BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3667
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 189 bits (480), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/217 (47%), Positives = 131/217 (60%), Gaps = 33/217 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK +
Sbjct: 532 NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY 591
Query: 80 RTVSQLYK--EQLTKLMVTLRNTNPN---------------------FVRCIIPNHEK-R 115
+ L K + L + +L N + + +P+ K +
Sbjct: 592 NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTK 651
Query: 116 AGIPRVLG--------RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 167
G+ R +G +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGVLE
Sbjct: 652 KGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE 711
Query: 168 GIRICRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSG 204
GIRICRQGFPNRI FQ + + +N++ F G
Sbjct: 712 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDG 748
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 189 bits (480), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/217 (47%), Positives = 131/217 (60%), Gaps = 33/217 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK +
Sbjct: 532 NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY 591
Query: 80 RTVSQLYK--EQLTKLMVTLRNTNPN---------------------FVRCIIPNHEK-R 115
+ L K + L + +L N + + +P+ K +
Sbjct: 592 NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTK 651
Query: 116 AGIPRVLG--------RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 167
G+ R +G +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGVLE
Sbjct: 652 KGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE 711
Query: 168 GIRICRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSG 204
GIRICRQGFPNRI FQ + + +N++ F G
Sbjct: 712 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDG 748
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 189 bits (480), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/217 (47%), Positives = 131/217 (60%), Gaps = 33/217 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK +
Sbjct: 532 NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY 591
Query: 80 RTVSQLYK--EQLTKLMVTLRNTNPN---------------------FVRCIIPNHEK-R 115
+ L K + L + +L N + + +P+ K +
Sbjct: 592 NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTK 651
Query: 116 AGIPRVLG--------RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 167
G+ R +G +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGVLE
Sbjct: 652 KGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE 711
Query: 168 GIRICRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSG 204
GIRICRQGFPNRI FQ + + +N++ F G
Sbjct: 712 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDG 748
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 189 bits (480), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/217 (47%), Positives = 131/217 (60%), Gaps = 33/217 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK +
Sbjct: 532 NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY 591
Query: 80 RTVSQLYK--EQLTKLMVTLRNTNPN---------------------FVRCIIPNHEK-R 115
+ L K + L + +L N + + +P+ K +
Sbjct: 592 NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTK 651
Query: 116 AGIPRVLG--------RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 167
G+ R +G +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGVLE
Sbjct: 652 KGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE 711
Query: 168 GIRICRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSG 204
GIRICRQGFPNRI FQ + + +N++ F G
Sbjct: 712 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDG 748
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 132/217 (60%), Gaps = 33/217 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK +
Sbjct: 532 NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY 591
Query: 80 RTVSQLYK--EQLTKLMVTLRNTNPN-FVRCIIPNHEKRAGIPRV--------------- 121
+ L K + L + +L N + + FV + + ++ G+ ++
Sbjct: 592 NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTK 651
Query: 122 --------------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 167
L +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGVLE
Sbjct: 652 KGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE 711
Query: 168 GIRICRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSG 204
GIRICRQGFPNRI FQ + + +N++ F G
Sbjct: 712 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDG 748
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 132/217 (60%), Gaps = 33/217 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT-DFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK +
Sbjct: 532 NPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTY 591
Query: 80 RTVSQLYK--EQLTKLMVTLRNTNPN-FVRCIIPNHEKRAGIPRV--------------- 121
+ L K + L + +L N + + FV + + ++ G+ ++
Sbjct: 592 NASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTK 651
Query: 122 --------------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLE 167
L +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGVLE
Sbjct: 652 KGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE 711
Query: 168 GIRICRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSG 204
GIRICRQGFPNRI FQ + + +N++ F G
Sbjct: 712 GIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDG 748
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 114/194 (58%), Gaps = 31/194 (15%)
Query: 21 SPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK-TDFRGVADFAIVHYAGKGMF 79
+P G++ALLDEECWFPKATD+SFVEK+ Q H KF++ R ADF+++HYAGK +
Sbjct: 501 NPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDY 560
Query: 80 RTVSQLYKEQL---TKLMVTLRNTNPNFVRCIIPNHEKRAGIPRV--------------- 121
+ L K + L + I + E G+ +V
Sbjct: 561 KANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRG 620
Query: 122 ------------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
L RLM TL NTNP+FVRCI+PNHEKRAGK++ LVLDQLRCNGVLEGI
