Query psy3664
Match_columns 504
No_of_seqs 394 out of 1962
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:29:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fu0_A Cyclophilin, putative; 100.0 9.2E-43 3.1E-47 322.9 15.3 135 336-504 5-140 (160)
2 2x7k_A Peptidyl-prolyl CIS-tra 100.0 1.1E-42 3.7E-47 324.2 15.5 136 335-504 10-146 (166)
3 2ok3_A Peptidyl-prolyl CIS-tra 100.0 2.9E-42 1E-46 319.9 15.3 132 339-504 3-135 (161)
4 1zkc_A Peptidyl-prolyl CIS-tra 100.0 3.4E-42 1.2E-46 328.3 15.5 132 339-504 22-154 (197)
5 2a2n_A Peptidylprolyl isomeras 100.0 4.4E-42 1.5E-46 322.8 15.6 133 338-504 23-156 (176)
6 2b71_A Cyclophilin-like protei 100.0 5.9E-42 2E-46 326.6 15.5 135 336-504 38-173 (196)
7 2poe_A Cyclophilin-like protei 100.0 9E-42 3.1E-46 323.0 15.7 135 336-504 16-155 (185)
8 3bo7_A Peptidyl-prolyl CIS-tra 100.0 8.4E-42 2.9E-46 327.4 14.7 139 339-504 9-153 (201)
9 2k7n_A Peptidyl-prolyl CIS-tra 100.0 2.5E-41 8.7E-46 323.5 15.5 135 336-504 11-146 (203)
10 2r99_A Peptidyl-prolyl CIS-tra 100.0 9.3E-41 3.2E-45 313.1 16.5 138 334-504 9-154 (173)
11 2wfi_A Peptidyl-prolyl CIS-tra 100.0 8.3E-41 2.8E-45 315.1 16.0 138 334-504 7-160 (179)
12 2cmt_A Peptidyl-prolyl CIS-tra 100.0 9.4E-41 3.2E-45 312.7 16.2 138 334-504 8-153 (172)
13 1mzw_A Cyclophilin H, U-snRNP- 100.0 8.6E-41 2.9E-45 314.5 15.7 137 335-504 9-158 (177)
14 2z6w_A Peptidyl-prolyl CIS-tra 100.0 1E-40 3.4E-45 310.7 16.0 137 335-504 2-146 (165)
15 2igv_A Peptidyl-prolyl CIS-tra 100.0 1.1E-40 3.8E-45 312.7 15.6 137 335-504 2-153 (173)
16 2haq_A Cyclophilin; rotamase, 100.0 1E-40 3.4E-45 312.3 14.5 137 334-504 9-153 (172)
17 1a58_A Cyclophilin; isomerase, 100.0 1.4E-40 4.8E-45 313.1 15.6 137 335-504 5-157 (177)
18 1qng_A Peptidyl-prolyl CIS-tra 100.0 1.3E-40 4.4E-45 311.4 14.7 137 335-504 2-152 (170)
19 3pmp_A Cyclophilin A; peptidyl 100.0 3.2E-40 1.1E-44 307.1 16.1 136 336-504 2-145 (164)
20 2he9_A NK-tumor recognition pr 100.0 2.9E-40 9.8E-45 314.3 15.9 137 335-504 18-170 (192)
21 1w74_A Peptidyl-prolyl CIS-tra 100.0 2.5E-40 8.6E-45 314.3 14.9 132 336-504 23-172 (191)
22 2poy_A Peptidyl-prolyl CIS-tra 100.0 3.4E-40 1.2E-44 312.4 15.4 141 331-504 14-169 (186)
23 3ich_A Peptidyl-prolyl CIS-tra 100.0 4.4E-40 1.5E-44 312.2 14.6 134 338-504 17-158 (188)
24 2hq6_A Serologically defined c 100.0 1.3E-39 4.5E-44 308.1 13.6 133 337-504 25-160 (185)
25 3k2c_A Peptidyl-prolyl CIS-tra 100.0 3.4E-39 1.2E-43 307.3 16.4 140 332-504 23-170 (193)
26 1v9t_A Cyclophilin B; beta bar 100.0 4.4E-39 1.5E-43 300.0 15.3 134 334-504 2-142 (166)
27 4fru_A Cyclophilin B, peptidyl 100.0 3.6E-39 1.2E-43 305.6 14.5 135 337-504 13-155 (185)
28 1z81_A Cyclophilin; structural 100.0 3.2E-39 1.1E-43 314.0 14.5 140 332-504 55-209 (229)
29 3bkp_A Cyclophilin; malaria, i 100.0 4.9E-39 1.7E-43 313.9 14.9 132 338-504 23-173 (232)
30 3rdd_A Peptidyl-prolyl CIS-tra 100.0 8.6E-39 2.9E-43 302.5 15.1 138 334-504 20-165 (184)
31 1lop_A Cyclophilin A; rotamase 100.0 8.7E-39 3E-43 297.5 13.5 129 339-504 2-140 (164)
32 3s6m_A Peptidyl-prolyl CIS-tra 100.0 7.7E-39 2.6E-43 298.7 12.9 133 335-504 2-144 (167)
33 2c3b_A Ppiase, cyclophilin; is 100.0 1.9E-39 6.4E-44 304.0 8.3 128 344-504 18-152 (172)
34 2ose_A Probable peptidyl-proly 100.0 9.8E-38 3.4E-42 305.2 13.1 140 335-504 13-187 (234)
35 1ihg_A Cyclophilin 40; ppiase 100.0 2.9E-37 1E-41 320.3 15.8 136 336-504 15-166 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 3.2E-36 1.1E-40 310.2 5.0 168 315-502 157-344 (369)
37 2bay_A PRE-mRNA splicing facto 99.4 9.9E-14 3.4E-18 107.9 4.6 56 40-95 4-60 (61)
38 4ap4_A E3 ubiquitin ligase RNF 99.4 3E-13 1E-17 119.1 6.4 114 40-158 8-131 (133)
39 2kr4_A Ubiquitin conjugation f 99.0 4.7E-10 1.6E-14 92.6 7.1 60 34-93 8-68 (85)
40 1wgm_A Ubiquitin conjugation f 99.0 6.6E-10 2.3E-14 94.2 7.5 63 33-95 15-79 (98)
41 2kre_A Ubiquitin conjugation f 99.0 7.7E-10 2.6E-14 94.2 6.7 59 35-93 24-83 (100)
42 2f42_A STIP1 homology and U-bo 98.8 3.2E-09 1.1E-13 99.5 5.6 57 38-94 105-162 (179)
43 2yu4_A E3 SUMO-protein ligase 98.8 4.4E-09 1.5E-13 88.2 4.3 52 39-90 7-68 (94)
44 2c2l_A CHIP, carboxy terminus 98.7 1.8E-08 6.2E-13 99.1 6.2 54 37-90 206-260 (281)
45 1t1h_A Gspef-atpub14, armadill 98.6 5.1E-08 1.7E-12 78.2 5.6 53 38-90 7-60 (78)
46 2djb_A Polycomb group ring fin 98.3 1.3E-06 4.4E-11 69.0 7.4 54 38-91 14-68 (72)
47 3ng2_A RNF4, snurf, ring finge 98.2 7.4E-07 2.5E-11 69.7 4.4 54 39-92 10-70 (71)
48 2xeu_A Ring finger protein 4; 98.2 7.8E-07 2.7E-11 68.0 3.8 54 40-93 4-64 (64)
49 2csy_A Zinc finger protein 183 98.2 4.2E-06 1.4E-10 67.5 8.2 46 39-84 15-60 (81)
50 3lrq_A E3 ubiquitin-protein li 98.2 1.1E-06 3.8E-11 74.2 4.7 54 39-92 22-77 (100)
51 2ecy_A TNF receptor-associated 98.1 2.4E-06 8.2E-11 66.2 5.2 51 38-88 14-65 (66)
52 2yur_A Retinoblastoma-binding 98.1 4.5E-06 1.5E-10 66.3 6.7 50 39-88 15-67 (74)
53 2ecw_A Tripartite motif-contai 98.1 7.3E-06 2.5E-10 65.9 7.7 54 38-91 18-77 (85)
54 2bay_A PRE-mRNA splicing facto 98.1 1.4E-06 4.7E-11 67.3 2.9 56 100-160 3-58 (61)
55 2d8t_A Dactylidin, ring finger 98.1 1.8E-06 6.1E-11 68.0 3.4 54 37-90 13-66 (71)
56 3ztg_A E3 ubiquitin-protein li 98.1 3.9E-06 1.3E-10 69.2 5.6 46 38-83 12-60 (92)
57 2ecv_A Tripartite motif-contai 98.1 6.4E-06 2.2E-10 66.2 6.4 54 38-91 18-77 (85)
58 3htk_C E3 SUMO-protein ligase 98.0 1.3E-06 4.6E-11 85.9 2.4 51 39-89 181-236 (267)
59 2ct2_A Tripartite motif protei 98.0 9.2E-06 3.2E-10 66.0 7.1 54 38-91 14-74 (88)
60 2y43_A E3 ubiquitin-protein li 98.0 4.2E-06 1.4E-10 70.1 5.1 52 39-90 22-74 (99)
61 2ysl_A Tripartite motif-contai 98.0 1.1E-05 3.6E-10 63.4 7.0 51 38-88 19-72 (73)
62 4ayc_A E3 ubiquitin-protein li 98.0 3.1E-06 1E-10 75.5 4.4 44 41-84 55-98 (138)
63 1jm7_A BRCA1, breast cancer ty 98.0 4E-06 1.4E-10 71.5 4.3 53 39-91 21-76 (112)
64 3fl2_A E3 ubiquitin-protein li 98.0 6.7E-06 2.3E-10 71.8 5.9 47 39-85 52-99 (124)
65 3hct_A TNF receptor-associated 98.0 5.6E-06 1.9E-10 71.8 5.1 53 39-91 18-71 (118)
66 1z6u_A NP95-like ring finger p 98.0 6.3E-06 2.1E-10 74.8 5.6 49 39-87 78-127 (150)
67 2ckl_B Ubiquitin ligase protei 97.9 7.3E-06 2.5E-10 75.1 5.3 46 39-84 54-101 (165)
68 2ea6_A Ring finger protein 4; 97.9 1.4E-05 4.7E-10 61.8 6.0 48 38-85 14-68 (69)
69 1g25_A CDK-activating kinase a 97.9 5.4E-06 1.8E-10 64.0 3.5 58 100-158 3-61 (65)
70 1rmd_A RAG1; V(D)J recombinati 97.9 1.1E-05 3.9E-10 69.4 5.1 53 39-91 23-76 (116)
71 2ckl_A Polycomb group ring fin 97.8 1.4E-05 4.9E-10 67.9 5.2 48 39-86 15-63 (108)
72 1g25_A CDK-activating kinase a 97.8 1.4E-05 5E-10 61.5 4.1 55 40-94 4-64 (65)
73 2egp_A Tripartite motif-contai 97.8 2.5E-06 8.6E-11 68.1 -0.6 53 38-90 11-70 (79)
74 2ect_A Ring finger protein 126 97.8 3.9E-05 1.3E-09 61.1 6.3 54 38-91 14-70 (78)
75 2ysj_A Tripartite motif-contai 97.7 3.6E-05 1.2E-09 58.8 4.9 41 38-78 19-62 (63)
76 3m62_A Ubiquitin conjugation f 97.7 2.3E-05 7.7E-10 89.3 5.0 54 38-91 890-944 (968)
77 3hcs_A TNF receptor-associated 97.6 4.1E-05 1.4E-09 70.3 5.1 66 39-104 18-86 (170)
78 2ecm_A Ring finger and CHY zin 97.6 7.1E-05 2.4E-09 55.3 5.4 46 39-84 5-54 (55)
79 2xeu_A Ring finger protein 4; 97.6 3E-05 1E-09 59.0 3.4 58 99-158 2-62 (64)
80 2kre_A Ubiquitin conjugation f 97.6 4.8E-05 1.7E-09 64.3 4.9 53 99-157 28-80 (100)
81 1chc_A Equine herpes virus-1 r 97.6 5.7E-05 2E-09 58.4 4.8 45 40-84 6-51 (68)
82 2ecj_A Tripartite motif-contai 97.6 5.3E-05 1.8E-09 56.6 4.3 41 38-78 14-57 (58)
83 2kr4_A Ubiquitin conjugation f 97.6 3.9E-05 1.3E-09 62.8 3.4 53 99-157 13-65 (85)
84 1wgm_A Ubiquitin conjugation f 97.5 7.1E-05 2.4E-09 63.1 4.8 54 98-157 20-74 (98)
85 2ep4_A Ring finger protein 24; 97.5 0.00015 5.3E-09 57.0 6.4 47 38-84 14-63 (74)
86 4ap4_A E3 ubiquitin ligase RNF 97.5 4.5E-05 1.6E-09 66.3 3.3 54 39-92 72-132 (133)
87 2y1n_A E3 ubiquitin-protein li 97.5 4.8E-05 1.6E-09 79.1 4.0 53 39-91 332-385 (389)
88 2ct2_A Tripartite motif protei 97.5 6E-05 2.1E-09 61.1 3.7 59 98-156 13-72 (88)
89 2kiz_A E3 ubiquitin-protein li 97.5 0.00027 9.2E-09 54.8 7.4 48 38-85 13-63 (69)
90 1jm7_B BARD1, BRCA1-associated 97.5 2.1E-05 7.1E-10 68.0 0.8 48 39-88 22-70 (117)
91 1x4j_A Ring finger protein 38; 97.5 8.2E-05 2.8E-09 58.9 4.1 47 39-85 23-72 (75)
92 1t1h_A Gspef-atpub14, armadill 97.4 0.00013 4.3E-09 58.1 4.9 54 99-157 7-60 (78)
93 3ng2_A RNF4, snurf, ring finge 97.4 6.2E-05 2.1E-09 58.6 3.0 59 98-158 8-69 (71)
94 2l0b_A E3 ubiquitin-protein li 97.4 9.8E-05 3.3E-09 61.0 4.1 46 39-84 40-88 (91)
95 1v87_A Deltex protein 2; ring- 97.4 8.9E-05 3E-09 63.4 3.9 47 38-84 24-93 (114)
96 3knv_A TNF receptor-associated 97.4 4.3E-05 1.5E-09 68.6 1.6 45 39-83 31-76 (141)
97 2yu4_A E3 SUMO-protein ligase 97.3 0.00015 5.1E-09 60.4 4.4 57 98-157 5-68 (94)
98 1iym_A EL5; ring-H2 finger, ub 97.3 0.00013 4.5E-09 53.9 3.7 45 40-84 6-54 (55)
99 2djb_A Polycomb group ring fin 97.3 9.3E-05 3.2E-09 58.1 2.9 56 98-158 13-68 (72)
100 2ecw_A Tripartite motif-contai 97.3 0.00021 7.3E-09 57.1 5.2 59 98-160 17-79 (85)
101 2ecl_A Ring-box protein 2; RNF 97.3 0.00012 4E-09 59.3 3.4 49 39-87 15-78 (81)
102 3l11_A E3 ubiquitin-protein li 97.3 6.3E-05 2.1E-09 64.6 1.5 33 39-71 15-47 (115)
103 2ecn_A Ring finger protein 141 97.3 8.3E-05 2.8E-09 57.9 2.0 50 38-88 14-63 (70)
104 2ecy_A TNF receptor-associated 97.3 0.00022 7.6E-09 54.9 4.4 53 98-155 13-65 (66)
105 2f42_A STIP1 homology and U-bo 97.3 0.00015 5.3E-09 67.6 4.2 55 98-157 104-158 (179)
106 2ysl_A Tripartite motif-contai 97.3 0.00028 9.7E-09 55.1 4.8 54 98-155 18-72 (73)
107 3htk_C E3 SUMO-protein ligase 97.2 0.00029 1E-08 69.3 5.6 91 60-157 143-237 (267)
108 3ztg_A E3 ubiquitin-protein li 97.2 0.00046 1.6E-08 56.5 5.9 51 98-151 11-61 (92)
109 2yur_A Retinoblastoma-binding 97.1 0.00022 7.7E-09 56.3 3.2 56 98-156 13-68 (74)
110 2ect_A Ring finger protein 126 97.1 0.0002 6.8E-09 56.9 2.5 57 98-157 13-69 (78)
111 2c2l_A CHIP, carboxy terminus 97.0 0.00026 8.9E-09 69.2 3.2 54 99-157 207-260 (281)
112 3dpl_R Ring-box protein 1; ubi 97.0 0.00045 1.5E-08 59.0 4.2 47 39-85 37-101 (106)
113 2ecm_A Ring finger and CHY zin 97.0 0.00036 1.2E-08 51.4 2.9 51 99-151 4-54 (55)
114 1x4j_A Ring finger protein 38; 97.0 0.001 3.6E-08 52.4 5.6 67 84-153 5-73 (75)
115 2ea6_A Ring finger protein 4; 97.0 0.00031 1.1E-08 54.0 2.3 53 98-152 13-68 (69)
116 2y43_A E3 ubiquitin-protein li 96.9 0.00061 2.1E-08 56.7 4.2 53 99-156 21-73 (99)
117 2ecv_A Tripartite motif-contai 96.9 0.00043 1.5E-08 55.3 3.0 56 98-157 17-76 (85)
118 2ckl_B Ubiquitin ligase protei 96.9 0.00071 2.4E-08 61.7 4.6 53 99-155 53-105 (165)
119 2egp_A Tripartite motif-contai 96.8 0.00036 1.2E-08 55.3 1.7 55 98-156 10-69 (79)
120 2d8t_A Dactylidin, ring finger 96.8 0.00042 1.5E-08 54.1 1.8 53 98-156 13-65 (71)
121 3lrq_A E3 ubiquitin-protein li 96.7 0.00096 3.3E-08 55.9 3.7 55 99-157 21-75 (100)
122 2csy_A Zinc finger protein 183 96.7 0.00098 3.3E-08 53.3 3.6 48 98-151 13-60 (81)
123 2ckl_A Polycomb group ring fin 96.7 0.0017 5.9E-08 54.9 5.1 50 99-153 14-63 (108)
124 2vje_A E3 ubiquitin-protein li 96.7 0.0018 6.3E-08 49.8 4.8 52 39-92 8-62 (64)
125 1jm7_A BRCA1, breast cancer ty 96.6 0.00065 2.2E-08 57.5 2.1 55 99-157 20-75 (112)
126 1iym_A EL5; ring-H2 finger, ub 96.6 0.001 3.5E-08 49.0 2.7 51 99-151 4-54 (55)
127 2vje_B MDM4 protein; proto-onc 96.6 0.0023 7.8E-08 49.1 4.6 51 39-91 7-60 (63)
128 4a0k_B E3 ubiquitin-protein li 96.6 0.00031 1E-08 61.2 -0.5 47 40-86 49-113 (117)
129 2ecn_A Ring finger protein 141 96.6 0.00073 2.5E-08 52.4 1.7 53 98-157 13-65 (70)
130 3hct_A TNF receptor-associated 96.5 0.0017 5.7E-08 56.0 3.8 56 96-156 14-69 (118)
131 2ep4_A Ring finger protein 24; 96.5 0.0026 8.8E-08 49.8 4.5 51 99-152 14-64 (74)
132 2l0b_A E3 ubiquitin-protein li 96.5 0.0043 1.5E-07 51.0 5.9 52 98-152 38-89 (91)
133 1e4u_A Transcriptional repress 96.4 0.0014 4.8E-08 52.8 2.7 54 39-92 11-69 (78)
134 2kiz_A E3 ubiquitin-protein li 96.4 0.0026 8.9E-08 49.1 4.1 52 98-152 12-63 (69)
135 3fl2_A E3 ubiquitin-protein li 96.4 0.0027 9.2E-08 55.0 4.3 50 99-153 51-100 (124)
136 1bor_A Transcription factor PM 96.3 0.00076 2.6E-08 50.4 0.6 45 39-86 6-50 (56)
137 1z6u_A NP95-like ring finger p 96.3 0.0027 9.3E-08 57.3 4.0 51 99-154 77-127 (150)
138 2ysj_A Tripartite motif-contai 96.2 0.0048 1.6E-07 46.7 4.5 45 98-146 18-63 (63)
139 4ayc_A E3 ubiquitin-protein li 96.1 0.0037 1.2E-07 55.4 3.9 47 100-152 53-99 (138)
140 1v87_A Deltex protein 2; ring- 96.1 0.0064 2.2E-07 51.6 5.1 62 100-163 25-103 (114)
141 4ic3_A E3 ubiquitin-protein li 96.0 0.0022 7.6E-08 50.7 1.8 42 39-84 24-66 (74)
142 1rmd_A RAG1; V(D)J recombinati 96.0 0.0037 1.3E-07 53.4 3.2 53 99-156 22-74 (116)
143 1jm7_B BARD1, BRCA1-associated 95.9 0.0011 3.7E-08 57.1 -0.4 50 100-156 22-71 (117)
144 2ecg_A Baculoviral IAP repeat- 95.8 0.0066 2.3E-07 47.9 3.9 43 39-85 25-68 (75)
145 1e4u_A Transcriptional repress 95.8 0.0039 1.3E-07 50.1 2.4 56 98-156 9-66 (78)
146 1chc_A Equine herpes virus-1 r 95.8 0.0076 2.6E-07 46.1 3.9 48 99-151 4-51 (68)
147 3hcs_A TNF receptor-associated 95.7 0.0077 2.6E-07 55.0 4.2 60 92-156 10-69 (170)
148 2d8s_A Cellular modulator of i 95.5 0.026 8.9E-07 45.5 6.4 50 38-87 14-72 (80)
149 2vje_B MDM4 protein; proto-onc 95.4 0.013 4.3E-07 44.9 4.0 54 99-158 6-60 (63)
150 2ecj_A Tripartite motif-contai 95.3 0.009 3.1E-07 44.1 2.8 45 98-146 13-58 (58)
151 2y1n_A E3 ubiquitin-protein li 95.3 0.0077 2.6E-07 62.5 3.2 55 100-159 332-386 (389)
152 3l11_A E3 ubiquitin-protein li 95.2 0.0048 1.6E-07 52.6 1.1 49 99-152 14-62 (115)
153 2vje_A E3 ubiquitin-protein li 95.2 0.013 4.5E-07 44.9 3.5 54 99-158 7-61 (64)
154 3knv_A TNF receptor-associated 95.1 0.0041 1.4E-07 55.5 0.2 52 98-154 29-80 (141)
155 1wim_A KIAA0161 protein; ring 95.0 0.0089 3E-07 49.2 2.1 50 99-149 4-61 (94)
156 2ecg_A Baculoviral IAP repeat- 94.9 0.0075 2.6E-07 47.6 1.3 45 99-153 24-69 (75)
157 2ecl_A Ring-box protein 2; RNF 94.7 0.012 4.1E-07 47.2 2.0 51 102-154 17-78 (81)
158 2yho_A E3 ubiquitin-protein li 94.6 0.015 5.1E-07 46.7 2.4 59 100-170 18-77 (79)
159 1wim_A KIAA0161 protein; ring 94.5 0.0071 2.4E-07 49.8 0.3 34 39-72 5-41 (94)
160 2ea5_A Cell growth regulator w 94.2 0.07 2.4E-06 41.4 5.4 45 37-85 13-58 (68)
161 3t6p_A Baculoviral IAP repeat- 94.2 0.013 4.3E-07 60.1 1.4 42 39-84 295-337 (345)
162 2ea5_A Cell growth regulator w 93.9 0.027 9.2E-07 43.8 2.5 52 98-161 13-65 (68)
163 1bor_A Transcription factor PM 93.2 0.012 4.1E-07 43.8 -0.6 46 98-152 4-49 (56)
164 2yho_A E3 ubiquitin-protein li 93.2 0.031 1.1E-06 44.7 1.8 42 39-84 18-60 (79)
165 4ic3_A E3 ubiquitin-protein li 92.9 0.023 8E-07 44.7 0.5 44 99-152 23-67 (74)
166 3vk6_A E3 ubiquitin-protein li 92.3 0.097 3.3E-06 44.0 3.6 51 102-156 3-53 (101)
167 3vk6_A E3 ubiquitin-protein li 91.8 0.25 8.6E-06 41.4 5.5 60 40-105 2-63 (101)
168 3i2d_A E3 SUMO-protein ligase 91.4 0.13 4.3E-06 53.0 4.1 54 101-157 250-305 (371)
169 3dpl_R Ring-box protein 1; ubi 89.9 0.29 9.8E-06 41.4 4.3 50 100-151 37-100 (106)
170 4fo9_A E3 SUMO-protein ligase 89.7 0.24 8.1E-06 50.8 4.3 54 101-157 216-271 (360)
171 2ct0_A Non-SMC element 1 homol 89.6 0.46 1.6E-05 37.6 5.0 47 38-84 14-63 (74)
172 2xjy_A Rhombotin-2; oncoprotei 88.7 0.79 2.7E-05 39.4 6.4 91 40-135 30-127 (131)
173 1b8t_A Protein (CRP1); LIM dom 88.4 1.5 5E-05 40.5 8.4 99 41-149 36-184 (192)
174 3i2d_A E3 SUMO-protein ligase 88.3 0.39 1.3E-05 49.4 4.6 48 40-112 250-300 (371)
175 3t6p_A Baculoviral IAP repeat- 88.1 0.12 4E-06 52.9 0.6 44 99-152 294-338 (345)
176 3k1l_B Fancl; UBC, ring, RWD, 85.8 0.18 6.3E-06 51.4 0.6 45 40-84 309-372 (381)
177 3kop_A Uncharacterized protein 85.7 3.1 0.00011 38.4 8.6 22 349-370 34-55 (188)
178 1rut_X Flinc4, fusion protein 85.6 0.43 1.5E-05 44.1 3.0 112 41-161 34-156 (188)
179 4fo9_A E3 SUMO-protein ligase 85.5 0.71 2.4E-05 47.3 4.8 47 41-112 217-266 (360)
180 2d8s_A Cellular modulator of i 85.3 0.56 1.9E-05 37.5 3.2 55 98-154 13-72 (80)
181 2rgt_A Fusion of LIM/homeobox 82.6 4.7 0.00016 36.2 8.6 91 40-136 34-128 (169)
182 4a0k_B E3 ubiquitin-protein li 80.5 0.33 1.1E-05 41.9 0.0 50 101-152 49-112 (117)
183 2jtn_A LIM domain-binding prot 79.6 4.6 0.00016 36.7 7.5 89 41-135 89-181 (182)
184 2nnz_A Hypothetical protein; b 79.4 5 0.00017 36.1 7.4 30 339-370 32-61 (153)
185 1vd4_A Transcription initiatio 76.3 1.1 3.9E-05 32.9 1.9 42 98-154 12-53 (62)
186 2ct0_A Non-SMC element 1 homol 75.5 2.5 8.4E-05 33.4 3.7 51 99-152 14-64 (74)
187 2kkx_A Uncharacterized protein 72.9 4.2 0.00014 33.9 4.6 53 39-91 27-85 (102)
188 2dlq_A GLI-kruppel family memb 71.5 1.8 6.2E-05 35.5 2.2 79 63-153 20-107 (124)
189 4gzn_C ZFP-57, zinc finger pro 70.5 2.7 9.2E-05 31.3 2.7 44 98-153 2-45 (60)
190 2lv2_A Insulinoma-associated p 70.1 1.3 4.3E-05 35.7 0.8 44 99-154 27-70 (85)
191 3m62_A Ubiquitin conjugation f 69.9 3.1 0.00011 47.7 4.3 54 98-157 889-943 (968)
192 1vyx_A ORF K3, K3RING; zinc-bi 69.6 3.6 0.00012 30.9 3.2 47 39-85 6-59 (60)
193 2k5c_A Uncharacterized protein 65.5 0.43 1.5E-05 38.4 -2.7 39 75-113 10-64 (95)
194 3uk3_C Zinc finger protein 217 64.6 3 0.0001 29.3 1.8 43 99-153 3-45 (57)
195 1x6e_A Zinc finger protein 24; 64.0 4.3 0.00015 30.2 2.7 44 98-153 12-55 (72)
196 6rxn_A Rubredoxin; electron tr 63.0 2.6 8.9E-05 30.3 1.2 12 138-149 28-39 (46)
197 2cs3_A Protein C14ORF4, MY039 62.8 9.7 0.00033 30.6 4.6 36 39-74 15-54 (93)
198 2eps_A POZ-, at HOOK-, and zin 59.6 7.7 0.00026 27.2 3.3 44 98-152 10-53 (54)
199 2xqn_T Testin, TESS; metal-bin 58.8 26 0.0009 29.3 7.2 71 74-154 4-77 (126)
200 2ctu_A Zinc finger protein 483 58.6 1.7 5.9E-05 32.0 -0.4 40 98-156 16-55 (73)
201 2drp_A Protein (tramtrack DNA- 58.4 6 0.0002 28.6 2.6 45 98-153 8-53 (66)
202 2lce_A B-cell lymphoma 6 prote 57.8 5.1 0.00017 29.9 2.2 44 98-153 15-58 (74)
203 1bbo_A Human enhancer-binding 57.7 4.5 0.00015 28.3 1.7 41 101-153 2-42 (57)
204 2ctd_A Zinc finger protein 512 57.4 7.6 0.00026 31.3 3.3 43 98-153 32-75 (96)
205 1x5w_A Zinc finger protein 64, 56.4 5.7 0.00019 29.3 2.2 43 98-154 7-51 (70)
206 2lt7_A Transcriptional regulat 55.9 11 0.00037 32.4 4.3 28 86-113 8-35 (133)
207 1f2i_G Fusion of N-terminal 17 55.2 6 0.00021 29.2 2.2 46 97-154 16-63 (73)
208 1m3v_A FLIN4, fusion of the LI 55.0 11 0.00038 31.9 4.1 80 74-160 6-89 (122)
209 2rgt_A Fusion of LIM/homeobox 53.6 28 0.00096 31.0 6.8 72 74-156 7-81 (169)
210 2xqn_T Testin, TESS; metal-bin 52.7 42 0.0014 28.0 7.5 86 40-131 31-121 (126)
211 3nw0_A Non-structural maintena 50.7 9.4 0.00032 36.7 3.3 59 99-161 179-237 (238)
212 3mjh_B Early endosome antigen 50.6 5 0.00017 27.0 0.9 13 101-113 6-18 (34)
213 2adr_A ADR1; transcription reg 50.5 5.9 0.0002 28.0 1.4 43 100-154 2-44 (60)
214 2gqj_A Zinc finger protein KIA 50.0 5.8 0.0002 31.7 1.4 45 98-154 22-68 (98)
215 1yuz_A Nigerythrin; rubrythrin 48.6 5.9 0.0002 37.1 1.4 9 141-149 187-195 (202)
216 2d9h_A Zinc finger protein 692 48.3 9.9 0.00034 28.5 2.5 48 98-154 5-52 (78)
217 1vyx_A ORF K3, K3RING; zinc-bi 47.5 16 0.00054 27.2 3.4 50 98-151 4-58 (60)
218 1ubd_C Protein (YY1 zinc finge 45.1 26 0.00089 28.4 4.8 17 138-154 90-108 (124)
219 2dmd_A Zinc finger protein 64, 45.1 5.2 0.00018 31.2 0.4 42 100-153 36-77 (96)
220 2yt9_A Zinc finger-containing 44.8 14 0.00048 28.5 2.9 15 98-112 5-19 (95)
221 2epr_A POZ-, at HOOK-, and zin 44.2 12 0.00042 25.2 2.2 39 98-148 10-48 (48)
222 1m3v_A FLIN4, fusion of the LI 43.3 13 0.00045 31.3 2.7 49 41-89 34-85 (122)
223 2ee8_A Protein ODD-skipped-rel 43.3 17 0.00057 28.8 3.2 44 98-153 15-58 (106)
224 3nw0_A Non-structural maintena 42.5 20 0.00067 34.4 4.1 46 39-84 180-228 (238)
225 2jtn_A LIM domain-binding prot 42.1 30 0.001 31.2 5.1 72 74-156 61-135 (182)
226 2cot_A Zinc finger protein 435 42.0 9 0.00031 28.7 1.3 43 98-154 16-60 (77)
227 2ct1_A Transcriptional repress 41.7 7.9 0.00027 29.0 0.9 46 98-154 13-59 (77)
228 1llm_C Chimera of ZIF23-GCN4; 41.6 15 0.00051 28.2 2.6 42 100-153 3-44 (88)
229 2cup_A Skeletal muscle LIM-pro 39.3 33 0.0011 27.4 4.5 74 74-157 6-84 (101)
230 2kmk_A Zinc finger protein GFI 39.0 18 0.00062 26.8 2.6 42 100-153 29-70 (82)
231 2dlq_A GLI-kruppel family memb 37.1 22 0.00076 28.6 3.1 15 98-112 5-19 (124)
232 1a1h_A QGSR zinc finger peptid 36.8 21 0.00071 27.1 2.7 42 100-153 34-75 (90)
233 2v3b_B Rubredoxin 2, rubredoxi 35.8 7 0.00024 29.0 -0.2 12 138-149 34-45 (55)
234 2wbt_A B-129; zinc finger; 2.7 35.5 28 0.00095 28.6 3.5 41 98-153 72-113 (129)
235 2kn9_A Rubredoxin; metalloprot 33.9 7 0.00024 31.4 -0.5 19 138-158 58-76 (81)
236 1s24_A Rubredoxin 2; electron 32.6 7.1 0.00024 31.8 -0.7 19 138-158 66-84 (87)
237 1dx8_A Rubredoxin; electron tr 32.2 8.6 0.0003 30.0 -0.3 19 138-158 38-56 (70)
238 2epq_A POZ-, at HOOK-, and zin 31.5 36 0.0012 22.2 2.9 16 98-113 8-23 (45)
239 2dlk_A Novel protein; ZF-C2H2 30.9 33 0.0011 25.3 3.0 40 100-151 38-79 (79)
240 2xjy_A Rhombotin-2; oncoprotei 30.6 87 0.003 26.1 5.9 73 75-154 4-80 (131)
241 2csh_A Zinc finger protein 297 30.5 19 0.00066 28.7 1.6 40 100-153 37-78 (110)
242 1x6h_A Transcriptional repress 29.5 32 0.0011 25.7 2.7 46 98-154 13-61 (86)
243 1wjp_A Zinc finger protein 295 29.0 29 0.00098 27.6 2.4 43 98-154 14-56 (107)
244 2lo3_A SAGA-associated factor 28.5 48 0.0016 23.3 3.0 29 47-75 9-41 (44)
245 1lko_A Rubrerythrin all-iron(I 28.2 15 0.00051 33.9 0.6 13 99-111 154-166 (191)
246 2dlo_A Thyroid receptor-intera 28.2 26 0.00088 27.0 1.9 70 57-135 2-74 (81)
247 2m0e_A Zinc finger and BTB dom 26.2 34 0.0012 19.3 1.8 14 140-153 2-15 (29)
248 2rpc_A Zinc finger protein ZIC 25.5 35 0.0012 28.9 2.5 16 138-153 118-135 (155)
249 1p7a_A BF3, BKLF, kruppel-like 25.3 32 0.0011 21.2 1.7 16 138-153 9-24 (37)
250 2dmi_A Teashirt homolog 3; zin 25.2 1.1E+02 0.0039 24.0 5.5 15 139-153 79-93 (115)
251 1a7i_A QCRP2 (LIM1); LIM domai 25.1 1.1E+02 0.0039 23.1 5.2 65 73-147 7-74 (81)
252 2en6_A Zinc finger protein 268 24.8 60 0.002 21.1 3.1 16 98-113 10-25 (46)
253 1ard_A Yeast transcription fac 24.4 33 0.0011 19.5 1.5 14 140-153 2-15 (29)
254 4rxn_A Rubredoxin; electron tr 24.4 33 0.0011 25.3 1.7 19 138-158 34-52 (54)
255 1b8t_A Protein (CRP1); LIM dom 24.3 1.3E+02 0.0045 27.0 6.3 56 75-136 9-67 (192)
256 2ytk_A Zinc finger protein 347 24.1 59 0.002 21.1 3.0 16 98-113 10-25 (46)
257 2ghf_A ZHX1, zinc fingers and 24.1 19 0.00065 29.6 0.4 46 98-154 16-64 (102)
258 2yso_A ZFP-95, zinc finger pro 23.3 62 0.0021 21.0 3.0 16 98-113 10-25 (46)
259 2khf_A PLNJ; anti-microbial, b 22.9 27 0.00092 21.3 0.8 16 364-379 4-19 (26)
260 2emh_A Zinc finger protein 484 22.8 66 0.0023 20.9 3.0 16 98-113 10-25 (46)
261 2lvu_A Zinc finger and BTB dom 28.4 18 0.00061 20.4 0.0 14 101-114 3-16 (26)
262 2epa_A Krueppel-like factor 10 22.4 54 0.0018 23.7 2.7 45 98-154 15-63 (72)
263 1j2o_A FLIN2, fusion of rhombo 22.3 66 0.0023 26.5 3.5 44 41-84 32-78 (114)
264 2l3k_A Rhombotin-2, linker, LI 22.2 1.3E+02 0.0046 24.9 5.5 79 75-162 10-92 (123)
265 2eoo_A ZFP-95, zinc finger pro 22.1 73 0.0025 20.7 3.1 16 98-113 10-25 (46)
266 2ytd_A Zinc finger protein 473 22.0 71 0.0024 20.7 3.1 16 98-113 10-25 (46)
267 2jr6_A UPF0434 protein NMA0874 21.9 34 0.0012 26.4 1.4 17 142-158 28-44 (68)
268 2hf1_A Tetraacyldisaccharide-1 21.7 35 0.0012 26.3 1.5 18 141-158 27-44 (68)
269 1klr_A Zinc finger Y-chromosom 21.6 44 0.0015 18.9 1.7 14 140-153 2-15 (30)
270 2ej4_A Zinc finger protein ZIC 21.5 68 0.0023 24.4 3.3 24 90-113 15-38 (95)
271 2eod_A TNF receptor-associated 21.5 39 0.0013 24.3 1.7 41 99-153 9-50 (66)
272 1rut_X Flinc4, fusion protein 21.5 1.1E+02 0.0039 27.4 5.2 74 74-154 6-83 (188)
273 2emm_A ZFP-95, zinc finger pro 21.4 75 0.0026 20.5 3.1 16 98-113 10-25 (46)
274 2m0f_A Zinc finger and BTB dom 21.3 32 0.0011 19.5 1.0 13 100-112 2-14 (29)
275 2em8_A Zinc finger protein 224 21.1 72 0.0024 20.8 2.9 16 98-113 10-25 (46)
276 2emp_A Zinc finger protein 347 21.1 73 0.0025 20.6 3.0 16 98-113 10-25 (46)
277 2emy_A Zinc finger protein 268 21.1 76 0.0026 20.5 3.0 16 98-113 10-25 (46)
278 2ebt_A Krueppel-like factor 5; 20.7 74 0.0025 24.3 3.4 42 100-153 45-88 (100)
279 2jun_A Midline-1; B-BOX, TRIM, 20.6 67 0.0023 25.6 3.1 77 41-132 5-87 (101)
