Query psy3664
Match_columns 504
No_of_seqs 394 out of 1962
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:29:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0883|consensus 100.0 3E-130 6E-135 980.0 24.0 409 1-504 1-412 (518)
2 KOG0881|consensus 100.0 1.2E-44 2.7E-49 314.2 6.8 135 336-504 9-144 (164)
3 KOG0546|consensus 100.0 1E-41 2.2E-46 343.2 11.8 144 335-504 7-159 (372)
4 COG0652 PpiB Peptidyl-prolyl c 100.0 1.1E-40 2.3E-45 307.3 14.0 127 339-503 2-133 (158)
5 KOG0884|consensus 100.0 1.5E-40 3.2E-45 287.3 8.9 132 339-504 3-135 (161)
6 cd01927 cyclophilin_WD40 cyclo 100.0 5E-39 1.1E-43 295.6 14.9 129 344-504 3-132 (148)
7 cd01928 Cyclophilin_PPIL3_like 100.0 6.7E-39 1.5E-43 296.4 15.2 132 339-504 3-135 (153)
8 cd01923 cyclophilin_RING cyclo 100.0 7.3E-39 1.6E-43 297.9 15.5 132 339-504 2-134 (159)
9 KOG0882|consensus 100.0 8.4E-40 1.8E-44 334.5 9.7 132 339-504 407-539 (558)
10 cd01922 cyclophilin_SpCYP2_lik 100.0 8.3E-39 1.8E-43 293.6 14.8 129 344-504 3-132 (146)
11 KOG0880|consensus 100.0 1.7E-38 3.6E-43 295.7 11.9 133 339-504 42-183 (217)
12 KOG0879|consensus 100.0 4E-38 8.6E-43 276.6 9.4 144 335-504 9-158 (177)
13 cd01921 cyclophilin_RRM cyclop 100.0 2.4E-37 5.1E-42 289.7 15.2 136 344-504 3-140 (166)
14 cd01925 cyclophilin_CeCYP16-li 100.0 5.8E-36 1.2E-40 281.6 15.4 132 339-504 8-141 (171)
15 cd01926 cyclophilin_ABH_like c 100.0 1.6E-35 3.4E-40 276.9 15.7 135 337-504 1-148 (164)
16 PLN03149 peptidyl-prolyl isome 100.0 4.5E-35 9.8E-40 278.9 15.7 136 336-504 18-167 (186)
17 PTZ00060 cyclophilin; Provisio 100.0 5.5E-35 1.2E-39 277.8 15.3 136 336-504 15-164 (183)
18 KOG3039|consensus 100.0 1.6E-35 3.5E-40 282.8 11.0 159 1-163 1-282 (303)
19 PRK10903 peptidyl-prolyl cis-t 100.0 1E-34 2.2E-39 277.3 15.3 132 336-504 28-166 (190)
20 PRK10791 peptidyl-prolyl cis-t 100.0 1.2E-34 2.6E-39 270.8 14.5 129 339-504 2-140 (164)
21 PTZ00221 cyclophilin; Provisio 100.0 1.7E-34 3.6E-39 284.3 15.6 144 332-504 48-200 (249)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.6E-34 3.4E-39 267.8 14.0 126 344-504 3-135 (155)
23 cd01924 cyclophilin_TLP40_like 100.0 3.1E-34 6.8E-39 270.9 13.5 147 344-502 3-164 (176)
24 KOG0885|consensus 100.0 3.5E-34 7.5E-39 287.6 10.6 129 339-501 15-145 (439)
25 KOG0111|consensus 100.0 3.6E-34 7.9E-39 270.2 8.6 127 344-503 147-278 (298)
26 PF04641 Rtf2: Rtf2 RING-finge 100.0 9E-34 2E-38 283.4 11.4 146 29-177 24-187 (260)
27 KOG0415|consensus 100.0 2.7E-33 5.9E-38 279.1 11.4 137 339-502 3-141 (479)
28 cd00317 cyclophilin cyclophili 100.0 1.5E-32 3.3E-37 251.1 15.0 128 344-504 3-131 (146)
29 PF00160 Pro_isomerase: Cyclop 100.0 1.1E-30 2.3E-35 241.0 14.5 131 339-504 2-139 (155)
30 KOG0865|consensus 99.9 3.6E-27 7.8E-32 219.2 7.1 134 336-502 3-147 (167)
31 KOG3113|consensus 99.9 2.9E-23 6.3E-28 199.6 7.6 129 27-159 22-166 (293)
32 smart00504 Ubox Modified RING 99.1 2.4E-10 5.2E-15 89.5 5.4 54 40-93 2-55 (63)
33 PF04564 U-box: U-box domain; 98.8 2E-09 4.4E-14 87.5 3.7 53 39-91 4-57 (73)
34 KOG0317|consensus 98.5 5.9E-08 1.3E-12 96.6 3.7 61 32-92 232-292 (293)
35 KOG0826|consensus 98.4 5.1E-08 1.1E-12 98.3 1.0 54 38-91 299-353 (357)
36 KOG0823|consensus 98.4 2.3E-07 5E-12 90.0 3.8 56 37-92 45-103 (230)
37 PLN03208 E3 ubiquitin-protein 98.2 1.2E-06 2.7E-11 83.5 5.4 36 38-73 17-52 (193)
38 PF11789 zf-Nse: Zinc-finger o 98.2 4.7E-07 1E-11 70.2 2.1 42 39-80 11-55 (57)
39 smart00504 Ubox Modified RING 98.2 1.1E-06 2.5E-11 68.5 3.9 53 100-158 1-53 (63)
40 KOG0320|consensus 98.0 3.4E-06 7.4E-11 78.8 3.5 61 33-93 125-187 (187)
41 KOG2164|consensus 98.0 3.4E-06 7.4E-11 90.0 3.8 56 41-96 188-248 (513)
42 KOG0289|consensus 97.9 4.2E-06 9.1E-11 87.4 2.6 53 41-93 2-55 (506)
43 PF13923 zf-C3HC4_2: Zinc fing 97.7 3.8E-05 8.3E-10 54.6 3.9 37 42-78 1-38 (39)
44 KOG0978|consensus 97.7 1E-05 2.2E-10 90.1 -0.0 55 99-158 642-696 (698)
45 KOG0320|consensus 97.6 3.3E-05 7.2E-10 72.3 2.3 57 98-158 129-185 (187)
46 COG5574 PEX10 RING-finger-cont 97.5 4.8E-05 1E-09 75.3 2.5 55 37-91 208-269 (271)
47 PF04564 U-box: U-box domain; 97.4 0.00017 3.7E-09 58.6 3.8 54 99-157 3-56 (73)
48 PF13445 zf-RING_UBOX: RING-ty 97.4 0.00016 3.4E-09 52.9 3.1 41 103-144 1-43 (43)
49 TIGR00599 rad18 DNA repair pro 97.3 0.00017 3.6E-09 76.5 3.4 51 38-88 25-75 (397)
50 PHA02929 N1R/p28-like protein; 97.2 0.00028 6.1E-09 70.0 4.2 47 38-84 173-227 (238)
51 PLN03208 E3 ubiquitin-protein 97.2 0.00036 7.9E-09 66.8 4.3 58 98-159 16-87 (193)
52 TIGR00570 cdk7 CDK-activating 97.1 0.00025 5.5E-09 72.4 2.8 54 100-155 3-58 (309)
53 PF13639 zf-RING_2: Ring finge 97.1 0.0006 1.3E-08 49.6 3.5 40 40-79 1-43 (44)
54 PF15227 zf-C3HC4_4: zinc fing 97.0 0.00075 1.6E-08 49.0 3.5 33 42-74 1-33 (42)
55 PF11789 zf-Nse: Zinc-finger o 96.8 0.001 2.2E-08 51.6 3.2 45 100-147 11-55 (57)
56 PF13920 zf-C3HC4_3: Zinc fing 96.7 0.0024 5.2E-08 47.8 4.4 45 40-84 3-48 (50)
57 PF00097 zf-C3HC4: Zinc finger 96.6 0.0033 7.1E-08 44.8 4.3 37 42-78 1-40 (41)
58 PF13923 zf-C3HC4_2: Zinc fing 96.5 0.0033 7.1E-08 44.6 3.7 39 103-146 1-39 (39)
59 PF14634 zf-RING_5: zinc-RING 96.5 0.0017 3.6E-08 47.5 2.2 44 102-148 1-44 (44)
60 KOG3039|consensus 96.5 0.003 6.6E-08 62.1 4.3 54 39-92 221-278 (303)
61 PF13639 zf-RING_2: Ring finge 96.1 0.0045 9.8E-08 45.0 2.6 42 102-146 2-43 (44)
62 KOG0882|consensus 96.1 0.0066 1.4E-07 64.4 4.5 134 339-503 101-242 (558)
63 KOG0317|consensus 96.0 0.0048 1E-07 62.1 3.3 56 98-159 237-292 (293)
64 PF13445 zf-RING_UBOX: RING-ty 96.0 0.0081 1.8E-07 43.9 3.5 32 42-74 1-36 (43)
65 KOG4642|consensus 96.0 0.0019 4E-08 63.9 0.1 54 37-90 209-263 (284)
66 cd00162 RING RING-finger (Real 95.9 0.009 1.9E-07 42.2 3.5 42 41-82 1-44 (45)
67 KOG0978|consensus 95.9 0.0029 6.3E-08 71.0 1.1 54 40-93 644-698 (698)
68 TIGR00599 rad18 DNA repair pro 95.8 0.0053 1.2E-07 65.2 2.6 52 98-155 24-75 (397)
69 smart00184 RING Ring finger. E 95.6 0.013 2.8E-07 39.8 3.0 37 42-78 1-38 (39)
70 PF13920 zf-C3HC4_3: Zinc fing 95.5 0.015 3.3E-07 43.4 3.5 46 100-151 2-48 (50)
71 KOG2817|consensus 95.5 0.0061 1.3E-07 63.8 1.8 108 40-157 272-391 (394)
72 PF00097 zf-C3HC4: Zinc finger 95.3 0.024 5.2E-07 40.3 3.8 41 103-146 1-41 (41)
73 KOG1813|consensus 95.0 0.014 3.1E-07 58.9 2.4 69 12-83 217-285 (313)
74 KOG2164|consensus 95.0 0.01 2.3E-07 63.9 1.4 69 82-158 172-243 (513)
75 PF04641 Rtf2: Rtf2 RING-finge 94.9 0.033 7.1E-07 56.2 4.8 55 39-94 113-171 (260)
76 PF12678 zf-rbx1: RING-H2 zinc 94.8 0.039 8.4E-07 44.9 4.1 43 38-80 18-73 (73)
77 PF15227 zf-C3HC4_4: zinc fing 94.8 0.039 8.4E-07 40.0 3.6 40 103-146 1-42 (42)
78 COG5432 RAD18 RING-finger-cont 94.6 0.018 3.9E-07 58.0 1.9 44 39-82 25-68 (391)
79 cd00162 RING RING-finger (Real 94.4 0.038 8.2E-07 38.9 2.9 43 103-149 2-44 (45)
80 KOG0826|consensus 94.1 0.016 3.4E-07 59.4 0.4 54 100-158 300-353 (357)
81 COG5109 Uncharacterized conser 94.0 0.027 5.9E-07 57.3 1.9 62 92-158 332-394 (396)
82 KOG2979|consensus 93.7 0.026 5.6E-07 56.2 1.1 35 39-73 176-211 (262)
83 PF14634 zf-RING_5: zinc-RING 93.7 0.05 1.1E-06 39.6 2.3 40 41-80 1-43 (44)
84 COG5574 PEX10 RING-finger-cont 93.6 0.038 8.3E-07 55.1 2.0 58 98-159 213-270 (271)
85 KOG0287|consensus 93.4 0.024 5.2E-07 58.3 0.3 49 40-88 24-72 (442)
86 TIGR03268 methan_mark_3 putati 93.2 0.56 1.2E-05 50.9 10.1 128 332-502 359-495 (503)
87 PHA02929 N1R/p28-like protein; 93.1 0.066 1.4E-06 53.3 2.7 50 100-151 174-227 (238)
88 PHA02926 zinc finger-like prot 92.5 0.09 2E-06 51.5 2.8 35 39-73 170-213 (242)
89 KOG0823|consensus 92.3 0.19 4.2E-06 49.3 4.7 59 96-158 43-102 (230)
90 COG5152 Uncharacterized conser 92.2 0.065 1.4E-06 51.3 1.4 45 37-82 195-239 (259)
91 KOG2879|consensus 91.7 0.12 2.6E-06 51.9 2.6 50 99-151 238-287 (298)
92 PF14835 zf-RING_6: zf-RING of 91.4 0.053 1.2E-06 43.0 -0.2 47 41-89 9-56 (65)
93 TIGR00570 cdk7 CDK-activating 91.3 0.18 3.8E-06 52.0 3.4 52 40-91 4-61 (309)
94 PRK00969 hypothetical protein; 91.2 0.47 1E-05 51.6 6.6 45 452-499 259-303 (508)
95 smart00184 RING Ring finger. E 90.8 0.15 3.3E-06 34.3 1.7 39 103-146 1-39 (39)
96 KOG2177|consensus 90.7 0.071 1.5E-06 52.3 -0.1 34 38-71 12-45 (386)
97 PF12903 DUF3830: Protein of u 90.4 0.76 1.6E-05 42.5 6.3 27 344-370 4-30 (147)
98 PF14447 Prok-RING_4: Prokaryo 90.3 0.13 2.8E-06 39.6 1.0 34 118-155 21-54 (55)
99 PRK00969 hypothetical protein; 89.9 2.1 4.5E-05 46.8 10.1 51 452-502 115-167 (508)
100 KOG3800|consensus 89.3 0.25 5.4E-06 50.1 2.5 53 102-156 2-56 (300)
101 PF12861 zf-Apc11: Anaphase-pr 89.3 0.36 7.9E-06 40.5 3.1 54 33-86 25-84 (85)
102 KOG1002|consensus 88.9 0.15 3.3E-06 55.2 0.7 50 41-112 538-587 (791)
103 PF02891 zf-MIZ: MIZ/SP-RING z 88.9 0.38 8.3E-06 36.3 2.6 46 101-149 3-50 (50)
104 KOG0289|consensus 88.7 0.25 5.5E-06 52.5 2.1 58 101-163 1-58 (506)
105 PHA02926 zinc finger-like prot 88.2 0.26 5.7E-06 48.3 1.8 53 99-151 169-230 (242)
106 TIGR03268 methan_mark_3 putati 87.3 4.3 9.4E-05 44.3 10.4 52 451-502 110-164 (503)
107 KOG2879|consensus 86.4 0.69 1.5E-05 46.7 3.6 45 40-84 240-287 (298)
108 COG5222 Uncharacterized conser 85.7 0.41 8.9E-06 48.6 1.6 34 40-73 275-309 (427)
109 KOG0297|consensus 85.3 0.42 9.1E-06 51.1 1.5 51 40-90 22-73 (391)
110 PF14835 zf-RING_6: zf-RING of 85.2 0.24 5.1E-06 39.4 -0.3 49 101-156 8-56 (65)
111 KOG2177|consensus 84.5 0.39 8.4E-06 47.1 0.8 45 98-148 11-55 (386)
112 COG4070 Predicted peptidyl-pro 81.8 4.6 0.0001 42.8 7.3 23 349-371 377-399 (512)
113 KOG0827|consensus 81.6 1.4 3.1E-05 46.4 3.6 76 100-186 4-80 (465)
114 KOG4628|consensus 81.4 0.94 2E-05 47.5 2.2 42 40-81 230-275 (348)
115 KOG4159|consensus 81.2 0.86 1.9E-05 48.7 1.9 45 38-83 84-128 (398)
116 KOG0802|consensus 80.1 0.92 2E-05 50.6 1.8 50 38-87 290-344 (543)
117 KOG1645|consensus 78.6 1.3 2.8E-05 47.0 2.2 58 101-159 5-64 (463)
118 PF10367 Vps39_2: Vacuolar sor 78.5 0.81 1.8E-05 39.0 0.6 30 101-132 79-108 (109)
119 COG4070 Predicted peptidyl-pro 77.9 3.2 6.9E-05 44.0 4.7 46 452-500 258-303 (512)
120 COG5243 HRD1 HRD ubiquitin lig 77.1 2.4 5.1E-05 44.6 3.5 44 40-83 288-344 (491)
121 COG5540 RING-finger-containing 76.6 2.3 5E-05 43.6 3.2 47 38-84 321-372 (374)
122 KOG0396|consensus 76.0 0.77 1.7E-05 48.1 -0.3 79 75-156 306-384 (389)
123 COG5627 MMS21 DNA repair prote 75.8 1.3 2.8E-05 43.8 1.2 40 39-78 189-231 (275)
124 KOG2660|consensus 75.3 0.79 1.7E-05 47.3 -0.4 43 38-80 14-57 (331)
125 KOG0824|consensus 75.0 1.5 3.2E-05 44.9 1.3 106 39-154 7-119 (324)
126 COG5194 APC11 Component of SCF 73.7 2 4.4E-05 35.5 1.6 47 38-84 19-81 (88)
127 KOG0287|consensus 72.9 1.4 3.1E-05 45.7 0.7 50 100-155 23-72 (442)
128 PF14446 Prok-RING_1: Prokaryo 72.6 2.6 5.6E-05 32.4 1.8 46 101-152 6-53 (54)
129 PF12678 zf-rbx1: RING-H2 zinc 71.9 4.9 0.00011 32.5 3.5 42 103-146 22-72 (73)
130 cd00350 rubredoxin_like Rubred 70.0 3.3 7.1E-05 28.3 1.8 11 139-149 16-26 (33)
131 COG5540 RING-finger-containing 69.7 4.3 9.3E-05 41.7 3.3 50 99-150 322-371 (374)
132 COG5152 Uncharacterized conser 69.2 2.1 4.6E-05 41.3 0.9 45 100-150 196-240 (259)
133 PF02891 zf-MIZ: MIZ/SP-RING z 69.2 8 0.00017 29.1 3.9 41 41-81 4-49 (50)
134 PF06416 DUF1076: Protein of u 68.9 6.6 0.00014 34.6 3.8 50 41-90 42-97 (113)
135 KOG4739|consensus 67.2 2.1 4.5E-05 42.5 0.4 43 101-149 4-46 (233)
136 KOG0883|consensus 66.8 3.7 8E-05 43.5 2.2 76 17-92 69-160 (518)
137 COG5222 Uncharacterized conser 65.7 2.9 6.4E-05 42.7 1.2 48 101-156 275-322 (427)
138 KOG0396|consensus 63.9 3.4 7.4E-05 43.4 1.3 56 36-91 320-386 (389)
139 KOG2979|consensus 63.5 3.5 7.5E-05 41.4 1.2 53 101-160 177-229 (262)
140 KOG2462|consensus 62.6 6.5 0.00014 39.9 2.9 56 98-153 128-200 (279)
141 PHA02768 hypothetical protein; 62.4 9.2 0.0002 29.6 3.1 46 100-159 5-51 (55)
142 PRK06266 transcription initiat 61.8 6.4 0.00014 37.5 2.7 35 98-153 115-149 (178)
143 COG5113 UFD2 Ubiquitin fusion 61.5 6.9 0.00015 43.9 3.1 50 41-90 856-906 (929)
144 KOG0824|consensus 61.4 4.1 8.9E-05 41.8 1.3 47 101-152 8-54 (324)
145 TIGR00373 conserved hypothetic 59.9 5.9 0.00013 37.0 2.0 36 98-154 107-142 (158)
146 PF10915 DUF2709: Protein of u 59.9 3.6 7.9E-05 39.5 0.6 17 100-116 87-103 (238)
147 KOG0825|consensus 59.0 2.3 5E-05 48.5 -1.0 51 101-154 124-174 (1134)
148 KOG1703|consensus 58.8 7.5 0.00016 42.7 2.9 96 42-150 333-432 (479)
149 KOG3113|consensus 58.5 11 0.00024 37.8 3.7 54 40-95 112-169 (293)
150 KOG2462|consensus 56.2 11 0.00023 38.4 3.2 87 55-153 165-256 (279)
151 KOG1002|consensus 56.0 5.3 0.00011 43.8 1.1 66 98-172 534-602 (791)
152 smart00531 TFIIE Transcription 53.8 9.4 0.0002 35.1 2.3 41 98-154 97-137 (147)
153 COG5432 RAD18 RING-finger-cont 53.3 9.1 0.0002 39.1 2.2 47 100-152 25-71 (391)
154 PF11793 FANCL_C: FANCL C-term 53.2 4.1 8.8E-05 32.8 -0.2 33 41-73 4-44 (70)
155 KOG2042|consensus 52.4 12 0.00025 44.2 3.2 49 42-90 873-922 (943)
156 PF00301 Rubredoxin: Rubredoxi 52.2 4.7 0.0001 30.1 0.0 43 100-149 1-43 (47)
157 KOG1814|consensus 50.2 9.7 0.00021 40.7 1.9 51 83-134 159-217 (445)
158 COG5175 MOT2 Transcriptional r 49.6 9.2 0.0002 39.8 1.6 48 39-88 14-68 (480)
159 KOG1001|consensus 49.2 3.5 7.6E-05 47.2 -1.6 56 40-96 455-512 (674)
160 KOG0311|consensus 48.5 2 4.3E-05 44.9 -3.3 44 41-84 45-90 (381)
161 COG5189 SFP1 Putative transcri 47.9 3.8 8.2E-05 42.3 -1.4 54 99-152 348-410 (423)
162 cd00730 rubredoxin Rubredoxin; 47.9 8.7 0.00019 29.1 0.8 12 138-149 32-43 (50)
163 KOG2593|consensus 47.5 9.2 0.0002 41.1 1.3 41 99-154 127-167 (436)
164 COG1645 Uncharacterized Zn-fin 46.1 13 0.00027 33.9 1.7 36 64-110 14-54 (131)
165 PF10367 Vps39_2: Vacuolar sor 44.6 15 0.00034 30.9 2.0 29 38-66 77-107 (109)
166 KOG0825|consensus 44.5 5.9 0.00013 45.4 -0.7 40 42-81 126-168 (1134)
167 KOG2932|consensus 43.6 5.5 0.00012 41.0 -1.0 49 103-158 93-141 (389)
168 KOG3579|consensus 43.5 13 0.00029 37.8 1.6 35 40-74 269-307 (352)
169 KOG0828|consensus 42.9 11 0.00023 41.3 0.9 47 38-84 570-634 (636)
170 COG1592 Rubrerythrin [Energy p 42.1 15 0.00032 34.8 1.6 10 140-149 149-158 (166)
171 KOG4692|consensus 40.1 18 0.00038 38.1 1.9 43 39-81 422-464 (489)
172 KOG1645|consensus 39.5 11 0.00023 40.4 0.2 32 40-71 5-41 (463)
173 COG5175 MOT2 Transcriptional r 38.5 14 0.0003 38.5 0.9 57 99-157 14-70 (480)
174 PF14353 CpXC: CpXC protein 38.4 32 0.00069 30.6 3.1 58 101-163 2-61 (128)
175 PF14353 CpXC: CpXC protein 38.2 23 0.0005 31.5 2.2 51 75-125 3-63 (128)
176 KOG2169|consensus 37.9 22 0.00047 40.6 2.4 104 52-161 251-366 (636)
177 KOG1940|consensus 37.8 13 0.00029 37.9 0.7 49 98-148 156-204 (276)
178 KOG1493|consensus 37.5 7.3 0.00016 32.1 -1.0 51 33-83 24-80 (84)
179 KOG4628|consensus 37.4 29 0.00063 36.6 3.0 62 85-148 212-275 (348)
180 PRK05452 anaerobic nitric oxid 36.0 37 0.00079 37.4 3.7 45 98-149 423-467 (479)
181 PRK00420 hypothetical protein; 35.5 28 0.0006 30.9 2.2 28 74-111 24-51 (112)
182 PF00096 zf-C2H2: Zinc finger, 35.4 22 0.00048 21.5 1.2 13 101-113 1-13 (23)
183 smart00744 RINGv The RING-vari 34.7 45 0.00097 24.9 2.9 39 41-79 1-48 (49)
184 PF09986 DUF2225: Uncharacteri 34.4 17 0.00036 35.7 0.7 56 100-159 5-67 (214)
185 PF13894 zf-C2H2_4: C2H2-type 33.1 22 0.00049 21.1 0.9 12 101-112 1-12 (24)
186 KOG1734|consensus 32.2 14 0.0003 37.5 -0.2 51 100-150 224-280 (328)
187 PF14446 Prok-RING_1: Prokaryo 32.1 27 0.00059 26.9 1.4 19 140-158 5-24 (54)
188 COG5533 UBP5 Ubiquitin C-termi 31.9 54 0.0012 34.2 3.9 75 100-174 235-318 (415)
189 KOG1813|consensus 31.2 21 0.00045 36.7 0.8 43 101-149 242-284 (313)
190 KOG0804|consensus 30.2 26 0.00056 38.0 1.3 70 42-127 178-251 (493)
191 PF05605 zf-Di19: Drought indu 30.1 8.3 0.00018 29.2 -1.8 9 100-108 31-39 (54)
192 PRK11088 rrmA 23S rRNA methylt 29.8 26 0.00056 35.2 1.2 25 40-64 3-30 (272)
193 PF04423 Rad50_zn_hook: Rad50 28.9 30 0.00065 26.1 1.2 23 129-153 11-33 (54)
194 PF06750 DiS_P_DiS: Bacterial 28.8 61 0.0013 27.5 3.1 41 37-86 31-71 (92)
195 KOG0311|consensus 28.6 9 0.0002 40.2 -2.3 50 98-151 41-90 (381)
196 KOG0802|consensus 28.5 33 0.00072 38.3 1.9 63 100-164 291-354 (543)
197 KOG2272|consensus 26.4 33 0.00071 34.6 1.2 110 42-157 166-297 (332)
198 KOG0801|consensus 25.9 37 0.0008 32.0 1.4 70 81-157 121-194 (205)
199 PF12861 zf-Apc11: Anaphase-pr 25.9 61 0.0013 27.3 2.5 50 102-152 23-83 (85)
200 smart00531 TFIIE Transcription 25.0 23 0.00049 32.6 -0.2 34 75-111 101-134 (147)
201 PF10537 WAC_Acf1_DNA_bd: ATP- 24.9 56 0.0012 28.4 2.3 35 100-148 3-38 (102)
202 COG5220 TFB3 Cdk activating ki 24.9 23 0.00049 35.4 -0.2 50 101-151 11-64 (314)
203 KOG1701|consensus 23.4 30 0.00065 37.3 0.3 103 38-152 301-406 (468)
204 COG1645 Uncharacterized Zn-fin 23.3 32 0.00068 31.3 0.4 20 39-62 28-47 (131)
205 PRK12495 hypothetical protein; 23.2 65 0.0014 31.9 2.5 11 61-71 4-14 (226)
206 PF12874 zf-met: Zinc-finger o 22.1 53 0.0011 20.2 1.2 13 101-113 1-13 (25)
207 KOG3002|consensus 22.0 78 0.0017 32.8 3.0 46 36-84 45-91 (299)
208 PF13465 zf-H2C2_2: Zinc-finge 21.7 68 0.0015 20.5 1.6 14 98-111 12-25 (26)
209 PF12171 zf-C2H2_jaz: Zinc-fin 21.1 40 0.00088 21.5 0.5 12 101-112 2-13 (27)
210 KOG4577|consensus 21.0 57 0.0012 33.5 1.7 91 42-137 63-156 (383)
211 KOG3161|consensus 20.2 29 0.00062 39.3 -0.6 56 101-165 12-67 (861)
No 1
>KOG0883|consensus
Probab=100.00 E-value=2.6e-130 Score=980.02 Aligned_cols=409 Identities=53% Similarity=0.869 Sum_probs=395.1
Q ss_pred CCCCcCcCCceeEeHHhhhhhcCCCCCCCC-CCCccccCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCC
Q psy3664 1 MGKRQHQSDKLYLTYTEWTTLYGGKKAGPE-KSDFKRLPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVT 79 (504)
Q Consensus 1 Mgk~~~~~d~~~iT~~E~~~~~G~~k~~~~-~~~~~~lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvt 79 (504)
|||+|||||+||||++||+..|||++...+ +..|+||||+||+|++.||++|||+.+|.||+...|++||+++|++|+|
T Consensus 1 MGKkQHqKDkmylT~tEw~~~~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~t 80 (518)
T KOG0883|consen 1 MGKKQHQKDKMYLTTTEWKSIYGGKKDTGENRTQFKRLPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPIT 80 (518)
T ss_pred CCcccccccceEEeehhhhhhcCCCCCCcccccccccCChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCC
Confidence 999999999999999999999999997644 8899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCceeEeeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEec
Q psy3664 80 GKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 80 g~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
|++++.+|||+|+|++|++|+|+|||++|+|++++|||||+++||||||+||++|||+.++|+||++++||+|.|||+||
T Consensus 81 G~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ 160 (518)
T KOG0883|consen 81 GQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ 160 (518)
T ss_pred CCccccccceeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhccccccccccccccccHHHHhhccCCc-ccccccchhHHHHHHHhhhccCchhhhHHHHHhhhhhhhcccch
Q psy3664 160 DPNELSKFNLTNFHHLKNNLRVLTDEEKEQLKDPE-SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQ 238 (504)
Q Consensus 160 dp~~~~~~~~~~f~h~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 238 (504)
||++++++++++|+|||+++++.+++++.++.+|. .+++++|.+++..|+||.+++++++..+
T Consensus 161 dP~~lek~~~~~F~hvk~~lk~~~eeek~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p~~~~a---------------- 224 (518)
T KOG0883|consen 161 DPNNLEKFNMSDFYHVKKNLKTADEEEKKAKKDPALGYIKAMNLETKSTLPELSKEYQPKKSIA---------------- 224 (518)
T ss_pred CcchhhccchhhHHHHhcccccCcHHHHHhhcCchhhhhhhcchhhhhhhHHHhhhhccchhhh----------------
Confidence 99999999999999999999999999999999999 7899999999999999999887776322