Sbjct: 621 MFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGI 680
Query: 170 RICRQGFPNRIPFQ 183
RICRQGFPNRI FQ
Sbjct: 681 RICRQGFPNRILFQ 694
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 114/197 (57%), Gaps = 34/197 (17%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKK-TDFRGV--ADFAIVH 72
+L+ PMGIM++L+EEC FPKATD +F KL +H + A F+K + +G A F+++H
Sbjct: 522 DLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIH 581
Query: 73 YAG--------------KGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIP-------- 110
YAG + TV LY++ KL+ TL N+ P
Sbjct: 582 YAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLF---ANYAGADAPIEKGKGKA 638
Query: 111 ----NHEKRAGIPRV-LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGV 165
+ + + + R L +LM LR+T+P+FVRCIIPN K G +D PLV+ QLRCNGV
Sbjct: 639 KKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGV 698
Query: 166 LEGIRICRQGFPNRIPF 182
LEGIRICR+GFPNRI +
Sbjct: 699 LEGIRICRKGFPNRILY 715
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 133 bits (335), Expect = 8e-32, Method: Composition-based stats.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 590
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 591 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 650
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 651 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 710
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 711 DFVKRYYLLAPNVPRDAEDS 730
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 590
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 591 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 650
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 651 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 710
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 711 DFVKRYYLLAPNVPRDAEDS 730
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 578
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 638
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 639 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 698
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 699 DFVKRYYLLAPNVPRDAEDS 718
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 590
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 591 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 650
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 651 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 710
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 711 DFVKRYYLLAPNVPRDAEDS 730
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 590
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 591 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 650
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 651 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 710
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 711 DFVKRYYLLAPNVPRDAEDS 730
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 578
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 638
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 639 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 698
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 699 DFVKRYYLLAPNVPRDAEDS 718
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 112/200 (56%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 700 DFVKRYYLLAPNVPRDAEDS 719
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 578
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 638
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCN VLEGIRI R+GFPNRI +
Sbjct: 639 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNAVLEGIRITRKGFPNRIIYA 698
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 699 DFVKRYYLLAPNVPRDAEDS 718
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFLTVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + + N R DS
Sbjct: 700 DFVKRYYDLAPNVPRDAEDS 719
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + + N R DS
Sbjct: 700 DFVKRYYDLAPNVPRDAEDS 719
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 578
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 638
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCN VLEGIRI R+GFPNRI +
Sbjct: 639 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNVVLEGIRITRKGFPNRIIYA 698
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + +L N R DS
Sbjct: 699 DFVKRYYLLAPNVPRDAEDS 718
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 20/177 (11%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 578
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 638
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRI 180
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI
Sbjct: 639 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRI 695
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 20/200 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 579
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFLTVAAQYKEQLA 639
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLE IRI R+GFPNRI +
Sbjct: 640 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEAIRITRKGFPNRIIYA 699
Query: 184 MSVPQPFLFRSNSVRSEFDS 203
V + + N R DS
Sbjct: 700 DFVKRYYDLAPNVPRDAEDS 719
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 18 LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH----SQHAKFKKTDFRGVADFAIVHY 73
L+ PMGI ++L+EEC FPKATD SF KL H + K K + A F++VHY
Sbjct: 522 LIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKPAKGKAEAHFSLVHY 581
Query: 74 AGKGMF--------------RTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPNHEKR---- 115
AG + TV LY++ K + L T +
Sbjct: 582 AGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFATYGGEAEGGGGKKGGKKKGS 641
Query: 116 ------AGIPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
A L +LM LR+T+P+FVRCIIPN K G ++ LVL QLRCNGVLEGI