280 2elr_A Zinc finger protein 406 20.3 46 0.0016 20.2 1.7 15 139-153 8-22 (36)
281 1paa_A Yeast transcription fac 20.2 47 0.0016 19.0 1.6 15 140-154 2-16 (30)
282 2emx_A Zinc finger protein 268 20.1 83 0.0029 20.1 3.1 16 98-113 8-23 (44)
No 1
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=9.2e-43 Score=322.85 Aligned_cols=135 Identities=31% Similarity=0.397 Sum_probs=129.5
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCc
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHS 414 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~ 414 (504)
++.|.| +|+.|+|+||||++.||+||+||+.||+.|||+|+. |||++|+ |||||||.++|.|++++||.+
T Consensus 5 ~~~v~~--~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------fhRvi~~f~iQgGd~~~~g~gg~si~g~~ 75 (160)
T 2fu0_A 5 PKSAII--YTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCI-------FHRVIKHFMVQTGDPSGDGTGGESIWGNE 75 (160)
T ss_dssp CCEEEE--EETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCB-------CCEEETTTEEEECCTTSSSSCCCCTTSSC
T ss_pred CCEEEE--EecCccEEEEEeCCCChHHHHHHHHHhccCccCCCE-------EEEEECCCEEEeCCcCCCCCCCCcccCCC
Confidence 345888 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccH
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGM 494 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~Gm 494 (504)
|+||+.+.++|+++|+|||||+|||+++|||||+++++++||++|+|||+|++||
T Consensus 76 -------------------------~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~ 130 (160)
T 2fu0_A 76 -------------------------FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130 (160)
T ss_dssp -------------------------BCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred -------------------------ccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCH
Confidence 9999977899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q psy3664 495 DTLSAIEKVE 504 (504)
Q Consensus 495 dvL~kI~~~~ 504 (504)
|||++|++++
T Consensus 131 dvv~~I~~~~ 140 (160)
T 2fu0_A 131 KIVLDIEKVR 140 (160)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHhCC
Confidence 9999999874
No 2
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=1.1e-42 Score=324.24 Aligned_cols=136 Identities=29% Similarity=0.485 Sum_probs=130.5
Q ss_pred CCCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccC
Q psy3664 335 KDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTH 413 (504)
Q Consensus 335 ~~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~ 413 (504)
.++.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+|+ |||||||+++|.||+++||.
T Consensus 10 ~~~~v~l--~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------fhRvi~~f~iQgGd~~~~g~gg~si~g~ 80 (166)
T 2x7k_A 10 QPPNVYL--ETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTK-------FHRIIKDFMIQGGDPTGTGRGGASIYGK 80 (166)
T ss_dssp CCSEEEE--EETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEE-------CCEEETTTEEEECCTTSSSSCCCCTTSS
T ss_pred CCCEEEE--EeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCE-------EEEEECCCEEEcCCCCCCCCCCCccCCC
Confidence 3456888 999999999999999999999999999999999999 9999999 99999999999999999998
Q ss_pred ccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEcc
Q psy3664 414 SRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGG 493 (504)
Q Consensus 414 ~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~G 493 (504)
. |+||+.+.++|.++|+|||||+|||+|+|||||+++++++||++|+|||+|++|
T Consensus 81 ~-------------------------~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G 135 (166)
T 2x7k_A 81 Q-------------------------FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135 (166)
T ss_dssp C-------------------------BCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEEC
T ss_pred c-------------------------cccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcC
Confidence 8 999987899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q psy3664 494 MDTLSAIEKVE 504 (504)
Q Consensus 494 mdvL~kI~~~~ 504 (504)
||||++|++++
T Consensus 136 ~dvv~~I~~~~ 146 (166)
T 2x7k_A 136 IGMVNRVGMVE 146 (166)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHcCC
Confidence 99999999874
No 3
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=2.9e-42 Score=319.93 Aligned_cols=132 Identities=33% Similarity=0.472 Sum_probs=128.0
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. |||++++ |||||||.++|.||+++||..
T Consensus 3 v~~--~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------fhRvi~~f~iQgGd~~~~g~gg~si~g~~--- 70 (161)
T 2ok3_A 3 VTL--HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI-------FHRNIKGFMVQTGDPTGTGRGGNSIWGKK--- 70 (161)
T ss_dssp EEE--EETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCB-------CCEEETTTEEEECCTTSSSSCCCCTTSSC---
T ss_pred EEE--EeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCE-------EEEEECCCEEecCCCCCCCCCCCcccCCc---
Confidence 677 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTL 497 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL 497 (504)
|+||+.+.++|+++|+|||||+|||+|+|||||+++++++||++|+|||+|++|||||
T Consensus 71 ----------------------~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv 128 (161)
T 2ok3_A 71 ----------------------FEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128 (161)
T ss_dssp ----------------------BCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHH
T ss_pred ----------------------cccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHH
Confidence 9999878899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q psy3664 498 SAIEKVE 504 (504)
Q Consensus 498 ~kI~~~~ 504 (504)
++|++++
T Consensus 129 ~~I~~~~ 135 (161)
T 2ok3_A 129 DELEKLP 135 (161)
T ss_dssp HHHHTCC
T ss_pred HHHHhCC
Confidence 9999874
No 4
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=3.4e-42 Score=328.33 Aligned_cols=132 Identities=43% Similarity=0.660 Sum_probs=128.5
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ |||||||+++|.||+++||.+
T Consensus 22 v~l--~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~-------FhRVi~~f~iQgGd~~~~g~Gg~si~g~~--- 89 (197)
T 1zkc_A 22 VRL--HTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTI-------FHRSIRNFVIQGGDPTGTGTGGESYWGKP--- 89 (197)
T ss_dssp EEE--EETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEE-------EEEEETTTEEEECCTTSSSSCCCBTTBSC---
T ss_pred EEE--EeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCE-------EEEEeCCCEEEcCCCCCCCCCCCccCCCc---
Confidence 888 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHHH
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTL 497 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~GmdvL 497 (504)
|+||+.+.+.|+.+|+|||||+|||+|+|||||+++++++||++|+|||+|++|||||
T Consensus 90 ----------------------f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv 147 (197)
T 1zkc_A 90 ----------------------FKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVL 147 (197)
T ss_dssp ----------------------BCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHH
T ss_pred ----------------------cccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHH
Confidence 9999878999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q psy3664 498 SAIEKVE 504 (504)
Q Consensus 498 ~kI~~~~ 504 (504)
++|++++
T Consensus 148 ~~I~~~~ 154 (197)
T 1zkc_A 148 TAMENVE 154 (197)
T ss_dssp HHHHHSC
T ss_pred HHHHcCC
Confidence 9999874
No 5
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=4.4e-42 Score=322.76 Aligned_cols=133 Identities=30% Similarity=0.387 Sum_probs=128.5
Q ss_pred ceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCccc
Q psy3664 338 ESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSRE 416 (504)
Q Consensus 338 ~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~ 416 (504)
.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ |||||||.++|.||+++||..
T Consensus 23 ~v~~--~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------FhRvi~~f~iQgGd~~~~g~gg~si~g~~-- 91 (176)
T 2a2n_A 23 SAII--HTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHT-------FHRIIKGFMIQTGDPTGTGMGGESIWGGE-- 91 (176)
T ss_dssp EEEE--EETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCB-------CCEEETTTEEEECCTTSSSSCCCCTTSSC--
T ss_pred EEEE--EecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCE-------EEEEECCcEEEccCCCCCCCCCCcccCCc--
Confidence 3778 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred cccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHHH
Q psy3664 417 NTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDT 496 (504)
Q Consensus 417 ~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~Gmdv 496 (504)
|+||+.+.++|+++|+|||||+|||+|+|||||++++++|||++|+|||+|++||||
T Consensus 92 -----------------------~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdv 148 (176)
T 2a2n_A 92 -----------------------FEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEV 148 (176)
T ss_dssp -----------------------BCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred -----------------------cccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHH
Confidence 999997789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q psy3664 497 LSAIEKVE 504 (504)
Q Consensus 497 L~kI~~~~ 504 (504)
|++|++++
T Consensus 149 v~~I~~~~ 156 (176)
T 2a2n_A 149 VQRISNVK 156 (176)
T ss_dssp HHHHHTSC
T ss_pred HHHHHcCC
Confidence 99999874
No 6
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=5.9e-42 Score=326.58 Aligned_cols=135 Identities=27% Similarity=0.374 Sum_probs=130.2
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCc
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHS 414 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~ 414 (504)
.+.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+|+ |||||||+++|.||+++||.+
T Consensus 38 ~~~V~l--~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~-------FhRVi~~f~iQgGd~~~~g~gg~si~g~~ 108 (196)
T 2b71_A 38 RGYITI--YTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTI-------FHRVIPNFVIQGGDPTGTGKGGKSIYGEY 108 (196)
T ss_dssp SCEEEE--EETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEE-------EEEEETTTEEEEEETTSSSSCCCBTTBSC
T ss_pred CcEEEE--EeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCE-------EEEEeCCcEEEcCCCCCCCCCCCccCCCc
Confidence 466888 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccH
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGM 494 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~Gm 494 (504)
|+||+.+.++|+++|+|||||+|||+++|||||++++++|||++|+|||+|++||
T Consensus 109 -------------------------~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gm 163 (196)
T 2b71_A 109 -------------------------FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163 (196)
T ss_dssp -------------------------BCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred -------------------------ccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCH
Confidence 9999878999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q psy3664 495 DTLSAIEKVE 504 (504)
Q Consensus 495 dvL~kI~~~~ 504 (504)
|||++|++++
T Consensus 164 dvv~~I~~~~ 173 (196)
T 2b71_A 164 TCIENIASVQ 173 (196)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHhCC
Confidence 9999999874
No 7
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=9e-42 Score=323.04 Aligned_cols=135 Identities=27% Similarity=0.417 Sum_probs=129.6
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCc
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHS 414 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~ 414 (504)
.+.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ |||||||+++|.||+++||.+
T Consensus 16 ~~~v~i--~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------FhRvi~~f~iQgGd~~~~g~gg~si~g~~ 86 (185)
T 2poe_A 16 FQGVRI--ITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTI-------FHKNIKGFIIQGGDPTGTGKGGESIYGRY 86 (185)
T ss_dssp CCEEEE--EETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEE-------EEEECTTSEEEEEETTSSSSCCCBTTBSC
T ss_pred ceEEEE--EecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCE-------EEEEECCCEEEcCCCCCCCCCCCccCCCc
Confidence 345888 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCC----CCCCCccEEEEcCCCCCCCCCCcEEEEE
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG----PNTNTSQFFITYRSCNHLDGKHTVFGKM 490 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansg----pns~~SQFfItl~~~~~LD~k~tvFG~V 490 (504)
|+||+.+.++|+++|+|||||+| ||+|+|||||+++++++||++|+|||+|
T Consensus 87 -------------------------~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~V 141 (185)
T 2poe_A 87 -------------------------FDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKL 141 (185)
T ss_dssp -------------------------BCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEE
T ss_pred -------------------------ccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEE
Confidence 99998889999999999999999 9999999999999999999999999999
Q ss_pred EccHHHHHHHhhCC
Q psy3664 491 VGGMDTLSAIEKVE 504 (504)
Q Consensus 491 v~GmdvL~kI~~~~ 504 (504)
++|||||++|++++
T Consensus 142 v~Gmdvv~~I~~~~ 155 (185)
T 2poe_A 142 IDGFETLNTLENCP 155 (185)
T ss_dssp EECHHHHHHHHHSC
T ss_pred eCCHHHHHHHHhCC
Confidence 99999999999864
No 8
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=8.4e-42 Score=327.43 Aligned_cols=139 Identities=30% Similarity=0.424 Sum_probs=120.7
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-ccccc-----CCCCCCCCCccccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKV-----DSKLSPMKHETFWT 412 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgG-----Dp~~~g~gg~s~~g 412 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ ||||| ||+++|.||+++|+
T Consensus 9 v~l--~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~-------FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~ 79 (201)
T 3bo7_A 9 LRI--VTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTI-------FHRCIRNFMIQGGRAELRQPSKKKEVQQSPRS 79 (201)
T ss_dssp EEE--EETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCB-------EEEEETTTEEEECCGGGCCC-------CCSSC
T ss_pred EEE--EeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCE-------EEEeeCCCEEEcCcccccCCCCCCCCCccccc
Confidence 888 999999999999999999999999999999999999 9999999 99999 99999999999993
Q ss_pred CccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEc
Q psy3664 413 HSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG 492 (504)
Q Consensus 413 ~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~ 492 (504)
... ......|+||+.+.++|+.+|+|||||+|||+++|||||++++++|||++|+|||+|++
T Consensus 80 ~~~------------------~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~ 141 (201)
T 3bo7_A 80 ISG------------------FPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVG 141 (201)
T ss_dssp CCS------------------STTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEE
T ss_pred ccc------------------ccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEec
Confidence 210 00112299998789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhCC
Q psy3664 493 GMDTLSAIEKVE 504 (504)
Q Consensus 493 GmdvL~kI~~~~ 504 (504)
|||||++|++++
T Consensus 142 Gmdvv~~I~~~~ 153 (201)
T 3bo7_A 142 GLDVLRQWEKLE 153 (201)
T ss_dssp CHHHHHHHTTCC
T ss_pred CHHHHHHHHhCC
Confidence 999999999874
No 9
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=323.49 Aligned_cols=135 Identities=30% Similarity=0.485 Sum_probs=130.0
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCc
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHS 414 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~ 414 (504)
++.|.| +|+.|+|+||||++.||+||+||+.||+.|||+|+. ||||+++ |||||||.++|.+++++|+..
T Consensus 11 ~~~V~l--~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~-------FhRVi~~F~iQgGd~~~~g~gg~si~g~~ 81 (203)
T 2k7n_A 11 PPNVYL--ETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTK-------FHRIIKDFMIQGGDPTGTGRGGASIYGKQ 81 (203)
T ss_dssp CSEEEE--EESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCE-------EEEEETTTEEEEECSSSSSSCCCTTSCSC
T ss_pred CCEEEE--EeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCE-------EEEEeCCcEEEcCCCCCCCCCCCccCCCc
Confidence 455888 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccH
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGM 494 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~Gm 494 (504)
|+||+.+.++|.++|+|||||++||+|+|||||++.+++|||++|+|||+|++||
T Consensus 82 -------------------------f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGm 136 (203)
T 2k7n_A 82 -------------------------FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136 (203)
T ss_dssp -------------------------BCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCH
T ss_pred -------------------------ccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCH
Confidence 9999878999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q psy3664 495 DTLSAIEKVE 504 (504)
Q Consensus 495 dvL~kI~~~~ 504 (504)
|||++|++++
T Consensus 137 dvv~kI~~~~ 146 (203)
T 2k7n_A 137 GMVNRVGMVE 146 (203)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHcCC
Confidence 9999999874
No 10
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=9.3e-41 Score=313.14 Aligned_cols=138 Identities=29% Similarity=0.371 Sum_probs=128.5
Q ss_pred cCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhh--ccC-CCCccccccceeEEEeeCC-cccccCCC-CCCC
Q psy3664 334 LKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVK--ADA-FNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPM 405 (504)
Q Consensus 334 ~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~ 405 (504)
..+|.|.|++. |+.|+|+|+||++.||+||+||+.||+ .|| |+|+. ||||+|+ ||||||++ ++|.
T Consensus 9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~g~ 81 (173)
T 2r99_A 9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSS-------FHRIIPQFMCQGGDFTNHNGT 81 (173)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCB-------EEEEETTTEEEECCTTTSSSS
T ss_pred cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCE-------EEEeeCCCEEEeCCcCCCCCC
Confidence 45677888763 899999999999999999999999995 788 99999 9999999 99999997 7899
Q ss_pred CCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCc
Q psy3664 406 KHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHT 485 (504)
Q Consensus 406 gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~t 485 (504)
||+++||.. |+||. ..++|+.+|+|||||+|||+|+||||||+.+++|||++|+
T Consensus 82 gg~si~g~~-------------------------f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~t 135 (173)
T 2r99_A 82 GGKSIYGKK-------------------------FDDEN-FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHV 135 (173)
T ss_dssp CCCBTTBSC-------------------------BCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSC
T ss_pred CCCccCCCc-------------------------ccCcc-cCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCee
Confidence 999999988 99996 7899999999999999999999999999999999999999
Q ss_pred EEEEEEccHHHHHHHhhCC
Q psy3664 486 VFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 486 vFG~Vv~GmdvL~kI~~~~ 504 (504)
|||+|++|||||++|++++
T Consensus 136 VFG~Vv~G~dvv~~I~~~~ 154 (173)
T 2r99_A 136 VFGEVTEGLDVLRQIEAQG 154 (173)
T ss_dssp EEEEEEECHHHHHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhCC
Confidence 9999999999999999864
No 11
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=8.3e-41 Score=315.07 Aligned_cols=138 Identities=25% Similarity=0.360 Sum_probs=129.2
Q ss_pred cCCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhh-----------ccCCCCccccccceeEEEeeCC-ccccc
Q psy3664 334 LKDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVK-----------ADAFNAAHYSQVWLVSSRKLRD-RIQKV 398 (504)
Q Consensus 334 ~~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~-----------~g~Y~g~~~s~~~~~fhRvi~~-~iQgG 398 (504)
..+|+|.|++ .|+.|+|+|+||++.||+||+||+.||+ .+||+|+. ||||+|+ |||||
T Consensus 7 ~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~-------FhRvi~~f~iQgG 79 (179)
T 2wfi_A 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL-------FHRVVKDFMVQGG 79 (179)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCB-------EEEEETTTEEEEC
T ss_pred CCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCE-------EEEEECCCEEEcc
Confidence 3477898887 5899999999999999999999999996 57899999 9999999 99999
Q ss_pred CCC-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCC
Q psy3664 399 DSK-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSC 477 (504)
Q Consensus 399 Dp~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~ 477 (504)
|++ ++|.|++++||.. |+||. ..++|+.+|+|||||+|||+|+||||||+.++
T Consensus 80 d~~~~~g~gg~si~g~~-------------------------f~dE~-~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~ 133 (179)
T 2wfi_A 80 DFSEGNGRGGESIYGGF-------------------------FEDES-FAVKHNKEFLLSMANRGKDTNGSQFFITTKPT 133 (179)
T ss_dssp CTTTSSSSCCCCTTSSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCC
T ss_pred cccCCCCCCCCcccCCc-------------------------ccccc-cCcCcCCCeEEEEEeCCCCCcceEEEEEcCCC
Confidence 996 8899999999988 99997 68999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 478 NHLDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 478 ~~LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
+|||++|+|||+|++|||||++|++++
T Consensus 134 ~~LDg~~tVFG~Vv~G~dvv~~I~~~~ 160 (179)
T 2wfi_A 134 PHLDGHHVVFGQVISGQEVVREIENQK 160 (179)
T ss_dssp GGGTTTSCEEEEEEECHHHHHHHHTCC
T ss_pred cccCCCeeEEEEEeCCHHHHHHHHcCC
Confidence 999999999999999999999999874
No 12
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=9.4e-41 Score=312.72 Aligned_cols=138 Identities=28% Similarity=0.396 Sum_probs=128.7
Q ss_pred cCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc--cC-CCCccccccceeEEEeeCC-cccccCCC-CCCC
Q psy3664 334 LKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA--DA-FNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPM 405 (504)
Q Consensus 334 ~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~ 405 (504)
..+|.|.|++. |+.|+|+|+||++.||+||+||+.||+. || |+|+. ||||+|+ ||||||+. ++|.
T Consensus 8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~G~ 80 (172)
T 2cmt_A 8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCC-------FHRVIPQFMCQGGDFVKGDGT 80 (172)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCB-------EEEEETTTEEEECCTTTSSSS
T ss_pred CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCE-------EEEEECCCEEEcCCccCCCCC
Confidence 45688998663 8999999999999999999999999984 88 99999 9999999 99999997 7899
Q ss_pred CCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCc
Q psy3664 406 KHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHT 485 (504)
Q Consensus 406 gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~t 485 (504)
||+++||.+ |+||. ..++|+++|+|||||+|||+|+|||||++++++|||++|+
T Consensus 81 gg~si~g~~-------------------------f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~t 134 (172)
T 2cmt_A 81 GGKSIYGRK-------------------------FDDEN-FQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHV 134 (172)
T ss_dssp CCCBTTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSC
T ss_pred CCCccCCCc-------------------------ccccc-cCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCee
Confidence 999999988 99997 6899999999999999999999999999999999999999
Q ss_pred EEEEEEccHHHHHHHhhCC
Q psy3664 486 VFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 486 vFG~Vv~GmdvL~kI~~~~ 504 (504)
|||+|++|||||++|++++
T Consensus 135 vFG~Vv~G~dvv~~I~~~~ 153 (172)
T 2cmt_A 135 VFGRVVDGQNVVKKMESVG 153 (172)
T ss_dssp EEEEEEECHHHHHHGGGGC
T ss_pred EEEEEEcCHHHHHHHHhCC
Confidence 9999999999999999864
No 13
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=8.6e-41 Score=314.45 Aligned_cols=137 Identities=29% Similarity=0.451 Sum_probs=128.8
Q ss_pred CCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhccC--------CCCccccccceeEEEeeCC-cccccCCC-
Q psy3664 335 KDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKADA--------FNAAHYSQVWLVSSRKLRD-RIQKVDSK- 401 (504)
Q Consensus 335 ~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~--------Y~g~~~s~~~~~fhRvi~~-~iQgGDp~- 401 (504)
.+|.|.|++. |+.|+|+||||++.||+||+||+.||+.+| |+|+. ||||+|+ ||||||+.