Q ss_pred HHHhhccCccccccccccccccccccccccCCcchhhHHhhhhcccccccccCCCccccceecccCCCCcccccccccch
Q psy3664 239 EEKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQGEVSASFTSTAMVPVTENICAVVEED 318 (504)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~s~tst~~~~~~~~~~~~~~~~ 318 (504)
+....++|++|+||||+|.+|+|||||++.|+|.++++++.++
T Consensus 225 -------------------------------------~t~~~~aD~~naahyStG~vaasfTSTam~PvT~neaaiid~d 267 (518)
T KOG0883|consen 225 -------------------------------------STMKRSADKINAAHYSTGAVAASFTSTAMTPVTKNEAAIIDED 267 (518)
T ss_pred -------------------------------------hhccccchhhhhhhccccceeceeccceeeecccchhhhccch
Confidence 0112346789999999999999999999999999999999999
Q ss_pred hhhhhhcchhhhhhhcCCCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccc
Q psy3664 319 LVRYSRVVKKEEKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQK 397 (504)
Q Consensus 319 ~~~~~~~k~k~~~~~~~~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQg 397 (504)
.++|.|+|++|| |+| .|+.|+|+||||||.+|++|+||+.||++|||+|+. |||.|++ ||||
T Consensus 268 ~~ry~rvKkkgy--------vrl--~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~-------FHRsIrnFmiQG 330 (518)
T KOG0883|consen 268 DVRYTRVKKKGY--------VRL--VTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTI-------FHRSIRNFMIQG 330 (518)
T ss_pred hhhhccccccce--------EEE--eccCCceeeEeecCcchHHHHHHHHHHhcccccchH-------HHHHHHHHeeeC
Confidence 999999999999 999 999999999999999999999999999999999999 9999999 9999
Q ss_pred cCCCCCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCC
Q psy3664 398 VDSKLSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSC 477 (504)
Q Consensus 398 GDp~~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~ 477 (504)
|||+|+|.||+||||++ |+||+.++|.|+.||+|||||+|||+|||||||++++|
T Consensus 331 GDPTGTG~GGeSiWgKp-------------------------FkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsc 385 (518)
T KOG0883|consen 331 GDPTGTGRGGESIWGKP-------------------------FKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSC 385 (518)
T ss_pred CCCCCCCCCCccccCCc-------------------------cccccCCCCCcCCcceEeeccCCCCCCCceEEEEecch
Confidence 99999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 478 NHLDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 478 ~~LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
.|||++|||||+||+|+|+|.+||+||
T Consensus 386 khLd~KHTIFGrvVGGldtL~amEnve 412 (518)
T KOG0883|consen 386 KHLDNKHTIFGRVVGGLDTLTAMENVE 412 (518)
T ss_pred hhccccceeeeeeeccHHHHHHHhcCC
Confidence 999999999999999999999999986
No 2
>KOG0881|consensus
Probab=100.00 E-value=1.2e-44 Score=314.22 Aligned_cols=135 Identities=33% Similarity=0.506 Sum_probs=130.9
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCc
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHS 414 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~ 414 (504)
-|.|.| +|+.|.|++|||-+.||+||.||.+|+++|||||+. ||||+++ |||||||+|+|+||.||||..
T Consensus 9 ~~~V~L--eTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~-------FHRii~DFmiQGGDPTGTGRGGaSIYG~k 79 (164)
T KOG0881|consen 9 PPNVTL--ETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVI-------FHRIIKDFMIQGGDPTGTGRGGASIYGDK 79 (164)
T ss_pred CCeEEE--eecccceehhhhhhcCcHHHHHHHHHHhccccccee-------eeehhhhheeecCCCCCCCCCccccccch
Confidence 355999 999999999999999999999999999999999999 9999999 999999999999999999999
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccH
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGM 494 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~Gm 494 (504)
|+||..+.|+|.+.|+|||||.|||+|||||||||++.+||||+||+||||..||
T Consensus 80 -------------------------F~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm 134 (164)
T KOG0881|consen 80 -------------------------FEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGM 134 (164)
T ss_pred -------------------------hhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q psy3664 495 DTLSAIEKVE 504 (504)
Q Consensus 495 dvL~kI~~~~ 504 (504)
+|+.+|..++
T Consensus 135 ~vikr~G~v~ 144 (164)
T KOG0881|consen 135 EVIKRMGMVE 144 (164)
T ss_pred HHHHhhccee
Confidence 9999998763
No 3
>KOG0546|consensus
Probab=100.00 E-value=1e-41 Score=343.19 Aligned_cols=144 Identities=27% Similarity=0.349 Sum_probs=135.2
Q ss_pred CCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhhc--c--CCCCccccccceeEEEeeCC-cccccCCC-CCCC
Q psy3664 335 KDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVKA--D--AFNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPM 405 (504)
Q Consensus 335 ~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g--~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~ 405 (504)
.+|.|.|++ .-..|+|+|+||.|.||+||+||..||.+ | -=+|..++|+++.|||||++ ||||||++ |+|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 478899988 46789999999999999999999999986 3 36788889999999999999 99999998 8999
Q ss_pred CCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCc
Q psy3664 406 KHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHT 485 (504)
Q Consensus 406 gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~t 485 (504)
||+||||.. |+||+ +.|+|+++++|||||.||||||||||||..++|||||+|+
T Consensus 87 GGeSIYG~~-------------------------FdDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHV 140 (372)
T KOG0546|consen 87 GGESIYGEK-------------------------FDDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHV 140 (372)
T ss_pred Ccccccccc-------------------------ccccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCcee
Confidence 999999998 99998 8999999999999999999999999999999999999999
Q ss_pred EEEEEEccHHHHHHHhhCC
Q psy3664 486 VFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 486 vFG~Vv~GmdvL~kI~~~~ 504 (504)
|||+||.|++||..||.++
T Consensus 141 VFGqVI~G~~VVr~IEn~~ 159 (372)
T KOG0546|consen 141 VFGQVIKGKEVVREIENLE 159 (372)
T ss_pred EEeeEeechhHHHHHhccc
Confidence 9999999999999999864
No 4
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=307.26 Aligned_cols=127 Identities=32% Similarity=0.383 Sum_probs=117.3
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCC-CCCCcccccCccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLS-PMKHETFWTHSRE 416 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~-g~gg~s~~g~~~~ 416 (504)
|.+ +|+.|+|+|+||++.||+||+||++||+.|||+|+. |||||++ |||||||+++ |.+|++ .+
T Consensus 2 v~~--~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~-------FHRVi~~FmiQgGd~~~~~g~gg~~---~~-- 67 (158)
T COG0652 2 VIL--ETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTI-------FHRVIPGFMIQGGDPTGGDGTGGPG---PP-- 67 (158)
T ss_pred cee--eccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCce-------EEEeecCceeecCCCCCCCCCCCCC---CC--
Confidence 566 999999999999999999999999999999999999 9999999 9999999987 888877 23
Q ss_pred cccccchhhhccccccCCCCCccccCCCCCCCCCCC--CcEEEEecCC-CCCCCccEEEEcCCCCCCCCCCcEEEEEEcc
Q psy3664 417 NTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTG--RGVLSMANSG-PNTNTSQFFITYRSCNHLDGKHTVFGKMVGG 493 (504)
Q Consensus 417 ~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~--rG~lsmansg-pns~~SQFfItl~~~~~LD~k~tvFG~Vv~G 493 (504)
|++|+ ....|.+ ||+|||||+| ||||+|||||++.+.+|||++|+|||+|++|
T Consensus 68 -----------------------f~~E~-~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~G 123 (158)
T COG0652 68 -----------------------FKDEN-FALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEG 123 (158)
T ss_pred -----------------------Ccccc-cccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehh
Confidence 99997 3444445 9999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q psy3664 494 MDTLSAIEKV 503 (504)
Q Consensus 494 mdvL~kI~~~ 503 (504)
||||++|+++
T Consensus 124 mdvvdkI~~~ 133 (158)
T COG0652 124 MDVVDKIKNG 133 (158)
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 5
>KOG0884|consensus
Probab=100.00 E-value=1.5e-40 Score=287.31 Aligned_cols=132 Identities=33% Similarity=0.485 Sum_probs=129.5
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|..|+|.||+|++.+|+||+||+.||...||++++ |||-+++ |+|+|||+.+|.||.||||++
T Consensus 3 vtl--ht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~-------~~~~~~~f~v~~~~~~~tgrgg~siwg~~--- 70 (161)
T KOG0884|consen 3 VTL--HTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCI-------FHRNIKGFMVQTGDPTHTGRGGNSIWGKK--- 70 (161)
T ss_pred EEE--eeccCcEEEEEEecCChhHHHHHHHHhhhhhcccee-------ecCCCCCcEEEeCCCCCCCCCCccccCCc---
Confidence 677 999999999999999999999999999999999999 9999999 999999999999999999999
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTL 497 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL 497 (504)
|+||+...|+|+.||+|||||.|||+|+||||||++..+|||-+|||||+||+|+|+|
T Consensus 71 ----------------------fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etl 128 (161)
T KOG0884|consen 71 ----------------------FEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128 (161)
T ss_pred ----------------------chHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhH
Confidence 9999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q psy3664 498 SAIEKVE 504 (504)
Q Consensus 498 ~kI~~~~ 504 (504)
+.|+.+|
T Consensus 129 dele~l~ 135 (161)
T KOG0884|consen 129 DELEKLP 135 (161)
T ss_pred HHHhhcc
Confidence 9999886
No 6
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=5e-39 Score=295.65 Aligned_cols=129 Identities=34% Similarity=0.475 Sum_probs=124.8
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCccccccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSRENTNQLK 422 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~~~~~~ 422 (504)
+|+.|+|+||||++.||+||+||+.||+.|||+++. |||++++ +|||||+.++|.+++++|+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~-------f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~-------- 67 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTI-------FHRVIKGFMIQTGDPTGDGTGGESIWGKE-------- 67 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcE-------EEEEcCCcEEEecccCCCCCCCCcccCCc--------
Confidence 899999999999999999999999999999999999 9999999 999999999999999999877
Q ss_pred hhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHHHHHhh
Q psy3664 423 PKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 423 p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL~kI~~ 502 (504)
|++|..+.+.|.++|+||||++++++++|||||+++++|+||++|+|||+|++|||||++|++
T Consensus 68 -----------------~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~ 130 (148)
T cd01927 68 -----------------FEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIEN 130 (148)
T ss_pred -----------------cccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHc
Confidence 999987789999899999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy3664 503 VE 504 (504)
Q Consensus 503 ~~ 504 (504)
++
T Consensus 131 ~~ 132 (148)
T cd01927 131 VK 132 (148)
T ss_pred CC
Confidence 64
No 7
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.7e-39 Score=296.36 Aligned_cols=132 Identities=34% Similarity=0.519 Sum_probs=126.6
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+||||++.||+||+||+.||+.|||+|+. |||++++ |||||||.++|.++.++|+.+
T Consensus 3 v~l--~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~-------f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~--- 70 (153)
T cd01928 3 VTL--HTNLGDIKIELFCDDCPKACENFLALCASGYYNGCI-------FHRNIKGFMVQTGDPTGTGKGGESIWGKK--- 70 (153)
T ss_pred EEE--EEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcE-------EEEeCCCCEEEccccCCCCCCCCccCCCc---
Confidence 667 999999999999999999999999999999999999 9999999 999999999999999999877
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTL 497 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL 497 (504)
|+||+.+.+.|+++|+|+||++++++++|||||+++++++||++|+|||+|++|||||
T Consensus 71 ----------------------~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl 128 (153)
T cd01928 71 ----------------------FEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETL 128 (153)
T ss_pred ----------------------cccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHH
Confidence 9999877889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q psy3664 498 SAIEKVE 504 (504)
Q Consensus 498 ~kI~~~~ 504 (504)
++|++++
T Consensus 129 ~~I~~~~ 135 (153)
T cd01928 129 DTLEKLP 135 (153)
T ss_pred HHHHcCC
Confidence 9999864
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=7.3e-39 Score=297.93 Aligned_cols=132 Identities=46% Similarity=0.690 Sum_probs=127.4
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. |||++++ +|||||+.++|.++.++|+.+
T Consensus 2 v~~--~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~-------f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~--- 69 (159)
T cd01923 2 VRL--HTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTI-------FHRSIRNFMIQGGDPTGTGRGGESIWGKP--- 69 (159)
T ss_pred EEE--EEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcE-------EEEEeCCcEEEecccCCCCCCCccccCCc---
Confidence 777 999999999999999999999999999999999999 9999999 999999999999999999888
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTL 497 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL 497 (504)
|++|..+.+.|+.+|+||||++++++++||||||++++++||++|+|||+|++|||||
T Consensus 70 ----------------------~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl 127 (159)
T cd01923 70 ----------------------FKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETL 127 (159)
T ss_pred ----------------------cCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHH
Confidence 9999878899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q psy3664 498 SAIEKVE 504 (504)
Q Consensus 498 ~kI~~~~ 504 (504)
++|++++
T Consensus 128 ~~I~~~~ 134 (159)
T cd01923 128 EAMENVP 134 (159)
T ss_pred HHHHcCC
Confidence 9999864
No 9
>KOG0882|consensus
Probab=100.00 E-value=8.4e-40 Score=334.49 Aligned_cols=132 Identities=32% Similarity=0.469 Sum_probs=129.3
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
+.+ +|+.|+|.|.||++.||+||+||-..|++|||||.. |||||++ |||+|||.|+|+||+||||+.
T Consensus 407 aii--htt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~-------fhriik~fmiqtgdp~g~gtggesiwg~d--- 474 (558)
T KOG0882|consen 407 AII--HTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHT-------FHRIIKGFMIQTGDPLGDGTGGESIWGKD--- 474 (558)
T ss_pred eEE--EecccceEEEecccccchhhhhhhccccCccccCcc-------hHHhhhhheeecCCCCCCCCCCccccccc---
Confidence 566 999999999999999999999999999999999999 9999999 999999999999999999999
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTL 497 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL 497 (504)
|+||+.+.|+|+++-.|||||+|||+||||||||..+.|||||+|||||||+.||||+
T Consensus 475 ----------------------fedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vv 532 (558)
T KOG0882|consen 475 ----------------------FEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVV 532 (558)
T ss_pred ----------------------chhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q psy3664 498 SAIEKVE 504 (504)
Q Consensus 498 ~kI~~~~ 504 (504)
++|++++
T Consensus 533 qri~~v~ 539 (558)
T KOG0882|consen 533 QRIEQVK 539 (558)
T ss_pred hHhhhcc
Confidence 9999874
No 10
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=8.3e-39 Score=293.59 Aligned_cols=129 Identities=33% Similarity=0.484 Sum_probs=124.6
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCccccccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSRENTNQLK 422 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~~~~~~ 422 (504)
+|+.|+|+||||++.||+||+||+.||+.|||+++. |||++++ +|||||+.++|.++.++|+.+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~-------f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~-------- 67 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTI-------FHRLIKDFMIQGGDPTGTGRGGASIYGKK-------- 67 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcE-------EEEEcCCcEEEecccCCCCCCcccccCCC--------
Confidence 899999999999999999999999999999999999 9999999 999999999999999999877
Q ss_pred hhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHHHHHhh
Q psy3664 423 PKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 423 p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL~kI~~ 502 (504)
|++|..+.++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++
T Consensus 68 -----------------~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~ 130 (146)
T cd01922 68 -----------------FEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVE 130 (146)
T ss_pred -----------------cccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHh
Confidence 999987889999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy3664 503 VE 504 (504)
Q Consensus 503 ~~ 504 (504)
++
T Consensus 131 ~~ 132 (146)
T cd01922 131 VQ 132 (146)
T ss_pred CC
Confidence 64
No 11
>KOG0880|consensus
Probab=100.00 E-value=1.7e-38 Score=295.67 Aligned_cols=133 Identities=29% Similarity=0.396 Sum_probs=122.8
Q ss_pred eEEEe---eeCceeEEEEeecCCChhHHHHHHHHhhc---cC-CCCccccccceeEEEeeCC-cccccCCC-CCCCCCcc
Q psy3664 339 SRLKT---VTNETRDILDTFKREYKPTEAKVEEKVKA---DA-FNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPMKHET 409 (504)
Q Consensus 339 V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~~---g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~gg~s 409 (504)
|.+++ ....|+|+|+||+..+|+||+||..||.. || |.|+. ||||+|+ ||||||.+ |+|+||.|
T Consensus 42 V~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~-------FhRVi~nfmIQGGd~t~g~gtGg~S 114 (217)
T KOG0880|consen 42 VYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSK-------FHRVIPNFMIQGGDFTKGDGTGGKS 114 (217)
T ss_pred EEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCce-------eeeeecCceeecCccccCCCCCCeE
Confidence 44544 46779999999999999999999999994 33 77777 9999999 99999998 67999999
Q ss_pred cccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q psy3664 410 FWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGK 489 (504)
Q Consensus 410 ~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~ 489 (504)
|||.. |+||+ ..|+|+++|.|||||.|||+||||||||+..++||||+|+|||+
T Consensus 115 IyG~~-------------------------F~DEN-f~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGq 168 (217)
T KOG0880|consen 115 IYGEK-------------------------FPDEN-FKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQ 168 (217)
T ss_pred eecCC-------------------------CCCcc-ceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEee
Confidence 99999 99998 89999999999999999999999999999999999999999999
Q ss_pred EEccHHHHHHHhhCC
Q psy3664 490 MVGGMDTLSAIEKVE 504 (504)
Q Consensus 490 Vv~GmdvL~kI~~~~ 504 (504)
|++|||+|.+|+.++
T Consensus 169 Vl~Gmdvv~~Ie~~~ 183 (217)
T KOG0880|consen 169 VLEGMDVVRKIENVK 183 (217)
T ss_pred ehhhHHHHHHHHhcc
Confidence 999999999999864
No 12
>KOG0879|consensus
Probab=100.00 E-value=4e-38 Score=276.60 Aligned_cols=144 Identities=27% Similarity=0.368 Sum_probs=136.1
Q ss_pred CCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhhccC-CCCccccccceeEEEeeCC-cccccCCC-CCCCCCc
Q psy3664 335 KDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVKADA-FNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPMKHE 408 (504)
Q Consensus 335 ~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~gg~ 408 (504)
.+|+|.+++ .+..|+|.||||.|.+|+|++||.+.|.+.| -+|..+.|+++.|||+|++ ||||||.- |+|+|-.
