RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3664
(504 letters)
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 121 bits (305), Expect = 1e-32
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
P+ TG G+L+MAN+GP+TN SQFF+T LDGKHT+FG++ G+ ++ + VE
Sbjct: 87 HPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE 146
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 121 bits (306), Expect = 3e-32
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H G GVLSMAN G ++N S+FFIT++SC HL+ KHT+FG++VGG+D L EK+E
Sbjct: 94 DNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLE 153
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 119 bits (302), Expect = 3e-32
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H RGV+SMAN+GPNTN SQFFITY HLD K+TVFGK++ G++TL +EK+
Sbjct: 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP 135
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 120 bits (303), Expect = 6e-32
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
P+ TG G+L+MAN+GP+TN SQFF+T LDGKHT+FG++ G+ ++ + VE
Sbjct: 87 HPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE 146
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 119 bits (301), Expect = 1e-31
Identities = 42/60 (70%), Positives = 53/60 (88%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
+PN +HTGRG+LSMANSGPN+N SQFFIT+RSC +LD KHT+FG++VGG D L+A+E VE
Sbjct: 95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVE 154
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 118 bits (298), Expect = 2e-31
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H LSMAN+G NTN SQFFIT LD KHTVFG++ GM+ + I V+
Sbjct: 97 HSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVK 156
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 117 bits (296), Expect = 2e-31
Identities = 31/60 (51%), Positives = 37/60 (61%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
+ H+ ++SMAN GPNTN SQFFIT C LD KHTVFGK+ G + IEKV
Sbjct: 81 FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVR 140
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 118 bits (298), Expect = 3e-31
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
HTG G+LSM+N+GPNTN+SQFFIT HLDGKHT+F ++ M + I V+
Sbjct: 114 NKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQ 173
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 113 bits (284), Expect = 2e-29
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG-GMDTLSAIEKV 503
RG+++MAN+G + N SQFF T + L+ KHT+FGK+ G + + + +V
Sbjct: 100 HSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEV 159
Query: 504 E 504
+
Sbjct: 160 D 160
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 111 bits (280), Expect = 7e-29
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 445 KPNYTHTGRGVLSMANSG----PNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAI 500
P + RG+LSMA+ G PNTN SQFFITY S L+G++ +FGK++ G +TL+ +
Sbjct: 92 YPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTL 151
Query: 501 EKVE 504
E
Sbjct: 152 ENCP 155
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 109 bits (274), Expect = 4e-28
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 445 KPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG--GMDTLSAIEK 502
P +L+MAN+GP TN SQFFIT HL+ +HT+FG+++ + AI K
Sbjct: 111 HPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISK 170
Query: 503 VE 504
Sbjct: 171 TA 172
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 106 bits (268), Expect = 3e-27
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H+ G+LSMANSGP+TN QFFIT C+ LDGKH VFGK++ G+ + IE V
Sbjct: 104 HSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV 157
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 106 bits (268), Expect = 3e-27
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H +LSMAN G +TN SQFFIT + HLDG H VFG+++ G + + IE +
Sbjct: 106 HNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQK 160