T Consensus 9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~-------FhRvi~~f~iQgGd~~~ 81 (177)
T 1mzw_A 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGST-------FHRVIKDFMIQGGDFVN 81 (177)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCB-------CCEEETTTEEEECCTTT
T ss_pred CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCE-------EEEEECCCEEEcCCccc
Confidence 4677999763 789999999999999999999999999998 88888 9999999 99999996
Q ss_pred CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCC
Q psy3664 402 LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLD 481 (504)
Q Consensus 402 ~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD 481 (504)
++|.||+++||.. |+||. ..++|+++|+|||||+|||+|+|||||++++++|||
T Consensus 82 ~~G~gg~si~g~~-------------------------f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LD 135 (177)
T 1mzw_A 82 GDGTGVASIYRGP-------------------------FADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLD 135 (177)
T ss_dssp SSSCCCCCTTSSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred CCCCCCCccCCCc-------------------------ccCcc-cccccCCCCEEEEccCCCCCcceEEEEECCCCCccC
Confidence 8899999999988 99997 689999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccHHHHHHHhhCC
Q psy3664 482 GKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 482 ~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
++|+|||+|++|||||++|++++
T Consensus 136 g~~~VFG~Vv~G~dvv~~I~~~~ 158 (177)
T 1mzw_A 136 GKHVVFGKIIDGLLVMRKIENVP 158 (177)
T ss_dssp TTSCEEEEEEECHHHHHHHHTSC
T ss_pred CCeeEEEEEeCCHHHHHHHHhCC
Confidence 99999999999999999999875
No 14
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=1e-40 Score=310.73 Aligned_cols=137 Identities=29% Similarity=0.394 Sum_probs=129.0
Q ss_pred CCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhh--ccC-CCCccccccceeEEEeeCC-cccccCCC-CCCCC
Q psy3664 335 KDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVK--ADA-FNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPMK 406 (504)
Q Consensus 335 ~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~g 406 (504)
.+|+|.|++ .|+.|+|+||||++.||+||+||+.||+ .|| |+|+. ||||+|+ ||||||++ ++|.|
T Consensus 2 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~-------fhRvi~~f~iQgGd~~~~~g~g 74 (165)
T 2z6w_A 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST-------FHRVIPSFMCQAGDFTNHNGTG 74 (165)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCB-------EEEEETTTEEEECCTTTSSSSC
T ss_pred CCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCE-------EEEEECCCEEEeCCccCCCCCC
Confidence 367788877 4789999999999999999999999999 999 99999 9999999 99999996 78999
Q ss_pred CcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcE
Q psy3664 407 HETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTV 486 (504)
Q Consensus 407 g~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tv 486 (504)
|+++||.. |+||. +.++|.++|+|||||+|||+|+|||||++++++|||++|+|
T Consensus 75 g~si~g~~-------------------------f~dE~-~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~v 128 (165)
T 2z6w_A 75 GKSIYGSR-------------------------FPDEN-FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVV 128 (165)
T ss_dssp CCBTTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCE
T ss_pred CCcccCCc-------------------------ccCcc-cccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeE
Confidence 99999988 99996 78999989999999999999999999999999999999999
Q ss_pred EEEEEccHHHHHHHhhCC
Q psy3664 487 FGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 487 FG~Vv~GmdvL~kI~~~~ 504 (504)
||+|++|||||++|++++
T Consensus 129 FG~Vv~G~dvv~~I~~~~ 146 (165)
T 2z6w_A 129 FGHVIEGMDVVKKIESFG 146 (165)
T ss_dssp EEEEEECHHHHHHHHHTC
T ss_pred EEEEEcCHHHHHHHHhCC
Confidence 999999999999999764
No 15
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=1.1e-40 Score=312.68 Aligned_cols=137 Identities=29% Similarity=0.433 Sum_probs=128.1
Q ss_pred CCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc--c--------CCCCccccccceeEEEeeCC-cccccCC
Q psy3664 335 KDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA--D--------AFNAAHYSQVWLVSSRKLRD-RIQKVDS 400 (504)
Q Consensus 335 ~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g--------~Y~g~~~s~~~~~fhRvi~~-~iQgGDp 400 (504)
.+|+|.|++. |+.|+|+||||++.||+||+||+.||+. | ||+|+. ||||+|+ ||||||+
T Consensus 2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~-------FhRvi~~f~iQgGd~ 74 (173)
T 2igv_A 2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSK-------FHRIIPNFMIQGGDF 74 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCB-------CCEEETTTEEEECCT
T ss_pred CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCE-------EEEEECCCEEEcCCC
Confidence 4678999763 6799999999999999999999999986 6 799999 9999999 9999999
Q ss_pred C-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCC
Q psy3664 401 K-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNH 479 (504)
Q Consensus 401 ~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~ 479 (504)
+ ++|.||+++||.+ |+||. ..++|+++|+|||||+|||+|+||||||+++++|
T Consensus 75 ~~~~G~gg~siyg~~-------------------------f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~ 128 (173)
T 2igv_A 75 TRGNGTGGESIYGEK-------------------------FPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEW 128 (173)
T ss_dssp TTSSSSCCCBTTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGG
T ss_pred CCCCCCCCCccCCCc-------------------------ccCcc-cccCCCCCeEEEEeeCCCCCcceEEEEEcCCccc
Confidence 6 7899999999988 99997 6899999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 480 LDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 480 LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
||++|+|||+|++|||||++|++++
T Consensus 129 LDg~~~vFG~Vv~G~dvv~~I~~~~ 153 (173)
T 2igv_A 129 LDGKHVVFGRVVEGLDVVKAVESNG 153 (173)
T ss_dssp GTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred cCCCeeEEEEEecCHHHHHHHHhCC
Confidence 9999999999999999999999864
No 16
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=1e-40 Score=312.30 Aligned_cols=137 Identities=29% Similarity=0.422 Sum_probs=128.3
Q ss_pred cCCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHh--hccC-CCCccccccceeEEEeeCC-cccccC-CCCCCC
Q psy3664 334 LKDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKV--KADA-FNAAHYSQVWLVSSRKLRD-RIQKVD-SKLSPM 405 (504)
Q Consensus 334 ~~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~--~~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGD-p~~~g~ 405 (504)
..+|+|.|++ .|+.|+|+||||++.||+||+||+.|| +.|| |+|+. ||||+|+ |||||| +.++|.
T Consensus 9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~g~ 81 (172)
T 2haq_A 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSI-------FHRVIQNFMIQGGDFTNFDGT 81 (172)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCB-------CCEEETTTEEEECCTTTSSSS
T ss_pred CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCE-------EEEEECCCEEecCCccCCCCC
Confidence 4456688777 589999999999999999999999999 7899 99999 9999999 999999 568899
Q ss_pred CCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCc
Q psy3664 406 KHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHT 485 (504)
Q Consensus 406 gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~t 485 (504)
||+++||.+ |+||. +.++|. +|+|||||+|||+|+||||||++++++||++|+
T Consensus 82 gg~si~g~~-------------------------f~dE~-~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~ 134 (172)
T 2haq_A 82 GGKSIYGEK-------------------------FADEN-LNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHV 134 (172)
T ss_dssp CCCCSSSSC-------------------------BCCCC-CCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSC
T ss_pred CCccccCCc-------------------------ccCcC-CCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEe
Confidence 999999988 99995 789998 999999999999999999999999999999999
Q ss_pred EEEEEEccHHHHHHHhhCC
Q psy3664 486 VFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 486 vFG~Vv~GmdvL~kI~~~~ 504 (504)
|||+|++|||||++|++++
T Consensus 135 vFG~Vv~G~dvv~~I~~~~ 153 (172)
T 2haq_A 135 VFGKVLDGMDVVLRIEKTK 153 (172)
T ss_dssp EEEEEEECHHHHHHHHTSC
T ss_pred EEEEEeCCHHHHHHHHhCC
Confidence 9999999999999999874
No 17
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=1.4e-40 Score=313.05 Aligned_cols=137 Identities=26% Similarity=0.322 Sum_probs=128.3
Q ss_pred CCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhhc--------c---CCCCccccccceeEEEeeCC-cccccC
Q psy3664 335 KDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVKA--------D---AFNAAHYSQVWLVSSRKLRD-RIQKVD 399 (504)
Q Consensus 335 ~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~~--------g---~Y~g~~~s~~~~~fhRvi~~-~iQgGD 399 (504)
.+|.|.|++ .|+.|+|+|+||++.||+||+||+.||+. | ||+|+. ||||+|+ ||||||
T Consensus 5 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~-------FhRvi~~f~iQgGd 77 (177)
T 1a58_A 5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST-------FHRVIKNFMIQGGD 77 (177)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCB-------EEEEETTTEEEECC
T ss_pred CCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCE-------EEEEECCCEEEeCC
Confidence 467788877 48899999999999999999999999985 4 899999 9999999 999999
Q ss_pred CC-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCC
Q psy3664 400 SK-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCN 478 (504)
Q Consensus 400 p~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~ 478 (504)
++ ++|.||+++||.. |+||. ..++|+.+|+|||||+|||+|+||||||+++++
T Consensus 78 ~~~~~g~gg~si~g~~-------------------------f~dE~-~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~ 131 (177)
T 1a58_A 78 FTKGDGTGGESIYGGM-------------------------FDDEE-FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAP 131 (177)
T ss_dssp CSSSSSSCCCCTTSSC-------------------------BCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCG
T ss_pred ccCCCCCCCCcccCCc-------------------------ccCcc-cCcccCCCeEEEEeeCCCCCceeEEEEECCCCC
Confidence 96 8899999999988 99997 689999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 479 HLDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 479 ~LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
|||++|+|||+|++|||||++|++++
T Consensus 132 ~LDg~~~VFG~Vv~G~dvv~~I~~~~ 157 (177)
T 1a58_A 132 HLNNIHVVFGKVVSGQEVVTKIEYLK 157 (177)
T ss_dssp GGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred ccCCCEEEEEEEEcCHHHHHHHHhCC
Confidence 99999999999999999999999864
No 18
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=1.3e-40 Score=311.41 Aligned_cols=137 Identities=32% Similarity=0.450 Sum_probs=127.5
Q ss_pred CCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhh-ccC--------CCCccccccceeEEEeeCC-cccccCCC
Q psy3664 335 KDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVK-ADA--------FNAAHYSQVWLVSSRKLRD-RIQKVDSK 401 (504)
Q Consensus 335 ~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~-~g~--------Y~g~~~s~~~~~fhRvi~~-~iQgGDp~ 401 (504)
.+|+|.|++. |+.|+|+||||++.||+||+||+.||+ .|| |+|+. ||||+|+ ||||||++
T Consensus 2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~-------FhRvi~~f~iQgGd~~ 74 (170)
T 1qng_A 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSI-------FHRIIPQFMCQGGDIT 74 (170)
T ss_dssp CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCB-------CCEEETTTEEEECCTT
T ss_pred CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCE-------EEEEECCCEEEcCCcc
Confidence 3677888663 669999999999999999999999998 488 88888 9999999 99999996
Q ss_pred -CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCC
Q psy3664 402 -LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHL 480 (504)
Q Consensus 402 -~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~L 480 (504)
++|.||+++||.. |+||. ..++|+++|+|||||+|||+|+||||||+.+++||
T Consensus 75 ~~~g~gg~si~g~~-------------------------f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~L 128 (170)
T 1qng_A 75 NGNGSGGESIYGRS-------------------------FTDEN-FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWL 128 (170)
T ss_dssp TSSSSCCCBTTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGG
T ss_pred CCCCCCCccccCCc-------------------------ccccc-cccccCCCCEEEEeecCCCCcccEEEEECCCCccc
Confidence 8899999999988 99997 78999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 481 DGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 481 D~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
|++|+|||+|++|||||++|++++
T Consensus 129 dg~~~vFG~Vv~G~dvv~~I~~~~ 152 (170)
T 1qng_A 129 DGKHVVFGKVIEGMNVVREMEKEG 152 (170)
T ss_dssp TTTSCEEEEEEECHHHHHHHHTTC
T ss_pred CCCeeEEEEEECCHHHHHHHHhCC
Confidence 999999999999999999999874
No 19
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=3.2e-40 Score=307.14 Aligned_cols=136 Identities=26% Similarity=0.386 Sum_probs=128.6
Q ss_pred CCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhh--ccC-CCCccccccceeEEEeeCC-cccccC-CCCCCCCC
Q psy3664 336 DPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVK--ADA-FNAAHYSQVWLVSSRKLRD-RIQKVD-SKLSPMKH 407 (504)
Q Consensus 336 ~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGD-p~~~g~gg 407 (504)
+|+|.|++ .|+.|+|+||||++.||+||+||+.||+ .|| |+|+. |||++|+ |||||| +.++|.|+
T Consensus 2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~-------fhRvi~~f~iQgGd~~~~~g~gg 74 (164)
T 3pmp_A 2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSI-------FHRVIPQFMLQGGDFTRHNGTGG 74 (164)
T ss_dssp CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCB-------EEEEETTTEEEECCTTTSSSSCC
T ss_pred CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCE-------EEEEECCCeEEeCCCCCCCCCCC
Confidence 67788877 3899999999999999999999999999 889 99999 9999999 999999 66899999
Q ss_pred cccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEE
Q psy3664 408 ETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVF 487 (504)
Q Consensus 408 ~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvF 487 (504)
.++||.. |+||. +.++|.++|+|||||+|||+++|||||+++++++||++|+||
T Consensus 75 ~si~g~~-------------------------~~dE~-~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vF 128 (164)
T 3pmp_A 75 KSIYGEK-------------------------FADEN-FQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVF 128 (164)
T ss_dssp CBTTBSC-------------------------BCCCC-CCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEE
T ss_pred cccCCcc-------------------------ccccc-cccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEE
Confidence 9999988 99995 789999999999999999999999999999999999999999
Q ss_pred EEEEccHHHHHHHhhCC
Q psy3664 488 GKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 488 G~Vv~GmdvL~kI~~~~ 504 (504)
|+|++|||||++|++++
T Consensus 129 G~Vv~G~~vv~~I~~~~ 145 (164)
T 3pmp_A 129 GEVIEGLDIVRKVEGKG 145 (164)
T ss_dssp EEEEECHHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHhCC
Confidence 99999999999999864
No 20
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=314.31 Aligned_cols=137 Identities=26% Similarity=0.346 Sum_probs=127.6
Q ss_pred CCCceEEEe---eeCceeEEEEeecCCChhHHHHHHHHhh-----------ccCCCCccccccceeEEEeeCC-cccccC
Q psy3664 335 KDPESRLKT---VTNETRDILDTFKREYKPTEAKVEEKVK-----------ADAFNAAHYSQVWLVSSRKLRD-RIQKVD 399 (504)
Q Consensus 335 ~~p~V~l~~---~T~~G~I~IeL~~d~aP~t~~NF~~L~~-----------~g~Y~g~~~s~~~~~fhRvi~~-~iQgGD 399 (504)
.+|.|.|++ .|+.|+|+||||++.||+||+||+.||+ .+||+|+. ||||+|+ ||||||
T Consensus 18 ~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~-------FhRVi~~fmiQgGd 90 (192)
T 2he9_A 18 GSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST-------FHRVVKNFMIQGGD 90 (192)
T ss_dssp -CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCB-------EEEEETTTEEEECC
T ss_pred CCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCE-------EEEEECCCEEEcCc
Confidence 356677776 5899999999999999999999999995 57999999 9999999 999999
Q ss_pred CC-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCC
Q psy3664 400 SK-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCN 478 (504)
Q Consensus 400 p~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~ 478 (504)
|+ ++|.||+++||.. |+||. ..++|+.+|+|||||+|||+|+||||||+++++
T Consensus 91 ~~~~~G~gg~siyg~~-------------------------f~dE~-~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~ 144 (192)
T 2he9_A 91 FSEGNGKGGESIYGGY-------------------------FKDEN-FILKHDRAFLLSMANRGKHTNGSQFFITTKPAP 144 (192)
T ss_dssp TTTSSSSCCCCTTSSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCG
T ss_pred ccCCCCCCCCcccCCc-------------------------ccCcc-ccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCc
Confidence 96 7899999999988 99997 689999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 479 HLDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 479 ~LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
+||++|+|||+|++|||||++|++++
T Consensus 145 ~LDg~~tVFG~Vv~Gmdvv~~I~~~~ 170 (192)
T 2he9_A 145 HLDGVHVVFGLVISGFEVIEQIENLK 170 (192)
T ss_dssp GGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred ccCCCccEEEEEEeCHHHHHHHHcCC
Confidence 99999999999999999999999874
No 21
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=2.5e-40 Score=314.34 Aligned_cols=132 Identities=27% Similarity=0.318 Sum_probs=123.2
Q ss_pred CCceEEEeeeCceeEEEEeecCCChhHHHHHHHHh---------------hccCCCCccccccceeEEEeeCC-cccccC
Q psy3664 336 DPESRLKTVTNETRDILDTFKREYKPTEAKVEEKV---------------KADAFNAAHYSQVWLVSSRKLRD-RIQKVD 399 (504)
Q Consensus 336 ~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~---------------~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGD 399 (504)
++.|.| +|+.|+|+|+||++.||+||+||+.|| +.+||+|+. ||||+|+ ||||||
T Consensus 23 ~~~v~l--~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~-------FhRVi~~fmiQgGd 93 (191)
T 1w74_A 23 TATATL--HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAV-------FHRVIQGFMIQGGD 93 (191)
T ss_dssp SEEEEE--EETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEE-------EEEEETTTEEEECC
T ss_pred CeEEEE--EecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCE-------EEEEeCCCEEecCC
Confidence 344888 999999999999999999999999999 458999999 9999999 999999
Q ss_pred CCCCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCC
Q psy3664 400 SKLSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNH 479 (504)
Q Consensus 400 p~~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~ 479 (504)
+.++|.|| ||.. |+||+.+.++|+++|+|||||+|||+|+||||||+.++++
T Consensus 94 ~~g~G~gg---~g~~-------------------------f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~ 145 (191)
T 1w74_A 94 PTGTGRGG---PGYK-------------------------FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 145 (191)
T ss_dssp TTSSSSCC---SSCC-------------------------BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGG
T ss_pred CCCCCCCC---CCCc-------------------------cccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcc
Confidence 99888887 5555 9999878999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEc--cHHHHHHHhhCC
Q psy3664 480 LDGKHTVFGKMVG--GMDTLSAIEKVE 504 (504)
Q Consensus 480 LD~k~tvFG~Vv~--GmdvL~kI~~~~ 504 (504)
||++|+|||+|++ |||||++|++++
T Consensus 146 LDg~~tVFG~Vv~~~Gmdvv~~I~~~~ 172 (191)
T 1w74_A 146 LNRRHTIFGEVIDAESQRVVEAISKTA 172 (191)
T ss_dssp GTTTSCEEEEECSHHHHHHHHHHHTSC
T ss_pred cCCCeeEEEEEEECCCHHHHHHHHcCC
Confidence 9999999999999 999999999874
No 22
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=3.4e-40 Score=312.37 Aligned_cols=141 Identities=31% Similarity=0.420 Sum_probs=127.1
Q ss_pred hhhcCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhh--ccC--------CCCccccccceeEEEeeCC-ccc
Q psy3664 331 KEQLKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVK--ADA--------FNAAHYSQVWLVSSRKLRD-RIQ 396 (504)
Q Consensus 331 ~~~~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~--------Y~g~~~s~~~~~fhRvi~~-~iQ 396 (504)
.....+|.|.|++. |+.|+|+|+||++.||+||+||+.||+ .|| |+|+. ||||+|+ |||
T Consensus 14 ~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~-------FhRVi~~f~iQ 86 (186)
T 2poy_A 14 LYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSF-------FHRIIPQFMIQ 86 (186)
T ss_dssp ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCB-------CCEEETTTEEE
T ss_pred cccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCE-------EEEEeCCCEEE
Confidence 33445677988664 679999999999999999999999996 588 88888 9999999 999
Q ss_pred ccCCC-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcC
Q psy3664 397 KVDSK-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYR 475 (504)
Q Consensus 397 gGDp~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~ 475 (504)
|||++ ++|.||+++||.. |+||. ..++|+++|+|||||+|||+|+||||||++
T Consensus 87 gGd~~~~~G~gg~si~g~~-------------------------f~dE~-~~l~h~~~G~lsMAn~gpntngSQFFIt~~ 140 (186)
T 2poy_A 87 GGDFTRGDGTGGESIYGSK-------------------------FRDEN-FVYTHDAPFLLSMANAGPNTNGSQFFITTV 140 (186)
T ss_dssp ECCTTTSSSSCCCCTTC-C-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESS
T ss_pred eCCCCCCCCCCCCccCCCc-------------------------ccCcc-cccccCCCcEEEEeeCCCCCcccEEEEECC
Confidence 99996 7899999999988 99997 789999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 476 SCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 476 ~~~~LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
++++||++|+|||+|++|||||++|++++
T Consensus 141 ~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~ 169 (186)
T 2poy_A 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCG 169 (186)
T ss_dssp CCGGGTTTSCEEEEEEECHHHHHHHHHTC
T ss_pred CCcccCCCeeEEEEEecCHHHHHHHHhCC
Confidence 99999999999999999999999999874
No 23
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=4.4e-40 Score=312.18 Aligned_cols=134 Identities=28% Similarity=0.406 Sum_probs=125.5
Q ss_pred ceEEEee---eCceeEEEEeecCCChhHHHHHHHHhh--ccC-CCCccccccceeEEEeeCC-cccccC-CCCCCCCCcc
Q psy3664 338 ESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVK--ADA-FNAAHYSQVWLVSSRKLRD-RIQKVD-SKLSPMKHET 409 (504)
Q Consensus 338 ~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGD-p~~~g~gg~s 409 (504)
+|.|++. |+.|+|+|+||++.||+||+||+.||+ .|| |+|+. ||||+++ |||||| +.++|.||.|
T Consensus 17 ~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~g~gg~s 89 (188)
T 3ich_A 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSK-------FHRVIKDFMIQGGDFTRGDGTGGKS 89 (188)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCB-------CCEEETTTEEEECCTTTSSSSCCCB
T ss_pred eEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCE-------EEEEECCCEEEcCCccCCCCCCCcc
Confidence 3666653 899999999999999999999999995 799 99999 9999999 999999 6789999999
Q ss_pred cccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q psy3664 410 FWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGK 489 (504)
Q Consensus 410 ~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~ 489 (504)
+||.. |+||. ..++|+++|+|||||+|||+|+||||||+++++|||++|+|||+
T Consensus 90 i~g~~-------------------------f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~ 143 (188)
T 3ich_A 90 IYGER-------------------------FPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGK 143 (188)
T ss_dssp TTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEE
T ss_pred ccCCc-------------------------ccccc-cCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEE
Confidence 99988 99995 78999999999999999999999999999999999999999999
Q ss_pred EEccHHHHHHHhhCC
Q psy3664 490 MVGGMDTLSAIEKVE 504 (504)
Q Consensus 490 Vv~GmdvL~kI~~~~ 504 (504)
|++|||||++|++++
T Consensus 144 Vv~G~dvv~~I~~~~ 158 (188)
T 3ich_A 144 VLEGMEVVRKVESTK 158 (188)
T ss_dssp EEECHHHHHHHHTSC
T ss_pred EeCCHHHHHHHHhCC
Confidence 999999999999864
No 24
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=308.11 Aligned_cols=133 Identities=22% Similarity=0.311 Sum_probs=125.2
Q ss_pred CceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcc
Q psy3664 337 PESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSR 415 (504)
Q Consensus 337 p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~ 415 (504)
+.|.| +|+.|+|+||||++.||+||+||+.||+.|||+|+. ||||+|+ |||||||+++|.||+++||.+
T Consensus 25 ~~V~l--~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~-------FhRvi~~f~iQgGd~~~~g~gg~si~g~~- 94 (185)
T 2hq6_A 25 GKVLL--KTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTI-------FHRVVPGFIVQGGDPTGTGSGGESIYGAP- 94 (185)
T ss_dssp CEEEE--EETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEE-------CCEEETTTEEEECCTTSSSSCCCCTTSSC-
T ss_pred CEEEE--EeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCE-------EEEEECCCEEEcCCCCCCCCCCCcccCCc-
Confidence 33888 999999999999999999999999999999999999 9999999 999999999999999999988
Q ss_pred ccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEccHH
Q psy3664 416 ENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMD 495 (504)
Q Consensus 416 ~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~Gmd 495 (504)
|+||+.+.++|+.+|+|||||+|||+|+|||||+++++++||++|+|||+|+ ||+
T Consensus 95 ------------------------~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~ 149 (185)
T 2hq6_A 95 ------------------------FKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDT 149 (185)
T ss_dssp ------------------------BCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred ------------------------cccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCe
Confidence 9999877899999999999999999999999999999999999999999999 888
Q ss_pred HH--HHHhhCC
Q psy3664 496 TL--SAIEKVE 504 (504)
Q Consensus 496 vL--~kI~~~~ 504 (504)
|+ ++|+.++
T Consensus 150 v~~~~~i~~~~ 160 (185)
T 2hq6_A 150 VYNMLRLSEVD 160 (185)
T ss_dssp HHHHHHTTCSC
T ss_pred eehhhHHhhCC
Confidence 75 5777653
No 25
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.4e-39 Score=307.28 Aligned_cols=140 Identities=25% Similarity=0.339 Sum_probs=129.2
Q ss_pred hhcCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhh--ccC-CCCccccccceeEEEeeCC-cccccC-CCCC
Q psy3664 332 EQLKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVK--ADA-FNAAHYSQVWLVSSRKLRD-RIQKVD-SKLS 403 (504)
Q Consensus 332 ~~~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGD-p~~~ 403 (504)
++..+|+|.|++. |+.|+|+|+||++.||+||+||+.||+ .|| |+|+. ||||+|+ |||||| +.++
T Consensus 23 ~~~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~ 95 (193)
T 3k2c_A 23 AKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGST-------FHRIIPGFMVQGGDYTAHN 95 (193)
T ss_dssp C--CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCB-------EEEEETTTEEEECCTTTSS
T ss_pred cccCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCE-------EEEEeCCCEEEeCCCCCCC
Confidence 3456777999774 889999999999999999999999999 778 99999 9999999 999999 5578
Q ss_pred CCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCC
Q psy3664 404 PMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGK 483 (504)
Q Consensus 404 g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k 483 (504)
|.++.++||.. |+||. +.++|+++|+|||||+|||+++|||||+++++++||++
T Consensus 96 g~gg~si~g~~-------------------------f~dE~-~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~ 149 (193)
T 3k2c_A 96 GTGGRSIYGEK-------------------------FPDEN-FELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEK 149 (193)
T ss_dssp SSCCCCTTSSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTT
T ss_pred CcCCcccCCCc-------------------------ccccc-cccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCC
Confidence 99999999988 99995 78999999999999999999999999999999999999
Q ss_pred CcEEEEEEccHHHHHHHhhCC
Q psy3664 484 HTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 484 ~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
|+|||+|++|||||++|++++
T Consensus 150 ~tVFG~Vv~Gmdvv~~I~~~~ 170 (193)
T 3k2c_A 150 HVVFGEVVEGMDVVHKIAKYG 170 (193)
T ss_dssp SCEEEEEEECHHHHHHHHTTC
T ss_pred ccEEEEEeCCHHHHHHHHhcC
Confidence 999999999999999999864
No 26
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=4.4e-39 Score=300.03 Aligned_cols=134 Identities=25% Similarity=0.290 Sum_probs=120.8
Q ss_pred cCCCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCccccc
Q psy3664 334 LKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWT 412 (504)
Q Consensus 334 ~~~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g 412 (504)
..+|.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ ||||||+++.+. .+.|+
T Consensus 2 ~~~~~v~~--~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------FhRvi~~f~iQgGd~~~~~~--~~~~g 70 (166)
T 1v9t_A 2 KGDPHVLL--TTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTT-------FHRVIPGFMIQGGGFTEQMQ--QKKPN 70 (166)
T ss_dssp CCSCEEEE--EETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCB-------EEEEETTTEEEESSBCTTCC--BCCCC
T ss_pred CCCeEEEE--EeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCE-------EEEEECCcEEEcCCcCcCCC--CCCCC
Confidence 35678999 999999999999999999999999999999999999 9999999 999999986543 33455
Q ss_pred CccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecC-CCCCCCccEEEEcCCCCCCCCC-----CcE
Q psy3664 413 HSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANS-GPNTNTSQFFITYRSCNHLDGK-----HTV 486 (504)
Q Consensus 413 ~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmans-gpns~~SQFfItl~~~~~LD~k-----~tv 486 (504)
.+ |+||+.+.+.| .+|+|||||+ +||+|+|||||++.+++|||++ |+|
T Consensus 71 ~~-------------------------~~dE~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tv 124 (166)
T 1v9t_A 71 PP-------------------------IKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAV 124 (166)
T ss_dssp CC-------------------------BCCCGGGSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCE
T ss_pred Cc-------------------------ccccccccccC-CceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeE
Confidence 55 99998666666 5999999997 5999999999999999999998 999
Q ss_pred EEEEEccHHHHHHHhhCC
Q psy3664 487 FGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 487 FG~Vv~GmdvL~kI~~~~ 504 (504)
||+|++|||||++|++++
T Consensus 125 FG~Vv~G~dvv~~I~~~~ 142 (166)
T 1v9t_A 125 FGKVVKGMDVADKISQVP 142 (166)
T ss_dssp EEEEEECHHHHHHHHTSC
T ss_pred EEEEecCHHHHHHHHhCC
Confidence 999999999999999875
No 27
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=3.6e-39 Score=305.57 Aligned_cols=135 Identities=27% Similarity=0.389 Sum_probs=125.8
Q ss_pred CceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc--c-CCCCccccccceeEEEeeCC-cccccCCC-CCCCCCc
Q psy3664 337 PESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA--D-AFNAAHYSQVWLVSSRKLRD-RIQKVDSK-LSPMKHE 408 (504)
Q Consensus 337 p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g-~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~-~~g~gg~ 408 (504)
|+|.|++. |+.|+|+||||++.||+||+||+.||+. | ||+|+. |||++++ ||||||++ ++|.||.