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~ 88 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVA 88 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEE
Confidence 478888876 4788999999999999999999999999987 6888899999999999999 99999985 8899999
Q ss_pred ccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEE
Q psy3664 409 TFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFG 488 (504)
Q Consensus 409 s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG 488 (504)
||||.. |+||+ ..|+|+.+|+|||||+|+++||.|||||...|.+||++|+|||
T Consensus 89 sIy~~~-------------------------F~DEN-FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFG 142 (177)
T KOG0879|consen 89 SIYGST-------------------------FPDEN-FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFG 142 (177)
T ss_pred EEcCCC-------------------------CCCcc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEe
Confidence 999998 99998 8999999999999999999999999999999999999999999
Q ss_pred EEEccHHHHHHHhhCC
Q psy3664 489 KMVGGMDTLSAIEKVE 504 (504)
Q Consensus 489 ~Vv~GmdvL~kI~~~~ 504 (504)
+|++||.++.+||.+|
T Consensus 143 rvldGlli~rkIEnvp 158 (177)
T KOG0879|consen 143 RVLDGLLIMRKIENVP 158 (177)
T ss_pred eeehhhhhhhhhhcCC
Confidence 9999999999999986
No 13
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.4e-37 Score=289.75 Aligned_cols=136 Identities=29% Similarity=0.366 Sum_probs=123.3
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCccccccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSRENTNQLK 422 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~~~~~~ 422 (504)
+|+.|+|+||||++.||+||+||+.||+.+||+|+. ||||+++ ||||||+.++|.++.++|+..
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~-------fhrvi~~f~iQgGd~~~~g~~~~~~~~~~-------- 67 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCL-------FYNVQKDFIAQTGDPTGTGAGGESIYSQL-------- 67 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCE-------EEEEeCCceEEECCcCCCCCCCccccccc--------
Confidence 899999999999999999999999999999999999 9999999 999999999999999988532
Q ss_pred hhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCC-CCCCCCCCcEEEEEEccHHHHHHHh
Q psy3664 423 PKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRS-CNHLDGKHTVFGKMVGGMDTLSAIE 501 (504)
Q Consensus 423 p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~-~~~LD~k~tvFG~Vv~GmdvL~kI~ 501 (504)
.+.....|.+|..+.+.|+.+|+||||++++++++||||||+++ +++||++|+|||+|++|||||++|+
T Consensus 68 ----------~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~ 137 (166)
T cd01921 68 ----------YGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKIN 137 (166)
T ss_pred ----------ccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHH
Confidence 01112248888878899999999999999999999999999975 8999999999999999999999999
Q ss_pred hCC
Q psy3664 502 KVE 504 (504)
Q Consensus 502 ~~~ 504 (504)
+++
T Consensus 138 ~~~ 140 (166)
T cd01921 138 DAI 140 (166)
T ss_pred cCC
Confidence 764
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.8e-36 Score=281.64 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=125.6
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. |||++++ ||||||+.++|.++.++||.+
T Consensus 8 v~i--~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~-------f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~--- 75 (171)
T cd01925 8 VIL--KTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTI-------FHRVVPGFIIQGGDPTGTGTGGESIYGEP--- 75 (171)
T ss_pred EEE--EEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCE-------EEEEcCCcEEEccccCCCCccCcccCCCc---
Confidence 778 999999999999999999999999999999999999 9999999 999999999999999999887
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEE-ccHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMV-GGMDT 496 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv-~Gmdv 496 (504)
|++|..+.+.|+++|+||||++|+++++|||||+++++++||++|+|||+|+ +||++
T Consensus 76 ----------------------~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~ 133 (171)
T cd01925 76 ----------------------FKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYN 133 (171)
T ss_pred ----------------------cCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHH
Confidence 9999877888999999999999999999999999999999999999999999 46888
Q ss_pred HHHHhhCC
Q psy3664 497 LSAIEKVE 504 (504)
Q Consensus 497 L~kI~~~~ 504 (504)
|++|++++
T Consensus 134 v~~i~~~~ 141 (171)
T cd01925 134 LLKLAEVE 141 (171)
T ss_pred HHHHhcCC
Confidence 99998764
No 15
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.6e-35 Score=276.91 Aligned_cols=135 Identities=33% Similarity=0.478 Sum_probs=124.5
Q ss_pred CceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc--c------CCCCccccccceeEEEeeCC-cccccCCC-CC
Q psy3664 337 PESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA--D------AFNAAHYSQVWLVSSRKLRD-RIQKVDSK-LS 403 (504)
Q Consensus 337 p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g------~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~ 403 (504)
|+|.|++. ++.|+|+||||++.||++|+||+.||++ + ||+++. |||++|+ +|||||+. ++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~-------f~Rv~~~~~iq~Gd~~~~~ 73 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGST-------FHRVIPDFMIQGGDFTRGN 73 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCE-------EEEEeCCcEEEcCCccCCC
Confidence 55777775 5899999999999999999999999983 5 899999 9999999 99999985 77
Q ss_pred CCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCC
Q psy3664 404 PMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGK 483 (504)
Q Consensus 404 g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k 483 (504)
|.++.++|+.+ |++|. ..+.|+.+|+||||+.++++++|||||+++++++||++
T Consensus 74 g~~~~~~~g~~-------------------------~~~e~-~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~ 127 (164)
T cd01926 74 GTGGKSIYGEK-------------------------FPDEN-FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGK 127 (164)
T ss_pred CCCCCcccCCc-------------------------cCCCC-ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCc
Confidence 88999999887 88886 67899999999999999999999999999999999999
Q ss_pred CcEEEEEEccHHHHHHHhhCC
Q psy3664 484 HTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 484 ~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
|+|||+|++|||||++|++++
T Consensus 128 ~tvFG~V~~G~dvl~~i~~~~ 148 (164)
T cd01926 128 HVVFGKVVEGMDVVKKIENVG 148 (164)
T ss_pred ccEEEEEEEcHHHHHHHHcCC
Confidence 999999999999999999875
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=4.5e-35 Score=278.91 Aligned_cols=136 Identities=30% Similarity=0.442 Sum_probs=122.1
Q ss_pred CCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhccC--------CCCccccccceeEEEeeCC-cccccCCC-C
Q psy3664 336 DPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKADA--------FNAAHYSQVWLVSSRKLRD-RIQKVDSK-L 402 (504)
Q Consensus 336 ~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~--------Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~ 402 (504)
+|+|.|++. ++.|+|+||||.+.||+||+||+.||++.+ |+++. ||||+++ ||||||+. +
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~-------fhrVi~~f~iqgGd~~~~ 90 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQ-------FHRVIKDFMIQGGDFLKG 90 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcE-------EEEEcCCcEEEcCCcccC
Confidence 455777654 468999999999999999999999998654 77777 9999999 99999974 7
Q ss_pred CCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCC
Q psy3664 403 SPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDG 482 (504)
Q Consensus 403 ~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~ 482 (504)
+|.|+.++|+.. |++|. ..+.|..+|+||||++++++++||||||+.++|+||+
T Consensus 91 ~g~g~~~~~g~~-------------------------f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg 144 (186)
T PLN03149 91 DGTGCVSIYGSK-------------------------FEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDN 144 (186)
T ss_pred CCCCcccccCCc-------------------------cCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCC
Confidence 889999999877 88886 5678999999999999999999999999999999999
Q ss_pred CCcEEEEEE-ccHHHHHHHhhCC
Q psy3664 483 KHTVFGKMV-GGMDTLSAIEKVE 504 (504)
Q Consensus 483 k~tvFG~Vv-~GmdvL~kI~~~~ 504 (504)
+|+|||+|+ +|||||++|++++
T Consensus 145 ~~tVFG~Vi~eG~dvl~~I~~~~ 167 (186)
T PLN03149 145 KHVVFGRVLGDGLLVVRKIENVA 167 (186)
T ss_pred CceEEEEEEECcHHHHHHHHcCC
Confidence 999999999 7999999999874
No 17
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=5.5e-35 Score=277.79 Aligned_cols=136 Identities=30% Similarity=0.435 Sum_probs=123.6
Q ss_pred CCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhh---------ccCCCCccccccceeEEEeeCC-cccccCCC-
Q psy3664 336 DPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVK---------ADAFNAAHYSQVWLVSSRKLRD-RIQKVDSK- 401 (504)
Q Consensus 336 ~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~---------~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~- 401 (504)
+|.|.|++. ++.|+|+||||.+.||++|+||+.||+ .+||+++. ||||+|+ +|||||+.
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~-------fhRvi~~~~iqgGd~~~ 87 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSI-------FHRIIPQFMCQGGDITN 87 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeE-------EEEEcCCCeEEeCCccC
Confidence 345777663 578999999999999999999999997 46899999 9999999 99999986
Q ss_pred CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCC
Q psy3664 402 LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLD 481 (504)
Q Consensus 402 ~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD 481 (504)
++|.++.++||.. |++|. ..+.|..+|+||||+.++++++||||||++++++||
T Consensus 88 ~~g~~g~~~~g~~-------------------------~~~e~-~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ld 141 (183)
T PTZ00060 88 HNGTGGESIYGRK-------------------------FTDEN-FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLD 141 (183)
T ss_pred CCCCCCCcccccc-------------------------cCCcc-ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccC
Confidence 5788999999877 88885 678999899999999999999999999999999999
Q ss_pred CCCcEEEEEEccHHHHHHHhhCC
Q psy3664 482 GKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 482 ~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
++|+|||+|++|||||++|++++
T Consensus 142 g~~tvFG~Vi~G~dvl~~I~~~~ 164 (183)
T PTZ00060 142 GKHVVFGKVIEGMEVVRAMEKEG 164 (183)
T ss_pred CCccEEEEEEccHHHHHHHHccC
Confidence 99999999999999999998763
No 18
>KOG3039|consensus
Probab=100.00 E-value=1.6e-35 Score=282.78 Aligned_cols=159 Identities=30% Similarity=0.543 Sum_probs=145.5
Q ss_pred CCCCcCc-CCceeEeHHhhhhh-----cCCCCCCCCCCCccccCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhc-
Q psy3664 1 MGKRQHQ-SDKLYLTYTEWTTL-----YGGKKAGPEKSDFKRLPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQY- 73 (504)
Q Consensus 1 Mgk~~~~-~d~~~iT~~E~~~~-----~G~~k~~~~~~~~~~lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~- 73 (504)
|.+|.+| ++-.|+||+|.++. ||++.+|++++++ .||+||+|||||+++||||++|||||+||||+||..+
T Consensus 1 mtRH~kN~ta~avyTY~EkkkdaaasGYGTq~~RLgrDsi--K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaqK 78 (303)
T KOG3039|consen 1 MTRHGKNCTAGAVYTYHEKKKDAAASGYGTQRERLGRDSI--KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQK 78 (303)
T ss_pred CCccccCCccceeEeehhhcchhhhcCcchhhhhhccccc--CCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHHH
Confidence 7788777 99999999999984 9999999999999 7799999999999999999999999999999999211
Q ss_pred --------------------------------------------------------------------------------
Q psy3664 74 -------------------------------------------------------------------------------- 73 (504)
Q Consensus 74 -------------------------------------------------------------------------------- 73 (504)
T Consensus 79 ke~arrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k 158 (303)
T KOG3039|consen 79 KEIARRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQESTPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLK 158 (303)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhccccccccccCCCCcchhhhccCccccCCccccCccccccc
Confidence
Q ss_pred -------------------------CCCCCCCCcCCCCCceeEeeeeCCC-----------CceeeccceeeecCceeEE
Q psy3664 74 -------------------------KHNPVTGKPLDVKSLIKLNFHKNAK-----------GEYHCPVLYKVFSKHSHLV 117 (504)
Q Consensus 74 -------------------------~~~Pvtg~~l~~kdLi~l~f~~n~~-----------~~~~CPvt~k~f~~~t~~v 117 (504)
-.||+.|+||.++||++++|+.... ..|+||||..+++|.+..+
T Consensus 159 ~lpsFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca 238 (303)
T KOG3039|consen 159 TLPSFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCA 238 (303)
T ss_pred cccceecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceE
Confidence 1299999999999999999999653 5599999999999999999
Q ss_pred EEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCCCC
Q psy3664 118 AIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNE 163 (504)
Q Consensus 118 ~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp~~ 163 (504)
++++||+||+++|+++|. .+.+.|||||+|+++.|||.||+=..
T Consensus 239 ~Lr~sg~Vv~~ecvEkli--r~D~v~pv~d~plkdrdiI~LqrGGT 282 (303)
T KOG3039|consen 239 VLRPSGHVVTKECVEKLI--RKDMVDPVTDKPLKDRDIIGLQRGGT 282 (303)
T ss_pred EeccCCcEeeHHHHHHhc--cccccccCCCCcCcccceEeeecccc
Confidence 999999999999999999 56779999999999999999997653
No 19
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1e-34 Score=277.26 Aligned_cols=132 Identities=25% Similarity=0.297 Sum_probs=114.8
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCc
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHS 414 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~ 414 (504)
++.|.| +|+.|+|+||||++.||+||+||++||+.|||+|+. |||++++ ||||||+.+... ...++.+
T Consensus 28 ~~~v~l--~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~-------FhRvi~~f~iQgG~~~~~~~--~~~~~~~ 96 (190)
T PRK10903 28 DPHVLL--TTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTT-------FHRVIPGFMIQGGGFTEQMQ--QKKPNPP 96 (190)
T ss_pred CcEEEE--EeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcE-------EEEEeCCceEEeCCcCCCCC--CCCCCCc
Confidence 344888 999999999999999999999999999999999999 9999999 999999875432 1223444
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCC-CCCCCccEEEEcCCCCCCCC-----CCcEEE
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG-PNTNTSQFFITYRSCNHLDG-----KHTVFG 488 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansg-pns~~SQFfItl~~~~~LD~-----k~tvFG 488 (504)
|.+|....+. +.+|+||||+.+ +|+|+|||||+++++++||+ +|+|||
T Consensus 97 -------------------------~~~e~~~~l~-~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG 150 (190)
T PRK10903 97 -------------------------IKNEADNGLR-NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFG 150 (190)
T ss_pred -------------------------ccCcccccCc-CCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEE
Confidence 8888755554 469999999976 99999999999999999984 899999
Q ss_pred EEEccHHHHHHHhhCC
Q psy3664 489 KMVGGMDTLSAIEKVE 504 (504)
Q Consensus 489 ~Vv~GmdvL~kI~~~~ 504 (504)
+|++|||||++|++++
T Consensus 151 ~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 151 KVVKGMDVADKISQVP 166 (190)
T ss_pred EEecCHHHHHHHHcCC
Confidence 9999999999999864
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.2e-34 Score=270.82 Aligned_cols=129 Identities=26% Similarity=0.361 Sum_probs=111.6
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+++. ||||+++ ||||||+.. +.+ ...|+.+
T Consensus 2 v~~--~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~-------fhRvi~~f~iQgGd~~~-~~~-~~~~~~~--- 67 (164)
T PRK10791 2 VTF--HTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI-------FHRVINGFMIQGGGFEP-GMK-QKATKEP--- 67 (164)
T ss_pred EEE--EEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcE-------EEEEecCcEEEeCCcCC-CCC-cCCCCCC---
Confidence 667 999999999999999999999999999999999999 9999999 999999752 221 1223444
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCC-CCCCCccEEEEcCCCCCCC-------C-CCcEEE
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG-PNTNTSQFFITYRSCNHLD-------G-KHTVFG 488 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansg-pns~~SQFfItl~~~~~LD-------~-k~tvFG 488 (504)
|++|....+.| .+|+||||+.+ |++++|||||++.++++|| + +|+|||
T Consensus 68 ----------------------~~~e~~~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG 124 (164)
T PRK10791 68 ----------------------IKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124 (164)
T ss_pred ----------------------cCCcccccccC-CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEE
Confidence 78886556666 69999999986 9999999999999988876 3 799999
Q ss_pred EEEccHHHHHHHhhCC
Q psy3664 489 KMVGGMDTLSAIEKVE 504 (504)
Q Consensus 489 ~Vv~GmdvL~kI~~~~ 504 (504)
+|++|||||++|++++
T Consensus 125 ~V~eG~dvl~~I~~~~ 140 (164)
T PRK10791 125 EVVEGMDVVDKIKGVA 140 (164)
T ss_pred EEecCHHHHHHHHcCc
Confidence 9999999999999864
No 21
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.7e-34 Score=284.31 Aligned_cols=144 Identities=21% Similarity=0.227 Sum_probs=119.9
Q ss_pred hhcCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhccC----CCCccccccceeEEEeeCC--cccccCCCC
Q psy3664 332 EQLKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKADA----FNAAHYSQVWLVSSRKLRD--RIQKVDSKL 402 (504)
Q Consensus 332 ~~~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~----Y~g~~~s~~~~~fhRvi~~--~iQgGDp~~ 402 (504)
+....|+|.|++. ...|+|+||||.|.||+||+||+.||++.+ +.|..++|.++.||||+++ |||+||+.+
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 4456788999553 357889999999999999999999998532 1122223333339999985 999999875
Q ss_pred CCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCC
Q psy3664 403 SPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDG 482 (504)
Q Consensus 403 ~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~ 482 (504)
++.++||.+ |+||. ..++|+.+|+|||||.|||+|||||||||.++++||+
T Consensus 128 ---~g~s~~G~~-------------------------f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDg 178 (249)
T PTZ00221 128 ---FNVSSTGTP-------------------------IADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDF 178 (249)
T ss_pred ---CCccCCCCc-------------------------ccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCC
Confidence 345677777 99997 5789999999999999999999999999999999999
Q ss_pred CCcEEEEEEccHHHHHHHhhCC
Q psy3664 483 KHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 483 k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
+|+|||+|++|||||++|++++
T Consensus 179 k~vVFGrVveGmdVv~kIe~v~ 200 (249)
T PTZ00221 179 KQVVFGKAVDDLSLLEKLESLP 200 (249)
T ss_pred CceEEEEEEeCHHHHHHHHcCC
Confidence 9999999999999999999874
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.6e-34 Score=267.77 Aligned_cols=126 Identities=24% Similarity=0.304 Sum_probs=110.8
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCccccccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSRENTNQLK 422 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~~~~~~ 422 (504)
+|+.|+|+|+||++.||+||+||+.||+.|||+++. ||||+|+ ||||||+...+.+ ..++.+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~-------fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~-------- 65 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTI-------FHRVISGFVIQGGGFTPDLAQ--KETLKP-------- 65 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCE-------EEEEeCCcEEEeCCCCCCCCc--cccCCc--------
Confidence 899999999999999999999999999999999999 9999999 9999999755433 223334
Q ss_pred hhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCC-CCCCCccEEEEcCCCCCCCC-----CCcEEEEEEccHHH
Q psy3664 423 PKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG-PNTNTSQFFITYRSCNHLDG-----KHTVFGKMVGGMDT 496 (504)
Q Consensus 423 p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansg-pns~~SQFfItl~~~~~LD~-----k~tvFG~Vv~Gmdv 496 (504)
|.+|....+ |+.+|+||||+++ |++++|||||+++++++||+ +|+|||+|++||||
T Consensus 66 -----------------~~~e~~~~~-~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dv 127 (155)
T cd01920 66 -----------------IKNEAGNGL-SNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDV 127 (155)
T ss_pred -----------------ccCcccccc-cCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHH
Confidence 777764444 4579999999976 99999999999999999995 79999999999999
Q ss_pred HHHHhhCC
Q psy3664 497 LSAIEKVE 504 (504)
Q Consensus 497 L~kI~~~~ 504 (504)
|++|++++
T Consensus 128 l~~I~~~~ 135 (155)
T cd01920 128 VDKIAGVE 135 (155)
T ss_pred HHHHHcCC
Confidence 99999875
No 23
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=3.1e-34 Score=270.89 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=110.8
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCccc-ccCcccccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETF-WTHSRENTNQL 421 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~-~g~~~~~~~~~ 421 (504)
.|+.|+|+|+||++.||.||+||+.||+.|||+++. ||||+++ |||||||.+++.++... .+..+ .+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~-------FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~----~~ 71 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGME-------FHRVEGGFVVQTGDPQGKNPGFPDPETGKSR----TI 71 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCE-------EEEecCCcEEEecCCCCCCCCcccccccccc----cc
Confidence 689999999999999999999999999999999999 9999999 99999998765553211 01110 01
Q ss_pred chhhhccccccCCCCCcccc----CCCCCCCCCCCCcEEEEecCC--CCCCCccEEEEcC-------CCCCCCCCCcEEE
Q psy3664 422 KPKLKRRSKQTHSMQPTILK----KNTKPNYTHTGRGVLSMANSG--PNTNTSQFFITYR-------SCNHLDGKHTVFG 488 (504)
Q Consensus 422 ~p~~~~~~~~~~~~~~~~f~----de~~~~l~h~~rG~lsmansg--pns~~SQFfItl~-------~~~~LD~k~tvFG 488 (504)
+.+.+.... +.+.....+. ++..+.+.|..+|+||||+++ ||+++|||||+++ ++++||++|+|||
T Consensus 72 p~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG 150 (176)
T cd01924 72 PLEIKPEGQ-KQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFG 150 (176)
T ss_pred cceecccCC-CCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEE
Confidence 111111000 0000001121 222355677789999999988 7999999999998 7999999999999
Q ss_pred EEEccHHHHHHHhh
Q psy3664 489 KMVGGMDTLSAIEK 502 (504)
Q Consensus 489 ~Vv~GmdvL~kI~~ 502 (504)
+|++|||||++|+.
T Consensus 151 ~VveG~dvl~~I~~ 164 (176)
T cd01924 151 YVTDGLDILRELKV 164 (176)
T ss_pred EEecCHHHHHhhcC
Confidence 99999999999975
No 24
>KOG0885|consensus
Probab=100.00 E-value=3.5e-34 Score=287.56 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=122.5
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| .|+.|+|.||||+..||++|.||++||-.|||+|+. |||++|+ ++|||||+|+|+||+||||.+
T Consensus 15 vil--~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~-------fhrlvp~f~~Qggdp~~~gtGgesiyg~~--- 82 (439)
T KOG0885|consen 15 VIL--KTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTE-------FHRLVPGFLVQGGDPTGTGTGGESIYGRP--- 82 (439)
T ss_pred EEE--EeccCceeeeehhhhhhHHHHHHHHHHHhccccCce-------eeeeccchhcccCCCCCCCCCcccccccc---
Confidence 888 999999999999999999999999999999999999 9999999 999999999999999999999
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEc-cHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG-GMDT 496 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~-Gmdv 496 (504)
|.||++++|.+++||+|+|||.|.+.|||||||||+++|+|+++||+||+|++ ..-.
T Consensus 83 ----------------------fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn 140 (439)
T KOG0885|consen 83 ----------------------FADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYN 140 (439)
T ss_pred ----------------------chhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhh
Confidence 99999999999999999999999999999999999999999999999999995 4444
Q ss_pred HHHHh
Q psy3664 497 LSAIE 501 (504)
Q Consensus 497 L~kI~ 501 (504)
+-+|.
T Consensus 141 ~lri~ 145 (439)
T KOG0885|consen 141 MLRIS 145 (439)
T ss_pred hhhhc
Confidence 44444
No 25
>KOG0111|consensus
Probab=100.00 E-value=3.6e-34 Score=270.16 Aligned_cols=127 Identities=28% Similarity=0.339 Sum_probs=121.1
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhc--cC-CCCccccccceeEEEeeCC-cccccCCC-CCCCCCcccccCccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKA--DA-FNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPMKHETFWTHSRENT 418 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~gg~s~~g~~~~~~ 418 (504)
....|+|+++|..|..|+|++||..||.. || |.|+. ||||||. |+||||.+ ++|+||.||||..