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 106 bits (268), Expect = 3e-27
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H V+SMAN GPNTN SQFFIT HL+ H VFGK+V G + ++ IE ++
Sbjct: 103 HDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLK 157
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 105 bits (265), Expect = 6e-27
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G+LSMAN+GPNTN+SQFFIT C LDGKH VFGK++ GM+ + +EK
Sbjct: 98 HDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKE 151
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 105 bits (265), Expect = 7e-27
Identities = 32/54 (59%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
HTG GVLSMAN+GPNTN SQFF+ LDGKH VFG++V G+D + A+E
Sbjct: 99 HTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN 152
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 106 bits (266), Expect = 7e-27
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H +LSMAN G +TN SQFFIT + HLDG H VFG ++ G + + IE ++
Sbjct: 116 HDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLK 170
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 105 bits (265), Expect = 1e-26
Identities = 32/54 (59%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H +LSMAN+GPNTN SQFFIT C LDGKH VFGK++ GM+ + +IEK
Sbjct: 115 HDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKC 168
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 104 bits (261), Expect = 2e-26
Identities = 32/54 (59%), Positives = 37/54 (68%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G GVLSMAN+GPNTN SQFFI + LDGKH VFG ++ GMD + IE
Sbjct: 92 HVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESF 145
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 104 bits (262), Expect = 2e-26
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G GVLSMANSGPNTN SQFFI C+ LDGKH VFG++V G + + +E V
Sbjct: 99 HEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESV 152
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 104 bits (261), Expect = 2e-26
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
HTG G+LSMANSGPNTN SQFF+T + LDGKH VFG++ G+D L IE
Sbjct: 100 HTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ 153
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 103 bits (260), Expect = 3e-26
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
HT G+LSMAN+G NTN SQFFIT + LDGKH VFG+++ G+D + +E
Sbjct: 91 HTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGK 144
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 104 bits (261), Expect = 4e-26
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G G +SMAN+G +TN SQFFIT LDGKH VFGK++ GM+ + +E
Sbjct: 104 HYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVEST 157
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 103 bits (260), Expect = 5e-26
Identities = 32/54 (59%), Positives = 39/54 (72%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
HTG G+LSMAN+GPNTN SQFFI LDGKH VFGK+ GM+ + A+E+
Sbjct: 111 HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERF 164
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 103 bits (259), Expect = 7e-26
Identities = 30/54 (55%), Positives = 35/54 (64%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
HT G+LSMAN G +TN SQFFIT LD KH VFG++V GMD + I K
Sbjct: 116 HTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKY 169
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 99 bits (250), Expect = 6e-25
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMV--GGMDTLSAIEKV 503
H +G+LSMAN+GPNTN SQFFIT + LDGKH VFG++ + IE +
Sbjct: 96 HDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEAL 151
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 100 bits (251), Expect = 2e-24
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG--GMDTLSAIEKV 503
H G+LSMANSGPNTN QFFIT + C LDGK+ VFG+++ + L IE V
Sbjct: 153 HDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENV 208