T Consensus 13 ~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~g~gg~ 85 (185)
T 4fru_A 13 VKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSK-------FHRVIKDFMIQGGDFTRGDGTGGK 85 (185)
T ss_dssp EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCB-------CCEEETTTEEEECCTTTSSSSCCC
T ss_pred cEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCE-------EEEeeCCCeEEECCCCCCCCCCCc
Confidence 34777664 6799999999999999999999999976 6 799999 9999999 99999997 7899999
Q ss_pred ccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEE
Q psy3664 409 TFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFG 488 (504)
Q Consensus 409 s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG 488 (504)
++||.. |+||. ..++|+++|+|||||+|||+|+|||||++++++|||++|+|||
T Consensus 86 si~g~~-------------------------f~de~-~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG 139 (185)
T 4fru_A 86 SIYGER-------------------------FPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFG 139 (185)
T ss_dssp BTTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEE
T ss_pred cccCCc-------------------------cCccc-cccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEE
Confidence 999988 99997 6899999999999999999999999999999999999999999
Q ss_pred EEEccHHHHHHHhhCC
Q psy3664 489 KMVGGMDTLSAIEKVE 504 (504)
Q Consensus 489 ~Vv~GmdvL~kI~~~~ 504 (504)
+|++|||||++|++++
T Consensus 140 ~Vv~G~dvv~~I~~~~ 155 (185)
T 4fru_A 140 KVLEGMEVVRKVETTK 155 (185)
T ss_dssp EEEECHHHHHHHHTSC
T ss_pred EEeCCHHHHHHHHhCC
Confidence 9999999999999864
No 28
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=3.2e-39 Score=314.02 Aligned_cols=140 Identities=26% Similarity=0.403 Sum_probs=129.7
Q ss_pred hhcCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhcc--------CCCCccccccceeEEEeeCC-cccccC
Q psy3664 332 EQLKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKAD--------AFNAAHYSQVWLVSSRKLRD-RIQKVD 399 (504)
Q Consensus 332 ~~~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~g--------~Y~g~~~s~~~~~fhRvi~~-~iQgGD 399 (504)
....+|.|.|++. |+.|+|+||||++.||+||+||+.||+.+ ||+|+. ||||+|+ ||||||
T Consensus 55 ~~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~-------FHRVi~~FmiQgGD 127 (229)
T 1z81_A 55 TNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTI-------FHRVIKEFMIQGGD 127 (229)
T ss_dssp SSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEE-------CCEEETTTEEEECC
T ss_pred cCCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCE-------EEEEeCCCEEEcCC
Confidence 3345778999664 67999999999999999999999999987 688888 9999999 999999
Q ss_pred CC-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCC
Q psy3664 400 SK-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCN 478 (504)
Q Consensus 400 p~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~ 478 (504)
++ ++|.||+++||.. |+||. ..++|+++|+|||||+|||+|+||||||+.+++
T Consensus 128 ~~~g~G~Gg~siyg~~-------------------------f~dE~-~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~ 181 (229)
T 1z81_A 128 FINHNGSGSLSIYGEK-------------------------FDDEN-FDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181 (229)
T ss_dssp TTTSSSCCCCBTTBSC-------------------------CCCCC-CCSCCCSTTEEEECCSSSSCCCSCEEEESSCCG
T ss_pred CcCCCCCCCCccCCCc-------------------------ccccc-cccccCCCcEEEeccCCCCCcccEEEEECCCCc
Confidence 95 8899999999988 99997 789999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEE--ccHHHHHHHhhCC
Q psy3664 479 HLDGKHTVFGKMV--GGMDTLSAIEKVE 504 (504)
Q Consensus 479 ~LD~k~tvFG~Vv--~GmdvL~kI~~~~ 504 (504)
+||++|+|||+|+ +|||||++|++++
T Consensus 182 ~LDg~~tVFG~Vv~~eGmdVv~~I~~~~ 209 (229)
T 1z81_A 182 WLDGKNVVFGRIIDNDSLLLLKKIENVS 209 (229)
T ss_dssp GGBTTBCEEEEECSHHHHHHHHHHHHSC
T ss_pred ccCCCeeEEEEEEecCcHHHHHHHHhCC
Confidence 9999999999999 9999999999874
No 29
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=4.9e-39 Score=313.85 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=123.4
Q ss_pred ceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccc--cCc
Q psy3664 338 ESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFW--THS 414 (504)
Q Consensus 338 ~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~--g~~ 414 (504)
.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ |||||||+++|.||+++| |..
T Consensus 23 ~V~l--~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~-------FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~ 93 (232)
T 3bkp_A 23 KVVL--HTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTI-------FHRVVKDFIVQGGDPTGTGRGGADTTFDGKP 93 (232)
T ss_dssp EEEE--EETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCB-------EEEEETTTEEEECCTTSSSSCCCCCTTTTCC
T ss_pred EEEE--EECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCE-------EEEEeCCCEEEcCCCCCCCCCCCccccCCCc
Confidence 3888 999999999999999999999999999999999999 9999999 999999999999999999 777
Q ss_pred cccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCC--------------CCCCccEEEEcCCCCCC
Q psy3664 415 RENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGP--------------NTNTSQFFITYRSCNHL 480 (504)
Q Consensus 415 ~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgp--------------ns~~SQFfItl~~~~~L 480 (504)
|+||+.+.++|+.+|+|||||+|+ ++|+||||||++++++|
T Consensus 94 -------------------------f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~L 148 (232)
T 3bkp_A 94 -------------------------FDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVL 148 (232)
T ss_dssp -------------------------BCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGG
T ss_pred -------------------------cCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCccc
Confidence 999997889999999999999997 69999999999999999
Q ss_pred CCCCcEEEEEEccHHH--HHHHhhCC
Q psy3664 481 DGKHTVFGKMVGGMDT--LSAIEKVE 504 (504)
Q Consensus 481 D~k~tvFG~Vv~Gmdv--L~kI~~~~ 504 (504)
|++|+|||+|+ ||+| |++|+.++
T Consensus 149 Dg~~tVFG~Vv-g~~v~~v~kI~~~~ 173 (232)
T 3bkp_A 149 NNAYTLFGKVT-GHTLYNLMKFNDLE 173 (232)
T ss_dssp TTTSCEEEEEC-GGGHHHHHHHTTSC
T ss_pred CCCccEEEEEE-eCchHHHHHHHcCC
Confidence 99999999999 7765 88998764
No 30
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=302.49 Aligned_cols=138 Identities=28% Similarity=0.418 Sum_probs=126.4
Q ss_pred cCCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc--cC-CCCccccccceeEEEeeCC-cccccCC-CCCCC
Q psy3664 334 LKDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA--DA-FNAAHYSQVWLVSSRKLRD-RIQKVDS-KLSPM 405 (504)
Q Consensus 334 ~~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~--g~-Y~g~~~s~~~~~fhRvi~~-~iQgGDp-~~~g~ 405 (504)
..+|+|.|++. |+.|+|+|+||++.||+||+||+.||+. || |+|+. ||||+++ ||||||+ .++|.
T Consensus 20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~-------FhRvi~~f~iQgGd~~~~~g~ 92 (184)
T 3rdd_A 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC-------FHRIIPGFMCQGGDFTRHNGT 92 (184)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCB-------CCEEETTTEEEECCTTTSSSS
T ss_pred CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCE-------EEEccCCcEEEeCCCCCCCCC
Confidence 35677999553 5599999999999999999999999976 45 99999 9999999 9999995 57899
Q ss_pred CCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCc
Q psy3664 406 KHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHT 485 (504)
Q Consensus 406 gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~t 485 (504)
|+.++|+.. |+||. ..++|+.+|+|||||+|||+|+|||||+++++++||++|+
T Consensus 93 gg~si~g~~-------------------------~~de~-~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~t 146 (184)
T 3rdd_A 93 GGKSIYGEK-------------------------FEDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 146 (184)
T ss_dssp CCCBTTBSC-------------------------BCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSC
T ss_pred CCcccCCCc-------------------------ccCcc-cccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCce
Confidence 999999988 99997 6899999999999999999999999999999999999999
Q ss_pred EEEEEEccHHHHHHHhhCC
Q psy3664 486 VFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 486 vFG~Vv~GmdvL~kI~~~~ 504 (504)
|||+|++|||||++|++++
T Consensus 147 VFG~Vv~G~dvv~~I~~~~ 165 (184)
T 3rdd_A 147 VFGKVKEGMNIVEAMERFG 165 (184)
T ss_dssp EEEEEEECHHHHHHHHTTC
T ss_pred EEEEEecCHHHHHHHHhcC
Confidence 9999999999999999864
No 31
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=8.7e-39 Score=297.48 Aligned_cols=129 Identities=23% Similarity=0.323 Sum_probs=119.2
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccCcccc
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTHSREN 417 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~~~~~ 417 (504)
|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+|+ |||||||+.. .|.++|+.+
T Consensus 2 v~l--~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------FhRvi~~f~iQgGd~~~~--~g~~~~g~~--- 67 (164)
T 1lop_A 2 VTF--HTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI-------FHRVINGFMIQGGGFEPG--MKQKATKEP--- 67 (164)
T ss_dssp EEE--EETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEE-------CCEEETTTEEEESSEETT--TEECCCCCC---
T ss_pred EEE--EeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCE-------EEEEeCCceEecCCcccC--CCcCCCCCc---
Confidence 777 999999999999999999999999999999999999 9999999 9999999732 256778777
Q ss_pred ccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecC-CCCCCCccEEEEcCCCCCCCCC--------CcEEE
Q psy3664 418 TNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANS-GPNTNTSQFFITYRSCNHLDGK--------HTVFG 488 (504)
Q Consensus 418 ~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmans-gpns~~SQFfItl~~~~~LD~k--------~tvFG 488 (504)
|+||+.+.+.| .+|+|||||. +||+|+|||||++++++|||++ |+|||
T Consensus 68 ----------------------~~dE~~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG 124 (164)
T 1lop_A 68 ----------------------IKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124 (164)
T ss_dssp ----------------------BCCCCCSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEE
T ss_pred ----------------------ccccccccccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEE
Confidence 99998777888 5999999974 7999999999999999999998 99999
Q ss_pred EEEccHHHHHHHhhCC
Q psy3664 489 KMVGGMDTLSAIEKVE 504 (504)
Q Consensus 489 ~Vv~GmdvL~kI~~~~ 504 (504)
+|++|||||++|++++
T Consensus 125 ~Vv~G~dvv~~I~~~~ 140 (164)
T 1lop_A 125 EVVDGMDEVDKIKGVA 140 (164)
T ss_dssp EEEECHHHHHHHHTSC
T ss_pred EEecCHHHHHHHHhCC
Confidence 9999999999999875
No 32
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=7.7e-39 Score=298.72 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=121.0
Q ss_pred CCCceEEEeeeCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEEEeeCC-cccccCCCCCCCCCcccccC
Q psy3664 335 KDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSSRKLRD-RIQKVDSKLSPMKHETFWTH 413 (504)
Q Consensus 335 ~~p~V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fhRvi~~-~iQgGDp~~~g~gg~s~~g~ 413 (504)
.+|.|.| +|+.|+|+|+||++.||+||+||+.||+.|||+|+. ||||+++ ||||||+++.+ +.+.|+.
T Consensus 2 p~~~v~l--~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~-------FhRvi~~f~iQgGd~~~~~--~~~~~~~ 70 (167)
T 3s6m_A 2 PGSMVEL--HTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTI-------FHRVINGFMIQGGGFEPGL--KQKPTDA 70 (167)
T ss_dssp CCCEEEE--EETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEE-------CCEEETTTEEEESSEETTT--EECCCCC
T ss_pred CCcEEEE--EeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCE-------eEEecCCcEEEeccccCCC--CCCCCCC
Confidence 4577889 999999999999999999999999999999999999 9999999 99999997543 3345666
Q ss_pred ccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEec-CCCCCCCccEEEEcCCCCCCCCC--------C
Q psy3664 414 SRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMAN-SGPNTNTSQFFITYRSCNHLDGK--------H 484 (504)
Q Consensus 414 ~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsman-sgpns~~SQFfItl~~~~~LD~k--------~ 484 (504)
+ |++|..+.+.| .+|+||||| .+||+|+|||||++.++++||++ |
T Consensus 71 ~-------------------------~~~E~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~ 124 (167)
T 3s6m_A 71 P-------------------------IANEANNGLKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGY 124 (167)
T ss_dssp C-------------------------BCCCGGGCCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCC
T ss_pred c-------------------------cCCcccccccC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCc
Confidence 6 89998677888 699999999 57999999999999999999998 9
Q ss_pred cEEEEEEccHHHHHHHhhCC
Q psy3664 485 TVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 485 tvFG~Vv~GmdvL~kI~~~~ 504 (504)
+|||+|++|||||++|++++
T Consensus 125 ~VFG~Vv~G~dvv~~I~~~~ 144 (167)
T 3s6m_A 125 AVFGKVVEGQDIVDKIKAVK 144 (167)
T ss_dssp CEEEEEEECHHHHHHHTTSC
T ss_pred eEEEEEEcCHHHHHHHHcCC
Confidence 99999999999999999875
No 33
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=1.9e-39 Score=304.00 Aligned_cols=128 Identities=30% Similarity=0.465 Sum_probs=94.7
Q ss_pred eeCceeEEEEeecCCChhHHHHHHHHhh--ccC-CCCccccccceeEEEeeCC-cccccC-CCCCCCCCcccccCccccc
Q psy3664 344 VTNETRDILDTFKREYKPTEAKVEEKVK--ADA-FNAAHYSQVWLVSSRKLRD-RIQKVD-SKLSPMKHETFWTHSRENT 418 (504)
Q Consensus 344 ~T~~G~I~IeL~~d~aP~t~~NF~~L~~--~g~-Y~g~~~s~~~~~fhRvi~~-~iQgGD-p~~~g~gg~s~~g~~~~~~ 418 (504)
.|+.|+|+|+||++.||+||+||+.||+ .|| |+|+. ||||+|+ |||||| +.++|.||+++||.+
T Consensus 18 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~-------fhRvi~~f~iQgGd~~~~~g~gg~si~g~~---- 86 (172)
T 2c3b_A 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYREST-------FHRIIPNFMIQGGDFTRGNGTGGRSIYGDK---- 86 (172)
T ss_dssp CCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCB-------CCEEETTTEEEECC--------------------
T ss_pred ecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCE-------EEEEeCCCEEEeCCcCCCCCCCCcccCCCc----
Confidence 5888999999999999999999999999 788 99999 9999999 999999 789999999999988
Q ss_pred cccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCCCCCCCcEEEEEEc--cHHH
Q psy3664 419 NQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG--GMDT 496 (504)
Q Consensus 419 ~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~LD~k~tvFG~Vv~--Gmdv 496 (504)
|+||. +.++|+++|+|||||+|||+|+|||||++++++|||++|+|||+|++ ||||
T Consensus 87 ---------------------f~dE~-~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dv 144 (172)
T 2c3b_A 87 ---------------------FADEN-FSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSV 144 (172)
T ss_dssp ----------------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHH
T ss_pred ---------------------ccCcc-cccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHH
Confidence 99995 78899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhhCC
Q psy3664 497 LSAIEKVE 504 (504)
Q Consensus 497 L~kI~~~~ 504 (504)
|++|++++
T Consensus 145 v~~I~~~~ 152 (172)
T 2c3b_A 145 VKEIEALG 152 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99999864
No 34
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=9.8e-38 Score=305.22 Aligned_cols=140 Identities=21% Similarity=0.351 Sum_probs=119.0
Q ss_pred CCCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc-----------------c--C-CCCccccccceeEEEee
Q psy3664 335 KDPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA-----------------D--A-FNAAHYSQVWLVSSRKL 391 (504)
Q Consensus 335 ~~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~-----------------g--~-Y~g~~~s~~~~~fhRvi 391 (504)
.+|.|.|++. |+.|+|+||||++.||+||+||+.||+. | | |+|+. ||||+
T Consensus 13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~-------FHRVi 85 (234)
T 2ose_A 13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCK-------FHNVL 85 (234)
T ss_dssp SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCB-------CCEEE
T ss_pred CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcE-------EEEEE
Confidence 4567888654 9999999999999999999999999994 4 6 88888 99999
Q ss_pred CC-cccccC-CCCCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEec----CCCCC
Q psy3664 392 RD-RIQKVD-SKLSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMAN----SGPNT 465 (504)
Q Consensus 392 ~~-~iQgGD-p~~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsman----sgpns 465 (504)
++ |||||| +.++|.||+|+||... .+..|+ + +.++|+++|+||||| +|||+
T Consensus 86 ~~FmiQgGd~~~g~G~Gg~siyg~~~--------------------~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpnt 142 (234)
T 2ose_A 86 HNNYIVSGDIYNSNGSSAGTVYCDEP--------------------IPPVFG-D--YFYPHESKGLLSLVPYTDESGNRY 142 (234)
T ss_dssp TTTEEEECCCC----CCCCCTTTTCC--------------------BCCCCC-S--CCCCSCSTTEEEECCEECTTSCEE
T ss_pred CCCEEEcCCccCCCCCCCccccCCcc--------------------Cccccc-C--cCccCCCCCEEEEecccccCCCCC
Confidence 99 999999 5789999999998651 111254 3 479999999999999 99999
Q ss_pred CCccEEEEcCC------CCCCCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 466 NTSQFFITYRS------CNHLDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 466 ~~SQFfItl~~------~~~LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
|+||||||+++ ++|||++|+|||+|++|||||++|++++
T Consensus 143 ngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~ 187 (234)
T 2ose_A 143 YDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMI 187 (234)
T ss_dssp BCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHT
T ss_pred ccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCC
Confidence 99999999999 9999999999999999999999999753
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=2.9e-37 Score=320.27 Aligned_cols=136 Identities=32% Similarity=0.465 Sum_probs=127.2
Q ss_pred CCceEEEee---eCceeEEEEeecCCChhHHHHHHHHhhc--------c---CCCCccccccceeEEEeeCC-cccccCC
Q psy3664 336 DPESRLKTV---TNETRDILDTFKREYKPTEAKVEEKVKA--------D---AFNAAHYSQVWLVSSRKLRD-RIQKVDS 400 (504)
Q Consensus 336 ~p~V~l~~~---T~~G~I~IeL~~d~aP~t~~NF~~L~~~--------g---~Y~g~~~s~~~~~fhRvi~~-~iQgGDp 400 (504)
+|.|.|++. ++.|+|+|+||++.||+||+||+.||++ | ||+|+. ||||+|+ |||||||
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~-------fhrv~~~f~~q~Gd~ 87 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP-------FHRIIKKFMIQGGDF 87 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCB-------EEEEETTTEEEECCT
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcE-------eEEEECCcEEECCCC
Confidence 566888553 4599999999999999999999999998 6 699999 9999999 9999999
Q ss_pred C-CCCCCCcccccCccccccccchhhhccccccCCCCCccccCCCCCCCCCCCCcEEEEecCCCCCCCccEEEEcCCCCC
Q psy3664 401 K-LSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNH 479 (504)
Q Consensus 401 ~-~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~~~~l~h~~rG~lsmansgpns~~SQFfItl~~~~~ 479 (504)
+ ++|+||+++||.. |+||+ ..++|+.+|+|||||+|||+||||||||+++++|
T Consensus 88 ~~~~g~g~~~~~~~~-------------------------~~~e~-~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ 141 (370)
T 1ihg_A 88 SNQNGTGGESIYGEK-------------------------FEDEN-FHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPH 141 (370)
T ss_dssp TTSSSSCCCBTTBSC-------------------------BCCCC-CCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGG
T ss_pred CCCCCCCCCCCCCCC-------------------------cCCCc-CCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcc
Confidence 8 8999999999988 99997 6899999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEccHHHHHHHhhCC
Q psy3664 480 LDGKHTVFGKMVGGMDTLSAIEKVE 504 (504)
Q Consensus 480 LD~k~tvFG~Vv~GmdvL~kI~~~~ 504 (504)
||++|+|||+|++||+||++|+.++
T Consensus 142 ld~~~~vfG~v~~g~~v~~~i~~~~ 166 (370)
T 1ihg_A 142 LDGKHVVFGQVIKGMGVAKILENVE 166 (370)
T ss_dssp GTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred cCCCceEEEEEecCHHHHHHHHcCC
Confidence 9999999999999999999999764
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=3.2e-36 Score=310.22 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=127.0
Q ss_pred ccchhhhhhhcchhhhhhhcCCCceEEEee------eCceeEEEEeecCCChhHHHHHHHHhhccCCCCccccccceeEE
Q psy3664 315 VEEDLVRYSRVVKKEEKEQLKDPESRLKTV------TNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSS 388 (504)
Q Consensus 315 ~~~~~~~~~~~k~k~~~~~~~~p~V~l~~~------T~~G~I~IeL~~d~aP~t~~NF~~L~~~g~Y~g~~~s~~~~~fh 388 (504)
+++++..+++++.+.+ |.|.+. |+.|+|+|+||++.||+||+||+.||+.|||+|+. ||
T Consensus 157 vP~~y~~~P~l~gra~--------V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~-------FH 221 (369)
T 3rfy_A 157 VPEEYRNMPLLKGRAS--------VDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGME-------IQ 221 (369)
T ss_dssp CCSSCTTSCEECSEEE--------EEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEE-------CE
T ss_pred CchhcccCccCCCCeE--------EEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCe-------ee
Confidence 4445556667777777 888332 23999999999999999999999999999999999 99
Q ss_pred EeeCC-cccccCCCCCCCCCcccccCccccccccchhhhccccccCCCCCccccCCC----CCCCCCCCCcEEEEecC--
Q psy3664 389 RKLRD-RIQKVDSKLSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNT----KPNYTHTGRGVLSMANS-- 461 (504)
Q Consensus 389 Rvi~~-~iQgGDp~~~g~gg~s~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~f~de~----~~~l~h~~rG~lsmans-- 461 (504)
|| ++ |||||||+++|.|+...+..+. -.++.|... ...+.+.....|+||. .+.++|+.+|+|||||+
T Consensus 222 RV-~gFmIQgGDp~g~G~G~~~~~~g~~---~~iP~E~~~-~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~ 296 (369)
T 3rfy_A 222 RS-DGFVVQTGDPEGPAEGFIDPSTEKT---RTVPLEIMV-TGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEF 296 (369)
T ss_dssp EE-EEEEECCCCCCCCCSCCCSCCCCCC---CSSSSSSCS-SSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCC
T ss_pred ee-CCeeEecCCCCCCCCCccCcccCcC---cccCccccc-cCCCCCcCCCccccccccccccccccCCCceEEEeecCC
Confidence 99 99 9999999988877432211110 001111110 0001112222366663 35788999999999998
Q ss_pred CCCCCCccEEEEc-------CCCCCCCCCCcEEEEEEccHHHHHHHhh
Q psy3664 462 GPNTNTSQFFITY-------RSCNHLDGKHTVFGKMVGGMDTLSAIEK 502 (504)
Q Consensus 462 gpns~~SQFfItl-------~~~~~LD~k~tvFG~Vv~GmdvL~kI~~ 502 (504)
+||+|+|||||++ .+++|||++|+|||+|++|||||++|++
T Consensus 297 gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~ 344 (369)
T 3rfy_A 297 ENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV 344 (369)
T ss_dssp CCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred CCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence 7999999999999 5789999999999999999999999976
No 37
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.42 E-value=9.9e-14 Score=107.87 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=52.7
Q ss_pred ccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeee
Q psy3664 40 DHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHK 95 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~ 95 (504)
.+||||++++++||++ ++|++|++++|.+||+++++||+||++|+.+||+++++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~~ 60 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSA 60 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC-
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccCC
Confidence 4799999999999999 8999999999999999999999999999999999998753
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.39 E-value=3e-13 Score=119.07 Aligned_cols=114 Identities=16% Similarity=0.264 Sum_probs=98.5
Q ss_pred ccccCCCCCCCCc-------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecC
Q psy3664 40 DHCCVSLQPYEHP-------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSK 112 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (504)
..|+||++.+.+| +..+.||+|++.||.+||+....||+.+.++..+++.++.+. +....||||...|.+
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~---~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG---SGTVSCPICMDGYSE 84 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS---SSSCBCTTTCCBHHH
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC---CCCCCCCCCCCcccc
Confidence 4699999999999 899999999999999999999999999999999999887554 346789999999876
Q ss_pred c---eeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 113 H---SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 113 ~---t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
. .+.+.+-+|||+|+..++++.-.. ...||+|..++..+|++.|
T Consensus 85 ~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp HHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGGGEEEE
T ss_pred ccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChhcceee
Confidence 3 345567799999999999987643 3379999999999998875
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.01 E-value=4.7e-10 Score=92.57 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=53.8
Q ss_pred ccccC-CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEee
Q psy3664 34 FKRLP-FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 34 ~~~lp-f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (504)
+..+| ...|+||++.|++||++++||.||+.||..||..+..||+||+++...+|++...
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~ 68 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPE 68 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHH
Confidence 34455 7789999999999999999999999999999999999999999999999887643
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=6.6e-10 Score=94.23 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=55.5
Q ss_pred CccccC-CccccCCCCCCCCceecCCC-cEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeee
Q psy3664 33 DFKRLP-FDHCCVSLQPYEHPYCDKDG-NIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHK 95 (504)
Q Consensus 33 ~~~~lp-f~~C~Lsl~pl~~Pv~~~~G-~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~ 95 (504)
.+..+| ...||||+++|++||++++| |.||+.||..||..+..||+|++++...+|++...-+
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk 79 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELK 79 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHH
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHH
Confidence 344565 67899999999999999999 9999999999999999999999999999998865433
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.96 E-value=7.7e-10 Score=94.18 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=53.4
Q ss_pred cccC-CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEee
Q psy3664 35 KRLP-FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 35 ~~lp-f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (504)
..+| ...||||+++|++||++++||.||+.||..||..+..||+|++++...+|++...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~ 83 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPE 83 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHH
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHH
Confidence 3455 7789999999999999999999999999999999999999999999999987643
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=3.2e-09 Score=99.51 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=51.3
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCCceeEeee
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKSLIKLNFH 94 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kdLi~l~f~ 94 (504)
+...||||+.+|.+||++++||.||+.||..||..++ .||+||.++...+|++...-
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~L 162 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHH
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHH
Confidence 5678999999999999999999999999999999865 49999999999999886443
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=4.4e-09 Score=88.21 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=44.1
Q ss_pred CccccCCCCCCCCceecC-CCcEEeHHHHHHHHHhc------CCCCCCCCc---CCCCCcee
Q psy3664 39 FDHCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQY------KHNPVTGKP---LDVKSLIK 90 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~------~~~Pvtg~~---l~~kdLi~ 90 (504)
...||||+++|.+||+++ +||+||+.||..||..+ ..||+||.+ +...+|++
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 456999999999999996 99999999999999876 278887766 66777765
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.8e-08 Score=99.11 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=49.3
Q ss_pred cCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCC-CCCCCCcCCCCCcee
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKH-NPVTGKPLDVKSLIK 90 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~-~Pvtg~~l~~kdLi~ 90 (504)
.++..|+||+++|.+||++++||.||+.||..||...+. ||+|+.+++..+|++
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 458889999999999999999999999999999988655 999999999888876
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.59 E-value=5.1e-08 Score=78.19 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=47.6
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCcee
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~ 90 (504)
....|+||++++.+||.++.||+||+.||..|+.. ...||+++.++...+|++
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 35679999999999999999999999999999987 778999999988887765
No 46
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=68.99 Aligned_cols=54 Identities=7% Similarity=0.005 Sum_probs=48.8
Q ss_pred CCccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l 91 (504)
....|+||+..+.+||.. +.||+|++.||..|+.....||+.+.++...+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 356799999999999875 999999999999999999999999999999888653
No 47
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.24 E-value=7.4e-07 Score=69.74 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=49.9
Q ss_pred CccccCCCCCCCCc-------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEe
Q psy3664 39 FDHCCVSLQPYEHP-------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 39 f~~C~Lsl~pl~~P-------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (504)
-..|+||++.+.+| +..+.||+|++.||..|++....||+.+.++..+++.++-
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 45699999999998 8899999999999999999999999999999999998774
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.21 E-value=7.8e-07 Score=67.99 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=49.8
Q ss_pred ccccCCCCCCCCc-------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEee
Q psy3664 40 DHCCVSLQPYEHP-------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLNF 93 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f 93 (504)
..|+||++.+.+| +..+.||+|+..||..|+.....||+.+.++..+++++|-|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4699999999987 88999999999999999999999999999999999998743
No 49
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.2e-06 Score=67.47 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=42.0
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
...|+||+..+.+||.++.||+||+.||..|+.....||+++.++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4579999999999999999999999999999998888888888775
No 50
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.19 E-value=1.1e-06 Score=74.16 Aligned_cols=54 Identities=11% Similarity=0.287 Sum_probs=47.7
Q ss_pred CccccCCCCCCCCcee-cCCCcEEeHHHHHHHHHhc-CCCCCCCCcCCCCCceeEe
Q psy3664 39 FDHCCVSLQPYEHPYC-DKDGNIFELEALMGYLKQY-KHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~-~~~G~lf~k~~Il~~L~~~-~~~Pvtg~~l~~kdLi~l~ 92 (504)
...|+||+..+.+||. .+.||+||+.||..|+... ..||+++.++...+|++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 4569999999999988 9999999999999999988 5899999988888877653
No 51
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.4e-06 Score=66.19 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=45.8
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHH-hcCCCCCCCCcCCCCCc
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLK-QYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~-~~~~~Pvtg~~l~~kdL 88 (504)
.-..|+||+..+.+||.++.||+|++.||..|+. ....||+.+.++..++|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3566999999999999999999999999999994 56789999999998886
No 52
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.12 E-value=4.5e-06 Score=66.34 Aligned_cols=50 Identities=12% Similarity=-0.016 Sum_probs=43.3
Q ss_pred CccccCCCCCCCCceecC-CCcEEeHHHHHHHHHhc--CCCCCCCCcCCCCCc
Q psy3664 39 FDHCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQY--KHNPVTGKPLDVKSL 88 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~--~~~Pvtg~~l~~kdL 88 (504)
...|+||+..+.+||.++ .||+||+.||..|+... ..||+.+.+....|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 556999999999999999 89999999999999976 589999987554443
No 53
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.10 E-value=7.3e-06 Score=65.90 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHh------cCCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ------YKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~------~~~~Pvtg~~l~~kdLi~l 91 (504)
....|+||+..+.+|+.++.||+||+.||..|+.. ...||+++.++...+|.+.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence 35679999999999999999999999999999998 6689999999888877654
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.09 E-value=1.4e-06 Score=67.33 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=47.3
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQD 160 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqd 160 (504)
.|+||||+..|.+- |...+||+||..++|++.... +..||+|+++++.+|+|.++.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChhhcEECcc
Confidence 48999999999975 444489999999999998754 346999999999999999864
No 55
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.8e-06 Score=67.98 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=48.1
Q ss_pred cCCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCcee
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~ 90 (504)
..-..|+||++.+.+||..+.||+|++.||..|+.....||+.+.++...+|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 445679999999999999999999999999999999999999999888776654
No 56
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.07 E-value=3.9e-06 Score=69.17 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=39.1
Q ss_pred CCccccCCCCCCCCceecC-CCcEEeHHHHHHHHHhcC--CCCCCCCcC
Q psy3664 38 PFDHCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQYK--HNPVTGKPL 83 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~~--~~Pvtg~~l 83 (504)
.-..|+||++.|.+||..+ .||.||+.||..|+...+ .||+++.++
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3567999999999999999 899999999999998654 677766665
No 57
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=6.4e-06 Score=66.24 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHh------cCCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ------YKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~------~~~~Pvtg~~l~~kdLi~l 91 (504)
....|+||+..+.+|+..+.||+||+.||..|+.. ...||+++.++...+|.+-
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 45679999999999999999999999999999988 6789999999988877643
No 58
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.3e-06 Score=85.89 Aligned_cols=51 Identities=22% Similarity=0.552 Sum_probs=38.9
Q ss_pred CccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcC--CCCC--CCCcCCCCCce
Q psy3664 39 FDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYK--HNPV--TGKPLDVKSLI 89 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~--~~Pv--tg~~l~~kdLi 89 (504)
.-.||||+.+|++||.. .+||.||+.||..|+...+ .||+ +++++...||+
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 45699999999999974 8999999999999997642 3555 22555555543
No 59
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=9.2e-06 Score=66.01 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=47.8
Q ss_pred CCccccCCCCCCCC----ceecCCCcEEeHHHHHHHHHhc---CCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEH----PYCDKDGNIFELEALMGYLKQY---KHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~----Pv~~~~G~lf~k~~Il~~L~~~---~~~Pvtg~~l~~kdLi~l 91 (504)
....|+||+..+.+ |+..+.||.||+.||..|+... ..||+++.++...++..|
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 45679999999999 9999999999999999999986 789999999888776554
No 60
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.03 E-value=4.2e-06 Score=70.08 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=43.7
Q ss_pred CccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCcee
Q psy3664 39 FDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~ 90 (504)
...|+||+..+.+||.. +.||.||+.||..|+.....||+++.++...+|.+
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence 45799999999999887 89999999999999998777887777776655543
No 61
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=1.1e-05 Score=63.45 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=44.9
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHH---hcCCCCCCCCcCCCCCc
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLK---QYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~---~~~~~Pvtg~~l~~kdL 88 (504)
....|+||+..+.+|+..+.||+||+.||..|+. ....||+.+.++...++
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567999999999999999999999999999997 34579999998888776
No 62
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.03 E-value=3.1e-06 Score=75.54 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=38.8
Q ss_pred cccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 41 HCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
.|+||+.++.+||.+++||.||..||..|+.....||+++.++.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 59999999999999999999999999999987777777766654
No 63
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.00 E-value=4e-06 Score=71.46 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC---CCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK---HNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~---~~Pvtg~~l~~kdLi~l 91 (504)
...|+||+..+.+|+.+++||.||+.||..|+.... .||+++.++...+|.+.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 346999999999999999999999999999998764 78888888887776553
No 64
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.00 E-value=6.7e-06 Score=71.78 Aligned_cols=47 Identities=11% Similarity=-0.010 Sum_probs=40.9
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDV 85 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~ 85 (504)
-..|+||+..+.+||.+++||.||+.||..|+.... .||+++.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346999999999999999999999999999998554 78888777766
No 65
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.98 E-value=5.6e-06 Score=71.77 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=45.8
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kdLi~l 91 (504)
...|+||+..+.+||.++.||+||+.||..|+.... .||+++.++...++++-
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 457999999999999999999999999999998876 78888887777666554
No 66
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.98 E-value=6.3e-06 Score=74.85 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=42.9
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKS 87 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kd 87 (504)
...|+||+..+.+||.+++||.||+.||..|+.... .||+++.++...+
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 457999999999999999999999999999998654 6888888877763
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.94 E-value=7.3e-06 Score=75.09 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=37.0
Q ss_pred CccccCCCCCCCCceec-CCCcEEeHHHHHHHHHh-cCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQ-YKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~ 84 (504)
-..|+||+..+.+||.+ ++||+||+.||..||.. ...||+++.++.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34799999999999876 99999999999999985 444555555443
No 68
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.4e-05 Score=61.81 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=43.2
Q ss_pred CCccccCCCCCCCCc-------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCC
Q psy3664 38 PFDHCCVSLQPYEHP-------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDV 85 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P-------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~ 85 (504)
....|+||+..+.+| +..+.||+|+..||..||.....||+.+.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456799999999988 889999999999999999999999999888764
No 69
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.92 E-value=5.4e-06 Score=63.98 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=48.6
Q ss_pred ceeecccee-eecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 100 EYHCPVLYK-VFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 100 ~~~CPvt~k-~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
++.||||.. .|.+....+++.+|||+|+.++++++... +...||+|..++.+.|++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSCCCEEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccccceee
Confidence 578999999 88887666667899999999999998533 34579999999999998764
No 70
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.88 E-value=1.1e-05 Score=69.41 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=47.5
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~l 91 (504)
...|+||+..+.+||.++.||+||+.||..|+.. ...||+.+.++...+|++.