T Consensus 147 ~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgss-------fhriip~fmcqggdftn~ngtggksiygkk---- 215 (298)
T KOG0111|consen 147 EDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSS-------FHRIIPKFMCQGGDFTNGNGTGGKSIYGKK---- 215 (298)
T ss_pred ccccceEEEeecccCChhhhhhhhhhccccCccCccccc-------hhhhhhhhhccCCccccCCCCCCccccccc----
Confidence 56789999999999999999999999974 66 99999 9999999 99999998 7899999999999
Q ss_pred cccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHHH
Q psy3664 419 NQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLS 498 (504)
Q Consensus 419 ~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL~ 498 (504)
|.||+ ..|+|+.+|+|||||+|+|+|||||||+.....||||+|+|||.|++||+||.
T Consensus 216 ---------------------fdden-f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvr 273 (298)
T KOG0111|consen 216 ---------------------FDDEN-FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVR 273 (298)
T ss_pred ---------------------ccccc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHH
Confidence 99998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q psy3664 499 AIEKV 503 (504)
Q Consensus 499 kI~~~ 503 (504)
+|++.
T Consensus 274 q~e~q 278 (298)
T KOG0111|consen 274 QVEQQ 278 (298)
T ss_pred HHHhc
Confidence 99863
No 26
>PF04641 Rtf2: Rtf2 RING-finger
Probab=100.00 E-value=9e-34 Score=283.41 Aligned_cols=146 Identities=29% Similarity=0.494 Sum_probs=126.4
Q ss_pred CCCCCccccCCccccCCCCCCCCce-ecCCCcEEeHHHHHHHHHhcCC----CCCCCCcCCCCCceeEeeeeCC------
Q psy3664 29 PEKSDFKRLPFDHCCVSLQPYEHPY-CDKDGNIFELEALMGYLKQYKH----NPVTGKPLDVKSLIKLNFHKNA------ 97 (504)
Q Consensus 29 ~~~~~~~~lpf~~C~Lsl~pl~~Pv-~~~~G~lf~k~~Il~~L~~~~~----~Pvtg~~l~~kdLi~l~f~~n~------ 97 (504)
......+.++|++|+||++||+.|| ||..|+|||+++||+||++++. .+...|+.+++||++|+|+.|+
T Consensus 24 ~d~~~~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~ 103 (260)
T PF04641_consen 24 VDKEEEREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEED 103 (260)
T ss_pred cCHhHHhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCcccccc
Confidence 4466777889999999999999995 7899999999999999999864 3355788999999999999984
Q ss_pred -------CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCCCCcchhccc
Q psy3664 98 -------KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLT 170 (504)
Q Consensus 98 -------~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp~~~~~~~~~ 170 (504)
.+.|+||||+++|+++++|||||+|||||+++||+++. +.|.||+|++||++.|||+||++.+.......
T Consensus 104 ~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~ 180 (260)
T PF04641_consen 104 KSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRE 180 (260)
T ss_pred ccccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCEEEecCCccHHHHHHH
Confidence 78899999999999999999999999999999999995 56789999999999999999999883333344
Q ss_pred ccccccc
Q psy3664 171 NFHHLKN 177 (504)
Q Consensus 171 ~f~h~k~ 177 (504)
.+.+.+.
T Consensus 181 ~~~~~~~ 187 (260)
T PF04641_consen 181 RMEERKA 187 (260)
T ss_pred HHHHHHh
Confidence 4544443
No 27
>KOG0415|consensus
Probab=100.00 E-value=2.7e-33 Score=279.11 Aligned_cols=137 Identities=30% Similarity=0.368 Sum_probs=130.4
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|++|+|+|+||.+.+|.+|.||++||+..|||.+. ||.|..+ .+|.|||+|+|.||.||||.-
T Consensus 3 Vli--eTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~cl-------fh~vq~~f~aQTGDPtGtG~GG~si~~~l--- 70 (479)
T KOG0415|consen 3 VLI--ETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCL-------FHTVQRDFTAQTGDPTGTGDGGESIYGVL--- 70 (479)
T ss_pred EEE--EeecccEEeeeecccCcHHHHHHHHHHhHhhcccce-------eeeccccceeecCCCCCCCCCcceeeeec---
Confidence 677 999999999999999999999999999999999999 9999999 999999999999999999865
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcC-CCCCCCCCCcEEEEEEccHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYR-SCNHLDGKHTVFGKMVGGMDT 496 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~-~~~~LD~k~tvFG~Vv~Gmdv 496 (504)
++.+...|+.|+.|.+.|.+.|+|||++.|.|-+||||||||+ +...|||+|+|||+|++|||+
T Consensus 71 ---------------yG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dt 135 (479)
T KOG0415|consen 71 ---------------YGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDT 135 (479)
T ss_pred ---------------ccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHH
Confidence 5667778999999999999999999999999999999999998 467999999999999999999
Q ss_pred HHHHhh
Q psy3664 497 LSAIEK 502 (504)
Q Consensus 497 L~kI~~ 502 (504)
|.+|+.
T Consensus 136 l~kiNe 141 (479)
T KOG0415|consen 136 LTKINE 141 (479)
T ss_pred HHHHHH
Confidence 999975
No 28
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.5e-32 Score=251.06 Aligned_cols=128 Identities=35% Similarity=0.438 Sum_probs=117.0
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCccccccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSRENTNQLK 422 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~~~~~~ 422 (504)
+|+.|+|+|+||++.||++|+||+.||+.++|+++. |||++++ +||+||+.+.+.++ +.++..
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~-------f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~-------- 66 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTT-------FHRVIPGFMIQGGDPTGTGGGG-SGPGYK-------- 66 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCE-------EEEEeCCCeEEECCCCCCCCCC-CcCCCc--------
Confidence 899999999999999999999999999999999999 9999999 99999998665443 344444
Q ss_pred hhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHHHHHhh
Q psy3664 423 PKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 423 p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL~kI~~ 502 (504)
|++|..+...|.++|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|+.
T Consensus 67 -----------------~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~ 129 (146)
T cd00317 67 -----------------FPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIER 129 (146)
T ss_pred -----------------cCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHc
Confidence 899987777688899999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy3664 503 VE 504 (504)
Q Consensus 503 ~~ 504 (504)
++
T Consensus 130 ~~ 131 (146)
T cd00317 130 GD 131 (146)
T ss_pred CC
Confidence 64
No 29
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.97 E-value=1.1e-30 Score=241.03 Aligned_cols=131 Identities=31% Similarity=0.410 Sum_probs=113.8
Q ss_pred eEEEeeeC-ceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCc--ccccCc
Q psy3664 339 SRLKTVTN-ETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHE--TFWTHS 414 (504)
Q Consensus 339 V~l~~~T~-~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~--s~~g~~ 414 (504)
|.| +|+ .|+|+|+||++.||++|+||++||+.|+|+|+. |||++++ +||+||+.+.+..+. ..++.+
T Consensus 2 ~~i--~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~-------f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~ 72 (155)
T PF00160_consen 2 VDI--ETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTK-------FHRIIPNFVIQGGDPTGNGGYGREDSTGGEP 72 (155)
T ss_dssp EEE--EETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEB-------EEEEETTTEEEESSTTTSSSSTSEEBTTBSC
T ss_pred EEE--EeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCce-------eecccccceeeeeeccCCCCcccccccCccc
Confidence 455 897 999999999999999999999999999999999 9999999 999999986544211 122222
Q ss_pred cccccccchhhhccccccCCCCCccccCCCC-CCCCCCCCcEEEEecCC--CCCCCccEEEEcCCCCCCCCCCcEEEEEE
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTK-PNYTHTGRGVLSMANSG--PNTNTSQFFITYRSCNHLDGKHTVFGKMV 491 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~-~~l~h~~rG~lsmansg--pns~~SQFfItl~~~~~LD~k~tvFG~Vv 491 (504)
+++|.. ..+.| .+|+|+|++.+ +++++|||||+|+++++||++|+|||+|+
T Consensus 73 -------------------------~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~ 126 (155)
T PF00160_consen 73 -------------------------IPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVI 126 (155)
T ss_dssp -------------------------BSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEE
T ss_pred -------------------------cccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEe
Confidence 888875 34667 79999999986 89999999999999999999999999999
Q ss_pred ccHHHHHHHhhCC
Q psy3664 492 GGMDTLSAIEKVE 504 (504)
Q Consensus 492 ~GmdvL~kI~~~~ 504 (504)
+||+||++|++++
T Consensus 127 ~G~~vl~~i~~~~ 139 (155)
T PF00160_consen 127 EGMDVLDKIEAGP 139 (155)
T ss_dssp EHHHHHHHHHTSB
T ss_pred hhHHHHHHHHCCC
Confidence 9999999999763
No 30
>KOG0865|consensus
Probab=99.94 E-value=3.6e-27 Score=219.20 Aligned_cols=134 Identities=30% Similarity=0.433 Sum_probs=120.8
Q ss_pred CCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhhc--cC-CCCccccccceeEEE---eeCC-cccccCCC-CCC
Q psy3664 336 DPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVKA--DA-FNAAHYSQVWLVSSR---KLRD-RIQKVDSK-LSP 404 (504)
Q Consensus 336 ~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g~-Y~g~~~s~~~~~fhR---vi~~-~iQgGDp~-~~g 404 (504)
+|.|.+++ ....|++.++||.|..|+|++||..||.. |+ |.+.. ||| .+++ |+||||.+ ++|
T Consensus 3 ~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~-------fhr~~~~~~~fm~qggDft~hng 75 (167)
T KOG0865|consen 3 NPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSC-------FHRLIPIIPGFMCQGGDFTCHNG 75 (167)
T ss_pred CCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccch-------hhhccccccceeeccCcccccCC
Confidence 56677766 57889999999999999999999999974 33 66666 999 4446 99999998 788
Q ss_pred CCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCC
Q psy3664 405 MKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKH 484 (504)
Q Consensus 405 ~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~ 484 (504)
+||.|+|++. |+||+ ..++|..+|+|||||.|||+|+|||||+.+...|||++|
T Consensus 76 tggkSiy~ek-------------------------F~Den-FilkhtgpGiLSmaNagpntngsqffictaktewLdgkh 129 (167)
T KOG0865|consen 76 TGGKSIYGEK-------------------------FDDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 129 (167)
T ss_pred ccceEecccc-------------------------cCCcC-cEEecCCCCeeehhhcCCCccccEEEEEccccccccCce
Confidence 9999999998 99998 899999999999999999999999999999889999999
Q ss_pred cEEEEEEccHHHHHHHhh
Q psy3664 485 TVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 485 tvFG~Vv~GmdvL~kI~~ 502 (504)
+|||+|.+||+|+++|+.
T Consensus 130 VVfGkv~eGm~iv~a~e~ 147 (167)
T KOG0865|consen 130 VVFGKVKEGMDIVEAMER 147 (167)
T ss_pred eEcCceEcccchhhhhhc
Confidence 999999999999999975
No 31
>KOG3113|consensus
Probab=99.88 E-value=2.9e-23 Score=199.64 Aligned_cols=129 Identities=17% Similarity=0.362 Sum_probs=113.4
Q ss_pred CCCCCCCccccCCccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcCCCC-CCCCcCCCCCceeEeeeeCC-------
Q psy3664 27 AGPEKSDFKRLPFDHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYKHNP-VTGKPLDVKSLIKLNFHKNA------- 97 (504)
Q Consensus 27 ~~~~~~~~~~lpf~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~~~P-vtg~~l~~kdLi~l~f~~n~------- 97 (504)
+.+..+..+--.|.+|+|+.+||..| |+|..|.||+++.|+++|+....-| ...|+.+++|++.|+++.|+
T Consensus 22 ek~Dkd~~r~sqw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksaShIKslKDvveLklt~n~~~~gD~~ 101 (293)
T KOG3113|consen 22 EKVDKDAERVSQWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSASHIKSLKDVVELKLTLNPAFEGDKG 101 (293)
T ss_pred CccChhHHHHHHHhhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcchhhhcchhhHhheecccCcccccccC
Confidence 44555554445899999999999999 6699999999999999999886555 34789999999999999983
Q ss_pred -------CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEec
Q psy3664 98 -------KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 98 -------~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
...|+|||++.+|++..+|++||+|||||+++|++++... .|++|+.+|..+|+|+|+
T Consensus 102 ~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas----~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 102 NKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKAS----VCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred ccccccccceeecccccceecceEEEEEEeccceeccHHHHHHhhhc----cccccCCcccccCeEeeC
Confidence 1359999999999999999999999999999999999844 699999999999999876
No 32
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.05 E-value=2.4e-10 Score=89.48 Aligned_cols=54 Identities=30% Similarity=0.411 Sum_probs=50.8
Q ss_pred ccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEee
Q psy3664 40 DHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (504)
..|+||++++++||++++||+|++++|.+|+++++.||+||++++.+||+++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~ 55 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLA 55 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHH
Confidence 369999999999999999999999999999999999999999999999998743
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.85 E-value=2e-09 Score=87.52 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=44.6
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~l 91 (504)
..+|+||+..|.+||+.++|++|++.+|..||.. .+.||+|+++++..+|++-
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 4579999999999999999999999999999999 8899999999999999875
No 34
>KOG0317|consensus
Probab=98.52 E-value=5.9e-08 Score=96.62 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=53.5
Q ss_pred CCccccCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEe
Q psy3664 32 SDFKRLPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 32 ~~~~~lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (504)
.++-+.+-.-|.||+++.++|-||++||||||.||++|+.+...||+++++....++|-|.
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeeec
Confidence 3343345567999999999999999999999999999999999999999999999988763
No 35
>KOG0826|consensus
Probab=98.44 E-value=5.1e-08 Score=98.35 Aligned_cols=54 Identities=33% Similarity=0.624 Sum_probs=50.2
Q ss_pred CCccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l 91 (504)
.-.-||+|++...+| ||...|+|||+.||..|+.++++|||||.|++..+|++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl 353 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRL 353 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHH
Confidence 344599999999999 888899999999999999999999999999999999987
No 36
>KOG0823|consensus
Probab=98.38 E-value=2.3e-07 Score=89.97 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=50.6
Q ss_pred cCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhc---CCCCCCCCcCCCCCceeEe
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQY---KHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~---~~~Pvtg~~l~~kdLi~l~ 92 (504)
--+.-|-|||...++||+|.+||||||-||.+||..+ ..|||+.-.++.+.||+|-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3477799999999999999999999999999999766 4589999999999999993
No 37
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.25 E-value=1.2e-06 Score=83.45 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhc
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQY 73 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~ 73 (504)
-...|+||++++++||++.+||+||+.||..|+...
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s 52 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYAS 52 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhc
Confidence 345699999999999999999999999999999753
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.25 E-value=4.7e-07 Score=70.24 Aligned_cols=42 Identities=40% Similarity=0.735 Sum_probs=29.3
Q ss_pred CccccCCCCCCCCceec-CCCcEEeHHHHHHHHHh--cCCCCCCC
Q psy3664 39 FDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQ--YKHNPVTG 80 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~--~~~~Pvtg 80 (504)
-..||||++||++||.+ .+||+|++++|++||.. ...||+.|
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 35699999999999885 66999999999999933 34578765
No 39
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.22 E-value=1.1e-06 Score=68.54 Aligned_cols=53 Identities=23% Similarity=0.489 Sum_probs=46.2
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
+|+||||+..|.+- ++.+|||||+++++.+.... ...||+|+++++.+|+|.+
T Consensus 1 ~~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKDP----VILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhceeC
Confidence 47899999999985 45699999999999998754 5589999999999999975
No 40
>KOG0320|consensus
Probab=98.03 E-value=3.4e-06 Score=78.80 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=53.8
Q ss_pred CccccCCccccCCCCCCCC--ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEee
Q psy3664 33 DFKRLPFDHCCVSLQPYEH--PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 33 ~~~~lpf~~C~Lsl~pl~~--Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (504)
....-+-..||||+.++.. ||.+.+|||||++||-..|+...+||+++..+..+++++|.+
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 3344566889999999985 688999999999999999999999999999999999998853
No 41
>KOG2164|consensus
Probab=98.03 E-value=3.4e-06 Score=89.97 Aligned_cols=56 Identities=20% Similarity=0.387 Sum_probs=51.4
Q ss_pred cccCCCCCCCCceecCCCcEEeHHHHHHHHH-----hcCCCCCCCCcCCCCCceeEeeeeC
Q psy3664 41 HCCVSLQPYEHPYCDKDGNIFELEALMGYLK-----QYKHNPVTGKPLDVKSLIKLNFHKN 96 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~-----~~~~~Pvtg~~l~~kdLi~l~f~~n 96 (504)
.||||+.|..-|+.|.+||+||..|||+|+. .++.||+++..+.++||.++.+...
T Consensus 188 ~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 188 QCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred cCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 6999999999999999999999999999994 4578999999999999999977664
No 42
>KOG0289|consensus
Probab=97.94 E-value=4.2e-06 Score=87.41 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=49.9
Q ss_pred cccCCCCCCCCceecC-CCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEee
Q psy3664 41 HCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (504)
.|+||.+--++||+.+ .|+||+|+-|.+||+++|+||||++||++.|||+|+-
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~ 55 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKV 55 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccc
Confidence 5999999999998876 5999999999999999999999999999999999964
No 43
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.73 E-value=3.8e-05 Score=54.64 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=32.7
Q ss_pred ccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcCCCCC
Q psy3664 42 CCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYKHNPV 78 (504)
Q Consensus 42 C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~~~Pv 78 (504)
|+||++.+.+| ++++.||+|++++|..|++....+|+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence 89999999999 68999999999999999999888886
No 44
>KOG0978|consensus
Probab=97.66 E-value=1e-05 Score=90.09 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=47.4
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
+-.-||+|...+-+ ++|..||||||+.||+..- .....+||-|+.+|...||.+|
T Consensus 642 ~~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~-etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD----AVITKCGHVFCEECVQTRY-ETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCchhh----HHHHhcchHHHHHHHHHHH-HHhcCCCCCCCCCCCccccccc
Confidence 34679999866655 5899999999999999986 4577799999999999999876
No 45
>KOG0320|consensus
Probab=97.58 E-value=3.3e-05 Score=72.31 Aligned_cols=57 Identities=16% Similarity=0.308 Sum_probs=46.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
.+.|-||||...+..... +--.||||||.+||+.+... ..+||+|.++++.++++.|
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITHKQFHRI 185 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHh--CCCCCCcccccchhhheec
Confidence 466999999988876522 23679999999999998844 4589999999999988765
No 46
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.8e-05 Score=75.27 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=47.4
Q ss_pred cCCcc-----ccCCCCCCCCceecCCCcEEeHHHHHH-HHHhcC-CCCCCCCcCCCCCceeE
Q psy3664 37 LPFDH-----CCVSLQPYEHPYCDKDGNIFELEALMG-YLKQYK-HNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 37 lpf~~-----C~Lsl~pl~~Pv~~~~G~lf~k~~Il~-~L~~~~-~~Pvtg~~l~~kdLi~l 91 (504)
+||-- |+||+++...|+|+++|||||+.||+. |=++.- .||+++....++++|=|
T Consensus 208 ~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 208 LPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred CCcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 55555 999999999999999999999999999 876654 59999999888887544
No 47
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.38 E-value=0.00017 Score=58.56 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=42.2
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..|.||+|+..|.+- ++.++|++|..++|++.... ....||+|+.+++.+|+|.
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceE
Confidence 369999999999987 57799999999999998743 3568999999999999986
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.37 E-value=0.00016 Score=52.91 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=22.8
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhcc--CCcccC
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKT--KSFKDL 144 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~--k~~~c~ 144 (504)
||||.. |++..+.-++-+|||||+++||++|.... ..++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999988 87755554445599999999999998653 345664
No 49
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.00017 Score=76.48 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=43.4
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCc
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdL 88 (504)
....|+||+..+.+||++++||.||..||..||.....||++++++...+|
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 356899999999999999999999999999999887778887777654433
No 50
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.24 E-value=0.00028 Score=69.98 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCccccCCCCCCCCc--------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 38 PFDHCCVSLQPYEHP--------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P--------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
.-..|+||++++.++ +.+++||+||.+||.+|++.+..||+++.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 346799999998763 56789999999999999999999999987654
No 51
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.20 E-value=0.00036 Score=66.76 Aligned_cols=58 Identities=9% Similarity=0.322 Sum_probs=46.4
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhh--------------ccCCcccCCCCcCCCCCCeeEec
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNI--------------KTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~--------------~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
.+.+.||||...+.+- ++-+|||+||+.||.+... ..+..+||+|-.+++..++|+|-
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4679999999988754 3468999999999987532 12346899999999999999883
No 52
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.00025 Score=72.45 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=44.1
Q ss_pred ceeecccee--eecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCe
Q psy3664 100 EYHCPVLYK--VFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 100 ~~~CPvt~k--~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~Di 155 (504)
++.||+|.. .++...++.+. +|||+||..||+.+-.. ....||+|++++.+.+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcC-CCCCCCCCCCccchhhc
Confidence 478999987 57777777766 99999999999998633 44589999999998874
No 53
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.08 E-value=0.0006 Score=49.63 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=33.4
Q ss_pred ccccCCCCCCC---CceecCCCcEEeHHHHHHHHHhcCCCCCC
Q psy3664 40 DHCCVSLQPYE---HPYCDKDGNIFELEALMGYLKQYKHNPVT 79 (504)
Q Consensus 40 ~~C~Lsl~pl~---~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvt 79 (504)
|.|+||++.+. .++..+.||+|...+|.+||+.+..||+.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~C 43 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVC 43 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTT
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCcc
Confidence 57999999995 34668899999999999999999988874
No 54
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.00 E-value=0.00075 Score=49.02 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=28.9
Q ss_pred ccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC
Q psy3664 42 CCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK 74 (504)
Q Consensus 42 C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~ 74 (504)
|+||++.|++||..+.||.|++.+|..|.++..