Sbjct: 642 SFQTVSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGI 701
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 702 RICRKGFPSRVLY 714
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 121/227 (53%), Gaps = 29/227 (12%)
Query: 18 LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD--FRGVAD--FAIVH 72
L+ PMGI+++L+EEC FPKA+D SF KL +H ++ F K G A+ F + H
Sbjct: 525 LIEKPMGILSILEEECMFPKASDTSFKNKLYDNHLGKNPMFGKPKPPKAGCAEAHFCLHH 584
Query: 73 YAGKGMFRTVSQLYKEQL---TKLMVTLRNTNPNFV-------RCIIPNHEKRAGIPRV- 121
YAG + L K + ++ L+N+ V R + P +K+ G
Sbjct: 585 YAGSVSYSIAGWLDKNKDPINENVVELLQNSKEPIVKMLFTPPRILTPGGKKKKGKSAAF 644
Query: 122 ----------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRI 171
L +LM L +T+P+FVRCIIPN K G IDA LVL QLRCNGVLEGIRI
Sbjct: 645 QTISSVHKESLNKLMKNLYSTHPHFVRCIIPNELKTPGLIDAALVLHQLRCNGVLEGIRI 704
Query: 172 CRQGFPNRIPFQMSVPQPFLFRSNSVRSEFDSGVV---EVFSALCLE 215
CR+GFPNRI + + + N+V S F G V + SAL L+
Sbjct: 705 CRKGFPNRIIYSEFKQRYSILAPNAVPSGFADGKVVTDKALSALQLD 751
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 100/174 (57%), Gaps = 20/174 (11%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH--SQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL SH ++AK+++ F +F + HYAG+ M+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLITKL-HSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMY 578
Query: 80 RTVSQLYKEQ---LTKLMVTLRNTNPNFVRCII--PNHEKRAG-----------IPRVLG 123
L K + L + ++++ N V + PN RA L
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 638
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFP 177
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFP
Sbjct: 639 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFP 692
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 27/193 (13%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF +KL Q+H ++ F K +G A F +
Sbjct: 521 DLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFEL 580
Query: 71 VHYAGKGMFRTVSQLYKEQ--LTKLMVTLRNTNPN-FVRCIIPNHEKRAGIP-------- 119
HYAG + L K + + + +V L + V + E+ AG
Sbjct: 581 HHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSS 640
Query: 120 ----------RVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
L +LM L +T+P+FVRCIIPN K+ G +DA LVL QL+CNGVLEGI
Sbjct: 641 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 700
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 701 RICRKGFPSRLIY 713
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 27/193 (13%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF +KL Q+H ++ F K +G A F +
Sbjct: 516 DLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFEL 575
Query: 71 VHYAGKGMFRTVSQLYKEQ--LTKLMVTLRNTNPN-FVRCIIPNHEKRAGIP-------- 119
HYAG + L K + + + +V L + V + E+ AG
Sbjct: 576 HHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSS 635
Query: 120 ----------RVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
L +LM L +T+P+FVRCIIPN K+ G +DA LVL QL+CNGVLEGI
Sbjct: 636 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 695
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 696 RICRKGFPSRLIY 708
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 27/193 (13%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF +KL Q+H ++ F K +G A F +
Sbjct: 521 DLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFEL 580
Query: 71 VHYAGKGMFRTVSQLYKEQ--LTKLMVTLRNTNPN-FVRCIIPNHEKRAGIP-------- 119
HYAG + L K + + + +V L + V + E+ AG
Sbjct: 581 HHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSS 640
Query: 120 ----------RVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
L +LM L +T+P+FVRCIIPN K+ G +DA LVL QL+CNGVLEGI
Sbjct: 641 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 700
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 701 RICRKGFPSRLIY 713
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 27/193 (13%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF +KL Q+H ++ F K +G A F +
Sbjct: 517 DLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFEL 576
Query: 71 VHYAGKGMFRTVSQLYKEQ--LTKLMVTLRNTNPN-FVRCIIPNHEKRAGIP-------- 119
HYAG + L K + + + +V L + V + E+ AG
Sbjct: 577 HHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSS 636
Query: 120 ----------RVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
L +LM L +T+P+FVRCIIPN K+ G +DA LVL QL+CNGVLEGI
Sbjct: 637 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 696
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 697 RICRKGFPSRLIY 709
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 27/193 (13%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF +KL Q+H ++ F K +G A F +
Sbjct: 521 DLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFEL 580
Query: 71 VHYAGKGMFRTVSQLYKEQ--LTKLMVTLRNTNPN-FVRCIIPNHEKRAGIP-------- 119
HYAG + L K + + + +V L + V + E+ AG
Sbjct: 581 HHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSS 640
Query: 120 ----------RVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
L +LM L +T+P+FVRCIIPN K+ G +DA LVL QL+CNGVLEGI
Sbjct: 641 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 700
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 701 RICRKGFPSRLIY 713
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 106/196 (54%), Gaps = 32/196 (16%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF + Q+H ++ F K +G A F +
Sbjct: 522 DLIEKPMGILSILEEECMFPKADDKSFQDYSYQNHIGKNRMFTKPGKPTRPNQGHAHFEL 581
Query: 71 VHYAGKGMFRTVSQLYKEQ-------LTKLMVTLRNTNPNFVRCIIPNH----------- 112
HYAG + L K + ++ L V+ R P+
Sbjct: 582 HHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEPLVAELFRA--PDEPAGGAGGKKKK 639
Query: 113 -----EKRAGIPR-VLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVL 166
+ + + R L +LM LR TNP+FVRCIIPN EK G +DA LVL QL+CNGVL
Sbjct: 640 KSSAFQTISAVHRESLNKLMCNLRRTNPHFVRCIIPNLEKDPGLVDAELVLHQLQCNGVL 699
Query: 167 EGIRICRQGFPNRIPF 182
EGIRICR+GFP+R+ +
Sbjct: 700 EGIRICRKGFPSRLIY 715
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 28/193 (14%)