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 4569999999999999999999999999999987 6689999999988887654
No 71
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.85 E-value=1.4e-05 Score=67.94 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=40.9
Q ss_pred CccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcCCCCCCCCcCCCC
Q psy3664 39 FDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVK 86 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~k 86 (504)
...|+||+..+.+||.. ++||.||+.||..|+.....||+++.++...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 55799999999999886 9999999999999998877777777666544
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.80 E-value=1.4e-05 Score=61.51 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=47.5
Q ss_pred ccccCCCC-CCCCc----eecCCCcEEeHHHHHHHHHhc-CCCCCCCCcCCCCCceeEeee
Q psy3664 40 DHCCVSLQ-PYEHP----YCDKDGNIFELEALMGYLKQY-KHNPVTGKPLDVKSLIKLNFH 94 (504)
Q Consensus 40 ~~C~Lsl~-pl~~P----v~~~~G~lf~k~~Il~~L~~~-~~~Pvtg~~l~~kdLi~l~f~ 94 (504)
..|+||+. .+.+| +..+.||+|++.||..|+... ..||+.+.++...++.+.-|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 46999999 88888 578999999999999997654 679999999999999887653
No 73
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.78 E-value=2.5e-06 Score=68.09 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHh-------cCCCCCCCCcCCCCCcee
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ-------YKHNPVTGKPLDVKSLIK 90 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~-------~~~~Pvtg~~l~~kdLi~ 90 (504)
....|+||+..+.+|+..+.||.||+.||..|+.. ...||+++.++...+|.+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 35679999999999999999999999999999987 567888888888776643
No 74
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.77 E-value=3.9e-05 Score=61.10 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCccccCCCCCCCCc---eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEHP---YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P---v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l 91 (504)
.-..|+||+..+.+| +..+.||+|++.||..||.....||+++.++...++.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 356799999999876 446899999999999999999999999999988887653
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=3.6e-05 Score=58.78 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=35.6
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHh---cCCCCC
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQ---YKHNPV 78 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~---~~~~Pv 78 (504)
....|+||+..+.+||..+.||+|++.||..|+.. ...||+
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 45679999999999999999999999999999984 335665
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.69 E-value=2.3e-05 Score=89.26 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=50.2
Q ss_pred CCccccCCCCCCCCceecCCC-cEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDG-NIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G-~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l 91 (504)
...+|||+++.++|||+.++| +.|++.+|..||..+++||+|+.|++..+|+|-
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 366799999999999999997 799999999999999999999999999999874
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.63 E-value=4.1e-05 Score=70.29 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=54.0
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcCCCCCceeEeeeeC--CCCceeec
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPLDVKSLIKLNFHKN--AKGEYHCP 104 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l~~kdLi~l~f~~n--~~~~~~CP 104 (504)
...|+||+.++.+||.++.||+||+.||..|+.... .||+.+.++...+|++.++..+ .+-...||
T Consensus 18 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~ 86 (170)
T 3hcs_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (170)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECC
T ss_pred CCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCC
Confidence 457999999999999999999999999999998765 8999999999988877544332 12345676
No 78
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.62 E-value=7.1e-05 Score=55.29 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=40.7
Q ss_pred CccccCCCCCCCC----ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEH----PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~----Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
-..|+||++.+.+ +++.+.||+|+..||..|+.....||+.+.+++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3569999999976 788999999999999999999999999887764
No 79
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.62 E-value=3e-05 Score=58.96 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=47.7
Q ss_pred CceeeccceeeecCc---eeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 99 GEYHCPVLYKVFSKH---SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~---t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
+.+.||||...|.+. .+.+++.+|||+|+.+++++.... ...||+|..++...|++.|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCccceeee
Confidence 357899999999763 355667899999999999987643 4589999999999998865
No 80
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.62 E-value=4.8e-05 Score=64.33 Aligned_cols=53 Identities=9% Similarity=0.177 Sum_probs=45.3
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..|.||||...|.+- ++-+|||+|+..||.+.-. .+..||+|+.+++..|+|.
T Consensus 28 ~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp TTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEE
T ss_pred HhhCCcCccCcccCC----eECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceE
Confidence 469999999999986 3456999999999999874 3568999999999888875
No 81
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.61 E-value=5.7e-05 Score=58.41 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=41.3
Q ss_pred ccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 40 DHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
..|+||+..+.+| +..+.||+|++.||..|+.....||+.+.++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4699999999997 77899999999999999999999999988765
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=5.3e-05 Score=56.56 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHH---hcCCCCC
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLK---QYKHNPV 78 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~---~~~~~Pv 78 (504)
....|+||+..+.+|+..+.||+|++.||..|+. ....||+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 4567999999999999999999999999999964 3445664
No 83
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.56 E-value=3.9e-05 Score=62.85 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=44.8
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
.+|.||||...|.+- ++-+|||+|+..||.+.-.. +..||+|+.+++..+++.
T Consensus 13 ~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp TTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEE
T ss_pred hheECcccCchhcCC----eECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChHhcch
Confidence 479999999999986 44569999999999998743 568999999999887774
No 84
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.54 E-value=7.1e-05 Score=63.07 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCceeeccceeeecCceeEEEEcccc-ceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTG-NVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G-~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..+|.||||...|.+- ++-+|| |+|+..||++.-.. +..||+|..+++..|+|.
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhceE
Confidence 3579999999999986 456899 99999999998743 568999999999888774
No 85
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00015 Score=56.97 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=40.5
Q ss_pred CCccccCCCCCCCCcee---cCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 38 PFDHCCVSLQPYEHPYC---DKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~---~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
....|+||++.+.+|.. .+.||+|++.||.+||+....||+.+.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 35679999999998733 489999999999999999999999988654
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.51 E-value=4.5e-05 Score=66.26 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=49.7
Q ss_pred CccccCCCCCCCCc-------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeEe
Q psy3664 39 FDHCCVSLQPYEHP-------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 39 f~~C~Lsl~pl~~P-------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (504)
-..|+||+..+.+| +..+.||+|+..||.+||+....||+.+.++..++|+++-
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 34599999999987 8899999999999999999999999999999999998873
No 87
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.50 E-value=4.8e-05 Score=79.08 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=47.4
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHH-hcCCCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLK-QYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~-~~~~~Pvtg~~l~~kdLi~l 91 (504)
+..|+||++.+.+||++++||+||..||..|+. ....||+++.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 468999999999999999999999999999998 67889999998887766654
No 88
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=6e-05 Score=61.10 Aligned_cols=59 Identities=8% Similarity=0.214 Sum_probs=46.4
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhcc-CCcccCCCCcCCCCCCee
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKT-KSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~-k~~~c~v~~~~f~~~DiI 156 (504)
...+.||||...|.+..+...+-+|||+|+..|+.++.... ....||+|..++...||.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence 34588999999999866544455899999999999986432 246899999999887654
No 89
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.50 E-value=0.00027 Score=54.76 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCccccCCCCCCC---CceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCC
Q psy3664 38 PFDHCCVSLQPYE---HPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDV 85 (504)
Q Consensus 38 pf~~C~Lsl~pl~---~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~ 85 (504)
.-..|+||+..+. .++..+.||+|+..||..|+.....||+.+.++..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3567999999885 45778999999999999999999999999887654
No 90
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.48 E-value=2.1e-05 Score=68.03 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=38.4
Q ss_pred CccccCCCCCCCCceec-CCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCc
Q psy3664 39 FDHCCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~-~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdL 88 (504)
...|+||+..+.+||.. +.||.||+.||..|+. ..||+++.++...+|
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 45799999999999988 9999999999999986 456666655544333
No 91
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=8.2e-05 Score=58.86 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=41.4
Q ss_pred CccccCCCCCCCCc---eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCC
Q psy3664 39 FDHCCVSLQPYEHP---YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDV 85 (504)
Q Consensus 39 f~~C~Lsl~pl~~P---v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~ 85 (504)
-..|+||++.+.++ +..+.||+|+..||..||+.+..||+.+.++..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45699999999987 668899999999999999999999999887654
No 92
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.44 E-value=0.00013 Score=58.06 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=44.0
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..+.||||...|.+- | +-+|||+|+..||.+... .....||+|..++...+++.
T Consensus 7 ~~~~C~IC~~~~~~P---v-~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---V-IVSTGQTYERSSIQKWLD-AGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSCTTTSCCCSSE---E-EETTTEEEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEE
T ss_pred ccCCCCCccccccCC---E-EcCCCCeecHHHHHHHHH-HCcCCCCCCcCCCChhhCcc
Confidence 468999999999864 3 338999999999999873 23568999999999887664
No 93
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.44 E-value=6.2e-05 Score=58.57 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=48.2
Q ss_pred CCceeeccceeeecCc---eeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 98 KGEYHCPVLYKVFSKH---SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
++.+.||||...|.+. ...+++.+|||+|+.+|+.+..... ..||+|..++...|++.|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccChhheeec
Confidence 4578999999999763 3566788999999999999976432 489999999999888754
No 94
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.42 E-value=9.8e-05 Score=60.97 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=40.7
Q ss_pred CccccCCCCCCCC---ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEH---PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~---Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
-..|+||+..+.. ++..+.||+|+..||..||..+..||+++.++.
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4569999999887 777899999999999999999999999987764
No 95
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.41 E-value=8.9e-05 Score=63.39 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=37.9
Q ss_pred CCccccCCCCCCCCce------------------ecCCCcEEeHHHHHHHHH-----hcCCCCCCCCcCC
Q psy3664 38 PFDHCCVSLQPYEHPY------------------CDKDGNIFELEALMGYLK-----QYKHNPVTGKPLD 84 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv------------------~~~~G~lf~k~~Il~~L~-----~~~~~Pvtg~~l~ 84 (504)
+-+.|+||+.+|.+|+ +.++||+|+..||..||. .+..||+++.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3457999999998775 688999999999999994 3557887776554
No 96
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.38 E-value=4.3e-05 Score=68.61 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.0
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcC-CCCCCCCcC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYK-HNPVTGKPL 83 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~-~~Pvtg~~l 83 (504)
-..|+||+..+.+||.++.||+||+.||..|+.... .||+++.++
T Consensus 31 ~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 446999999999999999999999999999997543 455555444
No 97
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=0.00015 Score=60.39 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=43.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhcc----CCcccCC--CCcC-CCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKT----KSFKDLL--TDEP-FQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~----k~~~c~v--~~~~-f~~~DiI~ 157 (504)
..+|.||||...|.+- |.+..|||+|+..||.+.-... ....||+ |... +...|++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 3469999999999975 5455699999999999986442 3468999 5554 77777763
No 98
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.35 E-value=0.00013 Score=53.89 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=39.4
Q ss_pred ccccCCCCCCCC---ceecC-CCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 40 DHCCVSLQPYEH---PYCDK-DGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 40 ~~C~Lsl~pl~~---Pv~~~-~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
..|+||++.+.+ ++..+ .||+|+..||.+|++....||+.+.++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 469999999987 66665 8999999999999999999999887764
No 99
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=9.3e-05 Score=58.14 Aligned_cols=56 Identities=5% Similarity=-0.046 Sum_probs=45.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
+..+.||||...|.+. +.+.+|||+|+..||.+.... ...||+|..++...|++..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCccccccc
Confidence 3468899999999873 456799999999999987633 4579999999999887753
No 100
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.34 E-value=0.00021 Score=57.13 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=46.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhcc----CCcccCCCCcCCCCCCeeEecC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKT----KSFKDLLTDEPFQRKNIITLQD 160 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~----k~~~c~v~~~~f~~~DiI~lqd 160 (504)
...+.||||...|.+. ++-+|||+|+..|+.+..... ....||+|..++...++.....
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred ccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 3468899999999875 245899999999999876542 2678999999999888775443
No 101
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00012 Score=59.26 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=41.1
Q ss_pred CccccCCCCCCCC--------------c-eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCC
Q psy3664 39 FDHCCVSLQPYEH--------------P-YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKS 87 (504)
Q Consensus 39 f~~C~Lsl~pl~~--------------P-v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kd 87 (504)
-+.|+||++++.+ + +....||+|...||.+||+.+..||+.+.++...+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 4569999999977 4 33458999999999999999999999998876554
No 102
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.29 E-value=6.3e-05 Score=64.58 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=30.5
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHH
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLK 71 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~ 71 (504)
...|+||+..+.+||..++||.||..||..|+.
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE 47 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHh
Confidence 456999999999999999999999999999885
No 103
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=8.3e-05 Score=57.89 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=43.2
Q ss_pred CCccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCc
Q psy3664 38 PFDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSL 88 (504)
Q Consensus 38 pf~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdL 88 (504)
....|+||+..+.+ +..+.||+|++.||..|+.....||+.+.++...+.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 35679999999999 999999999999999999988888888777765554
No 104
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00022 Score=54.89 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCe
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~Di 155 (504)
...+.||||...|.+... -+|||+|+..|+.+... .....||+|..++..+||
T Consensus 13 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 457999999999987522 48999999999999863 345689999999998876
No 105
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.28 E-value=0.00015 Score=67.65 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
...|.||||...|.+- ++-+|||+|+..||...-..... .||+|+.+++..|+|+
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcc
Confidence 3579999999999985 34489999999999997644222 6999999999888875
No 106
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00028 Score=55.12 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=43.3
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc-cCCcccCCCCcCCCCCCe
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~~~~f~~~Di 155 (504)
...+.||||...|.+- +.+ +|||+|+..|+.+.... .....||+|..++..+||
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4568999999999853 333 99999999999998742 245689999999998875
No 107
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00029 Score=69.32 Aligned_cols=91 Identities=10% Similarity=0.174 Sum_probs=66.7
Q ss_pred EEeHHHHHHHHHhcCCCCCCCCcC--CCCCceeEeeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc
Q psy3664 60 IFELEALMGYLKQYKHNPVTGKPL--DVKSLIKLNFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK 137 (504)
Q Consensus 60 lf~k~~Il~~L~~~~~~Pvtg~~l--~~kdLi~l~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~ 137 (504)
+|..-..+.|+..+..+|+-+... .=.||+ + . .....+.||||...|.+- |.+..|||+|+..||.+....
T Consensus 143 ~~~~lk~~~~i~~~P~~~lPd~~~~~dDDDI~-v--~-~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~ 215 (267)
T 3htk_C 143 TLKILKVLPYIWNDPTCVIPDLQNPADEDDLQ-I--E-GGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQG 215 (267)
T ss_dssp HHHHHHHHHHHHHCTTBCCCCCSSTTCSSCCC-C--C-SSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTT
T ss_pred HHHHHHHccccccCCCCCCCCCCCCCCCccce-e--c-CCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHh
Confidence 566777778888887777654322 223332 2 1 123468999999999876 445689999999999998755
Q ss_pred cCCcccCC--CCcCCCCCCeeE
Q psy3664 138 TKSFKDLL--TDEPFQRKNIIT 157 (504)
Q Consensus 138 ~k~~~c~v--~~~~f~~~DiI~ 157 (504)
...|.||+ |.+++...|++.
T Consensus 216 ~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 216 YTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CSCEECSGGGCSCEECGGGEEE
T ss_pred CCCCCCCcccccCcCchhhCCc
Confidence 55689999 989998888774
No 108
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.21 E-value=0.00046 Score=56.54 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
...+.||||...|.+- |.+..|||+|+..||.+.........||+|..++.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3468999999999865 33433999999999998765445568999999984
No 109
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.15 E-value=0.00022 Score=56.34 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
...+.||||...|.+- |.+..|||+|+..||.+.........||+|..++...|.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 3468999999999874 3344499999999999987544446899999998877765
No 110
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.10 E-value=0.0002 Score=56.92 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=46.0
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
...+.||||...|.....++ +-+|||+|+..||.+... ....||+|..++...+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVR-QLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEE-ECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCEE-EeCCCCeecHHHHHHHHH--cCCcCcCcCCccCCcccCC
Confidence 34688999999998765544 447999999999999863 3358999999999988775
No 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.03 E-value=0.00026 Score=69.16 Aligned_cols=54 Identities=11% Similarity=0.275 Sum_probs=44.3
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..|.||||...|.+- ++-+|||+||..||.+.-... ...||+|..+++..++|.
T Consensus 207 ~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchhcCcc
Confidence 568999999999986 456799999999999876432 234999999999888774
No 112
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.03 E-value=0.00045 Score=59.03 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=40.3
Q ss_pred CccccCCCCCCCCc------------------eecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCC
Q psy3664 39 FDHCCVSLQPYEHP------------------YCDKDGNIFELEALMGYLKQYKHNPVTGKPLDV 85 (504)
Q Consensus 39 f~~C~Lsl~pl~~P------------------v~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~ 85 (504)
-+.|+||++.+.++ +..+.||+|...||.+||+.+..||+++.+..+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 35799999999976 336789999999999999999999999887653
No 113
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.00 E-value=0.00036 Score=51.41 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=42.0
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
+.+.||||...|.+....+.+.+|||+|..+++.+..... ..||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4678999999997766667788999999999999976433 58999988764
No 114
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.001 Score=52.37 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCCCceeEeeeeC--CCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 84 DVKSLIKLNFHKN--AKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 84 ~~kdLi~l~f~~n--~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
.++.|....|..+ ......||||...|.....++ ..+|||+|...||.+.... +..||+|-.++...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLR-VLPCNHEFHAKCVDKWLKA--NRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEE-EETTTEEEETTHHHHHHHH--CSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEE-EECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCCC
Confidence 3455655666553 245688999999998765544 4579999999999997633 34799998887653
No 115
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00031 Score=54.05 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=42.8
Q ss_pred CCceeeccceeeecCc---eeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 98 KGEYHCPVLYKVFSKH---SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~---t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
...+.||||...|.+. .+.+++.+|||+|+.+||++.... ...||+|..++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 4568899999999764 455677899999999999997643 4479999998865
No 116
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00061 Score=56.72 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=42.4
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
..+.||||...|.+. +.+.+|||+|+..|+.+... ....||+|..++...|++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCE
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChhhCC
Confidence 358899999999863 44568999999999999874 345899999998876544
No 117
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00043 Score=55.30 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=43.8
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc----cCCcccCCCCcCCCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK----TKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~----~k~~~c~v~~~~f~~~DiI~ 157 (504)
...+.||||...|.+- + +-+|||+|+..|+.++... .....||+|..++...|+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---L-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSC---B-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCc---e-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCc
Confidence 3468899999999764 2 2389999999999987543 23568999999999877653
No 118
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.90 E-value=0.00071 Score=61.71 Aligned_cols=53 Identities=8% Similarity=0.107 Sum_probs=42.6
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCe
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNI 155 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~Di 155 (504)
..+.||||...|.+- |.+.+|||+|+..||.+.... ....||+|..++...+.
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~ 105 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRS 105 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGG
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCccc
Confidence 468999999999863 556799999999999998643 35679999999975543
No 119
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.82 E-value=0.00036 Score=55.28 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc-----cCCcccCCCCcCCCCCCee
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK-----TKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~-----~k~~~c~v~~~~f~~~DiI 156 (504)
...+.||||...|.+-. +-+|||+|+..|+.+.... .....||+|..++...|+.
T Consensus 10 ~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL----SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCC----CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCee----ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 35689999999998742 2389999999999986543 1256899999999876654
No 120
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.00042 Score=54.13 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=41.7
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
...+.||||...|.+- + +-+|||+|+..|+.+.... ...||+|..++...+++
T Consensus 13 ~~~~~C~IC~~~~~~~---~-~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---V-SLPCKHVFCYLCVKGASWL--GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE---E-EETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC---E-EccCCCHHHHHHHHHHHHC--CCcCcCcCchhCHhhcc
Confidence 3568899999988764 3 3379999999999986533 35899999999876654
No 121
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.72 E-value=0.00096 Score=55.90 Aligned_cols=55 Identities=7% Similarity=0.183 Sum_probs=44.1
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..+.||||...|.+- |.+-+|||+|+..||.+..... ...||+|..++...+++.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHHHhHh
Confidence 358899999999863 4447999999999999876432 257999999998877764
No 122
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.00098 Score=53.34 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=39.3
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
+..+.||||...|.+- ++.+|||+|+..|+.+.... ...||+|..++.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3468999999999763 35699999999999998743 458999999986
No 123
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.68 E-value=0.0017 Score=54.85 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=41.1
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
..+.||||...|.+- |.+.+|||+|+..||.+.... ...||+|..++...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh--CCcCcCCCcccccc
Confidence 468899999999863 555699999999999998733 36899999988765
No 124
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.68 E-value=0.0018 Score=49.82 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=44.7
Q ss_pred CccccCCCCCCCCceec--CCCcE-EeHHHHHHHHHhcCCCCCCCCcCCCCCceeEe
Q psy3664 39 FDHCCVSLQPYEHPYCD--KDGNI-FELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~--~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~ 92 (504)
-..|.||+....+++.. +.||+ ||.+|+..|....+.||+.+.++. +++++-
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEE
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeee
Confidence 45699999999999876 99999 899999999998899999998774 556553
No 125
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.64 E-value=0.00065 Score=57.51 Aligned_cols=55 Identities=7% Similarity=0.159 Sum_probs=43.0
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhcc-CCcccCCCCcCCCCCCeeE
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKT-KSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~-k~~~c~v~~~~f~~~DiI~ 157 (504)
..+.||||...|.+- ++-+|||+|+..|+.+..... ....||+|..++...+++.
T Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 357899999998764 224899999999999976432 2368999999999877654
No 126
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.60 E-value=0.001 Score=48.97 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=41.1
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
+...|||+...|.+....+.+..|||+|...++.+... ....||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 45689999999988776676667999999999998763 3458999987763
No 127
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.57 E-value=0.0023 Score=49.14 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=43.8
Q ss_pred CccccCCCCCCCCceec--CCCcE-EeHHHHHHHHHhcCCCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYCD--KDGNI-FELEALMGYLKQYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~--~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l 91 (504)
-..|.||+....++++. +.||+ ||.+|+..|....+.||+.+.++. +++++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i 60 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKV 60 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEE
Confidence 45699999999999776 99998 999999999988889999998874 55555
No 128
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.56 E-value=0.00031 Score=61.21 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCce-----------------e-cCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCC
Q psy3664 40 DHCCVSLQPYEHPY-----------------C-DKDGNIFELEALMGYLKQYKHNPVTGKPLDVK 86 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv-----------------~-~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~k 86 (504)
+.|+||++.+.+|. + .++||+|...||.+||+.+..||+++.+..++
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 78999999998752 1 37899999999999999999999998876544
No 129
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00073 Score=52.40 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=43.0
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
...+.||||...|.+ ++.+|||+|+..|+.+... ....||+|..++...|.+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCCccc
Confidence 346789999999987 4568999999999998763 4568999999998776553
No 130
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.49 E-value=0.0017 Score=55.97 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 96 NAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 96 n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.-...+.||||...|.+- | .-+|||+|+..||.+.... ....||+|..++...+++
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 14 PLESKYECPICLMALREA---V-QTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLF 69 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCCcCChhhcCe---E-ECCcCChhhHHHHHHHHhh-CCCCCCCCCCCcCHHhcc
Confidence 335678999999999864 3 3489999999999987643 234799999999887765
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.48 E-value=0.0026 Score=49.80 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=40.4
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
....||||...|.....++. -+|||+|...||.+.... ...||+|..++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence 45789999999987665554 479999999999997643 2379999988754
No 132
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.46 E-value=0.0043 Score=50.95 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=41.0
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
+....||||...|.....++.+ +|||+|+..||.+... ....||+|-.++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 3568899999999876655544 5999999999999763 34489999887753
No 133
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.43 E-value=0.0014 Score=52.77 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=41.7
Q ss_pred CccccCCCCCCC--CceecC--CCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCceeEe
Q psy3664 39 FDHCCVSLQPYE--HPYCDK--DGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIKLN 92 (504)
Q Consensus 39 f~~C~Lsl~pl~--~Pv~~~--~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~l~ 92 (504)
-..|+||++|+. +++..+ .||.||+.||..++.. ...||+.+++....+++-.+
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 356999999995 455544 8999999999998743 46799999888877775443
No 134
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.41 E-value=0.0026 Score=49.05 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=40.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
+....||||...|......+ +-+|||+|...||.+.... ...||+|..++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVR-RLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEE-ECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEE-EeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 45678999999997654544 5579999999999987643 3479999887764
No 135
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.35 E-value=0.0027 Score=55.02 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=40.1
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
..+.||||...|.+- |. -+|||+|+..||..... .....||+|..++...
T Consensus 51 ~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---IT-TVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGRS 100 (124)
T ss_dssp HHTBCTTTSSBCSSE---EE-CTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCTT
T ss_pred cCCCCCcCChHHcCc---EE-eeCCCcccHHHHHHHHh-HCcCCCCCCCccCCCC
Confidence 458899999999864 32 39999999999988764 3455899999999873
No 136
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.34 E-value=0.00076 Score=50.45 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=37.2
Q ss_pred CccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVK 86 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~k 86 (504)
...|+||+..+.+|+..+.||.|++.||.. ....||+.+.++.+.
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 456999999999999999999999999977 245688877766554
No 137
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=57.32 Aligned_cols=51 Identities=4% Similarity=0.008 Sum_probs=41.3
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
..+.||||...|.+- ++-+|||+||..||.+.... ....||+|..++...+
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY 127 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC
Confidence 358899999999864 23599999999999998743 4457999999998764
No 138
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.20 E-value=0.0048 Score=46.71 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=35.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc-cCCcccCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLT 146 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~ 146 (504)
...+.||||...|.+- +.+ +|||+|+..+|.+.... .....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4568999999999864 333 99999999999998742 245579987
No 139
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.11 E-value=0.0037 Score=55.36 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=37.3
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
++.||||...|.+- | +-+|||+|+..|+.+... ....||+|..++..