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC
Confidence 899999999999999999999999999997654
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.84 E-value=0.001 Score=51.63 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=31.9
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTD 147 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~ 147 (504)
.+.||+|.+.|.+- |.-+.|||||..++|.++....+..+||+.|
T Consensus 11 ~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 48899999999876 5567899999999999988666678899944
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.74 E-value=0.0024 Score=47.82 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=39.9
Q ss_pred ccccCCCCCCCCceecCCCcE-EeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 40 DHCCVSLQPYEHPYCDKDGNI-FELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
..|.||++...+++..+.||+ |+..++..|++....||+.+.+++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 369999999999999999999 999999999999999999988764
No 57
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.61 E-value=0.0033 Score=44.80 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=32.0
Q ss_pred ccCCCCCCCCce-ecCCCcEEeHHHHHHHHHh--cCCCCC
Q psy3664 42 CCVSLQPYEHPY-CDKDGNIFELEALMGYLKQ--YKHNPV 78 (504)
Q Consensus 42 C~Lsl~pl~~Pv-~~~~G~lf~k~~Il~~L~~--~~~~Pv 78 (504)
|+||++++.+|+ ..+.||.|+..+|..|++. .-.+|+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence 899999999998 8999999999999999994 334553
No 58
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.51 E-value=0.0033 Score=44.60 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=31.1
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCC
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLT 146 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~ 146 (504)
|||+...+.+ -+++.+|||+|+++++++.... +.+||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999888887 4568999999999999998754 4689987
No 59
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.51 E-value=0.0017 Score=47.47 Aligned_cols=44 Identities=18% Similarity=0.448 Sum_probs=36.1
Q ss_pred eeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCc
Q psy3664 102 HCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDE 148 (504)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~ 148 (504)
+|+++++.+++ .+...+-+|||+|+.++++.+. .....||+|.+
T Consensus 1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 59999999943 3446789999999999999998 45668999964
No 60
>KOG3039|consensus
Probab=96.46 E-value=0.003 Score=62.07 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=49.2
Q ss_pred CccccCCCCCCCCc----eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEe
Q psy3664 39 FDHCCVSLQPYEHP----YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 39 f~~C~Lsl~pl~~P----v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (504)
-+.||+|...|.+- |+-++|+||+++|+..+|++-+.||||++|++-+|||.|.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence 46799999998874 5578999999999999999999999999999999999994
No 61
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.11 E-value=0.0045 Score=44.96 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=34.1
Q ss_pred eeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCC
Q psy3664 102 HCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLT 146 (504)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~ 146 (504)
.|||+...|.....++.+. |||+|.++++.+.... +..||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~--~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR--NNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH--SSB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh--CCcCCcc
Confidence 3999999998777777665 9999999999998754 3489988
No 62
>KOG0882|consensus
Probab=96.06 E-value=0.0066 Score=64.42 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=105.2
Q ss_pred eEEEeeeCce----eEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCC--CCCCCCcccc
Q psy3664 339 SRLKTVTNET----RDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSK--LSPMKHETFW 411 (504)
Q Consensus 339 V~l~~~T~~G----~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~--~~g~gg~s~~ 411 (504)
+.+ .|..| .|.|+++.+-.|.-++-|..+|+.+|+++.+ |.||... ++|.||.. .+..|-.-+|
T Consensus 101 a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH-------~sPV~~i~y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 101 AEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH-------FSPVKKIRYNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred eEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc-------cCceEEEEeeccccceeeccccceeEee
Confidence 566 89999 8999999999999999999999999999999 9999999 99999975 2333445567
Q ss_pred cCccccccccchhhhccccccCCCCCccccC-CCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEE
Q psy3664 412 THSRENTNQLKPKLKRRSKQTHSMQPTILKK-NTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKM 490 (504)
Q Consensus 412 g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~d-e~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~V 490 (504)
...++ .-|++ +....++|. .-++.....-....+-+|+++-...+.|+.+..|||+|
T Consensus 172 s~e~~---------------------~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 172 SAEGP---------------------FQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cCCCc---------------------ccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 55411 11333 344678885 66666665433444568999888889999999999999
Q ss_pred EccHHHHHHHhhC
Q psy3664 491 VGGMDTLSAIEKV 503 (504)
Q Consensus 491 v~GmdvL~kI~~~ 503 (504)
..|-++++.|+.+
T Consensus 230 ~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 230 FKTGKLVQEIDEV 242 (558)
T ss_pred eccchhhhhhhcc
Confidence 9999999998765
No 63
>KOG0317|consensus
Probab=96.04 E-value=0.0048 Score=62.10 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEec
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
.+.+.|-+|.....+- .--||||+|||+||-+-..+.. .||+|-++|...+||-|+
T Consensus 237 ~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKA--ECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHcccc--CCCcccccCCCcceeeec
Confidence 4668899997777544 3578999999999999764322 599999999999999886
No 64
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.01 E-value=0.0081 Score=43.94 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=21.9
Q ss_pred ccCCCCCCCC----ceecCCCcEEeHHHHHHHHHhcC
Q psy3664 42 CCVSLQPYEH----PYCDKDGNIFELEALMGYLKQYK 74 (504)
Q Consensus 42 C~Lsl~pl~~----Pv~~~~G~lf~k~~Il~~L~~~~ 74 (504)
|+||.+ +.+ |++-+.||+|+++||..+++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~ 36 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD 36 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC
Confidence 899999 888 98888999999999999998653
No 65
>KOG4642|consensus
Probab=95.98 E-value=0.0019 Score=63.87 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=49.9
Q ss_pred cCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCC-CCCCCCcCCCCCcee
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKH-NPVTGKPLDVKSLIK 90 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~-~Pvtg~~l~~kdLi~ 90 (504)
..+-||.|+++.+++||.++.|..|++..|.++|..-|. +|+|+.+|..-+||+
T Consensus 209 pd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ip 263 (284)
T KOG4642|consen 209 PDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIP 263 (284)
T ss_pred cchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhcc
Confidence 678899999999999999999999999999999988764 999999999888876
No 66
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.94 E-value=0.009 Score=42.18 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=34.7
Q ss_pred cccCCCCCCCCcee-cCCCcEEeHHHHHHHHHh-cCCCCCCCCc
Q psy3664 41 HCCVSLQPYEHPYC-DKDGNIFELEALMGYLKQ-YKHNPVTGKP 82 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~-~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~ 82 (504)
.|+||++.+.+|+. .+.||.|+..++..|+.. ...+|+.+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 38999999988855 448999999999999997 6678876654
No 67
>KOG0978|consensus
Probab=95.90 E-value=0.0029 Score=70.96 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=48.9
Q ss_pred ccccCCCCCCCCceecCCCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCceeEee
Q psy3664 40 DHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~l~f 93 (504)
=.|++|..-+++-|++.+||+||.+||-..+.. +.+||.|+.+....|+.+|++
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 359999999999999999999999999999965 468999999999999999863
No 68
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.80 E-value=0.0053 Score=65.22 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCe
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~Di 155 (504)
+..+.||||...|.+. ++-+|||+||..|+...... ...||+|..++...++
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccccC
Confidence 4568999999999765 36799999999999987633 3479999999876543
No 69
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.59 E-value=0.013 Score=39.82 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=32.2
Q ss_pred ccCCCCCCCCceecCCCcEEeHHHHHHHHH-hcCCCCC
Q psy3664 42 CCVSLQPYEHPYCDKDGNIFELEALMGYLK-QYKHNPV 78 (504)
Q Consensus 42 C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~-~~~~~Pv 78 (504)
|+||++...+|+..+.||+|+..+|..|+. ....+|+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 789999989999999999999999999998 4455664
No 70
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.55 E-value=0.015 Score=43.44 Aligned_cols=46 Identities=17% Similarity=0.394 Sum_probs=36.4
Q ss_pred ceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
+..|+|++..+.+ +++.+|||+ |+.+++.++.. ...+||+|..+++
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 3579999887665 578899999 99999999974 4558999998875
No 71
>KOG2817|consensus
Probab=95.54 E-value=0.0061 Score=63.83 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=64.1
Q ss_pred ccccCCCCCCCCc--eecCCCcEEeHHHHHHHHHh--------cCCCCCCCC-cCCCCCceeEeeeeCCCCceeecccee
Q psy3664 40 DHCCVSLQPYEHP--YCDKDGNIFELEALMGYLKQ--------YKHNPVTGK-PLDVKSLIKLNFHKNAKGEYHCPVLYK 108 (504)
Q Consensus 40 ~~C~Lsl~pl~~P--v~~~~G~lf~k~~Il~~L~~--------~~~~Pvtg~-~l~~kdLi~l~f~~n~~~~~~CPvt~k 108 (504)
.+|++-+.|++-| |+-..|.+ .++.|.+ ++.+--.++ |+.++==-..+|+. -|+|||++.
T Consensus 272 ~ycallg~s~eSPL~v~v~aG~~-----Alp~Llk~~~v~~~~~~~W~~~deLPveIeL~~~~~fHS----vF~CPVlKe 342 (394)
T KOG2817|consen 272 EYCALLGISVESPLSVLVNAGCI-----ALPQLLKYKSVMELKHGEWNTKDELPVEIELGKEYHFHS----VFICPVLKE 342 (394)
T ss_pred HHHHHcCCCccCcHHHHHHhhHH-----HHHHHHHHHHHHHHhccCccccccCccceeccccccccc----eeecccchh
Confidence 4689999999988 54445632 2333322 221111111 22221111224554 499999977
Q ss_pred eecCceeEEEEccccceecHHHHHHHhhccC-CcccCCCCcCCCCCCeeE
Q psy3664 109 VFSKHSHLVAIETTGNVYSFEAVDQLNIKTK-SFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 109 ~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k-~~~c~v~~~~f~~~DiI~ 157 (504)
.-++...=+ --.||||+|.+|+.+|..... .++||-|-..-.-.|.+.
T Consensus 343 qtsdeNPPm-~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kq 391 (394)
T KOG2817|consen 343 QTSDENPPM-MLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQ 391 (394)
T ss_pred hccCCCCCe-eeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhccc
Confidence 766644333 345999999999999985322 389999987766655543
No 72
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.32 E-value=0.024 Score=40.25 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=34.3
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCC
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLT 146 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~ 146 (504)
|||+...+.... .+.+|||.|+..++.++.......+||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888887653 68999999999999998865567789887
No 73
>KOG1813|consensus
Probab=94.98 E-value=0.014 Score=58.90 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=49.9
Q ss_pred eEeHHhhhhhcCCCCCCCCCCCccccCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcC
Q psy3664 12 YLTYTEWTTLYGGKKAGPEKSDFKRLPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPL 83 (504)
Q Consensus 12 ~iT~~E~~~~~G~~k~~~~~~~~~~lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l 83 (504)
|--+-||-..-+.++...+.... +||. |-||.+++.+||++.+||.||..|.+..+++...|+|+++..
T Consensus 217 Wqi~~e~d~~ke~~~~~~~D~~~--~Pf~-c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 217 WQIEFEWDSAKEKKRVKIEDIEL--LPFK-CFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ceeehhhhccccccceecCCccc--CCcc-ccccccccccchhhcCCceeehhhhccccccCCcceeccccc
Confidence 33445555543333332222222 5664 789999999999999999999999999999988999887643
No 74
>KOG2164|consensus
Probab=94.95 E-value=0.01 Score=63.93 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=47.6
Q ss_pred cCCCCCceeEeeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc---cCCcccCCCCcCCCCCCeeEe
Q psy3664 82 PLDVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK---TKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 82 ~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~---~k~~~c~v~~~~f~~~DiI~l 158 (504)
++..+++..+.... .+.||||.-...- -++--||||||..||=++-.- ....+||+|...+..+|+-++
T Consensus 172 p~~~e~i~qv~~~t----~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 172 PVDWEDIFQVYGST----DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred ccchHHhhhhhcCc----CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 44445555554433 5889999876652 133449999999999876532 233579999999998887666
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.93 E-value=0.033 Score=56.19 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=40.0
Q ss_pred CccccCCCCCCCC--c-e-ecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeee
Q psy3664 39 FDHCCVSLQPYEH--P-Y-CDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFH 94 (504)
Q Consensus 39 f~~C~Lsl~pl~~--P-v-~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~ 94 (504)
-.+|||+...|.. + | +-++|+||+.++|-+. +..+.||++|.+..-.|||+|+-.
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEEecCC
Confidence 4489999999963 4 3 3688999999999887 234567777777666666666443
No 76
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.82 E-value=0.039 Score=44.87 Aligned_cols=43 Identities=28% Similarity=0.555 Sum_probs=34.0
Q ss_pred CCccccCCCCCCCC------------c-eecCCCcEEeHHHHHHHHHhcCCCCCCC
Q psy3664 38 PFDHCCVSLQPYEH------------P-YCDKDGNIFELEALMGYLKQYKHNPVTG 80 (504)
Q Consensus 38 pf~~C~Lsl~pl~~------------P-v~~~~G~lf~k~~Il~~L~~~~~~Pvtg 80 (504)
.-+.|+||+.+|.+ | +..+.||.|-..||.+||+....||+.+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34569999999943 3 3357899999999999999999999863
No 77
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.77 E-value=0.039 Score=40.04 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=28.8
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhccCC--cccCCC
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKS--FKDLLT 146 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~--~~c~v~ 146 (504)
|||+...|.+- +.-+|||+|+..+|.++...... +.||+|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999886 34589999999999999865433 568876
No 78
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.58 E-value=0.018 Score=57.96 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=40.5
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCc
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKP 82 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~ 82 (504)
...|-||..-++-|+.|++||.||.-||-.||..+.-||++..+
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCcccccc
Confidence 34599999999999999999999999999999999999998764
No 79
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.43 E-value=0.038 Score=38.88 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=33.2
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
|||+...+. ..+.+.+|||+|...++++.... ...+||+|...
T Consensus 2 C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhhh---CceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 888888873 34556779999999999987643 45689999765
No 80
>KOG0826|consensus
Probab=94.15 E-value=0.016 Score=59.40 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=42.3
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
.=.||||.|.--+. .++..+|-||||.|+-.... +..+|||++.|-.-+++|-|
T Consensus 300 ~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v~~l~rl 353 (357)
T KOG0826|consen 300 REVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASVDHLIRL 353 (357)
T ss_pred cccChhHHhccCCC---ceEEecceEEeHHHHHHHHH--hcCCCCccCCcchHHHHHHH
Confidence 35799997665554 26777999999999999775 34589999999988777754
No 81
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.04 E-value=0.027 Score=57.33 Aligned_cols=62 Identities=31% Similarity=0.416 Sum_probs=45.7
Q ss_pred eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhcc-CCcccCCCCcCCCCCCeeEe
Q psy3664 92 NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKT-KSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 92 ~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~-k~~~c~v~~~~f~~~DiI~l 158 (504)
||+.. |+|||++..-++-..=| .-.||||++.+++..|.... -.++||-|-+.-.-.|+|-+
T Consensus 332 hfHs~----FiCPVlKe~~t~ENpP~-ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rv 394 (396)
T COG5109 332 HFHSL----FICPVLKELCTDENPPV-MLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRV 394 (396)
T ss_pred cccce----eeccccHhhhcccCCCe-eeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcc
Confidence 55554 99999977777654444 55799999999999998432 24899999877666666543
No 82
>KOG2979|consensus
Probab=93.75 E-value=0.026 Score=56.16 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=30.2
Q ss_pred CccccCCCCCCCCcee-cCCCcEEeHHHHHHHHHhc
Q psy3664 39 FDHCCVSLQPYEHPYC-DKDGNIFELEALMGYLKQY 73 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~-~~~G~lf~k~~Il~~L~~~ 73 (504)
-+.|||+.+|..+||+ ..+||+|++..|+++|-.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~ 211 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE 211 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC
Confidence 3469999999999966 6679999999999999763
No 83
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.73 E-value=0.05 Score=39.61 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=32.3
Q ss_pred cccCCCCCC---CCceecCCCcEEeHHHHHHHHHhcCCCCCCC
Q psy3664 41 HCCVSLQPY---EHPYCDKDGNIFELEALMGYLKQYKHNPVTG 80 (504)
Q Consensus 41 ~C~Lsl~pl---~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg 80 (504)
+|++|.+++ ..|+++..||+|+..+|.........||+.+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~ 43 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICR 43 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCC
Confidence 488888888 3468899999999999999885556677654
No 84
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.038 Score=55.13 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=44.9
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEec
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
.+.|-|++|..+...- .-.+||||||+.||-..--+.+.-.||+|-.+...++||.|.
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viilr 270 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIILR 270 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchhhheec
Confidence 3578999998776653 567899999999998843344555699999988888887663
No 85
>KOG0287|consensus
Probab=93.44 E-value=0.024 Score=58.25 Aligned_cols=49 Identities=12% Similarity=0.199 Sum_probs=43.2
Q ss_pred ccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCc
Q psy3664 40 DHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdL 88 (504)
-.|-||.+-|.-||++++||.||--||-.||..+..||.+--+..-.+|
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 4599999999999999999999999999999999999988666554444
No 86
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=93.19 E-value=0.56 Score=50.93 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=69.5
Q ss_pred hhcCCCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCC-CccccccceeEEEeeCC-cccccCCCCCCCCCcc
Q psy3664 332 EQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFN-AAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHET 409 (504)
Q Consensus 332 ~~~~~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~-g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s 409 (504)
+-++.-.|.+...-..--|.|+||.|.||+||+.|.++.---... |. ..+|=..++ ++.-|++.
T Consensus 359 dIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~------L~v~F~~~d~~mFk~~~~-------- 424 (503)
T TIGR03268 359 DVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGR------LPVHFAFKEMIMFKGNKE-------- 424 (503)
T ss_pred HHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhcCCcccccce------eEEEEEeCCeeEeccCch--------
Confidence 333444455533444557999999999999999999876432211 11 236667777 22233322
Q ss_pred cccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEc------CCCC-CCCC
Q psy3664 410 FWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITY------RSCN-HLDG 482 (504)
Q Consensus 410 ~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl------~~~~-~LD~ 482 (504)
+++. +-.|+.|.-. ...|.|+|.|......| -.=|-| ++.. .+++
T Consensus 425 -~~k~-------------------------LiPEN~P~~~-V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g 476 (503)
T TIGR03268 425 -LAKG-------------------------LIPENTPEDK-VEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG 476 (503)
T ss_pred -hccc-------------------------cCCCCCCCCc-cccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC
Confidence 1111 2223323322 25888888875311111 011222 2222 2333
Q ss_pred CCcEEEEEEccHHHHHHHhh
Q psy3664 483 KHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 483 k~tvFG~Vv~GmdvL~kI~~ 502 (504)
--+.|+|+++|+.|.++..
T Consensus 477 -TNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 477 -TNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred -cceEEEecCChhHhccccc
Confidence 3478999999999988754
No 87
>PHA02929 N1R/p28-like protein; Provisional
Probab=93.07 E-value=0.066 Score=53.32 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=38.5
Q ss_pred ceeeccceeeecCce----eEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 100 EYHCPVLYKVFSKHS----HLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t----~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
...||||...+.+.. .+.++.+|||+|+.+||.+-.. ..-.||+|-.+|.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 467999999876532 2456778999999999998753 3347999988775
No 88
>PHA02926 zinc finger-like protein; Provisional
Probab=92.53 E-value=0.09 Score=51.45 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=28.9
Q ss_pred CccccCCCCCCCC---------ceecCCCcEEeHHHHHHHHHhc
Q psy3664 39 FDHCCVSLQPYEH---------PYCDKDGNIFELEALMGYLKQY 73 (504)
Q Consensus 39 f~~C~Lsl~pl~~---------Pv~~~~G~lf~k~~Il~~L~~~ 73 (504)
-.-|+||++..-+ ++..++||.||..||..|-...
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r 213 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTR 213 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhc
Confidence 4669999987532 4778999999999999999854
No 89
>KOG0823|consensus
Probab=92.26 E-value=0.19 Score=49.35 Aligned_cols=59 Identities=10% Similarity=0.254 Sum_probs=46.6
Q ss_pred CCCCceeeccceeeecCceeEEEEccccceecHHHHHHHh-hccCCcccCCCCcCCCCCCeeEe
Q psy3664 96 NAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLN-IKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~-~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
++.+.|-|-||...--+- ++--|||.|||-||-+.- .....-.||||.-..+.+.+|.|
T Consensus 43 ~~~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 557789999997655543 567799999999998743 33344468999999999999998
No 90
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.23 E-value=0.065 Score=51.32 Aligned_cols=45 Identities=24% Similarity=0.415 Sum_probs=40.1
Q ss_pred cCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCc
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKP 82 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~ 82 (504)
.|| -|-||..-++.||++.+||.||-.|.+.-.++...|-++|..
T Consensus 195 IPF-~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 195 IPF-LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred Cce-eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 455 588999999999999999999999999999888888888764
No 91
>KOG2879|consensus
Probab=91.75 E-value=0.12 Score=51.94 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=38.5
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
..-.||+|++-=+.-+ .+-+|||+|||-|+..-..-+-.+.||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~---~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPH---VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCe---eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4467999988766542 3568999999999988665455678999998654
No 92
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=91.39 E-value=0.053 Score=42.96 Aligned_cols=47 Identities=17% Similarity=0.396 Sum_probs=25.6
Q ss_pred cccCCCCCCCCcee-cCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCce
Q psy3664 41 HCCVSLQPYEHPYC-DKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLI 89 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~-~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi 89 (504)
.|+.|..-|+.||+ ....|+||..||-+.+.. .||+...|.-.+|+.
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS--
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHH
Confidence 59999999999987 677999999999886654 499999998888863
No 93
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.28 E-value=0.18 Score=52.00 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=37.1
Q ss_pred ccccCCCCC-CCCc----eecCCCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCceeE
Q psy3664 40 DHCCVSLQP-YEHP----YCDKDGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 40 ~~C~Lsl~p-l~~P----v~~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~l 91 (504)
..||+|..- ..+| .+.++||.||..||...+.. .+.||+++.++...++.+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 469999884 2244 33578999999999997643 4568888777777766544
No 94
>PRK00969 hypothetical protein; Provisional
Probab=91.19 E-value=0.47 Score=51.65 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=35.2
Q ss_pred CCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHHHH
Q psy3664 452 GRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSA 499 (504)
Q Consensus 452 ~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL~k 499 (504)
.+|+|.+-|.|.+.. ..||.-.+.+. .-.|+|+|+|+.|||+++-
T Consensus 259 ~~GtVTVRt~G~g~G--~vYIyredr~s-s~sHtvVG~V~~GiELi~~ 303 (508)
T PRK00969 259 RRGTVTVRTAGVGVG--KVYIYREDRPS-SLSHTVVGRVTHGIELIDF 303 (508)
T ss_pred ccceEEEEeeccCce--eEEEECCCCCC-CccceeEEEEecceeeeec
Confidence 699999999875433 57887766542 3469999999999998864
No 95
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=90.83 E-value=0.15 Score=34.35 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=27.6
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCC
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLT 146 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~ 146 (504)
|||+..... ...+.+|||+|.+.++++... ....+||+|
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 677766632 234668999999999998764 244568876
No 96
>KOG2177|consensus
Probab=90.68 E-value=0.071 Score=52.34 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=31.2
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHH
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLK 71 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~ 71 (504)
..-.|+||++.|.+|++.++||.||..||-.++.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC
Confidence 3557999999999999999999999999999988
No 97
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=90.36 E-value=0.76 Score=42.49 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=20.6
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHh
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKV 370 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~ 370 (504)
....-.++.+|+.|.||+||+.|.++.
T Consensus 4 ~~~g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 4 TKRGVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TTTTEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred ecCCeEEEEEEcccCChHHHHHHHHhC
Confidence 334446788999999999999999976
No 98
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.31 E-value=0.13 Score=39.56 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=27.8
Q ss_pred EEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCe
Q psy3664 118 AIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 118 ~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~Di 155 (504)
.+.+|||+++..++.--.-. -||+|+.+|...|+
T Consensus 21 ~~~pCgH~I~~~~f~~~rYn----gCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERYN----GCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccceeeccccChhhcc----CCCCCCCcccCCCC
Confidence 46899999999998754422 69999999998875
No 99
>PRK00969 hypothetical protein; Provisional
Probab=89.93 E-value=2.1 Score=46.82 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=36.0
Q ss_pred CCcEEEEecCCCCCCCccEEEEcCCCCCCCC--CCcEEEEEEccHHHHHHHhh
Q psy3664 452 GRGVLSMANSGPNTNTSQFFITYRSCNHLDG--KHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 452 ~rG~lsmansgpns~~SQFfItl~~~~~LD~--k~tvFG~Vv~GmdvL~kI~~ 502 (504)
.++-|.+.-+|-+...+.+.|...+....-| .--+||+||.|..+|+++..
