +
Sbjct: 194 SRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDAR 253
Query: 361 PTEAKVEEKVKA------DAFNAAHYSQVWLVSSRKLRDRIQKVDSKLSPMKHETFWTHS 414
P+ V K K DA+ A + + + +R+ ++K+ + P ET W +
Sbjct: 254 PSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSN 313
Query: 415 RENTNQLK 422
E+T+ L+
Sbjct: 314 LESTHWLE 321
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 56 KDGNIF--ELEALMGYLKQYKHNPVTGK--PLD--VKSLIKLN-FHKNAKGEYHCPVLYK 108
KDGNI + L + ++ H+P G+ PLD V+ LI + F+ NA H P K
Sbjct: 343 KDGNITVNGKDILFRGVNRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSHYPNHPK 402
Query: 109 VFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFN 168
V+ L F +D+ +++T + EPF R + + P+ +K
Sbjct: 403 VYDLFDKL----------GFWVIDEADLETHGVQ-----EPFNRHTNLEAEYPDTKNKLY 447
Query: 169 LTNFHHLKNN 178
N H+L +N
Sbjct: 448 DVNAHYLSDN 457
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 30/248 (12%)
Query: 197 LKTVTNETRDILDTFKREYKPTEAKVEEKVKADAF----NAAHYSQEEKEQLKDPESRLK 252
L+TV + R++ K E + T + E + AF N ++ E KE PE+ K
Sbjct: 154 LETVCKDIRNLRFAHKPEGR-TRRSIFENLMKYAFPVSNNLPLFAFEYKEVF--PENGWK 210
Query: 253 TVTNETRDILDTFKREYKPTEA----KVEEKVK-ADAFNAAHYSQGEVS-------ASFT 300
D L ++R+ P E+ K+ E+ + D + A + ASF
Sbjct: 211 LY-----DPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFR 265
Query: 301 STAMVPVTENICAVVEEDLVRYSRVVKKEEKEQLKDPESRLKTVTNETRDILDTFKREYK 360
S +PV I + + R S+ + ++ K+ E L+ + + F + +
Sbjct: 266 SRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDAR 325
Query: 361 PTEAKVEEKVKA------DAFNAAHYSQVWLVSSRKLRDRIQKVDSKLSPMKHETFWTHS 414
P+ V K K DA+ A + + + +R+ ++K+ + P ET W +
Sbjct: 326 PSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSN 385
Query: 415 RENTNQLK 422
E+T+ L+
Sbjct: 386 LESTHWLE 393
>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
Length = 729
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 231 FNAAHYSQEEKEQLKD---------PESRLKTVTNETRDILDTFKREYKPTEAKVEEKVK 281
F YS+E K++ PE+ + + N++R +L +R + TE +V+
Sbjct: 534 FEGDGYSEEWKQEAARRGLTNICHVPEALMHYMDNQSRAVL-IGERIFNETELACRLEVE 592
Query: 282 ADAFNAAHYSQGEVSASFTSTAMVPVTENICAVVEEDLVRYSRVVKKEE--------KEQ 333
+ + + V +VP+ + + E+L R + +EE KE
Sbjct: 593 LEKYTMKVQIESRVLGDLAINHIVPIAVSYQNRLLENLCRMKEIFSEEEYEVMSADRKEL 652
Query: 334 LKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD 393
+K+ R+ + RD+ + K A +E K AF + +L S R D
Sbjct: 653 IKEISHRVSAIKVLVRDMTEARKV------ANHKENFKEKAFAYEETVRPYLESIRDHID 706
Query: 394 RIQ-KVDSKLSPM 405
++ ++D ++ P+
Sbjct: 707 HLEMEIDDEIWPL 719
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,896,425
Number of Sequences: 62578
Number of extensions: 618245
Number of successful extensions: 1710
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 150
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)