T Consensus 53 ~~~C~iC~~~~~~~---~-~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---V-TLNCAHSFCSYCINEWMK--RKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---E-EETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---e-ECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCC
Confidence 47899999999763 3 448999999999998763 34579999888753
No 140
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.05 E-value=0.0064 Score=51.61 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=45.2
Q ss_pred ceeeccceeeecCce--------------eEEEEccccceecHHHHHHHhhc---cCCcccCCCCcCCCCCCeeEecCCC
Q psy3664 100 EYHCPVLYKVFSKHS--------------HLVAIETTGNVYSFEAVDQLNIK---TKSFKDLLTDEPFQRKNIITLQDPN 162 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t--------------~~v~i~~~G~V~s~~av~~l~~~---~k~~~c~v~~~~f~~~DiI~lqdp~ 162 (504)
+..||||...|.... .++.+.+|||+|...||.+.... .....||+|-..|... .-.|.|.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~--~g~qp~g 102 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK--TGTQPWG 102 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC--SSSCTTS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC--CCCCCCC
Confidence 458999999985432 45668899999999999987632 2356899999999754 3445444
Q ss_pred C
Q psy3664 163 E 163 (504)
Q Consensus 163 ~ 163 (504)
.
T Consensus 103 ~ 103 (114)
T 1v87_A 103 K 103 (114)
T ss_dssp S
T ss_pred e
Confidence 3
No 141
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.00 E-value=0.0022 Score=50.70 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=35.9
Q ss_pred CccccCCCCCCCCceecCCCcE-EeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNI-FELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
-..|+||+..+.+||..+.||+ ||..|+..| ..||+.+.++.
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 3469999999999999999999 999999887 67777776654
No 142
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.97 E-value=0.0037 Score=53.41 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=42.7
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
..+.||||...|.+- | .-+|||+|+..||.+.... ....||+|..++...|++
T Consensus 22 ~~~~C~IC~~~~~~p---~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILADP---V-ETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhcCc---E-EcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHhhcc
Confidence 458899999999764 2 3589999999999987643 245799999999987765
No 143
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.92 E-value=0.0011 Score=57.07 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=39.9
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.+.||||...|.+- |.+.+|||+|+..||..... ..||+|..++...|+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcccccc
Confidence 57899999999764 44458999999999988763 4799999998765543
No 144
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.0066 Score=47.94 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=35.0
Q ss_pred CccccCCCCCCCCceecCCCcE-EeHHHHHHHHHhcCCCCCCCCcCCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNI-FELEALMGYLKQYKHNPVTGKPLDV 85 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~~ 85 (504)
...|+||+..+.+||..+.||+ ||+.|+. ....||+.+.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAE----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHH----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhh----CCCCCccCCceecC
Confidence 3469999999999999999999 9999994 34667777766543
No 145
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.78 E-value=0.0039 Score=50.09 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCceeeccceeeecCceeEEEEc--cccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIE--TTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~--~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
..++.||||...|+..-. .+. +|||.|+..|+..+... ....||+|-++|...+++
T Consensus 9 ~~~~~CpICle~~~~~d~--~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI--NFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT--TCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccc--cccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 456889999998853211 123 49999999999998633 457899999999988775
No 146
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.77 E-value=0.0076 Score=46.14 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=38.4
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
....||||...+.+. +.+.+|||+|+..|+.+.... ...||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 356799999998753 356789999999999987633 347999999886
No 147
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.67 E-value=0.0077 Score=54.96 Aligned_cols=60 Identities=13% Similarity=0.280 Sum_probs=46.6
Q ss_pred eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 92 NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 92 ~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.|...-+..|.||||...|.+- | .-+|||+|+..|+.+.... +...||+|..++...+++
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p---v-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 10 EFDPPLESKYECPICLMALREA---V-QTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLF 69 (170)
T ss_dssp EESSCCCGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCE
T ss_pred hhccCCCCCCCCCCCChhhcCc---E-ECCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhhh
Confidence 3444446789999999999865 2 3589999999999997643 233799999999887765
No 148
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.54 E-value=0.026 Score=45.50 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=40.0
Q ss_pred CCccccCCCCCCC--CceecCC-----CcEEeHHHHHHHHHhcC--CCCCCCCcCCCCC
Q psy3664 38 PFDHCCVSLQPYE--HPYCDKD-----GNIFELEALMGYLKQYK--HNPVTGKPLDVKS 87 (504)
Q Consensus 38 pf~~C~Lsl~pl~--~Pv~~~~-----G~lf~k~~Il~~L~~~~--~~Pvtg~~l~~kd 87 (504)
.-..|+||+..+. +|++.+. +|.|-..||..||...+ .||+.+.++.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567999998874 5776665 49999999999999875 7999988776553
No 149
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.44 E-value=0.013 Score=44.89 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=40.5
Q ss_pred CceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
....|+||...+.+. .+++.+|||+ ++++++.++... .++||+|..++. ++|.|
T Consensus 6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~--~~i~i 60 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQ--LVIKV 60 (63)
T ss_dssp GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCC--EEEEE
T ss_pred cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhh--ceEEE
Confidence 356799998876543 2345699998 999999998743 468999999984 45543
No 150
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.009 Score=44.08 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc-cCCcccCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLT 146 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~ 146 (504)
...+.|||+...|.+. ++-+|||+|+.++|.+.... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3468899999999875 23589999999999998432 245679887
No 151
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.31 E-value=0.0077 Score=62.55 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=44.1
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEec
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQ 159 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lq 159 (504)
...||||...+.+ .++-+|||+||..|+.+.... ....||+|-.++...++|.+.
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEecC
Confidence 3689999888865 356799999999999887631 345899999999998877654
No 152
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.24 E-value=0.0048 Score=52.60 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=38.4
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
..+.||||...|.+- |.+ +|||+|+..||.+.... ....||+|..++..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 468999999999864 333 89999999999887632 35689999887753
No 153
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.21 E-value=0.013 Score=44.91 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred CceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCCCCeeEe
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~l 158 (504)
.+..|+||...+.+. ++...+|||+ ++++++..+.. ..+.||+|..++. ++|.|
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~--~~i~i 61 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQ--MIVLT 61 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCC--EEEEE
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchh--ceEee
Confidence 345799998877653 1213499999 79999999884 3568999999884 45544
No 154
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.07 E-value=0.0041 Score=55.54 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.||||...|.+- | .-+|||+|+..||.+... .....||+|..+....+
T Consensus 29 ~~~~~C~IC~~~~~~p---v-~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~ 80 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---F-QAQCGHRYCSFCLASILS-SGPQNCAACVHEGIYEE 80 (141)
T ss_dssp CGGGBCTTTCSBCSSE---E-ECTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCCCT
T ss_pred CcCcCCCCCChhhcCc---E-ECCCCCccCHHHHHHHHh-cCCCCCCCCCCcccccc
Confidence 5679999999999875 2 349999999999999863 34558999988754443
No 155
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.03 E-value=0.0089 Score=49.19 Aligned_cols=50 Identities=8% Similarity=0.105 Sum_probs=38.2
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhc---c---CCcccCC--CCcC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK---T---KSFKDLL--TDEP 149 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~---~---k~~~c~v--~~~~ 149 (504)
..+.||||...|... .++.+.+|||+|+.+|+.+.... . ....||. |...
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468899999888743 45556789999999999886532 1 2468999 9877
No 156
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.90 E-value=0.0075 Score=47.59 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=36.3
Q ss_pred CceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
..+.||||...+.+- ++-+|||+ |+..|++.+ ..||+|..++...
T Consensus 24 ~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 357899998887653 46799999 999999765 3799999998764
No 157
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.68 E-value=0.012 Score=47.19 Aligned_cols=51 Identities=6% Similarity=0.062 Sum_probs=36.8
Q ss_pred eeccceeeec-----------CceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 102 HCPVLYKVFS-----------KHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 102 ~CPvt~k~f~-----------~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
.|+||...|. +....+.+.+|||+|..+||++--.. ...||+|-.++...+
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCCEEE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcchhh
Confidence 3666666664 34446667789999999999997533 237999998876544
No 158
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.64 E-value=0.015 Score=46.66 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=41.4
Q ss_pred ceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCCCCcchhccc
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLT 170 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp~~~~~~~~~ 170 (504)
...|+||...+.+ +++.+|||+ |+..++..+ +.||+|-.++.. .|.+--|.+...-++.
T Consensus 18 ~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~--~~~i~~p~~~~~~~~~ 77 (79)
T 2yho_A 18 AMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL------QSCPVCRSRVEH--VQHVYLPTHTSLLNLT 77 (79)
T ss_dssp HTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC------SBCTTTCCBCCE--EEECBCTTCCC-----
T ss_pred CCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc------CcCCCCCchhhC--eEEEEeCcchhhhhhh
Confidence 3579999877664 356799999 999999865 389999999875 5666666655544443
No 159
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.51 E-value=0.0071 Score=49.80 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=29.4
Q ss_pred CccccCCCCCCCCcee---cCCCcEEeHHHHHHHHHh
Q psy3664 39 FDHCCVSLQPYEHPYC---DKDGNIFELEALMGYLKQ 72 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~---~~~G~lf~k~~Il~~L~~ 72 (504)
...|+||+..+..|++ .+.||.||++||..|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 3469999999999955 379999999999999975
No 160
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.21 E-value=0.07 Score=41.39 Aligned_cols=45 Identities=7% Similarity=-0.041 Sum_probs=37.3
Q ss_pred cCCccccCCCCCCCCceecCCCcE-EeHHHHHHHHHhcCCCCCCCCcCCC
Q psy3664 37 LPFDHCCVSLQPYEHPYCDKDGNI-FELEALMGYLKQYKHNPVTGKPLDV 85 (504)
Q Consensus 37 lpf~~C~Lsl~pl~~Pv~~~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~~ 85 (504)
.....|.||+....++|..+.||+ ||..|+. ....||+.+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHh----cCCCCCCCCcchhc
Confidence 346779999999999999999999 9999997 34678887776543
No 161
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.21 E-value=0.013 Score=60.10 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=35.2
Q ss_pred CccccCCCCCCCCceecCCCcE-EeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNI-FELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
-..|+||+..+.+||..++||+ ||..||..| ..||+++.++.
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 4579999999999999999999 999999866 56776666543
No 162
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.94 E-value=0.027 Score=43.81 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDP 161 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp 161 (504)
+....|+||...+.+ +++.||||+ |++.++..+ +.||+|-.++.. +|.|-.|
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~--~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE--SFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC--EECCCSS
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC------CCCCCCCcchhc--eEEeecC
Confidence 345789999877665 578999999 999999854 379999998854 5655444
No 163
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.24 E-value=0.012 Score=43.79 Aligned_cols=46 Identities=4% Similarity=-0.012 Sum_probs=36.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
...+.|||+...|.+- .+-+|||+|+..++.+ ....||+|..++..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 3467899999999864 3457999999999876 23479999988764
No 164
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=93.23 E-value=0.031 Score=44.73 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=34.3
Q ss_pred CccccCCCCCCCCceecCCCcE-EeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKDGNI-FELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~G~l-f~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
...|+||+..+.+||..+.||+ ||..|+..| ..||+.+.++.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 3569999999999999999999 999999755 36666666544
No 165
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.86 E-value=0.023 Score=44.69 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=35.5
Q ss_pred CceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
....||||...+.+- ++-+|||+ |+..|+..+ ..||+|-.++..
T Consensus 23 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 347899999877652 44599999 999999876 379999998865
No 166
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.34 E-value=0.097 Score=43.97 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=39.2
Q ss_pred eeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 102 HCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 102 ~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
.|+.|...|.-..+ +-||+|||+++|......+ +.-.||.|..++.+-+-+
T Consensus 3 fC~~C~~Pi~iygR---mIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGR---MIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEE---EETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEee---eccccccHHHHHHHHHHhc-cCCCCcCcCCeeeeeEEe
Confidence 59999998885533 4499999999999987643 333799999999765544
No 167
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.78 E-value=0.25 Score=41.45 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=48.0
Q ss_pred ccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHh-cCCCCCCCCcCCCCCceeEeeeeCCCCceeecc
Q psy3664 40 DHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQ-YKHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPV 105 (504)
Q Consensus 40 ~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~-~~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPv 105 (504)
.+|..|.-|+..= -+.|.+|+||+.|+..|.++ .+.||....++ .+|....+ ++-|+|+.
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V-----~rVe~~~~-~~if~C~~ 63 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV-----QRIEQCTR-GSLFMCSI 63 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC-----SEEEEEEG-GGCCCCCC
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCee-----eeeEEecc-CCEEECCC
Confidence 4799999998854 67899999999999999854 68899988765 44555555 66799994
No 168
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.13 Score=52.96 Aligned_cols=54 Identities=7% Similarity=0.141 Sum_probs=46.1
Q ss_pred eeeccceeeecCceeEEEEccccce--ecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNV--YSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V--~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..||+++..|..- |=-..|-|+ |..+++-+++.....|+||+|++.+.-.|++.
T Consensus 250 L~CPlS~~ri~~P---vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYP---SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSE---EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCcccccccc---CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 6799999998764 224578887 99999999998888999999999999999885
No 169
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=89.85 E-value=0.29 Score=41.44 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=37.5
Q ss_pred ceeeccceeeecCc--------------eeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 100 EYHCPVLYKVFSKH--------------SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 100 ~~~CPvt~k~f~~~--------------t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
.-.|+||...|... --.+++-+|||+|...||.+--.. +..||+|-.+|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 34699998888753 113556799999999999997532 457999998874
No 170
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.73 E-value=0.24 Score=50.79 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=45.5
Q ss_pred eeeccceeeecCceeEEEEccccce--ecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNV--YSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V--~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
..||+++..|.-- +--..|-|+ |..+++=+++.....|+||+|++++.-+|++.
T Consensus 216 L~CPlS~~ri~~P---~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIP---CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSE---EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccC---CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 5799999988754 223578888 99999999998888999999999999999885
No 171
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.57 E-value=0.46 Score=37.65 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=38.8
Q ss_pred CCccccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhc--CCCCCCCCcCC
Q psy3664 38 PFDHCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQY--KHNPVTGKPLD 84 (504)
Q Consensus 38 pf~~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~--~~~Pvtg~~l~ 84 (504)
.-..|+||...+..= .|...|+.|-..||..||+.. ..||+.+.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 356799999999743 445679999999999999988 78999987654
No 172
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=88.66 E-value=0.79 Score=39.36 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=66.7
Q ss_pred ccccCCCCCCC---CceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCC-ceeE---eeeeCCCCceeeccceeeecC
Q psy3664 40 DHCCVSLQPYE---HPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKS-LIKL---NFHKNAKGEYHCPVLYKVFSK 112 (504)
Q Consensus 40 ~~C~Lsl~pl~---~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kd-Li~l---~f~~n~~~~~~CPvt~k~f~~ 112 (504)
..|..|..||. .+....+|.+||..+...-....++|...++++...+ ++.. .|+.+ -|.|-.+.+.|..
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~---CF~C~~C~~~L~~ 106 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLE---CFKCAACQKHFCV 106 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGG---GCBCTTTCCBCCT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECcc---CcccCCCCCCCCC
Confidence 35888999996 3677889999999998776554447999999887655 3332 34433 5789999999965
Q ss_pred ceeEEEEccccceecHHHHHHHh
Q psy3664 113 HSHLVAIETTGNVYSFEAVDQLN 135 (504)
Q Consensus 113 ~t~~v~i~~~G~V~s~~av~~l~ 135 (504)
...++.. -|.+|+..+..++-
T Consensus 107 g~~f~~~--~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 107 GDRYLLI--NSDIVCEQDIYEWT 127 (131)
T ss_dssp TCEEEEE--TTEEEEGGGHHHHH
T ss_pred CCEEEEE--CCEEEcHHHHHHHh
Confidence 5555433 59999998888765
No 173
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=88.40 E-value=1.5 Score=40.47 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=69.9
Q ss_pred cccCCCCCCCCc-eecCCCcEEeHHHHHHHHHhcC---------------------------------------------
Q psy3664 41 HCCVSLQPYEHP-YCDKDGNIFELEALMGYLKQYK--------------------------------------------- 74 (504)
Q Consensus 41 ~C~Lsl~pl~~P-v~~~~G~lf~k~~Il~~L~~~~--------------------------------------------- 74 (504)
.|..|..+|..- +...+|.+||..+...-.....
T Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (192)
T 1b8t_A 36 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGS 115 (192)
T ss_dssp BCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred cCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCccccccccCCC
Confidence 488999999875 6677899999999887664321
Q ss_pred -CCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 75 -HNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 75 -~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
.|+..++++...++|.. .|+. .-|.|..|.+.|.+.. ++ ..-|.+|+..+..++-.. +|..|+.+
T Consensus 116 ~~C~~C~~~I~~~~~v~a~~~~~H~---~CF~C~~C~~~L~~~~-~~--~~~g~~yC~~cy~~~f~~----kc~~C~~~ 184 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIGAGKSWHK---SCFRCAKCGKSLESTT-LA--DKDGEIYCKGCYAKNFGP----KGFGFGQG 184 (192)
T ss_dssp EECTTTSCEECSSSCEEETTEEECT---TTCBCTTTCCBCCSSS-EE--EETTEEEEHHHHHHHTCC----CCCCCCCC
T ss_pred CcCCCCCCEecCcEEEecCCCccch---hcCCccccCCCCCCCc-cc--ccCCEEeCHHHHHHhcCC----cCCCCCCc
Confidence 15556666655454432 2232 2578999999997643 33 457999999999887633 68888876
No 174
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.26 E-value=0.39 Score=49.39 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCcee-cCCCcE--EeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecC
Q psy3664 40 DHCCVSLQPYEHPYC-DKDGNI--FELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSK 112 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~-~~~G~l--f~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (504)
-.||||..++..||= ..+-|+ ||.+.+|.+... .+.|.||||.+.+.-
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~-------------------------~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ-------------------------IPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH-------------------------SCCCBCTTTCCBCCG
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhc-------------------------CCceeCCCCCcccCH
Confidence 459999999999965 445776 999999998753 247899999887764
No 175
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=88.08 E-value=0.12 Score=52.94 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=35.7
Q ss_pred CceeeccceeeecCceeEEEEccccce-ecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNV-YSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V-~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
.+..||||...+.+ .| +-+|||+ ||..|+..+ ..||+|-.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v-~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VV-FIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EE-EETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eE-EcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45789999988865 23 4499999 999999876 379999999864
No 176
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=85.75 E-value=0.18 Score=51.41 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=36.3
Q ss_pred ccccCCCCCCCC----c--eec--CCCcEEeHHHHHHHHHhc-----------CCCCCCCCcCC
Q psy3664 40 DHCCVSLQPYEH----P--YCD--KDGNIFELEALMGYLKQY-----------KHNPVTGKPLD 84 (504)
Q Consensus 40 ~~C~Lsl~pl~~----P--v~~--~~G~lf~k~~Il~~L~~~-----------~~~Pvtg~~l~ 84 (504)
.-|+||+.-+.+ | +|. .+||.|-..||.+||+.. |.||.++++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 359999988776 6 554 679999999999999863 67888888765
No 177
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=85.66 E-value=3.1 Score=38.43 Aligned_cols=22 Identities=9% Similarity=-0.153 Sum_probs=19.6
Q ss_pred eEEEEeecCCChhHHHHHHHHh
Q psy3664 349 RDILDTFKREYKPTEAKVEEKV 370 (504)
Q Consensus 349 ~I~IeL~~d~aP~t~~NF~~L~ 370 (504)
.++.+|..|.||+||+.|.++.
T Consensus 34 ~~~A~Lldd~APkTcaA~~~~L 55 (188)
T 3kop_A 34 TCKALLLDDVAPRTSKAVWDAL 55 (188)
T ss_dssp EEEEEECTTTSHHHHHHHHHHC
T ss_pred EEEEEEccccChHHHHHHHHhC
Confidence 4789999999999999999864
No 178
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=85.57 E-value=0.43 Score=44.05 Aligned_cols=112 Identities=10% Similarity=0.196 Sum_probs=72.0
Q ss_pred cccCCCCCCCC---ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCC-ceeE---eeeeCCCCceeeccceeeecCc
Q psy3664 41 HCCVSLQPYEH---PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKS-LIKL---NFHKNAKGEYHCPVLYKVFSKH 113 (504)
Q Consensus 41 ~C~Lsl~pl~~---Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kd-Li~l---~f~~n~~~~~~CPvt~k~f~~~ 113 (504)
.|..|..+|.. +....+|.+||+.+...-+...++|+..++++...+ ++.. .|+.+ -|.|-.|.+.|...
T Consensus 34 ~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~---CF~C~~C~~~L~~g 110 (188)
T 1rut_X 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLK---CFTCSTCRNRLVPG 110 (188)
T ss_dssp BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGG---GCBCTTTCCBCCTT
T ss_pred ccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCC---CCeECCCCCCCCCC
Confidence 48899999985 777889999999987765543336999999887655 3333 34433 58899999999754
Q ss_pred eeEEEEccccceecHHHHHHHhhccCCcccCCCCc----CCCCCCeeEecCC
Q psy3664 114 SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDE----PFQRKNIITLQDP 161 (504)
Q Consensus 114 t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~----~f~~~DiI~lqdp 161 (504)
..++. .-|.+|+..+..++..+ +|.-.+. ..+-.|+.++-.|
T Consensus 111 ~~f~~--~~g~~yC~~c~~~~~~~----~~~~~g~~~~~~~~~~~v~vvgep 156 (188)
T 1rut_X 111 DRFHY--INGSLFCEHDRPTALIN----GHLNSGGSGGSGGSGGDVMVVGEP 156 (188)
T ss_dssp CEEEE--ETTEEEEGGGCCTTTC--------------------CCCEECCCC
T ss_pred CeEEE--ECCeEECHHHHHHHhcc----cccccCCCCcccccCCcccccCCC
Confidence 44443 35889999888765532 2333222 2345666666555
No 179
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.46 E-value=0.71 Score=47.26 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=37.1
Q ss_pred cccCCCCCCCCcee-cCCCcE--EeHHHHHHHHHhcCCCCCCCCcCCCCCceeEeeeeCCCCceeeccceeeecC
Q psy3664 41 HCCVSLQPYEHPYC-DKDGNI--FELEALMGYLKQYKHNPVTGKPLDVKSLIKLNFHKNAKGEYHCPVLYKVFSK 112 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~-~~~G~l--f~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l~f~~n~~~~~~CPvt~k~f~~ 112 (504)
.||||...+..|+= ..+-|+ ||.+.+|...... +.|.||||.+.+.-
T Consensus 217 ~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~-------------------------~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 217 MCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK-------------------------PTWICPVCDKKAAY 266 (360)
T ss_dssp BCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS-------------------------CCCBCTTTCSBCCG
T ss_pred eCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC-------------------------CCeECCCCCcccCH
Confidence 59999999999965 445777 9999999987642 35888888777653
No 180
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.29 E-value=0.56 Score=37.53 Aligned_cols=55 Identities=13% Similarity=0.009 Sum_probs=41.9
Q ss_pred CCceeeccceeeecCceeEEEEcccc-----ceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTG-----NVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G-----~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
...-.|+||..+|.....+ +.||+ |+|-.+||++-........||+|..+|.-..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456899999888765554 57886 9999999999664444568999999986543
No 181
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=82.57 E-value=4.7 Score=36.21 Aligned_cols=91 Identities=5% Similarity=0.141 Sum_probs=66.3
Q ss_pred ccccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCce-eE---eeeeCCCCceeeccceeeecCcee
Q psy3664 40 DHCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLI-KL---NFHKNAKGEYHCPVLYKVFSKHSH 115 (504)
Q Consensus 40 ~~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi-~l---~f~~n~~~~~~CPvt~k~f~~~t~ 115 (504)
..|..|..+|..-....+|.+||+.+...-. ..+|...++++...+++ .. .|+.+ -|.|-.|.+.|.....
T Consensus 34 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~~v~~a~~~~~H~~---CF~C~~C~~~L~~g~~ 108 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQVVRRAQDFVYHLH---CFACVVCKRQLATGDE 108 (169)
T ss_dssp SBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCTTSEEEEETTEEEEGG---GCBCTTTCCBCCTTCE
T ss_pred CccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCCCcEEEEcCCceEeeC---CCcCCCCCCCCCCCCc
Confidence 3588999999875446789999999876543 34688888888776644 21 34433 5889999999975444
Q ss_pred EEEEccccceecHHHHHHHhh
Q psy3664 116 LVAIETTGNVYSFEAVDQLNI 136 (504)
Q Consensus 116 ~v~i~~~G~V~s~~av~~l~~ 136 (504)
++ +..-|.+|+..+..++..
T Consensus 109 f~-~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 109 FY-LMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp EE-ECTTSCEEEHHHHHHHHH
T ss_pred eE-EccCCeEECHHHHHHHhh
Confidence 43 455789999999998863
No 182
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=80.54 E-value=0.33 Score=41.91 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred eeeccceeeecCce--------------eEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 101 YHCPVLYKVFSKHS--------------HLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 101 ~~CPvt~k~f~~~t--------------~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
=.|+||...|.+.- -.+++-+|||+|...||.+--.. ...||+|-.+|.-
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 36999988886421 13344589999999999985422 3479999988753
No 183
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=79.58 E-value=4.6 Score=36.71 Aligned_cols=89 Identities=6% Similarity=0.157 Sum_probs=63.2
Q ss_pred cccCCCCCCCCceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCce-eE---eeeeCCCCceeeccceeeecCceeE
Q psy3664 41 HCCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLI-KL---NFHKNAKGEYHCPVLYKVFSKHSHL 116 (504)
Q Consensus 41 ~C~Lsl~pl~~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi-~l---~f~~n~~~~~~CPvt~k~f~~~t~~ 116 (504)
.|..|..||..-....+|.+||+.+...-+ ..+|...++++...+++ .. .|+. .-|.|-.|.+.|.....+
T Consensus 89 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~~~v~~a~~~~~H~---~CF~C~~C~~~L~~g~~f 163 (182)
T 2jtn_A 89 KCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQVVRRAQDFVYHL---HCFACVVCKRQLATGDEF 163 (182)
T ss_dssp SCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCCSSCCCCEETTEECCT---TTCCCTTTCCCCCTTCEE
T ss_pred ccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccCCCceEEecCCCCEEe---CCCcCCCCCCCCCCCCce
Confidence 488889998865345789999988765422 24688888888766543 21 3333 358899999999855555
Q ss_pred EEEccccceecHHHHHHHh
Q psy3664 117 VAIETTGNVYSFEAVDQLN 135 (504)
Q Consensus 117 v~i~~~G~V~s~~av~~l~ 135 (504)
+ +..-|.+|+..+..+++
T Consensus 164 ~-~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 164 Y-LMEDSRLVCKADYETAK 181 (182)
T ss_dssp E-ECTTSCEECHHHHHHHT
T ss_pred E-EccCCEEECHHHHHHhh
Confidence 4 44578999999998775
No 184
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=79.35 E-value=5 Score=36.12 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=25.0
Q ss_pred eEEEeeeCceeEEEEeecCCChhHHHHHHHHh
Q psy3664 339 SRLKTVTNETRDILDTFKREYKPTEAKVEEKV 370 (504)
Q Consensus 339 V~l~~~T~~G~I~IeL~~d~aP~t~~NF~~L~ 370 (504)
++| .-....++++|+.+.||+||..|+++.
T Consensus 32 I~i--~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 32 LRI--RFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp EEE--EETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred EEE--EECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 555 556678999999999999999998864
No 185
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=76.34 E-value=1.1 Score=32.91 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|++.|+... .+..+-...+.++|.+|++.|...+
T Consensus 12 ~k~~~C~~C~k~F~~~~---------------~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLE---------------ANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHH---------------HHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHH---------------HhHhhcCCCCCEECCCCCCccccCc
Confidence 45699999999997532 2223333346789999999998655
No 186
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.54 E-value=2.5 Score=33.38 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=38.0
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
..-.|+||+..|..... -..|||.|-..||.+.-.....-.||+|..++.-
T Consensus 14 ~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34569999999985422 2389999999999987643323579999988763
No 187
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=72.93 E-value=4.2 Score=33.93 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=42.1
Q ss_pred CccccCCCCCCCCcee--cCC----CcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE
Q psy3664 39 FDHCCVSLQPYEHPYC--DKD----GNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL 91 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~--~~~----G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l 91 (504)
.-.|||+|..-+.=|. ... =.|||+.++.+-+.....+|++++|++..=||.-
T Consensus 27 ~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~~ 85 (102)
T 2kkx_A 27 AIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVKH 85 (102)
T ss_dssp GGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEECT
T ss_pred HcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEech
Confidence 3459999988776543 111 2599999999999999999999999998877643
No 188
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.45 E-value=1.8 Score=35.48 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcC-----CCCCCCCcCCCCCceeEeee----eCCCCceeeccceeeecCceeEEEEccccceecHHHHHH
Q psy3664 63 LEALMGYLKQYK-----HNPVTGKPLDVKSLIKLNFH----KNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQ 133 (504)
Q Consensus 63 k~~Il~~L~~~~-----~~Pvtg~~l~~kdLi~l~f~----~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~ 133 (504)
+..+..+++.+. .|++++.....+.-+..+.. ......|.|++|.+.|.....+. .=..
T Consensus 20 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~------------~H~~ 87 (124)
T 2dlq_A 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR------------LHMV 87 (124)
T ss_dssp HHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH------------HHHH
T ss_pred HHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH------------HHHH
Confidence 334444554432 35566655443333333222 12345689999999887532110 0001
Q ss_pred HhhccCCcccCCCCcCCCCC
Q psy3664 134 LNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 134 l~~~~k~~~c~v~~~~f~~~ 153 (504)
.-...+.+.|.+|++.|...
T Consensus 88 ~h~~~~~~~C~~C~~~f~~~ 107 (124)
T 2dlq_A 88 SHTGEMPYKCSSCSQQFMQK 107 (124)
T ss_dssp HHSSSCSEECSSSCCEESSH
T ss_pred HcCCCCCccCCCccchhCCH
Confidence 11234568999999988754
No 189
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=70.48 E-value=2.7 Score=31.33 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
+-.|.|++|++.|+....+. .=...-...+.+.|.+|++.|...