T Consensus 115 ~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 115 ERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred ecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 6888989888866666666666654221111 12799999999999998864
No 100
>KOG3800|consensus
Probab=89.33 E-value=0.25 Score=50.06 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred eeccce--eeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 102 HCPVLY--KVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 102 ~CPvt~--k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.||+|+ +-|+..-.+. |.+|||-+|++|++.+-. .+...||.|++...+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~-in~C~H~lCEsCvd~iF~-~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLM-INECGHRLCESCVDRIFS-LGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceee-eccccchHHHHHHHHHHh-cCCCCCCcccchhhhcccc
Confidence 489885 5566555544 669999999999999874 4667899999988877655
No 101
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=89.31 E-value=0.36 Score=40.48 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=42.4
Q ss_pred CccccCCcc-ccCCCCCCCC-c-eecCCCcEEeHHHHHHHHHh---cCCCCCCCCcCCCC
Q psy3664 33 DFKRLPFDH-CCVSLQPYEH-P-YCDKDGNIFELEALMGYLKQ---YKHNPVTGKPLDVK 86 (504)
Q Consensus 33 ~~~~lpf~~-C~Lsl~pl~~-P-v~~~~G~lf~k~~Il~~L~~---~~~~Pvtg~~l~~k 86 (504)
.+.|.+|+- |+-|.-|-.+ | |....||.|-.-||++||.. ++.||+.+++...+
T Consensus 25 gICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 25 GICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred eeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 356778874 7788888776 7 55668999999999999985 47899988876554
No 102
>KOG1002|consensus
Probab=88.88 E-value=0.15 Score=55.22 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=41.8
Q ss_pred cccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecC
Q psy3664 41 HCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSK 112 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (504)
-|.||..|.++++.+.+-|.||+-||-+|+...+. + ++ .-||+|.+.++=
T Consensus 538 ~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~--------------------~-~n-vtCP~C~i~Lsi 587 (791)
T KOG1002|consen 538 ECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFME--------------------N-NN-VTCPVCHIGLSI 587 (791)
T ss_pred eecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhc--------------------c-cC-CCCccccccccc
Confidence 49999999999999999999999999999987642 1 12 569999888873
No 103
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.87 E-value=0.38 Score=36.25 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=25.0
Q ss_pred eeeccceeeecCceeEEEEccccce--ecHHHHHHHhhccCCcccCCCCcC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNV--YSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V--~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
..||+++..+.-- |--+.|-|+ |..+.+=+++.....|+||+|++|
T Consensus 3 L~CPls~~~i~~P---~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP---VRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE---EEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC---ccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4699999888753 223446555 777777777777788999999875
No 104
>KOG0289|consensus
Probab=88.71 E-value=0.25 Score=52.55 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=47.5
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCCCC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNE 163 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp~~ 163 (504)
++|.|++++--.- |+-..+||||-.+-|++... .+.+||++++|++.+|||.|.-|.-
T Consensus 1 m~CaISgEvP~~P---VvS~~Sg~vfEkrLIEqyI~--e~G~DPIt~~pLs~eelV~Ik~~~~ 58 (506)
T KOG0289|consen 1 MVCAISGEVPEEP---VVSPVSGHVFEKRLIEQYIA--ETGKDPITNEPLSIEELVEIKVPAQ 58 (506)
T ss_pred CeecccCCCCCCc---cccccccchHHHHHHHHHHH--HcCCCCCCCCcCCHHHeeecccccc
Confidence 3688888776543 55677999999999999984 4568999999999999999976553
No 105
>PHA02926 zinc finger-like protein; Provisional
Probab=88.23 E-value=0.26 Score=48.29 Aligned_cols=53 Identities=11% Similarity=0.276 Sum_probs=39.7
Q ss_pred Cceeeccceeeec-----CceeEEEEccccceecHHHHHHHhhccC----CcccCCCCcCCC
Q psy3664 99 GEYHCPVLYKVFS-----KHSHLVAIETTGNVYSFEAVDQLNIKTK----SFKDLLTDEPFQ 151 (504)
Q Consensus 99 ~~~~CPvt~k~f~-----~~t~~v~i~~~G~V~s~~av~~l~~~~k----~~~c~v~~~~f~ 151 (504)
.+..|+||..... +...+-.+.+|+|+||..|+++-..... ...||+|-..|.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3467999986653 2345778999999999999999875311 235999998875
No 106
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=87.30 E-value=4.3 Score=44.31 Aligned_cols=52 Identities=12% Similarity=0.269 Sum_probs=38.6
Q ss_pred CCCcEEEEecCCCCCCCccEEEEcCCCC--C-CCCCCcEEEEEEccHHHHHHHhh
Q psy3664 451 TGRGVLSMANSGPNTNTSQFFITYRSCN--H-LDGKHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 451 ~~rG~lsmansgpns~~SQFfItl~~~~--~-LD~k~tvFG~Vv~GmdvL~kI~~ 502 (504)
..++-|.+.-+|-+...+.+.|...+.. + +...--+||+||.|..+|+++..
T Consensus 110 y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 110 YERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 3688899988886666677777766543 2 22245799999999999998854
No 107
>KOG2879|consensus
Probab=86.44 E-value=0.69 Score=46.65 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=36.8
Q ss_pred ccccCCCCCCCCc-eecCCCcEEeHHHHHHHHH--hcCCCCCCCCcCC
Q psy3664 40 DHCCVSLQPYEHP-YCDKDGNIFELEALMGYLK--QYKHNPVTGKPLD 84 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~--~~~~~Pvtg~~l~ 84 (504)
.-|++|.+|-..| +.-++||+||+-||..-+. ..=.||.+|++..
T Consensus 240 ~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 240 TECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4599999999999 5566999999999998875 3347998887544
No 108
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.72 E-value=0.41 Score=48.63 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=29.2
Q ss_pred ccccCCCCCCCCceecC-CCcEEeHHHHHHHHHhc
Q psy3664 40 DHCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQY 73 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~ 73 (504)
--|+||...+++|+=|+ +|+.||.+||-..|...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds 309 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS 309 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc
Confidence 45999999999998885 49999999998887643
No 109
>KOG0297|consensus
Probab=85.28 E-value=0.42 Score=51.12 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=45.0
Q ss_pred ccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCcee
Q psy3664 40 DHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~ 90 (504)
..|++|..++.+|+-+ ..||.||..||..|+..+..||+....+....+++
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 4699999999999884 89999999999999999999999877777666665
No 110
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=85.24 E-value=0.24 Score=39.36 Aligned_cols=49 Identities=8% Similarity=0.234 Sum_probs=24.0
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.-|++|.-.|..- |.+..|.|+|+..||...... .||||..|-..+|+-
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTTT----B-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcCC----CCCCcCChHHHHHHH
Confidence 3588887777654 668899999999999875422 599999999888864
No 111
>KOG2177|consensus
Probab=84.51 E-value=0.39 Score=47.10 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCc
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDE 148 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~ 148 (504)
..++.||||...|..- .+-+|||.||..|+..+.. ....||+|-.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 4578999999999876 6889999999999999884 5578999983
No 112
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=81.83 E-value=4.6 Score=42.84 Aligned_cols=23 Identities=0% Similarity=-0.116 Sum_probs=21.0
Q ss_pred eEEEEeecCCChhHHHHHHHHhh
Q psy3664 349 RDILDTFKREYKPTEAKVEEKVK 371 (504)
Q Consensus 349 ~I~IeL~~d~aP~t~~NF~~L~~ 371 (504)
-|.||||.|.||++++.|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 68999999999999999998764
No 113
>KOG0827|consensus
Probab=81.63 E-value=1.4 Score=46.41 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=49.1
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhc-cCCcccCCCCcCCCCCCeeEecCCCCcchhccccccccccc
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNFHHLKNN 178 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~~~~f~~~DiI~lqdp~~~~~~~~~~f~h~k~~ 178 (504)
.-.|.||-.-|-.....-.|.+|||||-..|+.+.-.- +.+..||+|-.+....-|+ |-..|+|+.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~-----------N~~~~d~vvEe 72 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA-----------NPSTVDHVVEE 72 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee-----------chhhhhhhhcc
Confidence 35799995444444456668999999999999986532 3334799997333322222 34568888876
Q ss_pred cccccHHH
Q psy3664 179 LRVLTDEE 186 (504)
Q Consensus 179 ~~~~~~~~ 186 (504)
--|.+.+.
T Consensus 73 ~~Vld~~~ 80 (465)
T KOG0827|consen 73 SVVLDWDV 80 (465)
T ss_pred chhhhHHH
Confidence 55555443
No 114
>KOG4628|consensus
Probab=81.39 E-value=0.94 Score=47.50 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=37.1
Q ss_pred ccccCCCCCCCC--c-eecCCCcEEeHHHHHHHHHhcCC-CCCCCC
Q psy3664 40 DHCCVSLQPYEH--P-YCDKDGNIFELEALMGYLKQYKH-NPVTGK 81 (504)
Q Consensus 40 ~~C~Lsl~pl~~--P-v~~~~G~lf~k~~Il~~L~~~~~-~Pvtg~ 81 (504)
+-|+||++-++. - .+-+++|.|=..||=+||..+++ ||++.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence 589999999884 3 56899999999999999999966 999987
No 115
>KOG4159|consensus
Probab=81.24 E-value=0.86 Score=48.75 Aligned_cols=45 Identities=31% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcC
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPL 83 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l 83 (504)
+|. |.+|...|..||.+++||.||..||..-+.....||.+.+++
T Consensus 84 ef~-c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 84 EFE-CCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDEL 128 (398)
T ss_pred hhh-hhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccc
Confidence 444 669999999999999999999999999777777788755544
No 116
>KOG0802|consensus
Probab=80.14 E-value=0.92 Score=50.56 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCccccCCCCCCCC-----ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCC
Q psy3664 38 PFDHCCVSLQPYEH-----PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKS 87 (504)
Q Consensus 38 pf~~C~Lsl~pl~~-----Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kd 87 (504)
--+.|+||.+.+.. |-.-++||+|.-.|+..|++....||++.-.+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 35679999999998 666788999999999999999999999876433333
No 117
>KOG1645|consensus
Probab=78.60 E-value=1.3 Score=46.97 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=45.0
Q ss_pred eeecccee--eecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEec
Q psy3664 101 YHCPVLYK--VFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 101 ~~CPvt~k--~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
-.||+|.. +|..++++| +-.|||.|...||+.---+...++||.|+.+-++.+|-.++
T Consensus 5 ~tcpiclds~~~~g~hr~v-sl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIV-SLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred ccCceeeeeeeecCceEEe-eecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 46999975 556677777 56699999999999855455557899999998888876554
No 118
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=78.52 E-value=0.81 Score=38.97 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=24.8
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHH
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVD 132 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~ 132 (504)
-.|+||++.|.+ ..+++-|||+||-+.|++
T Consensus 79 ~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 359999999987 456678999999988864
No 119
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=77.91 E-value=3.2 Score=44.00 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=34.3
Q ss_pred CCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHHHHH
Q psy3664 452 GRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAI 500 (504)
Q Consensus 452 ~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL~kI 500 (504)
.||+++.-|.|-++ -.-||.-.+.+. --.|.|.|+|++||++++--
T Consensus 258 erG~iTvRn~Gvge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a 303 (512)
T COG4070 258 ERGAITVRNVGVGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLA 303 (512)
T ss_pred hcceEEEEeeeccc--ceEEEEecCCCC-ccccceeeeeecceEEEEec
Confidence 59999999987433 257887665443 24699999999999987643
No 120
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=77.11 E-value=2.4 Score=44.58 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=35.9
Q ss_pred ccccCCCCCCCCc-------------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcC
Q psy3664 40 DHCCVSLQPYEHP-------------YCDKDGNIFELEALMGYLKQYKHNPVTGKPL 83 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-------------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l 83 (504)
+.|.||..-+-+| ==-++||++-.+|+-.|++.+.+||+++.|+
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4699998874433 2356799999999999999999999998774
No 121
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.62 E-value=2.3 Score=43.59 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=38.5
Q ss_pred CCcc-ccCCCCCCCC--c-eecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCC
Q psy3664 38 PFDH-CCVSLQPYEH--P-YCDKDGNIFELEALMGYLKQYK-HNPVTGKPLD 84 (504)
Q Consensus 38 pf~~-C~Lsl~pl~~--P-v~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~ 84 (504)
.+.+ |+||+.-+.. - ++.|+-|.|-.-||-.||..|. +||++..++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4455 9999988763 2 7799999999999999999664 7999987654
No 122
>KOG0396|consensus
Probab=76.03 E-value=0.77 Score=48.11 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=60.0
Q ss_pred CCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 75 HNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
.||++-+.+..-. -.|=|........+|-+++..+++. ..=.+.|.|.||...+++.++...+ ..||.+++-|...+
T Consensus 306 ~CpvC~~~f~~ia-~~LPfah~~~S~Lvc~isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~-i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 306 NCPVCCEAFKPIA-QALPFAHHAQSRLVCSISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDG-IGDPRTKKVFRYSE 382 (389)
T ss_pred CCCCcccccchhh-hcCCchhhhhhHHHhhccccccCCC-CCcccccCceeehhHHHHhhcccCC-CcCCCCCccccHHH
Confidence 5788877665443 3555677667789999999999876 4445789999999999999995433 67999988887655
Q ss_pred ee
Q psy3664 155 II 156 (504)
Q Consensus 155 iI 156 (504)
.+
T Consensus 383 l~ 384 (389)
T KOG0396|consen 383 LC 384 (389)
T ss_pred HH
Confidence 43
No 123
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=75.85 E-value=1.3 Score=43.76 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=32.9
Q ss_pred CccccCCCCCCCCcee-cCCCcEEeHHHHHHHHHhcC--CCCC
Q psy3664 39 FDHCCVSLQPYEHPYC-DKDGNIFELEALMGYLKQYK--HNPV 78 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~-~~~G~lf~k~~Il~~L~~~~--~~Pv 78 (504)
-+.|||+++|...|++ +.+.|.|+++.|..+|.-+. .||+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 4569999999999955 67799999999999998543 4663
No 124
>KOG2660|consensus
Probab=75.33 E-value=0.79 Score=47.32 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcCCCCCCC
Q psy3664 38 PFDHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYKHNPVTG 80 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~~~Pvtg 80 (504)
|.-.|.||..=|.|+ .++.+=|.||+.||+.||.....||.++
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~ 57 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCD 57 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 666799999999999 6688899999999999999887777664
No 125
>KOG0824|consensus
Probab=75.03 E-value=1.5 Score=44.93 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=63.1
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCC------ceeEeeeeCCCCceeeccceeeec
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKS------LIKLNFHKNAKGEYHCPVLYKVFS 111 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kd------Li~l~f~~n~~~~~~CPvt~k~f~ 111 (504)
-.-|+||++....||.-+++|.||..||-.-.+... .|+++..|+.-.= +..|+...-.+++ ++.+..+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~LK~n~p~~~~----~t~~~~~ 82 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYRLKPNTPEVKR----ITRSQAK 82 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhhhcCCCCCCCc----ccccHHh
Confidence 346999999999999999999999999988776554 5999988765332 2333322222222 1211111
Q ss_pred CceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 112 KHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 112 ~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
. ..+..+-||-+.+ .+.. ...++-.|.+|-..+.-.+
T Consensus 83 r----ag~n~nqnvp~~~-~dA~-~~~~~~~~~~~~g~l~vpt 119 (324)
T KOG0824|consen 83 R----AGVNGNQNVPYMK-EDAG-FQQDHDICYICYGKLTVPT 119 (324)
T ss_pred h----hhhhccCCcchhh-hhcc-ccCCccceeeeeeeEEecc
Confidence 1 2355666776666 3322 2333345666655554433
No 126
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=73.70 E-value=2 Score=35.52 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=34.7
Q ss_pred CCccccCCCCCCCCc--ee--------------cCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 38 PFDHCCVSLQPYEHP--YC--------------DKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P--v~--------------~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
|-+.|+||-.++.++ -| -.+-|.|-.-||..||..++.||+..++--
T Consensus 19 ~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 19 PIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 456677777766654 12 224688999999999999999999877543
No 127
>KOG0287|consensus
Probab=72.93 E-value=1.4 Score=45.66 Aligned_cols=50 Identities=6% Similarity=0.125 Sum_probs=40.2
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCe
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~Di 155 (504)
-..|-||+.-|+ |-+|-||||-||.=||..+-. ....||.|-.+|++.|+
T Consensus 23 lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhc----CceeccccchHHHHHHHHHhc--cCCCCCceecccchhhh
Confidence 367999988776 457889999999999998663 23369999999998763
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=72.57 E-value=2.6 Score=32.43 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=39.7
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCC--CCcCCCC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLL--TDEPFQR 152 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v--~~~~f~~ 152 (504)
-.|++|++.|.+.-.||+=..||-+|-.+|.+... .|.. |+.+|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g------~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG------GCINYSCGTGFEW 53 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC------ceEeccCCCCccc
Confidence 57999999999888999999999999999998766 6877 8877753
No 129
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=71.87 E-value=4.9 Score=32.51 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=30.9
Q ss_pred eccceeeecCc---------eeEEEEccccceecHHHHHHHhhccCCcccCCC
Q psy3664 103 CPVLYKVFSKH---------SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLT 146 (504)
Q Consensus 103 CPvt~k~f~~~---------t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~ 146 (504)
|+||...|.+. .-.+++.+|||+|-..||.+--.. +..||+|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~C 72 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLC 72 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCC
Confidence 99999999332 345677889999999999987633 3379998
No 130
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=69.99 E-value=3.3 Score=28.33 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=8.8
Q ss_pred CCcccCCCCcC
Q psy3664 139 KSFKDLLTDEP 149 (504)
Q Consensus 139 k~~~c~v~~~~ 149 (504)
..|+||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 57899999864
No 131
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.74 E-value=4.3 Score=41.67 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=39.7
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
+..-|.||...|.+.-+ +.+-||-|+|--.|+++-...-+ .+||+|..+.
T Consensus 322 ~GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~-~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYS-NKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhc-ccCCccCCCC
Confidence 34679999999987777 55779999999999998664333 3799998765
No 132
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=69.21 E-value=2.1 Score=41.29 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=33.8
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
.|.|-||.+.+-.- ++..|||-||..|.-.-- .+.-.|.+|++.-
T Consensus 196 PF~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y--~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP----VVTECGHSFCSLCAIRKY--QKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch----hhhhcchhHHHHHHHHHh--ccCCcceecchhh
Confidence 49999999998754 457899999998865433 2344799999653
No 133
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=69.21 E-value=8 Score=29.06 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=25.1
Q ss_pred cccCCCCCCCCcee---cCCCcEEeHHHHHHHHHhcC--CCCCCCC
Q psy3664 41 HCCVSLQPYEHPYC---DKDGNIFELEALMGYLKQYK--HNPVTGK 81 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~---~~~G~lf~k~~Il~~L~~~~--~~Pvtg~ 81 (504)
.||||.+.++.||= |.--.-||.+..+.+-...+ .||+.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 59999999999965 33344699999999988664 3555544
No 134
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=68.87 E-value=6.6 Score=34.57 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=30.7
Q ss_pred cccCCCCCCCCceec--CC----CcEEeHHHHHHHHHhcCCCCCCCCcCCCCCcee
Q psy3664 41 HCCVSLQPYEHPYCD--KD----GNIFELEALMGYLKQYKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~--~~----G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~ 90 (504)
.|||+|..-++-|.- .. =.|||++++.+-+.....+|++++|++..=||.
T Consensus 42 ~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 42 TCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp -BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred CCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 499999987765431 11 369999999999999999999999999887764
No 135
>KOG4739|consensus
Probab=67.23 E-value=2.1 Score=42.54 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=33.0
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
.||-.|+.--. .+-.+|-.|+||||..|++.--.. .|++|.++
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~~~----~C~lCkk~ 46 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKASSPD----VCPLCKKS 46 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccCCcc----ccccccce
Confidence 46888876554 444568999999999998865422 79999988
No 136
>KOG0883|consensus
Probab=66.82 E-value=3.7 Score=43.46 Aligned_cols=76 Identities=20% Similarity=0.389 Sum_probs=53.5
Q ss_pred hhhhhcCCCC---CCCCCCCccccCC-------ccccCCCCCCCC---cee-cCCCcEEeHHHHHHHH--HhcCCCCCCC
Q psy3664 17 EWTTLYGGKK---AGPEKSDFKRLPF-------DHCCVSLQPYEH---PYC-DKDGNIFELEALMGYL--KQYKHNPVTG 80 (504)
Q Consensus 17 E~~~~~G~~k---~~~~~~~~~~lpf-------~~C~Lsl~pl~~---Pv~-~~~G~lf~k~~Il~~L--~~~~~~Pvtg 80 (504)
-|.+.||..- +.+...++-.|-| +|||....+|.+ -|. -..|++|||++|-+-= .++.++-+|.
T Consensus 69 p~lkk~g~nP~tG~kl~~~dLIkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltd 148 (518)
T KOG0883|consen 69 PWLKKHGTNPITGQKLDGKDLIKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTD 148 (518)
T ss_pred HHHHHcCCCCCCCCccccccceeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhcc
Confidence 4777787432 2233333434444 589999999875 344 4469999999997754 3456788999
Q ss_pred CcCCCCCceeEe
Q psy3664 81 KPLDVKSLIKLN 92 (504)
Q Consensus 81 ~~l~~kdLi~l~ 92 (504)
+|.+..|||.|.
T Consensus 149 epFtR~DiItiQ 160 (518)
T KOG0883|consen 149 EPFTRADIITIQ 160 (518)
T ss_pred CCcchhceeeec
Confidence 999999999983
No 137
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.74 E-value=2.9 Score=42.66 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=36.1
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.-||.|+.-+.+-.+- .-||+-||.+||+..-. ...++|++|. ++||+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~-dsDf~CpnC~----rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALL-DSDFKCPNCS----RKDVL 322 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhh-hccccCCCcc----cccch
Confidence 6799999888764222 44999999999997553 4668999996 45654
No 138
>KOG0396|consensus
Probab=63.92 E-value=3.4 Score=43.45 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=40.4
Q ss_pred ccCCcc-------ccCCCCCCCC---ceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCCceeE
Q psy3664 36 RLPFDH-------CCVSLQPYEH---PYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 36 ~lpf~~-------C~Lsl~pl~~---Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kdLi~l 91 (504)
+|||.+ |.||+.-+.+ |++-|.|++|-..+|+.|=...| .||+++..+.-.+++++
T Consensus 320 ~LPfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kv 386 (389)
T KOG0396|consen 320 ALPFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKV 386 (389)
T ss_pred cCCchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHH
Confidence 478877 6667666653 68888999999999888877663 57777776665555544
No 139
>KOG2979|consensus
Probab=63.51 E-value=3.5 Score=41.41 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=40.9
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQD 160 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqd 160 (504)
..||+|++.+-+- +.-+.|||||-...+.++--.....+||+-+-+ +...+|+
T Consensus 177 ~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~----~~~~~~~ 229 (262)
T KOG2979|consen 177 NRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE----NPYYIQP 229 (262)
T ss_pred ccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC----ccccccc
Confidence 5799998877654 557889999999999998866667789997655 4555553
No 140
>KOG2462|consensus
Probab=62.60 E-value=6.5 Score=39.90 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=39.7
Q ss_pred CCceeeccceeeecCcee---------------EEEEcccccee-cHHHHHHHhhccC-CcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSH---------------LVAIETTGNVY-SFEAVDQLNIKTK-SFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~---------------~v~i~~~G~V~-s~~av~~l~~~~k-~~~c~v~~~~f~~~ 153 (504)
.+.|+||-|+|.....+. ..--..||-|| +.-|++-.....+ ..+|.+||+.|.|-
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRP 200 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRP 200 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccch
Confidence 578999999998877651 22245688888 6666666554433 46799999999874
No 141
>PHA02768 hypothetical protein; Provisional
Probab=62.39 E-value=9.2 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=29.7
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC-CCeeEec
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR-KNIITLQ 159 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~-~DiI~lq 159 (504)
.|.||.|+|.|+..+++ ..-+.+-.++.+|..|++-|.. ...|.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L--------------~~H~r~H~k~~kc~~C~k~f~~~s~l~~~~ 51 (55)
T PHA02768 5 GYECPICGEIYIKRKSM--------------ITHLRKHNTNLKLSNCKRISLRTGEYIEIK 51 (55)
T ss_pred ccCcchhCCeeccHHHH--------------HHHHHhcCCcccCCcccceecccceeEEEe
Confidence 37899999999864322 1223333356789999998875 3455543
No 142
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=61.81 E-value=6.4 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
...|+||-|+..|+- .+|++ ..|.||+||.++...