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 100 bits (251), Expect = 2e-24
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 445 KPNYTHTGRGVLSMANSGPN--------------TNTSQFFITYRSCNHLDGKHTVFGKM 490
P RG++ +AN G + TN +QFFIT + L+ +T+FGK+
Sbjct: 99 HPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
Query: 491 VG-GMDTLSAIEKVE 504
G + L +E
Sbjct: 159 TGHTLYNLMKFNDLE 173
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 97.6 bits (244), Expect = 5e-24
Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKV 503
H G LSMAN+GPNTN SQFFIT LDG+H VFGK++ GMD + IEK
Sbjct: 100 HF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKT 152
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 100 bits (251), Expect = 3e-23
Identities = 31/55 (56%), Positives = 37/55 (67%)
Query: 450 HTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
H G+LSMAN+G NTN SQFFIT HLDGKH VFG+++ GM +E VE
Sbjct: 112 HDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE 166
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 96.7 bits (241), Expect = 4e-23
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 450 HTGRGVLSMA----NSGPNTNTSQFFITYRSCN------HLDGKHTVFGKMVGGMDTLSA 499
H +G+LS+ SG S F IT LD V G++ GG+D L
Sbjct: 123 HESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDK 182
Query: 500 IEKVE 504
I +
Sbjct: 183 INSMI 187
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 85.1 bits (210), Expect = 3e-18
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 442 KNTKPNYTHTGRGVLSMANSG--PNTNTSQFFITYRSC-------NHLDGKHTVFGKMVG 492
+ G ++MA ++ +SQ F + N LDG++ VFG +
Sbjct: 275 YKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTD 334
Query: 493 GMDTLSAIEK 502
D L+ ++
Sbjct: 335 NEDFLADLKV 344
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 76.8 bits (190), Expect = 8e-17
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 453 RGVLSMA-NSGPNTNTSQFFITYRSCNHLDGK--------HTVFGKMVGGMDTLSAIEKV 503
++MA + P++ T+QFFI L+ + VFGK+V G D + I+ V
Sbjct: 84 TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAV 143
Query: 504 E 504
+
Sbjct: 144 K 144
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 75.6 bits (187), Expect = 2e-16
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 453 RGVLSMA-NSGPNTNTSQFFITYRSCNHLDGK--------HTVFGKMVGGMDTLSAIEKV 503
RG L+MA P++ T+QFFI + L+ + VF ++V GMD + I+ V
Sbjct: 80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGV 139
Query: 504 E 504
Sbjct: 140 A 140
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 75.3 bits (186), Expect = 3e-16
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 453 RGVLSMA-NSGPNTNTSQFFITYRSCNHLDG-----KHTVFGKMVGGMDTLSAIEKVE 504
RG ++MA + ++ TSQFFI LD + VFGK+V GMD I +V
Sbjct: 85 RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 142
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 55.4 bits (134), Expect = 2e-10
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 42 CCVSLQPYEHPYCD-KDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92
C +S + P K IFE L Y+K ++P+T +PL ++ ++++
Sbjct: 6 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 65/498 (13%), Positives = 134/498 (26%), Gaps = 170/498 (34%)
Query: 30 EKSDFKRLPFDHCCVSLQPYEHPY------CDKDGNIFELEALMGYLKQ-YK--HNPVTG 80
KS + DH +S K + + + + L+ YK +P+
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKT 100
Query: 81 KPLDVKSLIKLNFHKNAKGEYHCPVLY---KVFSKHSHLVAIETTGNVYSFEAVDQLNIK 137
+ S++ + E LY +VF+K+ NV + +L
Sbjct: 101 EQRQ-PSMMTRMYI-----EQRDR-LYNDNQVFAKY----------NVSRLQPYLKLRQA 143
Query: 138 TKSFK--------------------DLLTDEPFQRK---NI--ITL---QDPNELSKFNL 169
+ D+ Q K I + L P + + L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-ML 202
Query: 170 TNFHHL--KN---------NLRVLTDEEKEQLKD-------PESRLKTVTNETRDILDTF 211
+ N N+++ + +L+ L +L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---------VLL-- 251
