RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3664
(504 letters)
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 76.8 bits (188), Expect = 3e-17
Identities = 35/101 (34%), Positives = 52/101 (51%)
Query: 404 PMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGP 463
+ + + + + +S+ + H RGV+SMAN+GP
Sbjct: 35 NYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGP 94
Query: 464 NTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
NTN SQFFITY HLD K+TVFGK++ G++TL +EK+
Sbjct: 95 NTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP 135
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 75.1 bits (184), Expect = 1e-16
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 442 KNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+ H G+LSMAN+GPNTN SQFFIT + LDGKH VFG+++ GM+ + AIE
Sbjct: 82 ADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE 141
Query: 502 KVE 504
Sbjct: 142 AEG 144
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 74.9 bits (183), Expect = 2e-16
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 442 KNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+ N H G+LSMAN+GPNTN+SQFFIT C LDGKH VFGK++ GM+ + +E
Sbjct: 90 TDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREME 149
Query: 502 KVE 504
K
Sbjct: 150 KEG 152
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 73.7 bits (180), Expect = 5e-16
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 443 NTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG--GMDTLSAI 500
+ + H +G+LSMAN+GPNTN SQFFIT + LDGKH VFG++ + I
Sbjct: 88 DENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEI 147
Query: 501 EKVE 504
E +
Sbjct: 148 EALG 151
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 72.8 bits (178), Expect = 8e-16
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 430 KQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGK 489
+ S+ + P+ TG G+L+MAN+GP+TN SQFF+T LDGKHT+FG+
Sbjct: 72 RGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGR 131
Query: 490 MVGGMDTLSAIEKVE 504
+ G+ ++ + VE
Sbjct: 132 VCQGIGMVNRVGMVE 146
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 71.7 bits (175), Expect = 3e-15
Identities = 42/59 (71%), Positives = 52/59 (88%)
Query: 446 PNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
PN +HTGRG+LSMANSGPN+N SQFFIT+RSC +LD KHT+FG++VGG D L+A+E VE
Sbjct: 77 PNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVE 135
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 69.9 bits (170), Expect = 1e-14
Identities = 34/102 (33%), Positives = 46/102 (45%)
Query: 403 SPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG 462
T + N K S+ + HTG G+LSM+N+G
Sbjct: 50 MGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNG 109
Query: 463 PNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
PNTN+SQFFIT HLDGKHT+F ++ M + I V+
Sbjct: 110 PNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQ 151
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 68.4 bits (166), Expect = 3e-14
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 442 KNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+ H+ G+LSMANSGP+TN QFFIT C+ LDGKH VFGK++ G+ + IE
Sbjct: 92 ADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 151
Query: 502 KVE 504
V
Sbjct: 152 NVP 154
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 68.3 bits (166), Expect = 3e-14
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 442 KNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+ HTG GVLSMAN+GPNTN SQFF+ LDGKH VFG++V G+D + A+E
Sbjct: 91 PDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE 150
Query: 502 KVE 504
Sbjct: 151 SNG 153
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 67.6 bits (164), Expect = 8e-14
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 397 KVDSKLSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVL 456
KV++ K+ F +E Q + + S+ + + H G+L
Sbjct: 58 KVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFD-DENFDIKHDKEGLL 116
Query: 457 SMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGG--MDTLSAIEKVE 504
SMANSGPNTN QFFIT + C LDGK+ VFG+++ + L IE V
Sbjct: 117 SMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVS 166
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 64.5 bits (156), Expect = 7e-13
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 441 KKNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAI 500
+ + + G +SMAN+GPN+N SQFF+T LDG+H VFGK+V GMD + +
Sbjct: 84 RFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKV 143
Query: 501 EKVE 504
E +
Sbjct: 144 ENTK 147
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 64.9 bits (157), Expect = 9e-13
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 443 NTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
+ +Y H G+LSMAN+G NTN SQFFIT HLDGKH VFG+++ GM +E
Sbjct: 104 DENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILEN 163
Query: 503 VE 504
VE
Sbjct: 164 VE 165
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 63.0 bits (152), Expect = 2e-12
Identities = 33/61 (54%), Positives = 40/61 (65%)
Query: 443 NTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
+ HTG G+LSMANSGPNTN SQFF+T + LDGKH VFG++ G+D L IE
Sbjct: 83 DENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEA 142
Query: 503 V 503
Sbjct: 143 Q 143
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 62.3 bits (150), Expect = 3e-12