Query: 18 LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH----SQHAKFKKTDFRGVADFAIVHY 73
L+ PMGI ++L+EEC FPKATD SF L H + K K + A F++VHY
Sbjct: 525 LIEXPMGIFSILEEECMFPKATDTSFXNXLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHY 584
Query: 74 AGKGMF--------------RTVSQLYKEQLTKLMVTLRNT---------NPNFVRCIIP 110
AG + TV LY+ + L T +
Sbjct: 585 AGTVDYNISGWLEXNXDPLNETVIGLYQXSSVXTLALLFATYGGEAEGGGGKKGGKKKGS 644
Query: 111 NHEKRAGIPRV-LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
+ + + + R L LM LR+T+P+FVRCIIPN G ++ LVL QLRCNGVLEGI
Sbjct: 645 SFQTVSALFRENLNXLMANLRSTHPHFVRCIIPNETXTPGAMEHELVLHQLRCNGVLEGI 704
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 705 RICRKGFPSRVLY 717
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 28/193 (14%)
Query: 18 LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH----SQHAKFKKTDFRGVADFAIVHY 73
L+ PMGI ++L+EEC FPKATD SF L H + K K + A F++VHY
Sbjct: 522 LIEXPMGIFSILEEECMFPKATDTSFXNXLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHY 581
Query: 74 AGKGMF--------------RTVSQLYKEQLTKLMVTLRNT---------NPNFVRCIIP 110
AG + TV LY+ + L T +
Sbjct: 582 AGTVDYNISGWLEXNXDPLNETVIGLYQXSSVXTLALLFATYGGEAEGGGGKKGGKKKGS 641
Query: 111 NHEKRAGIPRV-LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGI 169
+ + + + R L LM LR+T+P+FVRCIIPN G ++ LVL QLRCNGVLEGI
Sbjct: 642 SFQTVSALFRENLNXLMANLRSTHPHFVRCIIPNETXTPGAMEHELVLHQLRCNGVLEGI 701
Query: 170 RICRQGFPNRIPF 182
RICR+GFP+R+ +
Sbjct: 702 RICRKGFPSRVLY 714
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 32/196 (16%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTD-----FRGVADFAI 70
+L+ PMGI+++L+EEC FPKA D+SF + Q+H ++ F K +G A F +
Sbjct: 523 DLIEKPMGILSILEEECMFPKADDKSFQDYSYQNHIGKNRMFTKPGKPTRPNQGHAHFEL 582
Query: 71 VHYAGKGMFRTVSQLYKEQ-------LTKLMVTLRNTNPNFVRCIIPNH----------- 112
HYAG + L K + ++ L V+ R P+
Sbjct: 583 HHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEPLVAELFRA--PDEPAGGAGGKKKK 640
Query: 113 -----EKRAGIPR-VLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVL 166
+ + + R L +LM L +T+P+FVRCIIPN K+ G +DA LVL QL+CNGVL
Sbjct: 641 KSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVL 700
Query: 167 EGIRICRQGFPNRIPF 182
EGIRICR+GFP+R+ +
Sbjct: 701 EGIRICRKGFPSRLIY 716
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 18/179 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK---TDFRGVAD--FAIVHYAGK 76
P+G+++LLDE C K+TD++F++ + + ++ + + R + D F + HYAG
Sbjct: 452 PIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGD 511
Query: 77 GMFRTVSQLYKEQLT---KLMVTLRNTNPNFVRCIIP-----NHEKR---AG--IPRVLG 123
+ L K + T L+ ++++++ V+ + P + +KR AG +
Sbjct: 512 VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPEDSKKRPETAGSQFRNAMN 571
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPF 182
L+ TL +P++VRCI N K+AG ID V Q+R G+LE +R+ R GF RI +
Sbjct: 572 ALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEY 630
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 18/179 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK---TDFRGVAD--FAIVHYAGK 76
P+G+++LLDE C K+TD++F++ + + ++ + + R + D F + HYAG
Sbjct: 452 PIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGD 511
Query: 77 GMFRTVSQLYKEQLT---KLMVTLRNTNPNFVRCIIP-----NHEKR---AG--IPRVLG 123
+ L K + T L+ ++++++ V+ + P + +KR AG +
Sbjct: 512 VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPEDSKKRPETAGSQFRNAMN 571
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPF 182
L+ TL +P++VRCI N K+AG ID V Q+R G+LE +R+ R GF RI +
Sbjct: 572 ALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEY 630
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 78.6 bits (192), Expect = 3e-15, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 44/210 (20%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHYAG 75
NL+ + MG++ LLDEEC PK +D ++ +KL +H ++ A F+K A F I H+A
Sbjct: 497 NLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKA-FIIKHFAD 555
Query: 76 KGMF-------RTVSQLYKEQL-----TKLMVTLRNTNPNFVRCIIPN------------ 111
K + + +Y+EQ+ +K L + + I P
Sbjct: 556 KVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSR 615
Query: 112 ----------------HEKRAG--IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDA 153
H+K G L LM TL T P++VRCI PN K D
Sbjct: 616 TPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDE 675
Query: 154 PLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
+ QLR GVLE IRI GFP+R +Q
Sbjct: 676 KRAVQQLRACGVLETIRISAAGFPSRWTYQ 705
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 44/210 (20%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHYAG 75
NL+ + MG++ LLDEEC PK +D ++ +KL +H ++ A F+K A F I H+A
Sbjct: 497 NLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKA-FIIKHFAD 555
Query: 76 KGMF-------RTVSQLYKEQL-----TKLMVTLRNTNPNFVRCIIP------------- 110
K + + +Y+EQ+ +K L + + I P
Sbjct: 556 KVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSR 615
Query: 111 ---------------NHEKRAG--IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDA 153
H+K G L LM TL T P++VRCI PN K D
Sbjct: 616 TPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDE 675
Query: 154 PLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
+ QLR GVLE IRI GFP+R +Q
Sbjct: 676 KRAVQQLRACGVLETIRISAAGFPSRWTYQ 705
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 44/210 (20%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHYAG 75
NL+ + MG++ LLDEEC PK +D ++ +KL +H ++ A F+K A F I H+A
Sbjct: 497 NLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKA-FIIKHFAD 555
Query: 76 KGMF-------RTVSQLYKEQL-----TKLMVTLRNTNPNFVRCIIP------------- 110
K + + +Y+EQ+ +K L + + I P
Sbjct: 556 KVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSR 615
Query: 111 ---------------NHEKRAG--IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDA 153
H+K G L LM TL T P++VRCI PN K D
Sbjct: 616 TPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDE 675
Query: 154 PLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