Query: 212 KREYKPTEAKVEEKVKADAFNAAHYSQEEKEQLKDPESRLKT-VTNETRDILDTFKREYK 270
V+ +AFN K +T TR
Sbjct: 252 ---------NVQNAKAWNAFNL----------------SCKILLT--TRF---------- 274
Query: 271 PTEAKVEEKVKADAFNAAHYSQGEVSASFTSTAMVPVTENICAVVEEDLVRYSRVVKKEE 330
+V + + A H S S + T +++ +Y ++
Sbjct: 275 ---KQVTDFLSAA--TTTHISLDHHSMTLTPDE----VKSLLL-------KYLDCRPQDL 318
Query: 331 KEQLKD--PESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQVWLVSS 388
++ P L + RD L T+ +K V D S + ++
Sbjct: 319 PREVLTTNPRR-LSIIAESIRDGLATWDN-WK--------HVNCDKLTTIIESSLNVLEP 368
Query: 389 RKLRDRIQKV-----DSKLSPMKHETFWTHSREN-----TNQLKPK--LKRRSKQT---- 432
+ R ++ + + + W ++ N+L ++++ K++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 433 HSMQPTILKKNTKPNYTH 450
S+ + K H
Sbjct: 429 PSIYLELKVKLENEYALH 446
Score = 32.5 bits (73), Expect = 0.37
Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 42/209 (20%)
Query: 30 EKSDFKRLP--FDHCCVSLQPYEHPYCDKDGNIFE---------LEALMGYLKQYKHNPV 78
+ + +L + L+P E+ ++F L + + + V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 79 TGKPLDVKSLIK--------------LNFHKNAKGEY--HCPVL--YKVFSKH--SHLVA 118
K L SL++ L + EY H ++ Y + L+
Sbjct: 408 VNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 119 IETTGNVYSF-----EAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNFH 173
YS + ++ + F+ + D F + I S L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 174 HLKNNLRVLTDEEKEQLKDPESRLKTVTN 202
LK + D + + E + + +
Sbjct: 526 QLKFYKPYICDNDPK----YERLVNAILD 550
Score = 30.6 bits (68), Expect = 1.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 46 LQPYEHPYCDKDGNIFE--LEALMGYLKQYKHNPVTGKPLDV 85
L+ Y+ CD D +E + A++ +L + + N + K D+
Sbjct: 527 LKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 62/321 (19%), Positives = 100/321 (31%), Gaps = 110/321 (34%)
Query: 106 LYKVFSKHSHLVAIETTGNVYSFEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELS 165
LYK A + + D T F + D I + +P L+
Sbjct: 1635 LYKTSK-----AAQDV------WNRADNHFKDTYGFS--ILD--------IVINNPVNLT 1673
Query: 166 -KFNLTNFHHLKNNLRVLTDEE-KEQLKDPESRLKTVTNETRDILDTF---KREYKPTE- 219
F ++ N + E + E K + + TF K T+
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQF 1731
Query: 220 -------------AKVEEK--VKADAFNAAH----YSQEEKEQLK------DPESRLKTV 254
++ K + ADA A H Y+ L ES ++ V
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-----LASLADVMSIESLVEVV 1786
Query: 255 TNETRDILDTFKR-EYKPTEAKVEEKVKADAFNAAHYS-----QGEVSASFTSTAMVPVT 308
F R ++ V D ++Y G V+ASF+ A+ V
Sbjct: 1787 ----------FYRGMT------MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 309 ENICA----VVEEDLVRYSRVVKKEEKEQ------LKDPESRLKTVTNETRDILDTFK-R 357
E + +VE +V Y E +Q L+ L TVTN +L+ K +
Sbjct: 1831 ERVGKRTGWLVE--IVNY-----NVENQQYVAAGDLRA----LDTVTN----VLNFIKLQ 1875
Query: 358 EYKPTEAKVE---EKVKADAF 375
+ E + E+V+ F
Sbjct: 1876 KIDIIELQKSLSLEEVEGHLF 1896
Score = 44.3 bits (104), Expect = 9e-05
Identities = 64/426 (15%), Positives = 134/426 (31%), Gaps = 136/426 (31%)
Query: 10 KLYLTYTEWTTLYGGKKAGPEKSDFKRLPFDHCCVSLQPYEHPYCDKDGNIFEL--EALM 67
+L ++GG+ G F+ L L Y+ Y G++ + E L
Sbjct: 155 QLV-------AIFGGQ--GNTDDYFEEL------RDL--YQT-YHVLVGDLIKFSAETLS 196
Query: 68 GYLKQ-YKHNPVTGKPLDVKSLIKLNFHKNAKGEY--HCPV------L-----YKVFSKH 113
++ V + L++ ++ N +Y P+ + Y V +K
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 114 SHLVAIETTGNVYS-FEAVDQLNIKTKSFKDLL---------TDEPFQR--KNIITL--- 158
T G + S + T + L+ + E F + IT+
Sbjct: 256 LGF----TPGELRSYLKGA------TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 159 -----QDPNELSKFNLTNFHHLKNNLRVLTDEEKEQLKDPESRLKTVTNETRDILDTFKR 213
+ + + +L D + P L +++N T++ + +
Sbjct: 306 IGVRCYE----------AYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQEQVQDYVN 354
Query: 214 E---YKPTEAKVEEKVK--ADAFNAAHYSQEEKEQLKDPESRLKTVTNETRDILDTFKRE 268
+ + P +VE + A + P+S L + R K
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGP----------PQS-LYGLNLTLRKA----KAP 399