T Consensus 2 EKpy~C~~C~k~F~~~~~L~------------~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLS------------RHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCCEECTTTCCEESSHHHHH------------HHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCCccCCCCCCEeCCHHHHH------------HHHHHhCCCcCeECCCCCCCcCCH
Confidence 34699999999998642211 111122345789999999999864
No 190
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=70.10 E-value=1.3 Score=35.67 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=28.9
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
..|.|++|++.|.....+. .=...-...+.+.|.+|++.|...+
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~------------~H~~~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQE------------RHLRLLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp TTEECTTSCCEESSHHHHH------------HHHHTTSCSSSEECTTSSCEESSHH
T ss_pred CCEECCCCCCCcCcHHHHh------------hhhhhccCCCccCCCCCCCEeCCHH
Confidence 4599999999998642111 0011112356789999999998754
No 191
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=69.89 E-value=3.1 Score=47.68 Aligned_cols=54 Identities=11% Similarity=0.245 Sum_probs=44.7
Q ss_pred CCceeeccceeeecCceeEEEEcccc-ceecHHHHHHHhhccCCcccCCCCcCCCCCCeeE
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTG-NVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIIT 157 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G-~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~ 157 (504)
...|+|||+...|.+- ++-++| ..|-.++|++--.. +-.||++..|++..|+|+
T Consensus 889 P~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEE
T ss_pred cHHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccc
Confidence 3579999999999997 567887 68999999986533 347999999999988884
No 192
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=69.60 E-value=3.6 Score=30.91 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=32.6
Q ss_pred CccccCCCCCCCCceecCC---C--cEEeHHHHHHHHHhc--CCCCCCCCcCCC
Q psy3664 39 FDHCCVSLQPYEHPYCDKD---G--NIFELEALMGYLKQY--KHNPVTGKPLDV 85 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~~---G--~lf~k~~Il~~L~~~--~~~Pvtg~~l~~ 85 (504)
-..|.||+....+|.+.|. | ..|=..||..||... ..||+.+.+..+
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3568999866555544442 3 479999999999763 567877776654
No 193
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=65.48 E-value=0.43 Score=38.40 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCCCCCCcCCCCCceeEeeeeCC----------------CCceeeccceeeecCc
Q psy3664 75 HNPVTGKPLDVKSLIKLNFHKNA----------------KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l~f~~n~----------------~~~~~CPvt~k~f~~~ 113 (504)
+||++|.+|...+||.--+.... +=.|.||+|+.+|-+.
T Consensus 10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~ 64 (95)
T 2k5c_A 10 KCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK 64 (95)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred cCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence 58999999988888765333321 1226788888888654
No 194
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=64.55 E-value=3 Score=29.28 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=26.6
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
..|.|++|++.|.....+. .=...-...+.+.|++|++.|...
T Consensus 3 ~~~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN------------IHLRTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH------------HHHHHHHCCCCEECSSSSCEESSH
T ss_pred CCccCCCCcchhCChHHHH------------HHHHHcCCCCCcCCCCCcchhCCH
Confidence 3589999999998642211 001112235678999999998754
No 195
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=63.99 E-value=4.3 Score=30.23 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=28.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
+..|.|++|.+.|.....+. .=...-...+.++|.+|++.|...
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~------------~H~~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILV------------QHQRVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CCCEECSSSCCEESSHHHHH------------HHHHGGGCSCCEECSSSCCEESSH
T ss_pred CCCccCCCCCCccCCHHHHH------------HHHHhcCCCCCeECCCCCcccCCH
Confidence 45699999999998542211 001112234678999999998754
No 196
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=63.01 E-value=2.6 Score=30.29 Aligned_cols=12 Identities=0% Similarity=-0.100 Sum_probs=10.2
Q ss_pred cCCcccCCCCcC
Q psy3664 138 TKSFKDLLTDEP 149 (504)
Q Consensus 138 ~k~~~c~v~~~~ 149 (504)
+..|+||+|+.+
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 578999999975
No 197
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=62.78 E-value=9.7 Score=30.58 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=31.2
Q ss_pred CccccCCCCCCCCc--eecCC--CcEEeHHHHHHHHHhcC
Q psy3664 39 FDHCCVSLQPYEHP--YCDKD--GNIFELEALMGYLKQYK 74 (504)
Q Consensus 39 f~~C~Lsl~pl~~P--v~~~~--G~lf~k~~Il~~L~~~~ 74 (504)
--+|.||.+-|++- |=||. +|-||..|--.+|+.++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~ 54 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQG 54 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcC
Confidence 45799999999987 55775 99999999999999874
No 198
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=59.57 E-value=7.7 Score=27.16 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=27.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQR 152 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~ 152 (504)
+..|.|++|.+.|.....+. .=+...-...+.++|.+|++.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~-----------~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLN-----------GHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSHHHHH-----------HHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCHHHHH-----------HHHHHhcCCCCCccCCCCCCCCCC
Confidence 34599999999998532111 001111223567899999999964
No 199
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=58.83 E-value=26 Score=29.32 Aligned_cols=71 Identities=6% Similarity=-0.044 Sum_probs=51.4
Q ss_pred CCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 74 KHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 74 ~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
..|+..++++....++.. .|+. .-|.|..+.+.|.+. .++ ..-|.+|+..+..++... +|..|++++
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~---~CF~C~~C~~~L~~~-~f~--~~~g~~yC~~cy~~~~~~----~C~~C~~~I 73 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHL---KHFCCFDCDSILAGE-IYV--MVNDKPVCKPCYVKNHAV----VCQGCHNAI 73 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECG---GGSBCTTTCCBCTTS-EEE--EETTEEEEHHHHHHHSCC----BCTTTCSBC
T ss_pred CCCccCCCEeCCceEEeeCCCCccC---CCCCcCCCCCCCCcC-EEE--eECCEEechHHhCcCcCc----cCcccCCcC
Confidence 356677777776655543 3333 258899999999864 333 357999999999987643 799999999
Q ss_pred CCCC
Q psy3664 151 QRKN 154 (504)
Q Consensus 151 ~~~D 154 (504)
...+
T Consensus 74 ~~~~ 77 (126)
T 2xqn_T 74 DPEV 77 (126)
T ss_dssp CTTS
T ss_pred CcCc
Confidence 8754
No 200
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.65 E-value=1.7 Score=32.03 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=30.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCee
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNII 156 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI 156 (504)
+..|.|++|++.|.....+.. .+.+.|.+|++.|....-.
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~-------------------~~~~~C~~C~~~f~~~~~l 55 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR-------------------RKTPMCEKCRKDSCQEAAL 55 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC-------------------SSSCCCHHHHHTCSCCCSS
T ss_pred CCCeeCCcccchhCCHHHhCc-------------------CCCCCCCCCChhhcCHHHH
Confidence 456999999999987654432 4568999999999865433
No 201
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=58.43 E-value=6 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHh-hccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLN-IKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~-~~~k~~~c~v~~~~f~~~ 153 (504)
+..|.|++|++.|.....+. .=+...- ...+.+.|++|++.|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~-----------~H~~~~H~~~~~~~~C~~C~k~f~~~ 53 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFC-----------RHYVTSHKRNVKVYPCPFCFKEFTRK 53 (66)
T ss_dssp TTEEECTTTCCEESSHHHHH-----------HHHHHHSSSSCCCEECTTTCCEESCH
T ss_pred CcceECCCCcchhCCHHHHH-----------HHHHHHcCCCCcCeECCCCCCccCCH
Confidence 45799999999998642111 0011101 134678999999999754
No 202
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.81 E-value=5.1 Score=29.90 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
...|.|++|.+.|.....+. .=...-...+.++|.+|++.|...
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~------------~H~~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA------------SHKTVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH------------HHHHHHCCCCSEECTTTCCEESCH
T ss_pred CCCeECCCCCceeCCHHHHH------------HHHHHcCCCCCEECCCCCchhCCH
Confidence 45699999999998642211 001112234668999999999764
No 203
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=57.69 E-value=4.5 Score=28.30 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.5
Q ss_pred eeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 101 YHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 101 ~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
|.|++|++.|.....+. .=...-...+.+.|.+|++.|...
T Consensus 2 ~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK------------KHIRTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CBCTTTCCBCSSHHHHH------------HHHHHTSSCCCEECSSSSCEESSH
T ss_pred CcCCCCcCcCCCHHHHH------------HHHHhcCCCCCccCCCCCchhcCH
Confidence 78999999987542211 001111234568999999998754
No 204
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.41 E-value=7.6 Score=31.27 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=28.2
Q ss_pred CCceeeccceeee-cCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVF-SKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f-~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
...|.|++|.+.| .....+. .=...- ..+.+.|.+|++.|...
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~------------~H~~~h-~~k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLK------------KHMENC-KQEMFTCHHCGKQLRSL 75 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHH------------HHHHHH-CCCCCCCSSSCCCCSSH
T ss_pred CCCcCCCCCCCCcccCHHHHH------------HHHHHH-CCCCeECCCCCCeeCCH
Confidence 4569999999999 7542211 001111 34678999999999764
No 205
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.42 E-value=5.7 Score=29.26 Aligned_cols=43 Identities=12% Similarity=0.005 Sum_probs=28.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHh--hccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLN--IKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~--~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|.+.|.....+ ..-+. ...+.++|.+|++.|...+
T Consensus 7 ~~~~~C~~C~k~f~~~~~L--------------~~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAAL--------------RIHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp CCSEECSSSSCEESSHHHH--------------HHHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCCeECCCCCcccCCHHHH--------------HHHHHHcCCCCCEeCCCCCCccCCHH
Confidence 4569999999999864221 11111 1345689999999997543
No 206
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=55.89 E-value=11 Score=32.36 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=18.1
Q ss_pred CCceeEeeeeCCCCceeeccceeeecCc
Q psy3664 86 KSLIKLNFHKNAKGEYHCPVLYKVFSKH 113 (504)
Q Consensus 86 kdLi~l~f~~n~~~~~~CPvt~k~f~~~ 113 (504)
+-+-.....-+++-.|.|++|++.|...
T Consensus 8 ~h~~h~~~~h~Gek~y~C~~C~k~F~~~ 35 (133)
T 2lt7_A 8 KHDDHYELIVDGRVYYICIVCKRSYVCL 35 (133)
T ss_dssp CCSSEEEEEETTEEEEEETTTCCEESCH
T ss_pred HHHhhceeecCCCcCeECCCCCCCcCCH
Confidence 3333333344555569999999999864
No 207
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=55.19 E-value=6 Score=29.24 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=28.5
Q ss_pred CCCceeecc--ceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 97 AKGEYHCPV--LYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 97 ~~~~~~CPv--t~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
....|.||+ |++.|.....+. .=...-...+.+.|.+|++.|...+
T Consensus 16 ~~~~~~C~~~~C~k~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 16 KMRPYACPVESCDRRFSRSDELT------------RHIRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CCCCEECSSTTBCCEESSHHHHH------------HHHHHHHCCCCEECTTTCCEESCHH
T ss_pred CCCccCCcCCCCCCccCCHHHHH------------HHHHhhCCCCCeECCCCCchhCCHH
Confidence 345699985 999988542111 0011122356789999999997643
No 208
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.99 E-value=11 Score=31.85 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=54.0
Q ss_pred CCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCc-eeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 74 KHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKH-SHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 74 ~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~-t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
..|+..++++....++.. .|+. .-|.|..|.+.|.+. ..++ ..-|.+|+..++.++-.+ .-+|-.|+++
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~---~CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~--~~~C~~C~~~ 78 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHS---RCLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGN--SGAGGSGGHM 78 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECH---HHHCCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCC--CCSSSCSSCC
T ss_pred CCCcccCCEeCCcEEEEECCceeHh---hCCCcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCC--CCccccCCCC
Confidence 356666777766554432 2332 247799999999742 3333 457999999999987632 1269999999
Q ss_pred CCCCCeeEecC
Q psy3664 150 FQRKNIITLQD 160 (504)
Q Consensus 150 f~~~DiI~lqd 160 (504)
+...+|+.+.+
T Consensus 79 I~~~~~~~~g~ 89 (122)
T 1m3v_A 79 GSGGDVMVVGE 89 (122)
T ss_dssp SCCEESSSSSS
T ss_pred cCchheEEcCC
Confidence 99887765543
No 209
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=53.59 E-value=28 Score=30.95 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=51.4
Q ss_pred CCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 74 KHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 74 ~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
..|...++++.-..++.. .|+. .-|.|..|.+.|.+.. + . .-|.+|+..++.++... +|..|++++
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~---~CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f~~----~C~~C~~~I 75 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHS---KCLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRFGT----KCAACQLGI 75 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECT---TTSBCTTTCCBCCSCC-E--E-SSSCEECHHHHHHHHSC----BCTTTCCBC
T ss_pred CccccCCCccCCcEEEEECCcEEcc---ccCccCCCCCcCCCCC-c--c-cCCeeeecccccccccc----ccccccccc
Confidence 356666777665544332 2332 3588999999998764 3 2 57999999999988743 799999999
Q ss_pred CCCCee
Q psy3664 151 QRKNII 156 (504)
Q Consensus 151 ~~~DiI 156 (504)
...+++
T Consensus 76 ~~~~~v 81 (169)
T 2rgt_A 76 PPTQVV 81 (169)
T ss_dssp CTTSEE
T ss_pred CCCcEE
Confidence 877755
No 210
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=52.71 E-value=42 Score=28.03 Aligned_cols=86 Identities=9% Similarity=0.082 Sum_probs=58.4
Q ss_pred ccccCCCCCCCC-ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCC-ceeE---eeeeCCCCceeeccceeeecCce
Q psy3664 40 DHCCVSLQPYEH-PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKS-LIKL---NFHKNAKGEYHCPVLYKVFSKHS 114 (504)
Q Consensus 40 ~~C~Lsl~pl~~-Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kd-Li~l---~f~~n~~~~~~CPvt~k~f~~~t 114 (504)
..|..|..+|.. +....+|.+||+.+...- -..+|+..++++...+ ++.. .|+.. ..-|.|-.+.+.|.+.
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~~a~~~~~H~~-~~CF~C~~C~~~l~~~- 106 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPEVQRVTYNNFSWHAS-TECFLCSCCSKCLIGQ- 106 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTTSCEEEETTEEEESS-TTTSBCTTTCCBCTTS-
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcCceEEECCCCEeeCC-CCCcCcCCCCCccCCC-
Confidence 348889999986 577889999999887542 2357888899888644 2332 34411 2357899999999843
Q ss_pred eEEEEccccceecHHHH
Q psy3664 115 HLVAIETTGNVYSFEAV 131 (504)
Q Consensus 115 ~~v~i~~~G~V~s~~av 131 (504)
.++. .-|.+|+....
T Consensus 107 ~f~~--~~~~~yC~~~~ 121 (126)
T 2xqn_T 107 KFMP--VEGMVFCSVEC 121 (126)
T ss_dssp EEEE--ETTEEESSHHH
T ss_pred eeEe--ECCEEcchHHh
Confidence 3432 35888887433
No 211
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=50.74 E-value=9.4 Score=36.65 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=42.7
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCCeeEecCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDP 161 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~DiI~lqdp 161 (504)
.-..|.+|+...+.... =..|++.|-..|+...-......+||.|+.++.-. +..+.+|
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~-~~~~~~~ 237 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE-IPKVFDP 237 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC-CCCCCCC
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCCCCCC
Confidence 34569999888885311 12499999999999986444456899999998765 5555555
No 212
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.56 E-value=5 Score=26.95 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=11.5
Q ss_pred eeeccceeeecCc
Q psy3664 101 YHCPVLYKVFSKH 113 (504)
Q Consensus 101 ~~CPvt~k~f~~~ 113 (504)
|+||+|.+.|++.
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 9999999999863
No 213
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=50.51 E-value=5.9 Score=28.05 Aligned_cols=43 Identities=21% Similarity=0.438 Sum_probs=26.3
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
.|.|++|.+.|.....+. .=...-...+.+.|.+|++.|...+
T Consensus 2 ~~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~~~~ 44 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLK------------RHYRSHTNEKPYPCGLCNRAFTRRD 44 (60)
T ss_dssp CBCCTTTCCCBSCHHHHH------------HHHHTTTSSCSEECTTTCCEESSHH
T ss_pred cCcCCCCccccCCHHHHH------------HHHHHhCCCCCccCCCCCCccCCHH
Confidence 478999999987542211 0001111245688999999997543
No 214
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.01 E-value=5.8 Score=31.70 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=27.9
Q ss_pred CCceeeccceeeec-CceeEEEEccccceecHHHHHHHhhc-cCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFS-KHSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~-~~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~~~~f~~~D 154 (504)
...|.|++|.+.|. ....+. -|+ . .-.. .+.+.|.+|++.|....
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~-----~H~------~-~h~~~~~~~~C~~C~k~F~~~~ 68 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLK-----KHM------E-VCQKLQDALKCQHCRKQFKSKA 68 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHH-----HHH------H-HHHHHHHHHSCSSSCCCCSCHH
T ss_pred CCCcCCCCCCCChhhhHHHHH-----HHH------H-HHcCCCCCEECCCCCCccCCHH
Confidence 46799999999998 542211 000 0 0001 24578999999998643
No 215
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=48.63 E-value=5.9 Score=37.11 Aligned_cols=9 Identities=22% Similarity=-0.013 Sum_probs=8.0
Q ss_pred cccCCCCcC
Q psy3664 141 FKDLLTDEP 149 (504)
Q Consensus 141 ~~c~v~~~~ 149 (504)
|+||+|+.+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 899999975
No 216
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.31 E-value=9.9 Score=28.48 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=28.6
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|.+.|.....+. -| ..+-.-....+.+.|.+|++.|...+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~-----~H----~~~h~~~~~~~~~~C~~C~k~f~~~~ 52 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLN-----WH----QRKHAETVAALRFPCEFCGKRFEKPD 52 (78)
T ss_dssp CCCEECSSSCCEESSHHHHH-----HH----HHHHHHHTTTCCEECTTTCCEESSHH
T ss_pred CcCeECCCCCCeeCCHHHHH-----HH----HHHhhccCCCcccCCCCCCchhCCHH
Confidence 44699999999998642211 00 00000000246789999999997643
No 217
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=47.55 E-value=16 Score=27.25 Aligned_cols=50 Identities=4% Similarity=0.014 Sum_probs=36.3
Q ss_pred CCceeeccceeeecCceeEEEEccccc-----eecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGN-----VYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~-----V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
++.-.|.||.-+-.+. .+.||.+ .|-..+|.+-....++..|++|..+|.
T Consensus 4 ~~~~~CrIC~~~~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456799998774432 3688765 888889988654445678999999885
No 218
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=45.12 E-value=26 Score=28.40 Aligned_cols=17 Identities=6% Similarity=0.280 Sum_probs=12.8
Q ss_pred cCCcccCC--CCcCCCCCC
Q psy3664 138 TKSFKDLL--TDEPFQRKN 154 (504)
Q Consensus 138 ~k~~~c~v--~~~~f~~~D 154 (504)
.+.+.|++ |++.|....
T Consensus 90 ~~~~~C~~~~C~~~f~~~~ 108 (124)
T 1ubd_C 90 DRPYVCPFDGCNKKFAQST 108 (124)
T ss_dssp CCCCCCCSTTCCCCCSSTT
T ss_pred CCceECCCCCCCCccCCHH
Confidence 46789965 999998653
No 219
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=45.10 E-value=5.2 Score=31.17 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=25.8
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
.|.|++|.+.|.....+. .=+ ..-...+.++|.+|++.|...
T Consensus 36 ~~~C~~C~~~f~~~~~l~-----------~H~-~~h~~~~~~~C~~C~~~f~~~ 77 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLN-----------KHL-RIHSDERPFKCQICPYASRNS 77 (96)
T ss_dssp SEECSSSCCEESSHHHHH-----------HHH-HHSCCCCCEECSSSSCEESSH
T ss_pred CEeCCCCCCccCCHHHHH-----------HHH-HHhCCCCCccCCCCCCccCCH
Confidence 588999998887532110 000 111234568999999988754
No 220
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=44.80 E-value=14 Score=28.50 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=10.4
Q ss_pred CCceeeccceeeecC
Q psy3664 98 KGEYHCPVLYKVFSK 112 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~ 112 (504)
+..|.|++|.+.|..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (95)
T 2yt9_A 5 SSGVACEICGKIFRD 19 (95)
T ss_dssp CSCEECSSSCCEESS
T ss_pred CCCeECCCCCCccCC
Confidence 345777777777765
No 221
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=44.24 E-value=12 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCc
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDE 148 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~ 148 (504)
...|.|++|.+.|.....+.. =...-...+.+.|.+|++
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~------------H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNR------------HKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHH------------HGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHH------------HHHhcCCCCCccCCCCCC
Confidence 346999999999986422110 000111245688999975
No 222
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.30 E-value=13 Score=31.33 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=38.8
Q ss_pred cccCCCCCCC---CceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCce
Q psy3664 41 HCCVSLQPYE---HPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLI 89 (504)
Q Consensus 41 ~C~Lsl~pl~---~Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi 89 (504)
.|..|..||. ......+|.+||+.+....+...+.|-..++++...+++
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 4999999996 357788999999999888776666788888877766554
No 223
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=43.29 E-value=17 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=26.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
...|.|++|.+.|.....+. .=...-...+.+.|.+|++.|...
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~~~ 58 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLL------------IHERTHTDERPYTCDICHKAFRRQ 58 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHH------------HHHHHHCCSCCCBCSSSCCBCSCH
T ss_pred CcCeECCCCCCccCCHHHHH------------HHHHHcCCCCCcCCCCccchhCCH
Confidence 45689999999987532111 000111224567888888888653
No 224
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=42.51 E-value=20 Score=34.38 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=37.7
Q ss_pred CccccCCCCCCCCceecC-CCcEEeHHHHHHHHHhcC--CCCCCCCcCC
Q psy3664 39 FDHCCVSLQPYEHPYCDK-DGNIFELEALMGYLKQYK--HNPVTGKPLD 84 (504)
Q Consensus 39 f~~C~Lsl~pl~~Pv~~~-~G~lf~k~~Il~~L~~~~--~~Pvtg~~l~ 84 (504)
...|.+|...+..=+-|+ +|+.|-..|+-.|++.++ .||.++.+-.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 667999999988555444 799999999999998765 8998887644
No 225
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=42.05 E-value=30 Score=31.18 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=51.1
Q ss_pred CCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 74 KHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 74 ~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
..|...++++....++.. .|+. .-|.|..|.+.|.+.. + . .-|.+|+..++.++... +|..|++++
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~---~CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f~~----kC~~C~~~I 129 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHS---KCLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRFGT----KCAACQLGI 129 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECS---STTSCTTTCCCCSSCC-E--E-ETTEEECHHHHHHTTSC----CCTTTCCCC
T ss_pred CcCccCCCCccCceeEEecCCeEcc---ccCccCCCCCccCCCc-e--e-ECCEeeecCcccccccc----ccccCCCcc
Confidence 456667777765544332 2333 3578999999998764 3 2 47999999999887643 799999998
Q ss_pred CCCCee
Q psy3664 151 QRKNII 156 (504)
Q Consensus 151 ~~~DiI 156 (504)
...+++
T Consensus 130 ~~~~~v 135 (182)
T 2jtn_A 130 PPTQVV 135 (182)
T ss_dssp CSSCCC
T ss_pred CCCceE
Confidence 876644
No 226
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.99 E-value=9 Score=28.70 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHh--hccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLN--IKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~--~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|.+.|.....+. .-+. ...+.+.|.+|++.|...+
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~--------------~H~~~h~~~~~~~C~~C~~~f~~~~ 60 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLS--------------KHRRTHTGEKPYKCDECGKAFIQRS 60 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHH--------------HHHTTTCCSCSEECSSSCCEESSHH
T ss_pred CCCEECCCCCcccCCHHHHH--------------HHHHHcCCCcCeeCCCCCCccCCHH
Confidence 45699999999997542111 1111 1245689999999997643
No 227
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.74 E-value=7.9 Score=29.03 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc-cCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK-TKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~-~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|.+.|.....+. .=+...-.. .+.++|++|++.|...+
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~-----------~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMK-----------MHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp CCSEECTTTCCEESCHHHHH-----------HHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCCeECCCcCchhCCHHHHH-----------HHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 45699999999998642111 011111111 25789999999997643
No 228
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=41.56 E-value=15 Score=28.23 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=27.0
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
.|.|++|.+.|.....+. .=...-...+.+.|.+|++.|...
T Consensus 3 ~~~C~~C~k~f~~~~~L~------------~H~~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT------------THIRTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp CEECTTTCCEESCHHHHH------------HHHHHHHCCCCEECTTTCCEESSH
T ss_pred CCcCCCCCCccCCHHHHH------------HHHHHcCCCCCccCCCCCCccCCH
Confidence 589999999998642211 001112234678999999988754
No 229
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.32 E-value=33 Score=27.43 Aligned_cols=74 Identities=8% Similarity=0.109 Sum_probs=49.0
Q ss_pred CCCCCCCCcCCC-CCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 74 KHNPVTGKPLDV-KSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 74 ~~~Pvtg~~l~~-kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
..|+..++++.. ..++.. .|+. .=|.|-.+.+.|.+. .++ ..-|.+|+..+..++..+ +|..|+++
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~---~CF~C~~C~~~L~~~-~~~--~~~g~~yC~~cy~~~~~~----~C~~C~~~ 75 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHD---TCFRCAKCLHPLANE-TFV--AKDNKILCNKCTTREDSP----KCKGCFKA 75 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEET---TTCCCSSSCCCTTSS-CCE--EETTEEECHHHHTTCCCC----BCSSSCCB
T ss_pred CcCcccCCcccCCceEEEECccChhh---cCCcccccCCCCCcC-eeE--CcCCEEEChhHhhhhcCC----ccccCCCc
Confidence 346666777654 344433 2333 257899999999643 332 346999999999876533 79999999
Q ss_pred CCCCC-eeE
Q psy3664 150 FQRKN-IIT 157 (504)
Q Consensus 150 f~~~D-iI~ 157 (504)
+...| +|.
T Consensus 76 I~~~~~~~~ 84 (101)
T 2cup_A 76 IVAGDQNVE 84 (101)
T ss_dssp CCSSSCEEE
T ss_pred cccCCeEEE
Confidence 98654 444
No 230
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=38.98 E-value=18 Score=26.83 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=26.0
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
.|.|++|.+.|.....+. .=+ ..-...+.+.|.+|++.|...
T Consensus 29 ~~~C~~C~~~f~~~~~l~-----------~H~-~~h~~~~~~~C~~C~~~f~~~ 70 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMK-----------KHT-FIHTGEKPHKCQVCGKAFSQS 70 (82)
T ss_dssp CEECSSSCCEESSHHHHH-----------HHH-HHHHTCCCEECTTTSCEESSH
T ss_pred CeeCCcCChhhCCHHHHH-----------HHH-HHhcCCCCCcCCCcchhhCCh
Confidence 588999999887532211 000 111234668999999988653
No 231
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.15 E-value=22 Score=28.63 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=11.0
Q ss_pred CCceeeccceeeecC
Q psy3664 98 KGEYHCPVLYKVFSK 112 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~ 112 (504)
...|.|++|.+.|..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (124)
T 2dlq_A 5 SSGVECPTCHKKFLS 19 (124)
T ss_dssp CSSCCCTTTCCCCSS
T ss_pred CCCCCCCCCCCcCCC
Confidence 345788888888865
No 232
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=36.75 E-value=21 Score=27.09 Aligned_cols=42 Identities=21% Similarity=0.470 Sum_probs=26.3
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
.|.|++|.+.|.....+. .=+ ..-...+.+.|.+|+..|...
T Consensus 34 ~~~C~~C~~~f~~~~~l~-----------~H~-~~h~~~~~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLT-----------THI-RTHTGEKPFACDICGRKFARS 75 (90)
T ss_dssp CEECTTTCCEESCHHHHH-----------HHH-HHHHCCCCEECTTTCCEESSH
T ss_pred CccCCCCCcccCCHHHHH-----------HHH-HHcCCCCCccCCCCCchhCCH
Confidence 589999999887532111 000 111234668999999988754
No 233
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=35.82 E-value=7 Score=29.03 Aligned_cols=12 Identities=0% Similarity=-0.310 Sum_probs=10.2
Q ss_pred cCCcccCCCCcC
Q psy3664 138 TKSFKDLLTDEP 149 (504)
Q Consensus 138 ~k~~~c~v~~~~ 149 (504)
+..|+||+|+.+
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 578999999975
No 234
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=35.46 E-value=28 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHH-HhhccCCcccCCCCcCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQ-LNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~-l~~~~k~~~c~v~~~~f~~~ 153 (504)
+..|.|++|++.|..... +.. +..-.+.+.|.+|++.|...
T Consensus 72 ~~~~~C~~C~k~f~~~~~---------------l~~H~~~H~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 72 ISQFVCPLCLMPFSSSVS---------------LKQHIRYTEHTKVCPVCKKEFTST 113 (129)
T ss_dssp HCSEECTTTCCEESSHHH---------------HHHHHHHTCCCCBCTTTCCBCSSH
T ss_pred CCCeECCCCCcccCCHhH---------------HHHHHHHCCCCCCCCCCCcccCCH
Confidence 346999999999985421 111 11114568999999999754
No 235
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.93 E-value=7 Score=31.45 Aligned_cols=19 Identities=0% Similarity=-0.003 Sum_probs=13.5
Q ss_pred cCCcccCCCCcCCCCCCeeEe
Q psy3664 138 TKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 138 ~k~~~c~v~~~~f~~~DiI~l 158 (504)
+..|+||+|+.+ +++.+.+
T Consensus 58 PddW~CPvCga~--K~~F~~i 76 (81)
T 2kn9_A 58 PDDWSCPDCGAA--KSDFEMV 76 (81)
T ss_dssp CTTCCCTTTCCC--GGGEEEE
T ss_pred CCCCcCCCCCCC--HHHcEEc
Confidence 578999999974 4444444
No 236
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=32.57 E-value=7.1 Score=31.83 Aligned_cols=19 Identities=0% Similarity=-0.010 Sum_probs=13.3
Q ss_pred cCCcccCCCCcCCCCCCeeEe
Q psy3664 138 TKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 138 ~k~~~c~v~~~~f~~~DiI~l 158 (504)
+..|+||+|+.+ +++.+.+
T Consensus 66 PddW~CPvCga~--K~~F~~i 84 (87)
T 1s24_A 66 PDDWCCPDCGAT--KEDYVLY 84 (87)
T ss_dssp CTTCCCSSSCCC--GGGEEEC
T ss_pred CCCCCCCCCCCC--HHHhhhc
Confidence 578999999974 4444443
No 237
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.17 E-value=8.6 Score=29.99 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=14.2
Q ss_pred cCCcccCCCCcCCCCCCeeEe
Q psy3664 138 TKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 138 ~k~~~c~v~~~~f~~~DiI~l 158 (504)
+..|+||+|+.+ +++.+.+
T Consensus 38 Pddw~CP~Cga~--K~~F~~~ 56 (70)
T 1dx8_A 38 SDSFMCPACRSP--KNQFKSI 56 (70)
T ss_dssp CTTCBCTTTCCB--GGGEEEC
T ss_pred CCCCcCCCCCCC--HHHceEc
Confidence 578999999985 4555554
No 238
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.48 E-value=36 Score=22.24 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=12.4
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|.+.|...