Identities = 29/102 (28%), Positives = 41/102 (40%)
Query: 403 SPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSG 462
+ + + + S+ + H LSMAN+G
Sbjct: 43 NGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAG 102
Query: 463 PNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
NTN SQFFIT LD KHTVFG++ GM+ + I V+
Sbjct: 103 SNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVK 144
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 62.2 bits (150), Expect = 5e-12
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 446 PNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVG--GMDTLSAIEKV 503
P +L+MAN+GP TN SQFFIT HL+ +HT+FG+++ + AI K
Sbjct: 92 PELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT 151
Query: 504 E 504
Sbjct: 152 A 152
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 59.9 bits (144), Expect = 3e-11
Identities = 32/62 (51%), Positives = 38/62 (61%)
Query: 443 NTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
+ H G GVLSMAN+GPNTN SQFFI + LDGKH VFG ++ GMD + IE
Sbjct: 84 DENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIES 143
Query: 503 VE 504
Sbjct: 144 FG 145
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 59.6 bits (143), Expect = 3e-11
Identities = 32/100 (32%), Positives = 44/100 (44%)
Query: 405 MKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANSGPN 464
+ + ++ S+ + + H+ ++SMAN GPN
Sbjct: 37 YYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPN 96
Query: 465 TNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
TN SQFFIT C LD KHTVFGK+ G + IEKV
Sbjct: 97 TNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVR 136
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 59.4 bits (143), Expect = 4e-11
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 443 NTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIEK 502
+ + H V+SMAN GPNTN SQFFIT HL+ H VFGK+V G + ++ IE
Sbjct: 93 DEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEY 152
Query: 503 VE 504
++
Sbjct: 153 LK 154
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 57.5 bits (138), Expect = 2e-10
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 442 KNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+ H G G +SMAN+GP+TN SQFFIT LDGKH VFGK++ GM + +IE
Sbjct: 88 PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 147
Query: 502 KVE 504
Sbjct: 148 LQA 150
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 53.7 bits (128), Expect = 5e-09
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 442 KNTKPNYTHTGRGVLSMANSGPNTNTSQFFITYRSCNHLDGKHTVFGKMVGGMDTLSAIE 501
+ H G G LSMAN+G +TN SQFFIT LDG+H VFGK++ GMD + IE
Sbjct: 87 ADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIE 146
Query: 502 KVE 504
+ E
Sbjct: 147 QTE 149
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 53.0 bits (126), Expect = 6e-09
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 8/112 (7%)
Query: 401 KLSPMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMAN 460
R + +K +T +
Sbjct: 29 DYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMART 88
Query: 461 SGPNTNTSQFFITYR--------SCNHLDGKHTVFGKMVGGMDTLSAIEKVE 504
P++ T+QFFI + + VF ++V GMD + I+ V
Sbjct: 89 QAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVA 140
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 50.3 bits (119), Expect = 5e-08
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 404 PMKHETFWTHSRENTNQLKPKLKRRSKQTHSMQPTILKKNTKPNYTHTGRGVLSMANS-G 462
T + ++Q +P KN N RG ++MA +
Sbjct: 36 VNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTAD 95
Query: 463 PNTNTSQFFITYRSCNHLD-----GKHTVFGKMVGGMDTLSAIEKVE 504
++ TSQFFI LD + VFGK+V GMD I +V
Sbjct: 96 KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 142
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 39.0 bits (90), Expect = 5e-05
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 42 CCVSLQPYEHPYCDK-DGNIFELEALMGYLKQYKHNPVTGKPLDVKSLIKLN 92
C +S + P IFE L Y+K ++P+T +PL ++ ++++
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 54
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 28.1 bits (63), Expect = 0.85
Identities = 15/89 (16%), Positives = 37/89 (41%)
Query: 133 QLNIKTKSFKDLLTDEPFQRKNIITLQDPNELSKFNLTNFHHLKNNLRVLTDEEKEQLKD 192
QL+IK K+ K L +E + ++ + + K + + + + D+ K L
Sbjct: 2 QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPT 61
Query: 193 PESRLKTVTNETRDILDTFKREYKPTEAK 221
+++ + L T++ ++A+
Sbjct: 62 LYEKIREFKEDLEQFLKTYQGTEDVSDAR 90
>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
[TaxId: 10298]}
Length = 615
Score = 29.0 bits (65), Expect = 1.7
Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 22/123 (17%)
Query: 227 KADAFNAAHYSQEEKEQLKDPESRLKTVTNETRDILD----TFKREYKPTEA-------- 274
+ + A + Q + +D ++ + TR++L T ++ P
Sbjct: 200 EHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKW 259
Query: 275 -KVEEKVKADAFNAAHYSQGEVSASFTSTAMVPVTENICAVVEEDLVRYSRVVKKEEKEQ 333
+V+E ++++ + +S +S +FT+ +TE V + K+ ++
Sbjct: 260 QEVDEMLRSEYGGSFRFSSDAISTTFTT----NLTE-----YPLSRVDLGDCIGKDARDA 310
Query: 334 LKD 336
+
Sbjct: 311 MDR 313
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,802,664
Number of extensions: 84364
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 33
Length of query: 504
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,185,626
Effective search space: 492034790
Effective search space used: 492034790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)