Query: 269 YKPTEAKV---EEKVKADA-FNAAHYSQGEVSASFTSTAMVPVTENICAVVEEDLVRYSR 324
++++ E K+K F V++ F S +VP ++ I + ++ V ++
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVSFN- 451
Query: 325 VVKKEEKEQLKDPESRLKTV--TNETRDILDTFKREYKPTEAK------VEEKV---KAD 373
+ ++ P V T + D+ R + ++ + V
Sbjct: 452 ------AKDIQIP------VYDTFDGSDL-----RVLSGSISERIVDCIIRLPVKWETTT 494
Query: 374 AFNAAH 379
F A H
Sbjct: 495 QFKATH 500
Score = 35.0 bits (80), Expect = 0.064
Identities = 47/307 (15%), Positives = 93/307 (30%), Gaps = 117/307 (38%)
Query: 16 TEWTTLYGGKKAGPEKSDFKRLPFDHCCVSLQPYEHPYCDKDGN----IFELE------- 64
T +GG+K + ++ + F+ E + + + + F E
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 65 -----AL--MGY--LKQYKHNPVTGKPLDVK----SLIKLNFHKNAKGEYHCPVLYKVFS 111
AL M + K P D SL GEY
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSK--GLIPADATFAGHSL----------GEY---------- 1767
Query: 112 KHSHLVAIETTGNVYSFE-AVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLT 170
+ L ++ +V S E V +++ F R + + P +
Sbjct: 1768 --AALASL---ADVMSIESLV-----------EVV----FYRGMTMQVAVPRD------- 1800
Query: 171 NFHHLKNNLRVLTDEEKEQLKDPESRLKTVTNET-RDILDTFKREYKPTEAKVEEKVKAD 229
++N ++ +P + + E + +++ + T VE +
Sbjct: 1801 --ELGRSNYGMIA-------INPGRVAASFSQEALQYVVERVGKR---TGWLVE--I--- 1843
Query: 230 A-FNAAHYSQEEKEQ------LKDPESRLKTVTNETRDILDTFK-REYKPTEAKVE---E 278
+N + +Q L+ L TVTN +L+ K ++ E + E
Sbjct: 1844 VNYNVEN------QQYVAAGDLRA----LDTVTN----VLNFIKLQKIDIIELQKSLSLE 1889
Query: 279 KVKADAF 285
+V+ F
Sbjct: 1890 EVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 4e-04
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 21/49 (42%)
Query: 186 EKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAA 234
EK+ LK ++ LK Y A A A A
Sbjct: 18 EKQALKKLQASLKL---------------YADDSA------PALAIKAT 45
Score = 40.3 bits (93), Expect = 4e-04
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 21/49 (42%)
Query: 240 EKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAA 288
EK+ LK ++ LK Y A A A A
Sbjct: 18 EKQALKKLQASLKL---------------YADDSA------PALAIKAT 45
Score = 40.3 bits (93), Expect = 4e-04
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 21/49 (42%)
Query: 330 EKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAA 378
EK+ LK ++ LK Y A A A A
Sbjct: 18 EKQALKKLQASLKL---------------YADDSA------PALAIKAT 45
Score = 29.5 bits (65), Expect = 1.7
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 6/23 (26%)
Query: 30 EKSDFKRLPFDHCCVSLQPYEHP 52
EK K+L SL+ Y
Sbjct: 18 EKQALKKLQ-----ASLKLYA-D 34
Score = 28.4 bits (62), Expect = 3.6
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 62 ELEALMGYLKQYKHNPVTGKPLDVKSLIK 90
L+ L LK Y + L +K+ ++
Sbjct: 21 ALKKLQASLKLYA--DDSAPALAIKATME 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 34.7 bits (80), Expect = 0.010
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 25 KKAGPEKSDFKRLPFDHCC-VSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPL 83
K + D+ P + + P G I + ++ +L +P + L
Sbjct: 14 AKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73
Query: 84 DVKSLI 89
L
Sbjct: 74 TESMLE 79
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 36.5 bits (84), Expect = 0.019
Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 22/168 (13%)
Query: 175 LKNNLRVLTDEEKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAA 234
+ R L+ + D E RD L + + TE E
Sbjct: 3 CEIECRALSTAHTRLIHDF---------EPRDALTYLEGKNIFTEDHSEL---------I 44
Query: 235 HYSQEEKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQGE 294
E++ + + +E ++D F + A E A N +
Sbjct: 45 SKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPV 104
Query: 295 VSASFTSTAMVPVTENICAVVEEDLVRYSRVVKKEEKEQLKDPESRLK 342
V A S M+ + V ++ +++ +++ +
Sbjct: 105 VIAPQFSRQMLDRKLLLGNVPKQMTC----YIREYHVDRVIKKLDEMC 148
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 33.1 bits (76), Expect = 0.031
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 28 GPEKSDFKRLPFDHCC-VSLQPYEHPYCDKDGNIFELEALMGYLKQYKHNPVTGKPLDVK 86