T Consensus 8 ~k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRK 23 (45)
T ss_dssp CCSSEETTTTEECSCH
T ss_pred CCCCcCCCCCcccCCH
Confidence 3468999999998753
No 239
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.94 E-value=33 Score=25.25 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=24.7
Q ss_pred ceeecc--ceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCC
Q psy3664 100 EYHCPV--LYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQ 151 (504)
Q Consensus 100 ~~~CPv--t~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~ 151 (504)
.|.|++ |.+.|.....+. .=...-...+.+.|.+|++.|.
T Consensus 38 ~~~C~~~~C~k~f~~~~~L~------------~H~~~H~~~~~~~C~~C~k~F~ 79 (79)
T 2dlk_A 38 SFSCPEPACGKSFNFKKHLK------------EHMKLHSDTRDYICEFSGPSSG 79 (79)
T ss_dssp CEECSCTTTCCEESSHHHHH------------HHHHHHHTSCCCSCCSSSCCCC
T ss_pred CeECCCCCCcCccCCHHHHH------------HHHHHhCCCCCeeCCCCCCCCC
Confidence 488988 988887542211 0001122346789999999873
No 240
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.56 E-value=87 Score=26.11 Aligned_cols=73 Identities=10% Similarity=-0.005 Sum_probs=48.5
Q ss_pred CCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecC-ceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 75 HNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSK-HSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~-~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
.|...++++.-..++.. .|+. .-|.|..|.+.|.. ...++ ..-|.+|+..+..++... ..+|..|++++
T Consensus 4 ~C~~C~~~I~~~~~~~a~~~~wH~---~CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~~y~~~~~~--~~~C~~C~~~I 76 (131)
T 2xjy_A 4 TCGGCQQNIGDRYFLKAIDQYWHE---DCLSCDLCGCRLGEVGRRLY--YKLGRKLCRRDYLRLFGQ--DGLCASCDKRI 76 (131)
T ss_dssp BBTTTCCBCCSSEEEEETTEEEET---TTCBCTTTCCBCSSTTCCEE--EETTEEECHHHHHHHHCC--CEECTTTCCEE
T ss_pred cCcCCCCEeCCcEEEEECCCcccH---HHcccCcCCCccccCCCeEE--EECCEEeecCchhhhCCC--ccChhhcCCcc
Confidence 45556666664433332 2332 35889999999974 23343 357999999999988632 22699999998
Q ss_pred CCCC
Q psy3664 151 QRKN 154 (504)
Q Consensus 151 ~~~D 154 (504)
...+
T Consensus 77 ~~~e 80 (131)
T 2xjy_A 77 RAYE 80 (131)
T ss_dssp CTTS
T ss_pred Cccc
Confidence 7655
No 241
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.48 E-value=19 Score=28.67 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=25.7
Q ss_pred ceeeccceeeecCceeEEEEccccceecHHHHHHHh--hccCCcccCCCCcCCCCC
Q psy3664 100 EYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLN--IKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 100 ~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~--~~~k~~~c~v~~~~f~~~ 153 (504)
.|.|++|.+.|.....+. .-+. ...+.++|.+|++.|...
T Consensus 37 ~~~C~~C~~~f~~~~~l~--------------~H~~~h~~~~~~~C~~C~~~f~~~ 78 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLV--------------GHMKIHTGIKPYECNICAKRFMWR 78 (110)
T ss_dssp SEECTTTSCEESSSHHHH--------------HHHTTTCCCCCEECSSSCCEESCH
T ss_pred CccCCCCCcccCCHHHHH--------------HHHHHcCCCCCeeCCCCcchhcCH
Confidence 489999999987642211 1111 124568899999888654
No 242
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.48 E-value=32 Score=25.71 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=27.1
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhc---cCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIK---TKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~---~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|.+.|.....+. .=+...... .+.++|.+|++.|...+
T Consensus 13 ~k~~~C~~C~~~f~~~~~l~-----------~H~~~~~~~~~~~~~~~C~~C~~~f~~~~ 61 (86)
T 1x6h_A 13 EKPYACSHCDKTFRQKQLLD-----------MHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61 (86)
T ss_dssp CCCEECSSSSCEESSHHHHH-----------HHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred CCCCcCCCCCCccCCHHHHH-----------HHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence 34699999999997532110 001111111 15689999999887543
No 243
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.01 E-value=29 Score=27.56 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=26.9
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.|++|.+.|.....+. .-+..-.+.+.|.+|++.|...+
T Consensus 14 ~~~~~C~~C~~~f~~~~~l~--------------~H~~~H~~~~~C~~C~~~f~~~~ 56 (107)
T 1wjp_A 14 KEVYQCRLCNAKLSSLLEQG--------------SHERLCRNAAVCPYCSLRFFSPE 56 (107)
T ss_dssp CCCCBCTTTCCBCSSHHHHH--------------HHHHHHHHSBCCTTTCCCBSSHH
T ss_pred CcCeECCCCCCccCCHHHHH--------------HHHHHCCCCccCCCCCCccCCHH
Confidence 44699999999998642211 00111124578999999887543
No 244
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=28.53 E-value=48 Score=23.26 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=23.0
Q ss_pred CCCCCc----eecCCCcEEeHHHHHHHHHhcCC
Q psy3664 47 QPYEHP----YCDKDGNIFELEALMGYLKQYKH 75 (504)
Q Consensus 47 ~pl~~P----v~~~~G~lf~k~~Il~~L~~~~~ 75 (504)
.|++.| ||..+|.---.++|+.+|..|-.
T Consensus 9 ~ple~~~~YRvC~~CgkPi~lsAIvdHLenhC~ 41 (44)
T 2lo3_A 9 DPLDKPIQYRVCEKCGKPLALTAIVDHLENHCA 41 (44)
T ss_dssp CCCCCCCCEEECTTTCCEEETTTHHHHHHHCCT
T ss_pred cccCccccchhhcccCCcchHHHHHHHHHHHhc
Confidence 355544 78888999999999999998743
No 245
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.24 E-value=15 Score=33.89 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=9.6
Q ss_pred Cceeeccceeeec
Q psy3664 99 GEYHCPVLYKVFS 111 (504)
Q Consensus 99 ~~~~CPvt~k~f~ 111 (504)
..|+|++|+-++.
T Consensus 154 ~~~~C~~CG~~~~ 166 (191)
T 1lko_A 154 TKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEETTTCCEEE
T ss_pred ceEEECCCCCEee
Confidence 3699999976654
No 246
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.17 E-value=26 Score=27.00 Aligned_cols=70 Identities=10% Similarity=0.236 Sum_probs=46.5
Q ss_pred CCcEEeHHHHHHHHHhcCCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHH
Q psy3664 57 DGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQ 133 (504)
Q Consensus 57 ~G~lf~k~~Il~~L~~~~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~ 133 (504)
+|.+||.++.. +....|+..++++.-. ++.. .|+. .-|.|..+.+.|.+. .+ ++..-|.+|+..+..+
T Consensus 2 ~g~~yC~~~y~---~~~~~C~~C~~~I~~~-~~~a~~~~~H~---~CF~C~~C~~~L~~~-~f-~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 2 SSGSSGEGCYV---ATLEKCATCSQPILDR-ILRAMGKAYHP---GCFTCVVCHRGLDGI-PF-TVDATSQIHCIEDFHR 72 (81)
T ss_dssp CCCCCCCCCCC---SSCCBCTTTCCBCCSC-CEEETTEEECT---TTCBCSSSCCBCTTS-CE-ECCTTCCCEEHHHHHH
T ss_pred cCCEECHHHhh---cCCCccccCCCeecce-eEEECCccccH---HhcCcccCCCccCCC-ee-EECCCCEEECHHHHHH
Confidence 46677777664 3456788888887733 3332 2332 258899999999854 33 3344689999999987
Q ss_pred Hh
Q psy3664 134 LN 135 (504)
Q Consensus 134 l~ 135 (504)
+-
T Consensus 73 ~f 74 (81)
T 2dlo_A 73 KF 74 (81)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 247
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.18 E-value=34 Score=19.27 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=10.4
Q ss_pred CcccCCCCcCCCCC
Q psy3664 140 SFKDLLTDEPFQRK 153 (504)
Q Consensus 140 ~~~c~v~~~~f~~~ 153 (504)
.+.|..|++.|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 46788888888654
No 248
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=25.50 E-value=35 Score=28.87 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=11.9
Q ss_pred cCCcccCC--CCcCCCCC
Q psy3664 138 TKSFKDLL--TDEPFQRK 153 (504)
Q Consensus 138 ~k~~~c~v--~~~~f~~~ 153 (504)
.+.+.|.+ |++.|...
T Consensus 118 ~~~~~C~~~~C~k~f~~~ 135 (155)
T 2rpc_A 118 EKPFKCEFEGCDRRFANS 135 (155)
T ss_dssp SCSBCCSSTTCCCCBSSH
T ss_pred CCCccCCCCCCCCccCCH
Confidence 34678987 99888754
No 249
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.33 E-value=32 Score=21.18 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=11.9
Q ss_pred cCCcccCCCCcCCCCC
Q psy3664 138 TKSFKDLLTDEPFQRK 153 (504)
Q Consensus 138 ~k~~~c~v~~~~f~~~ 153 (504)
.+.++|.+|++.|...
T Consensus 9 ~k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSSBCCTTTCCCBSSH
T ss_pred CCCccCCCCCcccCcH
Confidence 3567888898888753
No 250
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.16 E-value=1.1e+02 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=9.1
Q ss_pred CCcccCCCCcCCCCC
Q psy3664 139 KSFKDLLTDEPFQRK 153 (504)
Q Consensus 139 k~~~c~v~~~~f~~~ 153 (504)
+.+.|.+|++.|...
T Consensus 79 ~~~~C~~C~k~f~~~ 93 (115)
T 2dmi_A 79 KVLKCMYCGHSFESL 93 (115)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred cceECCCCCCccCCH
Confidence 445666666666654
No 251
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.12 E-value=1.1e+02 Score=23.13 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=40.4
Q ss_pred cCCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCC
Q psy3664 73 YKHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTD 147 (504)
Q Consensus 73 ~~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~ 147 (504)
...|+..++++...+++.. .|+.+ -|.|..|.+.|.... ++ . .-|.+|+..+..++-.+ +|--|+
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~---CF~C~~C~~~L~~~~-~~-~-~~~~~yC~~cy~~~f~~----~c~gcg 74 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRC---CFLCMVCRKNLDSTT-VA-I-HDAEVYCKSCYGKKYGP----KGYGYG 74 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESS---SEECSSSCCEECSSC-CE-E-ETTEEECSHHHHHHCC-----------
T ss_pred CCcCcCcCccccCceeEEeCCcccccc---cCccCCCCCCCCCCC-eE-e-eCCEEECHHHHHHHhCC----cccccC
Confidence 4567788888866665544 24433 588999999998763 32 2 37999999999887633 455554
No 252
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.81 E-value=60 Score=21.11 Aligned_cols=16 Identities=31% Similarity=0.494 Sum_probs=12.8
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2en6_A 10 EKPYGCNECGKTFSQK 25 (46)
T ss_dssp SCCEEETTTTEEESSH
T ss_pred CcCeECCCCCcccCch
Confidence 3469999999999864
No 253
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.42 E-value=33 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=10.3
Q ss_pred CcccCCCCcCCCCC
Q psy3664 140 SFKDLLTDEPFQRK 153 (504)
Q Consensus 140 ~~~c~v~~~~f~~~ 153 (504)
.+.|.+|++.|...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 1ard_A 2 SFVCEVCTRAFARQ 15 (29)
T ss_dssp CCBCTTTCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 46788888888753
No 254
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.35 E-value=33 Score=25.29 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=13.1
Q ss_pred cCCcccCCCCcCCCCCCeeEe
Q psy3664 138 TKSFKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 138 ~k~~~c~v~~~~f~~~DiI~l 158 (504)
+..|+||+|+.+ +++.+.+
T Consensus 34 P~dw~CP~Cg~~--K~~F~~~ 52 (54)
T 4rxn_A 34 PDDWVCPLCGVG--KDEFEEV 52 (54)
T ss_dssp CTTCBCTTTCCB--GGGEEEC
T ss_pred CCCCcCcCCCCc--HHHceEc
Confidence 578999999975 4444433
No 255
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.28 E-value=1.3e+02 Score=27.03 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=37.2
Q ss_pred CCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhh
Q psy3664 75 HNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNI 136 (504)
Q Consensus 75 ~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~ 136 (504)
.|...++++...+++.. .|+. .-|.|-.|.+.|.+.. ++ ..-|.+|+..++.++..
T Consensus 9 ~C~~C~~~I~~~~~v~a~g~~wH~---~CF~C~~C~~~L~~~~-~~--~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 9 KCGVCQKAVYFAEEVQCEGSSFHK---SCFLCMVCKKNLDSTT-VA--VHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp ECTTTCCEECSSCCEEETTEEECT---TTCBCTTTCCBCCSSS-EE--EETTEEEEHHHHHHHHS
T ss_pred cCccCCCeecceeEEEeCCceecC---CCCcCcccCCcCCCCe-eE--ecCCEeeChhhhHhhcC
Confidence 46666776654444432 2232 3588999999998763 33 23799999999998864
No 256
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.12 E-value=59 Score=21.13 Aligned_cols=16 Identities=31% Similarity=0.604 Sum_probs=12.6
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQN 25 (46)
T ss_dssp SCSEECSSSCCEESSH
T ss_pred CCCEeCCcCCCccCCH
Confidence 3468999999999854
No 257
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.06 E-value=19 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=28.5
Q ss_pred CCceeeccceeeecCceeEEEEccccceecHHHHHHHh---hccCCcccCCCCcCCCCCC
Q psy3664 98 KGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLN---IKTKSFKDLLTDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~---~~~k~~~c~v~~~~f~~~D 154 (504)
+..|.|+.|++.|.....+. .=+...- ...+.+.|.+|++.|....
T Consensus 16 ekpy~C~~Cgk~F~~~~~L~-----------~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~ 64 (102)
T 2ghf_A 16 EGGYECKYCTFQTPDLNMFT-----------FHVDSEHPNVVLNSSYVCVECNFLTKRYD 64 (102)
T ss_dssp CSSEECSSCSCEESCHHHHH-----------HHHHHHCSSCCCSCCEEETTTTEEESSTH
T ss_pred CcCcCCCCCCCccCCHHHHH-----------HHHHhhCCCCCCCCCcCCCCCCcccCCHH
Confidence 34599999999998642211 0000011 1245689999999998654
No 258
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.29 E-value=62 Score=21.02 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=12.7
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2yso_A 10 EKSHQCRECGEIFFQY 25 (46)
T ss_dssp CCCEECTTTCCEESSH
T ss_pred CCCEEccccChhhCCH
Confidence 3469999999999864
No 259
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=22.86 E-value=27 Score=21.27 Aligned_cols=16 Identities=0% Similarity=0.115 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCCCcc
Q psy3664 364 AKVEEKVKADAFNAAH 379 (504)
Q Consensus 364 ~NF~~L~~~g~Y~g~~ 379 (504)
.||-.-.++|||||..
T Consensus 4 knfwsslrkgfydgea 19 (26)
T 2khf_A 4 KNFWSSLRKGFYDGEA 19 (26)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHhhcccchh
Confidence 6899999999999864
No 260
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.82 E-value=66 Score=20.89 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=12.8
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 10 ERPYICTVCGKAFTDR 25 (46)
T ss_dssp CCSEECTTTCCEESSH
T ss_pred CCCcCCCCCCchhCCH
Confidence 3469999999999864
No 261
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.44 E-value=18 Score=20.45 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=9.6
Q ss_pred eeeccceeeecCce
Q psy3664 101 YHCPVLYKVFSKHS 114 (504)
Q Consensus 101 ~~CPvt~k~f~~~t 114 (504)
|.|++|++.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 3 YVCERCGKRFVQSS 16 (26)
Confidence 66777777776543
No 262
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=22.38 E-value=54 Score=23.71 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCceeecc--ceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCC--CCcCCCCCC
Q psy3664 98 KGEYHCPV--LYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLL--TDEPFQRKN 154 (504)
Q Consensus 98 ~~~~~CPv--t~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v--~~~~f~~~D 154 (504)
...|.|++ |.+.|.....+. .=...-...+.++|.+ |++.|...+
T Consensus 15 ~~~~~C~~~~C~k~f~~~~~L~------------~H~~~H~~~~~~~C~~~~C~k~f~~~~ 63 (72)
T 2epa_A 15 IRSHICSHPGCGKTYFKSSHLK------------AHTRTHTGEKPFSCSWKGCERRFARSD 63 (72)
T ss_dssp CCCEECSSTTTCCEESSHHHHH------------HHHHHHSSSCSEECCCTTCCCEESSHH
T ss_pred cCceeCCCCCCccccCCHHHHH------------HHHHhcCCCCCccCCCCCCCcccCCHH
Confidence 45689988 888887532110 0011222356789975 999987643
No 263
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.29 E-value=66 Score=26.51 Aligned_cols=44 Identities=11% Similarity=-0.033 Sum_probs=32.2
Q ss_pred cccCCCCCCCC---ceecCCCcEEeHHHHHHHHHhcCCCCCCCCcCC
Q psy3664 41 HCCVSLQPYEH---PYCDKDGNIFELEALMGYLKQYKHNPVTGKPLD 84 (504)
Q Consensus 41 ~C~Lsl~pl~~---Pv~~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~ 84 (504)
.|..|..||.+ +....+|.+||+.+...-+.....+-.++..+.
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~~~ 78 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMV 78 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSCCC
T ss_pred cccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCceeE
Confidence 58899999974 677888999999998877766544434454433
No 264
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.15 E-value=1.3e+02 Score=24.91 Aligned_cols=79 Identities=9% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCCCCCcCCCCC-ceeE---eeeeCCCCceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCC
Q psy3664 75 HNPVTGKPLDVKS-LIKL---NFHKNAKGEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPF 150 (504)
Q Consensus 75 ~~Pvtg~~l~~kd-Li~l---~f~~n~~~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f 150 (504)
.|+.+++++...+ ++.. .|+. .-|.|-.|.+.|.....++ + .-|.+|+..+..++..+ +|-.+.-.-
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~---~CF~C~~C~~~L~~g~~f~-~-~~g~~yC~~cy~~~~~~----~~~~~~~~~ 80 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHL---ECFKCAACQKHFSVGDRYL-L-INSDIVCEQDIYEWTKI----NGGSGGSGG 80 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCT---TTCBCTTTCCBCCTTCEEE-E-CSSSEEEGGGHHHHHHH----HTCCCCCCS
T ss_pred cccCCCCeecCCceEEEECCccccc---ccCccccCCCCCCCCCcEE-e-eCCEEEcHHHhHHHhcc----ccCCCCCCC
Confidence 5777777776533 2222 2333 3588999999995444443 3 36999999999887644 455555554
Q ss_pred CCCCeeEecCCC
Q psy3664 151 QRKNIITLQDPN 162 (504)
Q Consensus 151 ~~~DiI~lqdp~ 162 (504)
...|...+..|.
T Consensus 81 ~~~~~~~~~~~~ 92 (123)
T 2l3k_A 81 SGGDVMVVGEPT 92 (123)
T ss_dssp CCSCCEECCCCC
T ss_pred ccCCCcccCCCc
Confidence 555666555553
No 265
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.07 E-value=73 Score=20.70 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=12.7
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 10 ERPYGCNECGKNFGRH 25 (46)
T ss_dssp CCCEECSSSCCEESSH
T ss_pred CCCEEccccCcccCCH
Confidence 3469999999999864
No 266
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.01 E-value=71 Score=20.70 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=12.5
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ytd_A 10 EKPYKCSECGKAFHRH 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CcCeECCCCCCeeCCh
Confidence 3468999999998864
No 267
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.88 E-value=34 Score=26.39 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=9.9
Q ss_pred ccCCCCcCCCCCCeeEe
Q psy3664 142 KDLLTDEPFQRKNIITL 158 (504)
Q Consensus 142 ~c~v~~~~f~~~DiI~l 158 (504)
.|+.|+..|-..|=|.+
T Consensus 28 iC~~cg~~YPI~dGIPv 44 (68)
T 2jr6_A 28 WSRQAKLAYPIKDGIPY 44 (68)
T ss_dssp EETTTTEEEEEETTEEC
T ss_pred EcCCCCcEecCCCCeee
Confidence 46666666665555543
No 268
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.73 E-value=35 Score=26.33 Aligned_cols=18 Identities=17% Similarity=-0.005 Sum_probs=10.1
Q ss_pred cccCCCCcCCCCCCeeEe
Q psy3664 141 FKDLLTDEPFQRKNIITL 158 (504)
Q Consensus 141 ~~c~v~~~~f~~~DiI~l 158 (504)
..|+.|+..|-..|=|.+
T Consensus 27 LiC~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 27 LICKGDRLAFPIKDGIPM 44 (68)
T ss_dssp EEETTTTEEEEEETTEEC
T ss_pred EEcCCCCcEecCCCCeee
Confidence 346666666665554543
No 269
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.57 E-value=44 Score=18.94 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=10.5
Q ss_pred CcccCCCCcCCCCC
Q psy3664 140 SFKDLLTDEPFQRK 153 (504)
Q Consensus 140 ~~~c~v~~~~f~~~ 153 (504)
.+.|.+|++.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1klr_A 2 TYQCQYCEFRSADS 15 (30)
T ss_dssp CCCCSSSSCCCSCS
T ss_pred CccCCCCCCccCCH
Confidence 46788888888754
No 270
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=68 Score=24.42 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=16.4
Q ss_pred eEeeeeCCCCceeeccceeeecCc
Q psy3664 90 KLNFHKNAKGEYHCPVLYKVFSKH 113 (504)
Q Consensus 90 ~l~f~~n~~~~~~CPvt~k~f~~~ 113 (504)
...+.......|.|++|.+.|...
T Consensus 15 ~c~~~~~~~~~~~C~~C~k~f~~~ 38 (95)
T 2ej4_A 15 SCKWIDEAQLSRPKKSCDRTFSTM 38 (95)
T ss_dssp CCCCCCSSCSSSSCCCCCCCCSSH
T ss_pred eeEeecCCcCCCcccccccccCCH
Confidence 344544445567899999999854
No 271
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=39 Score=24.28 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=26.0
Q ss_pred CceeeccceeeecCceeEEEEccccceecHHHHHHHhhccCCcccC-CCCcCCCCC
Q psy3664 99 GEYHCPVLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDL-LTDEPFQRK 153 (504)
Q Consensus 99 ~~~~CPvt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~-v~~~~f~~~ 153 (504)
..|.|+.|++.|. ...+. .=.. . ...+.++|. .|++.|...
T Consensus 9 ~~~~C~~C~k~f~-~~~L~-----------~H~~-~-~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 9 RTQPCTYCTKEFV-FDTIQ-----------SHQY-Q-CPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp CEEECSSSCCEEE-HHHHH-----------HHHH-H-CSSSEEECTTCCSCCEEET
T ss_pred CCeeccccCCccC-HHHHH-----------HHHH-H-cCCcCccCCcccCcccccH
Confidence 4588999988887 43211 0011 1 234668999 999998654
No 272
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.50 E-value=1.1e+02 Score=27.40 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=49.5
Q ss_pred CCCCCCCCcCCCCCceeE---eeeeCCCCceeeccceeeecC-ceeEEEEccccceecHHHHHHHhhccCCcccCCCCcC
Q psy3664 74 KHNPVTGKPLDVKSLIKL---NFHKNAKGEYHCPVLYKVFSK-HSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEP 149 (504)
Q Consensus 74 ~~~Pvtg~~l~~kdLi~l---~f~~n~~~~~~CPvt~k~f~~-~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~ 149 (504)
..|...++++.-..++.. .|+. .-|.|..|.+.|.. ...++ ..-|.+|+..++.++.... -+|..|+++
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~---~CF~C~~C~~~L~~~g~~~~--~~~g~~yC~~cy~~~~~~~--~~C~~C~~~ 78 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHS---RCLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNS--GACSACGQS 78 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECG---GGCBCTTTCCBHHHHCSEEE--EETTEEECHHHHHHHHSCC--EECTTTCCE
T ss_pred CcCccCCCEeCCceeEEecCcEecc---cCcccCCCCcccccCCceEE--EeCCccccccccccccccC--CccccCCCc
Confidence 356666776664443333 3333 35889999999985 23333 3469999999999886321 259999999
Q ss_pred CCCCC
Q psy3664 150 FQRKN 154 (504)
Q Consensus 150 f~~~D 154 (504)
+...+
T Consensus 79 I~~~e 83 (188)
T 1rut_X 79 IPASE 83 (188)
T ss_dssp ECTTS
T ss_pred cccCc
Confidence 88765
No 273
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.44 E-value=75 Score=20.52 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=12.6
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 10 ERPHKCNECGKSFIQS 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCeeCCCCChhhCCH
Confidence 3468999999999863
No 274
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.31 E-value=32 Score=19.48 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=8.5
Q ss_pred ceeeccceeeecC
Q psy3664 100 EYHCPVLYKVFSK 112 (504)
Q Consensus 100 ~~~CPvt~k~f~~ 112 (504)
.|.|++|.+.|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 4667777776654
No 275
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.09 E-value=72 Score=20.76 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.5
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 10 EKPYKCVECGKGYKRR 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCeECcccCchhCCH
Confidence 3468999999999853
No 276
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=73 Score=20.64 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=12.6
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 10 VKPYMCNECGKAFSVY 25 (46)
T ss_dssp CCSEECSSSCCEESCH
T ss_pred CcCeECCCCCchhCCH
Confidence 3469999999999864
No 277
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.05 E-value=76 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.5
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2emy_A 10 ENPYECHECGKAFSRK 25 (46)
T ss_dssp SCCEECSSSCCEESSH
T ss_pred CcCcCCCCCCcccCcH
Confidence 3468999999999854
No 278
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=20.70 E-value=74 Score=24.31 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=25.1
Q ss_pred ceeec--cceeeecCceeEEEEccccceecHHHHHHHhhccCCcccCCCCcCCCCC
Q psy3664 100 EYHCP--VLYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRK 153 (504)
Q Consensus 100 ~~~CP--vt~k~f~~~t~~v~i~~~G~V~s~~av~~l~~~~k~~~c~v~~~~f~~~ 153 (504)
.|.|+ +|.+.|.....+. .=+ ..-...+.+.|.+|++.|...
T Consensus 45 ~~~C~~~~C~~~f~~~~~l~-----------~H~-~~h~~~~~~~C~~C~~~f~~~ 88 (100)
T 2ebt_A 45 PYKCTWEGCDWRFARSDELT-----------RHY-RKHTGAKPFQCGVCNRSFSRS 88 (100)
T ss_dssp CEECCSSSCCCEESSHHHHH-----------HHH-HHHTSCCSCBCSSSCCBCSSH
T ss_pred CeeCCCCCCCCccCCHHHHH-----------HHH-HHhCCCCCeECCCCcCccCCH
Confidence 48897 5888876532110 001 112235678999999999753
No 279
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=20.57 E-value=67 Score=25.64 Aligned_cols=77 Identities=14% Similarity=0.024 Sum_probs=43.9
Q ss_pred cccCCCC-CCCCcee--cCCCcEEeHHHHHHHHHhcCCCCCCCCcCC--CCCceeEeeeeCCCCceeeccce-eeecCce
Q psy3664 41 HCCVSLQ-PYEHPYC--DKDGNIFELEALMGYLKQYKHNPVTGKPLD--VKSLIKLNFHKNAKGEYHCPVLY-KVFSKHS 114 (504)
Q Consensus 41 ~C~Lsl~-pl~~Pv~--~~~G~lf~k~~Il~~L~~~~~~Pvtg~~l~--~kdLi~l~f~~n~~~~~~CPvt~-k~f~~~t 114 (504)
.|++|.. ++.+||. ...|+.||..++..+-... -+...+.+. +.++ ......|+... ..+.
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~--~~~~~h~l~~~~~~~--------~~~~~~C~~H~~e~l~--- 71 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNK--KPFTGHRLIEPIPDS--------HIRGLMCLEHEDEKVN--- 71 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSC--SSSTTCCBSSCCCSC--------CSSCCCCSSCSSSCCC---
T ss_pred CCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccC--CccCCCeeecccccc--------CccCCcCcCcCCCcce---
Confidence 4999996 4778865 7889999999998732111 111222211 1111 11234577663 3333
Q ss_pred eEEEEccccceecHHHHH
Q psy3664 115 HLVAIETTGNVYSFEAVD 132 (504)
Q Consensus 115 ~~v~i~~~G~V~s~~av~ 132 (504)
++=..++..++..+..
T Consensus 72 --~fC~~~~~~iC~~C~~ 87 (101)
T 2jun_A 72 --MYCVTDDQLICALCKL 87 (101)
T ss_dssp --EEETTTTEEECHHHHH
T ss_pred --EECCCCCCccchhcCC
Confidence 3456677777777764
No 280
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.33 E-value=46 Score=20.17 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=10.9
Q ss_pred CCcccCCCCcCCCCC
Q psy3664 139 KSFKDLLTDEPFQRK 153 (504)
Q Consensus 139 k~~~c~v~~~~f~~~ 153 (504)
+.+.|.+|++.|...
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 457788888888653
No 281
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.22 E-value=47 Score=18.99 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=11.2
Q ss_pred CcccCCCCcCCCCCC
Q psy3664 140 SFKDLLTDEPFQRKN 154 (504)
Q Consensus 140 ~~~c~v~~~~f~~~D 154 (504)
.+.|..|++.|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 2 AYACGLCNRAFTRRD 16 (30)
T ss_dssp CSBCTTTCCBCSSSH
T ss_pred CcCCcccCcccCChH
Confidence 467889998887554
No 282
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.12 E-value=83 Score=20.11 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=12.4
Q ss_pred CCceeeccceeeecCc
Q psy3664 98 KGEYHCPVLYKVFSKH 113 (504)
Q Consensus 98 ~~~~~CPvt~k~f~~~ 113 (504)
+..|.|++|++.|...
T Consensus 8 ~k~~~C~~C~k~f~~~ 23 (44)
T 2emx_A 8 EKPFGCSCCEKAFSSK 23 (44)
T ss_dssp CCCEECSSSSCEESSH
T ss_pred CcCccCCCCCcccCCH
Confidence 3458999999988864
Done!