T Consensus 115 ~~~Y~Cp~C~~rytf---------------~eA~~------~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 115 NMFFFCPNCHIRFTF---------------DEAME------YGFRCPQCGEMLEEY 149 (178)
T ss_pred CCEEECCCCCcEEeH---------------HHHhh------cCCcCCCCCCCCeec
Confidence 346999999988872 23432 468999999988763
No 143
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=61.47 E-value=6.9 Score=43.93 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=45.5
Q ss_pred cccCCCCCCCCceecC-CCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCcee
Q psy3664 41 HCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~ 90 (504)
--||...++++||.-+ .|.--|+.-|-.+|...+++|.++-||++.|+++
T Consensus 856 lDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtp 906 (929)
T COG5113 856 LDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTP 906 (929)
T ss_pred hCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCC
Confidence 3689999999998866 5999999999999999999999999999999965
No 144
>KOG0824|consensus
Probab=61.37 E-value=4.1 Score=41.76 Aligned_cols=47 Identities=6% Similarity=0.009 Sum_probs=35.7
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
-.|+||.-..+-- .+-.|+|+||+.||+-... .++..|.+|--||..
T Consensus 8 ~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~-ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCP----VNLYCFHKFCYICIKGSYK-NDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcC----ccccccchhhhhhhcchhh-cCCCCCceecCCCCc
Confidence 3588887666533 4678999999999998763 344459999999875
No 145
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=59.90 E-value=5.9 Score=37.02 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
+..|+||-|+..|+- .+|++ .+|.||+||.++...|
T Consensus 107 ~~~Y~Cp~c~~r~tf---------------~eA~~------~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 107 NMFFICPNMCVRFTF---------------NEAME------LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCeEECCCCCcEeeH---------------HHHHH------cCCcCCCCCCEeeecc
Confidence 346899999888872 34443 3689999998865443
No 146
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=59.88 E-value=3.6 Score=39.52 Aligned_cols=17 Identities=41% Similarity=0.739 Sum_probs=14.8
Q ss_pred ceeeccceeeecCceeE
Q psy3664 100 EYHCPVLYKVFSKHSHL 116 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~ 116 (504)
-|+||.|+|+|++++|-
T Consensus 87 IYICPFTGKVF~DNt~~ 103 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTHP 103 (238)
T ss_pred EEEcCCcCccccCCCCC
Confidence 49999999999998663
No 147
>KOG0825|consensus
Probab=59.03 E-value=2.3 Score=48.48 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=39.8
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
-.||+|-+.|.+. -+..-++|||.||..||.....-.. .||+|-..|.+-+
T Consensus 124 ~~CP~Ci~s~~Dq-L~~~~k~c~H~FC~~Ci~sWsR~aq--TCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQ-LEESEKHTAHYFCEECVGSWSRCAQ--TCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHH-hhccccccccccHHHHhhhhhhhcc--cCchhhhhhheee
Confidence 4599999988854 3445778999999999998774333 6999999997643
No 148
>KOG1703|consensus
Probab=58.84 E-value=7.5 Score=42.71 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=67.1
Q ss_pred ccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcC---CCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecCceeEE
Q psy3664 42 CCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYK---HNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLV 117 (504)
Q Consensus 42 C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~---~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v 117 (504)
|..|...+.+. ....+|++||.++..+|+.-.. ..|+.++.+... .-.|+.+ .|.|-.|.+.|.+. .
T Consensus 333 c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~~v~a~---~~~wH~~---cf~C~~C~~~~~~~---~ 403 (479)
T KOG1703|consen 333 CEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEEGVCAL---GRLWHPE---CFVCADCGKPLKNS---S 403 (479)
T ss_pred eccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHhHhhhc---cCeechh---ceeeecccCCCCCC---c
Confidence 55555555544 2466799999999999996543 355666655544 4456655 69999997777765 3
Q ss_pred EEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 118 AIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 118 ~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
+....|..||+.+..++... +|..|..++
T Consensus 404 ~~~~~~~pyce~~~~~~~~~----~~~~~~~p~ 432 (479)
T KOG1703|consen 404 FFESDGEPYCEDHYKKLFTT----KCDYCKKPV 432 (479)
T ss_pred ccccCCccchhhhHhhhccc----cchhccchh
Confidence 45678999999999998842 577777663
No 149
>KOG3113|consensus
Probab=58.49 E-value=11 Score=37.81 Aligned_cols=54 Identities=20% Similarity=0.104 Sum_probs=42.8
Q ss_pred ccccCCCCCCCCc----eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeee
Q psy3664 40 DHCCVSLQPYEHP----YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHK 95 (504)
Q Consensus 40 ~~C~Lsl~pl~~P----v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~ 95 (504)
..|||+.-+|..- +.-.+|+||...++-+. +-..|+++|.+....|+|.||-+.
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~ 169 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTE 169 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCCH
Confidence 4799999999875 33668999998887654 256799999999999999886554
No 150
>KOG2462|consensus
Probab=56.15 E-value=11 Score=38.40 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=58.3
Q ss_pred cCCCcEEeHHHHHH-HHHhcC---CCCCCCCcCCCCCceeEeeeeC-CCCceeeccceeeecCceeEEEEccccceecHH
Q psy3664 55 DKDGNIFELEALMG-YLKQYK---HNPVTGKPLDVKSLIKLNFHKN-AKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFE 129 (504)
Q Consensus 55 ~~~G~lf~k~~Il~-~L~~~~---~~Pvtg~~l~~kdLi~l~f~~n-~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~ 129 (504)
-.+|.+|=..-.|. +|+.++ .|+++|+..+.-=|+.=++-.. ++-.|.||.|.|.|.+.+..-
T Consensus 165 ~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLR------------ 232 (279)
T KOG2462|consen 165 KYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLR------------ 232 (279)
T ss_pred CCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHH------------
Confidence 33588887765554 456665 5999999888666666555443 355699999999999864322
Q ss_pred HHHHHhhccCCcccCCCCcCCCCC
Q psy3664 130 AVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 130 av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
|=-+--...|.++|..|++-|.+.
T Consensus 233 AHmQTHS~~K~~qC~~C~KsFsl~ 256 (279)
T KOG2462|consen 233 AHMQTHSDVKKHQCPRCGKSFALK 256 (279)
T ss_pred HHHHhhcCCccccCcchhhHHHHH
Confidence 211222235678899999988753
No 151
>KOG1002|consensus
Probab=56.00 E-value=5.3 Score=43.84 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc---cCCcccCCCCcCCCCCCeeEecCCCCcchhccccc
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK---TKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNF 172 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~---~k~~~c~v~~~~f~~~DiI~lqdp~~~~~~~~~~f 172 (504)
.++..|-+|..+--+. ....|-|+||.-|+++..+. ..+..||+|..+++.+ |-.| .+++..+..|
T Consensus 534 k~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD----lse~-alek~~l~~F 602 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID----LSEP-ALEKTDLKGF 602 (791)
T ss_pred cCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc----ccch-hhhhcchhhh
Confidence 4778999998776653 46789999999999887653 3458899999999876 2222 4455566666
No 152
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.80 E-value=9.4 Score=35.08 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
...|+||-|+..|+- .++..... ....+.||.|+.++...|
T Consensus 97 ~~~Y~Cp~C~~~y~~---------------~ea~~~~d-~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 97 NAYYKCPNCQSKYTF---------------LEANQLLD-MDGTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEEECcCCCCEeeH---------------HHHHHhcC-CCCcEECCCCCCEEEEcC
Confidence 456999977766651 23443333 344589999998876544
No 153
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=53.28 E-value=9.1 Score=39.12 Aligned_cols=47 Identities=11% Similarity=-0.028 Sum_probs=35.8
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
-..|-||.--|. |-++-+|||-||+=||+.--.. .--||+|-+++-+
T Consensus 25 ~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheee----cceecccccchhHHHHHHHhcC--CCCCccccccHHh
Confidence 356999976665 4578999999999999985422 2359999988764
No 154
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=53.21 E-value=4.1 Score=32.82 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=16.0
Q ss_pred cccCCCCCCC----Cc--eec--CCCcEEeHHHHHHHHHhc
Q psy3664 41 HCCVSLQPYE----HP--YCD--KDGNIFELEALMGYLKQY 73 (504)
Q Consensus 41 ~C~Lsl~pl~----~P--v~~--~~G~lf~k~~Il~~L~~~ 73 (504)
.|+||..-+. .| ||. ..|..|=..|+.+||+..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~ 44 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSL 44 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHH
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHc
Confidence 5888887643 25 554 569999999999999754
No 155
>KOG2042|consensus
Probab=52.36 E-value=12 Score=44.22 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=45.5
Q ss_pred ccCCCCCCCCceecC-CCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCcee
Q psy3664 42 CCVSLQPYEHPYCDK-DGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 42 C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~ 90 (504)
=||...++.+||+-| .|.+-|+..|..+|..-.++|+++.||+++++.+
T Consensus 873 DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~p 922 (943)
T KOG2042|consen 873 DPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSP 922 (943)
T ss_pred CccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCC
Confidence 478899999999988 7999999999999999999999999999999865
No 156
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=52.24 E-value=4.7 Score=30.09 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=18.7
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
+|+|++|+-+...... .+-..|-.-..+++| +.+|+||+|+.+
T Consensus 1 ky~C~~CgyvYd~~~G----d~~~~i~pGt~F~~L---p~~w~CP~C~a~ 43 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEKG----DPENGIPPGTPFEDL---PDDWVCPVCGAP 43 (47)
T ss_dssp EEEETTTSBEEETTTB----BGGGTB-TT--GGGS----TT-B-TTTSSB
T ss_pred CcCCCCCCEEEcCCcC----CcccCcCCCCCHHHC---CCCCcCcCCCCc
Confidence 3667776554443200 011122223334444 578999999865
No 157
>KOG1814|consensus
Probab=50.23 E-value=9.7 Score=40.70 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=37.7
Q ss_pred CCCCCceeEeeeeCC--------CCceeeccceeeecCceeEEEEccccceecHHHHHHH
Q psy3664 83 LDVKSLIKLNFHKNA--------KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQL 134 (504)
Q Consensus 83 l~~kdLi~l~f~~n~--------~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l 134 (504)
-++.||++..+..+. ..-|.|-||+.++.+...|+ .-||+||||..|++..
T Consensus 159 ~~~~sl~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~~c~~-~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 159 ESIDSLKKEILQFDEEATLEKFVNSLFDCCICFEEQMGQHCFK-FLPCSHVFCKSCLKDY 217 (445)
T ss_pred cChHHHHHHHHhhhHHHHHHHHHhhcccceeeehhhcCcceee-ecccchHHHHHHHHHH
Confidence 356666666544443 24599999999998765555 7789999999998763
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=49.57 E-value=9.2 Score=39.85 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=33.9
Q ss_pred CccccCCCCCCCC--c--eecCCCc---EEeHHHHHHHHHhcCCCCCCCCcCCCCCc
Q psy3664 39 FDHCCVSLQPYEH--P--YCDKDGN---IFELEALMGYLKQYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 39 f~~C~Lsl~pl~~--P--v~~~~G~---lf~k~~Il~~L~~~~~~Pvtg~~l~~kdL 88 (504)
-++||||.+|+.- - .-|++|+ -|||-.|-+-| .|+||.++....-..+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--ngrcpacrr~y~denv 68 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--NGRCPACRRKYDDENV 68 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc--cCCChHhhhhccccce
Confidence 3569999999873 2 3488898 47788887774 6889988765444433
No 159
>KOG1001|consensus
Probab=49.18 E-value=3.5 Score=47.19 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=45.9
Q ss_pred ccccCCCCCCCCceecCCCcEEeHHHHHHHHHhc--CCCCCCCCcCCCCCceeEeeeeC
Q psy3664 40 DHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQY--KHNPVTGKPLDVKSLIKLNFHKN 96 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~--~~~Pvtg~~l~~kdLi~l~f~~n 96 (504)
.-|.+|+. ...++++.+||.||.+|+.+.+... ..||++...+..++|+...+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~ 512 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPS 512 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccc
Confidence 67999999 8888999999999999999999543 36888888888888877655544
No 160
>KOG0311|consensus
Probab=48.50 E-value=2 Score=44.86 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=36.3
Q ss_pred cccCCCCCCCCceecC-CCcEEeHHHHHHHHHhc-CCCCCCCCcCC
Q psy3664 41 HCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQY-KHNPVTGKPLD 84 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~-~~~Pvtg~~l~ 84 (504)
.|+|||..++.-+.++ ++|-||.+||+..++.. ..||-+.+.+.
T Consensus 45 ~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 45 ICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred ccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 4999999999887766 59999999999999765 46998776544
No 161
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=47.89 E-value=3.8 Score=42.30 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=37.6
Q ss_pred Cceeecc--ceeeecCceeEEEEcccccee-------cHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 99 GEYHCPV--LYKVFSKHSHLVAIETTGNVY-------SFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 99 ~~~~CPv--t~k~f~~~t~~v~i~~~G~V~-------s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
-.|-||| |.|...+...+-|-+--||-- +.+-.+-+..+.|.++|+||++.|+-
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKN 410 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhcc
Confidence 4599999 678887766666655556521 33444445667889999999999863
No 162
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=47.89 E-value=8.7 Score=29.05 Aligned_cols=12 Identities=0% Similarity=-0.072 Sum_probs=9.9
Q ss_pred cCCcccCCCCcC
Q psy3664 138 TKSFKDLLTDEP 149 (504)
Q Consensus 138 ~k~~~c~v~~~~ 149 (504)
+.+|+||+|+.+
T Consensus 32 p~~w~CP~C~a~ 43 (50)
T cd00730 32 PDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCc
Confidence 468999999964
No 163
>KOG2593|consensus
Probab=47.54 E-value=9.2 Score=41.12 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=32.0
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
..|.||+|.+.|+ +-+|+.-|......|.|-+|+.+.-.++
T Consensus 127 ~~Y~Cp~C~kkyt---------------~Lea~~L~~~~~~~F~C~~C~gelveDe 167 (436)
T KOG2593|consen 127 AGYVCPNCQKKYT---------------SLEALQLLDNETGEFHCENCGGELVEDE 167 (436)
T ss_pred ccccCCccccchh---------------hhHHHHhhcccCceEEEecCCCchhccc
Confidence 4699999999998 3467777776567889999998877554
No 164
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=46.05 E-value=13 Score=33.87 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=24.7
Q ss_pred HHHHHHHHhc-----CCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeee
Q psy3664 64 EALMGYLKQY-----KHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVF 110 (504)
Q Consensus 64 ~~Il~~L~~~-----~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f 110 (504)
..|-+.|.+. ..||.+|-|| |. .+|+.+||||+..+
T Consensus 14 k~iA~lLl~GAkML~~hCp~Cg~PL---------F~--KdG~v~CPvC~~~~ 54 (131)
T COG1645 14 KKIAELLLQGAKMLAKHCPKCGTPL---------FR--KDGEVFCPVCGYRE 54 (131)
T ss_pred HHHHHHHHhhhHHHHhhCcccCCcc---------ee--eCCeEECCCCCceE
Confidence 3444566443 4699999886 55 46889999998633
No 165
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=44.59 E-value=15 Score=30.93 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=24.6
Q ss_pred CCccccCCCCCCCCc--eecCCCcEEeHHHH
Q psy3664 38 PFDHCCVSLQPYEHP--YCDKDGNIFELEAL 66 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P--v~~~~G~lf~k~~I 66 (504)
+-..|++|.+++.++ ++.|+|++|-+.|+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEecccc
Confidence 566799999999987 55899999988775
No 166
>KOG0825|consensus
Probab=44.53 E-value=5.9 Score=45.40 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=30.6
Q ss_pred ccCCCCCCCCc-eec--CCCcEEeHHHHHHHHHhcCCCCCCCC
Q psy3664 42 CCVSLQPYEHP-YCD--KDGNIFELEALMGYLKQYKHNPVTGK 81 (504)
Q Consensus 42 C~Lsl~pl~~P-v~~--~~G~lf~k~~Il~~L~~~~~~Pvtg~ 81 (504)
|++|++-+.+= +.+ .+||+||..||..|-+--.+||+...
T Consensus 126 CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~ 168 (1134)
T KOG0825|consen 126 CPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRG 168 (1134)
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhh
Confidence 77777776665 333 35999999999999998889998754
No 167
>KOG2932|consensus
Probab=43.57 E-value=5.5 Score=40.98 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=32.7
Q ss_pred eccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 103 CPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 103 CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
|--|.+.+.=..+ +-+|-||||++|-..-.+| -|+.|+++..|-.-|++
T Consensus 93 Cd~Cd~PI~IYGR---mIPCkHvFCl~CAr~~~dK----~Cp~C~d~VqrIeq~~~ 141 (389)
T KOG2932|consen 93 CDRCDFPIAIYGR---MIPCKHVFCLECARSDSDK----ICPLCDDRVQRIEQIMM 141 (389)
T ss_pred ecccCCcceeeec---ccccchhhhhhhhhcCccc----cCcCcccHHHHHHHhcc
Confidence 6666655542211 4489999999998755433 69999988776554443
No 168
>KOG3579|consensus
Probab=43.52 E-value=13 Score=37.83 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=31.2
Q ss_pred ccccCCCCCCCCc--eecCC--CcEEeHHHHHHHHHhcC
Q psy3664 40 DHCCVSLQPYEHP--YCDKD--GNIFELEALMGYLKQYK 74 (504)
Q Consensus 40 ~~C~Lsl~pl~~P--v~~~~--G~lf~k~~Il~~L~~~~ 74 (504)
-||.||.+-|+|- |=|+. .|-||.-|--+.|+.++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 6899999999997 55775 99999999999999885
No 169
>KOG0828|consensus
Probab=42.87 E-value=11 Score=41.26 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=39.1
Q ss_pred CCccccCCCCCCCC-----------------ceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCC
Q psy3664 38 PFDHCCVSLQPYEH-----------------PYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLD 84 (504)
Q Consensus 38 pf~~C~Lsl~pl~~-----------------Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~ 84 (504)
.-+-|+||.+|..- =++||+-|+|-..|++.|+..++ .||+++.|+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 36679999998651 13479999999999999999888 8999998874
No 170
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.11 E-value=15 Score=34.83 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=7.5
Q ss_pred CcccCCCCcC
Q psy3664 140 SFKDLLTDEP 149 (504)
Q Consensus 140 ~~~c~v~~~~ 149 (504)
.++||+|+.|
T Consensus 149 P~~CPiCga~ 158 (166)
T COG1592 149 PEVCPICGAP 158 (166)
T ss_pred CCcCCCCCCh
Confidence 3589999954
No 171
>KOG4692|consensus
Probab=40.12 E-value=18 Score=38.07 Aligned_cols=43 Identities=7% Similarity=-0.098 Sum_probs=37.9
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGK 81 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~ 81 (504)
=+-||||..--.+.|..|+||-=|+.||.++|+..+.|=.+..
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCkt 464 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKT 464 (489)
T ss_pred cccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecc
Confidence 4669999888888899999999999999999999998877654
No 172
>KOG1645|consensus
Probab=39.47 E-value=11 Score=40.40 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=26.7
Q ss_pred ccccCCCCCCCCc-----eecCCCcEEeHHHHHHHHH
Q psy3664 40 DHCCVSLQPYEHP-----YCDKDGNIFELEALMGYLK 71 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-----v~~~~G~lf~k~~Il~~L~ 71 (504)
+.||+|+.-+.-| |.-.+||+|--.||..||-
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~ 41 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG 41 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHh
Confidence 4699999988866 3456799999999999993
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=38.47 E-value=14 Score=38.54 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=38.7
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..| ||.|..++.=.-+=+.--+||--+|.=|...+... =+.+||-|-..|+++++-.
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~denv~~ 70 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDDENVRY 70 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccccceeE
Confidence 445 99998877544344556788966665555544422 3568999999999887643
No 174
>PF14353 CpXC: CpXC protein
Probab=38.37 E-value=32 Score=30.56 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=35.1
Q ss_pred eeeccceeeecCceeEEEEcccccee-cHHHHHHHhh-ccCCcccCCCCcCCCCCCeeEecCCCC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVY-SFEAVDQLNI-KTKSFKDLLTDEPFQRKNIITLQDPNE 163 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~-s~~av~~l~~-~~k~~~c~v~~~~f~~~DiI~lqdp~~ 163 (504)
..||.|+..|.-. +++.=|+- ..+..+++-. .--.+.||.||..|.-.=-+...||..
T Consensus 2 itCP~C~~~~~~~-----v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-----VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred cCCCCCCCeeEEE-----EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCC
Confidence 5699999988742 33333332 2333444331 122468999999998666566666654
No 175
>PF14353 CpXC: CpXC protein
Probab=38.19 E-value=23 Score=31.48 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCCCCCCcCCCCCceeEeeeeCC-------C---CceeeccceeeecCceeEEEEccccce
Q psy3664 75 HNPVTGKPLDVKSLIKLNFHKNA-------K---GEYHCPVLYKVFSKHSHLVAIETTGNV 125 (504)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~~n~-------~---~~~~CPvt~k~f~~~t~~v~i~~~G~V 125 (504)
+||.+|++....----|+...++ + ..|.||-|+..|.=...++|..+-.+.
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~~~ 63 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEKKF 63 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCCCE
Confidence 58888886554433223323322 2 348899999999888888887765443
No 176
>KOG2169|consensus
Probab=37.89 E-value=22 Score=40.63 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=63.9
Q ss_pred ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCC-CCceeEeeeeCCC---------CceeeccceeeecCceeEEEEcc
Q psy3664 52 PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDV-KSLIKLNFHKNAK---------GEYHCPVLYKVFSKHSHLVAIET 121 (504)
Q Consensus 52 Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~-kdLi~l~f~~n~~---------~~~~CPvt~k~f~~~t~~v~i~~ 121 (504)
++...-+..+..+.|++-++..+.-+. .+.. ..++..+++.+.+ -.+.||++++.+.--.+-. .
T Consensus 251 sl~~~~v~~~t~~~llq~~~~~~~~~~---~~~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~---~ 324 (636)
T KOG2169|consen 251 SLSVYFVEGLTSKDLLQRLKQNGKINR---NLSQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGH---T 324 (636)
T ss_pred ceEEEEecccCHHHHHHHHhccCCccC---chhHhHHHhhcccccCCcccceeccceeEecCCcccceeecCCccc---c
Confidence 344445667788888888876653221 1121 2333444444432 2378999998887442222 4
Q ss_pred ccceecHHH--HHHHhhccCCcccCCCCcCCCCCCeeEecCC
Q psy3664 122 TGNVYSFEA--VDQLNIKTKSFKDLLTDEPFQRKNIITLQDP 161 (504)
Q Consensus 122 ~G~V~s~~a--v~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp 161 (504)
|.|+=|.++ +-++|.+.-.|+|+||++.+.-+++|..+..
T Consensus 325 CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~ 366 (636)
T KOG2169|consen 325 CKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYF 366 (636)
T ss_pred cccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHH
Confidence 676554444 4556666667999999999998888865543
No 177
>KOG1940|consensus
Probab=37.82 E-value=13 Score=37.88 Aligned_cols=49 Identities=8% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCc
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDE 148 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~ 148 (504)
..+..||++...+......+-.-+|||....+++++.... . +.||+|.+
T Consensus 156 ~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 156 SSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 3456699999999988888888999999999999999844 3 89999975
No 178
>KOG1493|consensus
Probab=37.50 E-value=7.3 Score=32.11 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=34.7
Q ss_pred CccccCCcc-ccCCCCCCCC-c-eecCCCcEEeHHHHHHHHHh---cCCCCCCCCcC
Q psy3664 33 DFKRLPFDH-CCVSLQPYEH-P-YCDKDGNIFELEALMGYLKQ---YKHNPVTGKPL 83 (504)
Q Consensus 33 ~~~~lpf~~-C~Lsl~pl~~-P-v~~~~G~lf~k~~Il~~L~~---~~~~Pvtg~~l 83 (504)
.+.|.||+- ||-|.-|=.+ | |.-..-|.|-.-||++||.. ++.||+.++.-
T Consensus 24 GiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 24 GICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 356778875 6677777654 5 33344678888999999954 46788776643
No 179
>KOG4628|consensus
Probab=37.38 E-value=29 Score=36.63 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCCceeEeeeeCCC--CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCc
Q psy3664 85 VKSLIKLNFHKNAK--GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDE 148 (504)
Q Consensus 85 ~kdLi~l~f~~n~~--~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~ 148 (504)
++++--..|....+ +...|.||...|...-++. +-||+|.|--.||+.--...+. -||+|-.