G + D+ P + + P G + + ++ +L +P + L
Sbjct: 2 GSAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61
Query: 87 SLI 89
L
Sbjct: 62 MLE 64
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 30.2 bits (69), Expect = 0.25
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 42 CCVSLQPYEHPYCDKDGNIFELEALMGYLKQYKHN-PVTGKPLDVKSLI 89
C +SL+ + P G +E ++ +L P + + L L
Sbjct: 11 CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.27
Identities = 8/71 (11%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 185 EEKEQL--KDPESRLKT--VTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQEE 240
E++++L D S++ + + L+ + + K + + +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI----------AD 142
Query: 241 KEQLKDPESRL 251
K + P++ +
Sbjct: 143 KAFYQQPDADI 153
Score = 28.2 bits (62), Expect = 4.6
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 185 EEKEQLKD-PESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQEEKEQ 243
+E E ++ E + K + + D + E + + K + +N Q EK +
Sbjct: 82 QEPESIRKWREEQRKRL--QELDAASKVMEQ----EWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 244 LKDPESRLKTVTNETRDIL 262
+ + + DI+
Sbjct: 136 INNRIADKAFYQQPDADII 154
Score = 27.4 bits (60), Expect = 8.4
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 327 KKEEKEQL--KDPESRLKT--VTNETRDILDTFKREYKPTEAKVEE--KVKADAF 375
++E++++L D S++ + + L+ + + K + ++ AF
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 32.0 bits (72), Expect = 0.60
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 42 CCVSLQPYEHPY-CDKDGNIFELEALMGYLKQYKHNPVTGKPLDVKSLI 89
+ + P + + +L +P PL ++ +
Sbjct: 894 DPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVT 942
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 30.0 bits (67), Expect = 1.1
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 25 KKAGPEKSDFKRLPFDHCC-VSLQPYEHPYCDKDGNIFELEALMGYLKQYKHN-PVTGKP 82
EK + +P C +S + P G ++ + + +L++ H PVT P
Sbjct: 91 FSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSP 150
Query: 83 LDVKSLI 89
L LI
Sbjct: 151 LTQDQLI 157
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase;
2.50A {Escherichia coli} SCOP: c.55.3.6
Length = 158
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 191 KDPESRLKTVTNETRDILDTFKREYKPTEAKVEE 224
D SRLK + +I+ +++P +E+
Sbjct: 38 DDLPSRLKLIYAGVTEIIT----QFQPDYFAIEQ 67
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 245 KDPESRLKTVTNETRDILDTFKREYKPTEAKVEE 278
D SRLK + +I+ +++P +E+
Sbjct: 38 DDLPSRLKLIYAGVTEIIT----QFQPDYFAIEQ 67
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 335 KDPESRLKTVTNETRDILDTFKREYKPTEAKVEE 368
D SRLK + +I+ +++P +E+
Sbjct: 38 DDLPSRLKLIYAGVTEIIT----QFQPDYFAIEQ 67
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme,
KIAA0126, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.2
Length = 98
Score = 28.2 bits (63), Expect = 1.7
Identities = 6/62 (9%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 30 EKSDFKRLPFDHCC-VSLQPYEHPYCDKDGN-IFELEALMGYLKQYKHNPVTGKPLDVKS 87
E+ + + + P + + +L + +P PL +
Sbjct: 12 EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71
Query: 88 LI 89
+
Sbjct: 72 IR 73
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 30.1 bits (66), Expect = 2.0
Identities = 28/254 (11%), Positives = 64/254 (25%), Gaps = 12/254 (4%)
Query: 128 FEAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNFHHLKNNLRVLTDE-- 185
FE ++ L I ++ KF N +K ++ ++
Sbjct: 604 FEKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDN-QPIKKEENIVNEDGP 662
Query: 186 ---EKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQEEKE 242
+ + L + + K E+ + + QE+ +
Sbjct: 663 NTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLK 722
Query: 243 QLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADAFNAAHYSQGEVSA----- 297
+ + K T + + + +EEKV G+ S
Sbjct: 723 SMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQ 782
Query: 298 -SFTSTAMVPVTENICAVVEEDLVRYSRVVKKEEKEQLKDPESRLKTVTNETRDILDTFK 356
T V + + V ++ + + S E + D +
Sbjct: 783 LYMTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQE 842
Query: 357 REYKPTEAKVEEKV 370
+ +E +
Sbjct: 843 FMLDKSIDSIEGII 856
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 28.6 bits (64), Expect = 3.6
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 465 TNTSQFFITYRSCNHLDGKHTVFGKMVGGM 494
T+ + DG +F K+
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTT 41
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle,
greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP:
a.77.1.3
Length = 89
Score = 27.1 bits (60), Expect = 4.6
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 180 RVLTDEEKEQLKDPESRLKTVTNETRDILDTFKR 213
V++ E+ +++D TV ++ R ++D
Sbjct: 32 EVISQEDMNKVRDEN---DTVMDKARVLIDLVTG 62
>2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_B*
Length = 193
Score = 28.0 bits (63), Expect = 5.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 419 NQLKPKLKRRSKQTHSMQPTILKKNTKP 446
N+++P KR SM PTIL K+ KP
Sbjct: 52 NEVQPN-KRP---LSSMTPTILFKDDKP 75
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, T thermophilus; 2.00A {Thermus
thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A*
2pc9_A*
Length = 529
Score = 28.5 bits (64), Expect = 5.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 447 NYTHTGRGVLSM---ANSGPNTNTSQFF 471
NY RGV M AN G + + FF
Sbjct: 204 NYLMPKRGVFPMHASANVGKEGDVAVFF 231
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase;
2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Length = 524
Score = 28.5 bits (64), Expect = 6.5
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 447 NYTHTGRGVLSM---ANSGPNTNTSQFF 471
L M AN G + + FF
Sbjct: 192 FELMPQMNHLCMHASANVGKQGDVTVFF 219
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 7.0
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 184 DEEKEQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEE--KVKADAFNAAHYSQEEK 241
+ E L + + L+ E + L + E + A++E+ K +A +
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125
Query: 242 EQLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADA 284
L++ K N+ E + + ++E+ + A
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 26.7 bits (59), Expect = 8.5
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 131 VDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNFHHLKNNLRVLTDEEKEQL 190
V Q+ IKT + L+ + K ++ E + + +K +L E + +
Sbjct: 6 VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEIL-QESRMMI 64
Query: 191 KDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKADA 230
D + RL+ + + IL+ K + E K V
Sbjct: 65 PDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSV 104
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 26.8 bits (59), Expect = 8.5
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 129 EAVDQLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNFHHLKNNLRVLTDEEKE 188
+ L IKT + K ++ + K + K + + LK VL E +
Sbjct: 5 ATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVL-GESRM 63
Query: 189 QLKDPESRLKTVTNETRDILDTFKREYKPTEAKVEEKVKA 228
+ D RL++ + + L + + E + E A
Sbjct: 64 MIPDCHKRLESALADLKSTLAELE---ETDEKEGPEIEDA 100
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 26.0 bits (58), Expect = 9.1
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 101 YHCPVLYKVFSKHSHLVA 118
K ++K SHL A
Sbjct: 8 CDYAGCGKTYTKSSHLKA 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,366,721
Number of extensions: 435452
Number of successful extensions: 996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 964
Number of HSP's successfully gapped: 97
Length of query: 504
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 406
Effective length of database: 3,965,535
Effective search space: 1610007210
Effective search space used: 1610007210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.4 bits)