T Consensus 212 l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~~~r~-~CPvCK~ 275 (348)
T KOG4628|consen 212 LKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLTQTRT-FCPVCKR 275 (348)
T ss_pred HhhCCcEEeccccccCCCceEEEeecccccCCeee-EecCCCchhhccchhhHhhcCc-cCCCCCC
Confidence 44444456666432 2258999999998776666 5899999999999986644332 3999964
No 180
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=35.99 E-value=37 Score=37.40 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=27.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
...|.|++|+-+...... -+...+-.-..++.| +.+|.||+|+.+
T Consensus 423 ~~~~~c~~c~~~yd~~~g----~~~~~~~~gt~~~~l---p~~~~cp~c~~~ 467 (479)
T PRK05452 423 GPRMQCSVCQWIYDPAKG----EPMQDVAPGTPWSEV---PDNFLCPECSLG 467 (479)
T ss_pred CCeEEECCCCeEECCCCC----CcccCCCCCCChhhC---CCCCcCcCCCCc
Confidence 467899888766654310 012223333455555 468999999965
No 181
>PRK00420 hypothetical protein; Validated
Probab=35.47 E-value=28 Score=30.86 Aligned_cols=28 Identities=50% Similarity=0.783 Sum_probs=17.3
Q ss_pred CCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeec
Q psy3664 74 KHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFS 111 (504)
Q Consensus 74 ~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~ 111 (504)
..||++|.|+ ....+|..+||+|+.+..
T Consensus 24 ~~CP~Cg~pL----------f~lk~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 24 KHCPVCGLPL----------FELKDGEVVCPVHGKVYI 51 (112)
T ss_pred CCCCCCCCcc----------eecCCCceECCCCCCeee
Confidence 5678777664 222356777887766543
No 182
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=35.44 E-value=22 Score=21.46 Aligned_cols=13 Identities=46% Similarity=0.953 Sum_probs=9.3
Q ss_pred eeeccceeeecCc
Q psy3664 101 YHCPVLYKVFSKH 113 (504)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (504)
|.||.|++.|...
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5678887777653
No 183
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=34.67 E-value=45 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=25.9
Q ss_pred cccCCCC--CCCCceecC---CC--cEEeHHHHHHHHHhcC--CCCCC
Q psy3664 41 HCCVSLQ--PYEHPYCDK---DG--NIFELEALMGYLKQYK--HNPVT 79 (504)
Q Consensus 41 ~C~Lsl~--pl~~Pv~~~---~G--~lf~k~~Il~~L~~~~--~~Pvt 79 (504)
.|.||+. .-.+|.+.| .| +.+=..|+..||...+ .||+.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC 48 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEIC 48 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCC
Confidence 3777775 223444433 24 6899999999998776 56654
No 184
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.40 E-value=17 Score=35.72 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=31.3
Q ss_pred ceeeccceeeecCceeEEEEccccc-eecHH-----HHHHHhh-ccCCcccCCCCcCCCCCCeeEec
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGN-VYSFE-----AVDQLNI-KTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~-V~s~~-----av~~l~~-~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
++.||||+++|+.. .+++.+. |...+ -.+.+|- --.-|.||.|+=.+...|.-.|.
T Consensus 5 ~~~CPvC~~~F~~~----~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~ 67 (214)
T PF09986_consen 5 KITCPVCGKEFKTK----KVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLS 67 (214)
T ss_pred ceECCCCCCeeeee----EEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCC
Confidence 57899999999753 2233222 21100 0111220 01247899999998888865543
No 185
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=33.15 E-value=22 Score=21.07 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=6.8
Q ss_pred eeeccceeeecC
Q psy3664 101 YHCPVLYKVFSK 112 (504)
Q Consensus 101 ~~CPvt~k~f~~ 112 (504)
|.||+|++.|..
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 567777777764
No 186
>KOG1734|consensus
Probab=32.16 E-value=14 Score=37.48 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=36.7
Q ss_pred ceeeccceeeecCceeE------EEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 100 EYHCPVLYKVFSKHSHL------VAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~------v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
+-+|.||++.|-..-.- .+--.|+|||-+-||+--.+-.|.-.||-|-++.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 35799998888644310 1223599999999999988766666799996654
No 187
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=32.08 E-value=27 Score=26.92 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=13.9
Q ss_pred CcccCCCCcCCC-CCCeeEe
Q psy3664 140 SFKDLLTDEPFQ-RKNIITL 158 (504)
Q Consensus 140 ~~~c~v~~~~f~-~~DiI~l 158 (504)
..+|++|+++|+ .+|||.=
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvC 24 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVC 24 (54)
T ss_pred CccChhhCCcccCCCCEEEC
Confidence 347999999998 5555543
No 188
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=31.85 E-value=54 Score=34.17 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=44.8
Q ss_pred ceeeccceee---ecCceeEEE-EccccceecHHHHHHHhhc-----cCCcccCCCCcCCCCCCeeEecCCCCcchhccc
Q psy3664 100 EYHCPVLYKV---FSKHSHLVA-IETTGNVYSFEAVDQLNIK-----TKSFKDLLTDEPFQRKNIITLQDPNELSKFNLT 170 (504)
Q Consensus 100 ~~~CPvt~k~---f~~~t~~v~-i~~~G~V~s~~av~~l~~~-----~k~~~c~v~~~~f~~~DiI~lqdp~~~~~~~~~ 170 (504)
...|-+|... |...+-+.+ +--.-++...+|+.++-.. ...|.||.|+++-.....|.|-...+.---+|+
T Consensus 235 rlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~ 314 (415)
T COG5533 235 RLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHIS 314 (415)
T ss_pred hhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEee
Confidence 3567776543 333333322 2223344478888877643 357999999998887777766544433334567
Q ss_pred cccc
Q psy3664 171 NFHH 174 (504)
Q Consensus 171 ~f~h 174 (504)
.|+-
T Consensus 315 RF~i 318 (415)
T COG5533 315 RFHI 318 (415)
T ss_pred eeeE
Confidence 7863
No 189
>KOG1813|consensus
Probab=31.19 E-value=21 Score=36.73 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=32.1
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
|.|-||.+.|-.- ++..|||-||..|.-.=- .+.-+|.+|+..
T Consensus 242 f~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~--qk~~~c~vC~~~ 284 (313)
T KOG1813|consen 242 FKCFICRKYFYRP----VVTKCGHYFCEVCALKPY--QKGEKCYVCSQQ 284 (313)
T ss_pred ccccccccccccc----hhhcCCceeehhhhcccc--ccCCcceecccc
Confidence 6799999999876 567899999998853322 233479999854
No 190
>KOG0804|consensus
Probab=30.20 E-value=26 Score=37.98 Aligned_cols=70 Identities=19% Similarity=0.082 Sum_probs=0.0
Q ss_pred ccCCCCCCCCce----ecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecCceeEE
Q psy3664 42 CCVSLQPYEHPY----CDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLV 117 (504)
Q Consensus 42 C~Lsl~pl~~Pv----~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v 117 (504)
||+||+-+..-+ .+.+-|-|.-.|+..| ....|||+++-.+.. ....-.|-+|+..++ .+
T Consensus 178 CpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p~----------~ve~~~c~~c~~~~~----Lw 241 (493)
T KOG0804|consen 178 CPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSPS----------VVESSLCLACGCTED----LW 241 (493)
T ss_pred cchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCcc----------hhhhhhhhhhccccc----EE
Q ss_pred EEccccceec
Q psy3664 118 AIETTGNVYS 127 (504)
Q Consensus 118 ~i~~~G~V~s 127 (504)
.---||||-|
T Consensus 242 icliCg~vgc 251 (493)
T KOG0804|consen 242 ICLICGNVGC 251 (493)
T ss_pred EEEEccceec
No 191
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=30.15 E-value=8.3 Score=29.18 Aligned_cols=9 Identities=22% Similarity=0.619 Sum_probs=6.2
Q ss_pred ceeecccee
Q psy3664 100 EYHCPVLYK 108 (504)
Q Consensus 100 ~~~CPvt~k 108 (504)
.++||||..
T Consensus 31 ~v~CPiC~~ 39 (54)
T PF05605_consen 31 NVVCPICSS 39 (54)
T ss_pred CccCCCchh
Confidence 467887764
No 192
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=29.77 E-value=26 Score=35.16 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=20.4
Q ss_pred ccccCCCCCCC---CceecCCCcEEeHH
Q psy3664 40 DHCCVSLQPYE---HPYCDKDGNIFELE 64 (504)
Q Consensus 40 ~~C~Lsl~pl~---~Pv~~~~G~lf~k~ 64 (504)
..||+|.+||. ..++|..||-||..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 36999999996 34889999999764
No 193
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.86 E-value=30 Score=26.10 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 129 EAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 129 ~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
+.++.|... +. .||||+.+|++.
T Consensus 11 k~i~~l~~~-~~-~CPlC~r~l~~e 33 (54)
T PF04423_consen 11 KYIEELKEA-KG-CCPLCGRPLDEE 33 (54)
T ss_dssp HHHHHHTT--SE-E-TTT--EE-HH
T ss_pred HHHHHHhcC-CC-cCCCCCCCCCHH
Confidence 456666632 22 899999999754
No 194
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=28.79 E-value=61 Score=27.50 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=34.4
Q ss_pred cCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCC
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVK 86 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~k 86 (504)
.|-.+|+-|.+++. .++.-=|+.||..+|+|.-++++++..
T Consensus 31 ~~rS~C~~C~~~L~---------~~~lIPi~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 31 FPRSHCPHCGHPLS---------WWDLIPILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CCCCcCcCCCCcCc---------ccccchHHHHHHhCCCCcccCCCCChH
Confidence 36788999998887 677788899999999999999987753
No 195
>KOG0311|consensus
Probab=28.56 E-value=9 Score=40.17 Aligned_cols=50 Identities=8% Similarity=0.136 Sum_probs=38.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
..+++||||.--+.+. ...+.|+|=||.+||-.-.. ..+-.||-|-+...
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r-~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALR-SGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHH-hcCCCCchHHhhcc
Confidence 3569999998777653 34578999999999988664 45557999987765
No 196
>KOG0802|consensus
Probab=28.49 E-value=33 Score=38.32 Aligned_cols=63 Identities=3% Similarity=0.014 Sum_probs=45.4
Q ss_pred ceeeccceeeecCceeEE-EEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCCCCc
Q psy3664 100 EYHCPVLYKVFSKHSHLV-AIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNEL 164 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v-~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp~~~ 164 (504)
.-.|+||...+....++. -.-+|||+|...|+.+--.. . -.||.|-..+....++....++..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~-qtCP~CR~~~~~~~~~~~~~~~~~ 354 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-Q-QTCPTCRTVLYDYVLWQIAALQTW 354 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH-h-CcCCcchhhhhccccccccCCccc
Confidence 357999999888754433 35689999999999885532 2 269999987777777666655543
No 197
>KOG2272|consensus
Probab=26.40 E-value=33 Score=34.55 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=70.1
Q ss_pred ccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCC---cCCCCCceeEeeeeCCCCceeeccceeeecCceeEE-
Q psy3664 42 CCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGK---PLDVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLV- 117 (504)
Q Consensus 42 C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~---~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v- 117 (504)
|.-|..-|..-.=...|-|||..|- ..=..||.|. |+.-+-+..+.=++. ..-|+|..|.|.|-+|-|.-
T Consensus 166 Ct~C~keL~sdaRevk~eLyClrCh-----D~mgipiCgaC~rpIeervi~amgKhWH-veHFvCa~CekPFlGHrHYEk 239 (332)
T KOG2272|consen 166 CTTCGKELTSDAREVKGELYCLRCH-----DKMGIPICGACRRPIEERVIFAMGKHWH-VEHFVCAKCEKPFLGHRHYEK 239 (332)
T ss_pred cccccccccchhhhhccceeccccc-----cccCCcccccccCchHHHHHHHhccccc-hhheeehhcCCcccchhhhhh
Confidence 8888888876655667999998874 2224676654 676655655543443 23699999999998876521
Q ss_pred ----E------------EccccceecHHHHHHHhhc--cCCcccCCCCcCCCCCCeeE
Q psy3664 118 ----A------------IETTGNVYSFEAVDQLNIK--TKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 118 ----~------------i~~~G~V~s~~av~~l~~~--~k~~~c~v~~~~f~~~DiI~ 157 (504)
| --.|+.|+.-+.+.-|+.. .+-+.|..||++++-+|-..
T Consensus 240 kGlaYCe~h~~qLfG~~CF~C~~~i~G~vv~al~KawCv~cf~Cs~Cdkkl~~K~Kf~ 297 (332)
T KOG2272|consen 240 KGLAYCETHYHQLFGNLCFICNRVIGGDVVSALNKAWCVECFSCSTCDKKLTQKNKFY 297 (332)
T ss_pred cCchhHHHHHHHHhhhhheecCCccCccHHHHhhhhhcccccccccccccccccccee
Confidence 0 0126666666666666621 23346777777776555443
No 198
>KOG0801|consensus
Probab=25.91 E-value=37 Score=32.00 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=42.2
Q ss_pred CcCCCCCceeEeeeeCCCCceeeccceeeecC---ceeEEE-EccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 81 KPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSK---HSHLVA-IETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 81 ~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~---~t~~v~-i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
...+|.|-++++.-.- .-+-||||.|..-. .-|+|. +..----|.++.++ .....|.+|-+.+..-|.|
T Consensus 121 sRrsla~slP~hi~~~--~g~KCPvC~K~V~sDd~e~HlvMCLtkPrlsYNdDVL~-----ddkGECvICLEdL~~GdtI 193 (205)
T KOG0801|consen 121 SRRSLADSLPVHIMDH--SGMKCPVCHKVVPSDDAEIHLVMCLTKPRLSYNDDVLK-----DDKGECVICLEDLEAGDTI 193 (205)
T ss_pred hhhhhhhccceeeecc--CCccCCccccccCCCcceEEEEEEecccccccccchhc-----ccCCcEEEEhhhccCCCce
Confidence 3456677778865542 24789999876643 234443 32222334444443 2334799999998888877
Q ss_pred E
Q psy3664 157 T 157 (504)
Q Consensus 157 ~ 157 (504)
.
T Consensus 194 A 194 (205)
T KOG0801|consen 194 A 194 (205)
T ss_pred e
Confidence 4
No 199
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=25.90 E-value=61 Score=27.35 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=34.3
Q ss_pred eeccceeeecC----------ceeEEEEccccceecHHHHHHHhhc-cCCcccCCCCcCCCC
Q psy3664 102 HCPVLYKVFSK----------HSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLTDEPFQR 152 (504)
Q Consensus 102 ~CPvt~k~f~~----------~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~~~~f~~ 152 (504)
.|+||...|.+ .-.+ ++-.|||.|-.-||.+-... ...-.||.|-.+|.-
T Consensus 23 ~CgICr~~fdg~Cp~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 23 VCGICRMPFDGCCPDCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ceeeEecccccCCCCccCCCCCCce-eeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 46666666653 2234 47789999999999885433 234589999887764
No 200
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.03 E-value=23 Score=32.58 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeec
Q psy3664 75 HNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFS 111 (504)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~ 111 (504)
.||.+|...+..+...+ .+ .++.|.||.|+..+-
T Consensus 101 ~Cp~C~~~y~~~ea~~~-~d--~~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 101 KCPNCQSKYTFLEANQL-LD--MDGTFTCPRCGEELE 134 (147)
T ss_pred ECcCCCCEeeHHHHHHh-cC--CCCcEECCCCCCEEE
Confidence 39999988887666554 11 367799999988774
No 201
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=24.93 E-value=56 Score=28.38 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=24.3
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhh-ccCCcccCCCCc
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNI-KTKSFKDLLTDE 148 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~-~~k~~~c~v~~~ 148 (504)
-|+||.|+..|++. ++-+++++. ..+.|.|-+||+
T Consensus 3 Vf~i~~T~EiF~dY--------------e~Y~~R~~~y~~~vwtC~~TGk 38 (102)
T PF10537_consen 3 VFYIPFTGEIFRDY--------------EEYLKRMILYNQRVWTCEITGK 38 (102)
T ss_pred eEEeCCCCcccCCH--------------HHHHHHHHHHhCCeeEEecCCC
Confidence 48888888888874 334444432 357899998885
No 202
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=24.92 E-value=23 Score=35.40 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=38.5
Q ss_pred eeeccce--eeecCceeEEEEccccceecHHHHHHHhhccCCcccC--CCCcCCC
Q psy3664 101 YHCPVLY--KVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDL--LTDEPFQ 151 (504)
Q Consensus 101 ~~CPvt~--k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~--v~~~~f~ 151 (504)
-.||||. .-++.+.+|....-|=|-+|++|++.+- ....-.|| -|++-+.
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIF-s~GpAqCP~~gC~kILR 64 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIF-SRGPAQCPYKGCGKILR 64 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHh-cCCCCCCCCccHHHHHH
Confidence 4699995 6778888887555699999999999976 34566898 7886443
No 203
>KOG1701|consensus
Probab=23.37 E-value=30 Score=37.30 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE--eeeeCCCCceeeccceeeecCce
Q psy3664 38 PFDHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL--NFHKNAKGEYHCPVLYKVFSKHS 114 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l--~f~~n~~~~~~CPvt~k~f~~~t 114 (504)
.+..|..|...|.-- .-..+|..||-.|..+-|.+ |-++|+++.-+-|.-+ -|+. +-|.|=||.+-+.+-
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek---C~~Cg~~I~d~iLrA~GkayHp---~CF~Cv~C~r~ldgi- 373 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK---CNKCGEPIMDRILRALGKAYHP---GCFTCVVCARCLDGI- 373 (468)
T ss_pred cceehHhhhhhhccccccccCCcccchHHHHHHHHH---HhhhhhHHHHHHHHhcccccCC---CceEEEEeccccCCc-
Confidence 555688888777754 55778999999998888875 5556776654444333 2443 368999998888653
Q ss_pred eEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 115 HLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 115 ~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
. +.+-...+|+|-..+-+--.. +|-+|++|+-.
T Consensus 374 p-Ftvd~~n~v~Cv~dfh~kfAP----rCs~C~~PI~P 406 (468)
T KOG1701|consen 374 P-FTVDSQNNVYCVPDFHKKFAP----RCSVCGNPILP 406 (468)
T ss_pred c-ccccCCCceeeehhhhhhcCc----chhhccCCccC
Confidence 2 236778999988887654433 79999998763
No 204
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=23.26 E-value=32 Score=31.34 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=15.9
Q ss_pred CccccCCCCCCCCceecCCCcEEe
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFE 62 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~ 62 (504)
-.|||.|..||=. .+|.|||
T Consensus 28 ~~hCp~Cg~PLF~----KdG~v~C 47 (131)
T COG1645 28 AKHCPKCGTPLFR----KDGEVFC 47 (131)
T ss_pred HhhCcccCCccee----eCCeEEC
Confidence 5789999999754 7788884
No 205
>PRK12495 hypothetical protein; Provisional
Probab=23.18 E-value=65 Score=31.87 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=6.9
Q ss_pred EeHHHHHHHHH
Q psy3664 61 FELEALMGYLK 71 (504)
Q Consensus 61 f~k~~Il~~L~ 71 (504)
|+|+.=-+-|+
T Consensus 4 FDkEaEREkLR 14 (226)
T PRK12495 4 FDKEAEREKLR 14 (226)
T ss_pred hhHHHHHHHHH
Confidence 66666666663
No 206
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=22.14 E-value=53 Score=20.21 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=9.4
Q ss_pred eeeccceeeecCc
Q psy3664 101 YHCPVLYKVFSKH 113 (504)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (504)
|.|.+|.+.|++.
T Consensus 1 ~~C~~C~~~f~s~ 13 (25)
T PF12874_consen 1 FYCDICNKSFSSE 13 (25)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCCcCCH
Confidence 6788888877753
No 207
>KOG3002|consensus
Probab=21.97 E-value=78 Score=32.80 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=35.8
Q ss_pred ccCCccccCCCCCCCCcee-cCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 36 RLPFDHCCVSLQPYEHPYC-DKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 36 ~lpf~~C~Lsl~pl~~Pv~-~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
.+.+--||+|..++.-|+. |..|||=|-.|-. +...+||.+..++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3567779999999999966 8899999988865 44556777655554
No 208
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=21.75 E-value=68 Score=20.46 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=10.3
Q ss_pred CCceeeccceeeec
Q psy3664 98 KGEYHCPVLYKVFS 111 (504)
Q Consensus 98 ~~~~~CPvt~k~f~ 111 (504)
+-.|.||+|.+.|.
T Consensus 12 ~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 12 EKPYKCPYCGKSFS 25 (26)
T ss_dssp SSSEEESSSSEEES
T ss_pred CCCCCCCCCcCeeC
Confidence 34588888888875
No 209
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=21.06 E-value=40 Score=21.49 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=8.5
Q ss_pred eeeccceeeecC
Q psy3664 101 YHCPVLYKVFSK 112 (504)
Q Consensus 101 ~~CPvt~k~f~~ 112 (504)
|.|++|.+.|++
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T PF12171_consen 2 FYCDACDKYFSS 13 (27)
T ss_dssp CBBTTTTBBBSS
T ss_pred CCcccCCCCcCC
Confidence 667777777765
No 210
>KOG4577|consensus
Probab=20.95 E-value=57 Score=33.46 Aligned_cols=91 Identities=8% Similarity=0.227 Sum_probs=58.6
Q ss_pred ccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCCceeE--eeeeCCCCceeeccceeeecCceeEEE
Q psy3664 42 CCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKSLIKL--NFHKNAKGEYHCPVLYKVFSKHSHLVA 118 (504)
Q Consensus 42 C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kdLi~l--~f~~n~~~~~~CPvt~k~f~~~t~~v~ 118 (504)
|+-|..+|.+-.....|.+||++... +.+| +|-.+.+-+-..++|+- +|.-. -.-|.|-||...++.--.|.
T Consensus 63 Cs~C~~qL~drCFsR~~s~yCkedFf---KrfGTKCsaC~~GIpPtqVVRkAqd~VYH-l~CF~C~iC~R~L~TGdEFY- 137 (383)
T KOG4577|consen 63 CSDCHDQLADRCFSREGSVYCKEDFF---KRFGTKCSACQEGIPPTQVVRKAQDFVYH-LHCFACFICKRQLATGDEFY- 137 (383)
T ss_pred hhhhhhHHHHHHhhcCCceeehHHHH---HHhCCcchhhcCCCChHHHHHHhhcceee-hhhhhhHhhhcccccCCeeE-
Confidence 66666677666667889999998654 5554 35555444444444332 01100 12478999999998655554
Q ss_pred EccccceecHHHHHHHhhc
Q psy3664 119 IETTGNVYSFEAVDQLNIK 137 (504)
Q Consensus 119 i~~~G~V~s~~av~~l~~~ 137 (504)
+..-+-.+|.+-+++...+
T Consensus 138 LmeD~rLvCK~DYE~Ak~k 156 (383)
T KOG4577|consen 138 LMEDARLVCKDDYETAKQK 156 (383)
T ss_pred EeccceeehhhhHHHHHhc
Confidence 5555999999999988743
No 211
>KOG3161|consensus
Probab=20.19 E-value=29 Score=39.27 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=38.5
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCCCCcc
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELS 165 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp~~~~ 165 (504)
..|+||--.|-..+..=+.-.|||++|..|++.+-.. .|+ . .++|..++-+|.++.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----scp---~--~~De~~~~~~~~e~p 67 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----SCP---T--KRDEDSSLMQLKEEP 67 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----cCC---C--CccccchhcChhhcc
Confidence 4699997777766666556679999999999998743 466 2 334445555565543
Done!