+ QLR GVLE IRI GFP+R +Q
Sbjct: 676 KRAVQQLRACGVLETIRISAAGFPSRWTYQ 705
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 522 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 581
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 582 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 640
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 641 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 700
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 701 QGGFPSRASFH 711
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 520 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 579
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 580 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 638
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 639 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 698
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 699 QGGFPSRASFH 709
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 532 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 591
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 592 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 650
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 651 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 710
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 711 QGGFPSRASFH 721
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 497 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 556
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 557 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 615
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 616 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 675
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 676 QGGFPSRASFH 686
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 496 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 555
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 556 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 614
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 615 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 674
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 675 QGGFPSRASFH 685
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 519 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 578
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 579 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 637
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 638 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 697
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 698 QGGFPSRASFH 708
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 496 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 555
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 556 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 614
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 615 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 674
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 675 QGGFPSRASFH 685
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 522 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 581
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 582 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 640
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 641 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 700
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 701 QGGFPSRASFH 711
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 523 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 582
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 583 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 641
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 642 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 701
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 702 QGGFPSRASFH 712
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFK---------KTDFRGVADFAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H + + R F I H+
Sbjct: 532 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHENIRDDEGFIIRHF 591
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 592 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 650
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 651 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 710
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 711 QGGFPSRASFH 721
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 522 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 581
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 582 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 640
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 641 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 700
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 701 QGGFPSRASFH 711
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 23 MGIMALLDEECWFPKATDRSFVEKLVQSHSQH------AKFKKTDFRGVAD---FAIVHY 73
+GI+ +LDEE P+ +D+ F + Q H H K K R + D F I H+
Sbjct: 523 VGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHF 582
Query: 74 AGKGMFRTVSQLYKEQLTKLMVTLRN----TNPNFVRCIIP-------NHEKRAG----- 117
AG + T +Q ++ L ++L + + F+R + + +++AG
Sbjct: 583 AGAVCYET-TQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFI 641
Query: 118 -----IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRIC 172
L L+ LR+T +F+RCI PN + + + +L QL+C+G++ + +
Sbjct: 642 SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLM 701
Query: 173 RQGFPNRIPFQ 183
+ GFP+R F
Sbjct: 702 QGGFPSRASFH 712
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 54 HAKFKKTDFRGVA--DFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPN 111
HA +KTD R +FA+ H G MF+ V+QLYK L+ NP PN
Sbjct: 320 HAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANP------WPN 373
Query: 112 HEKRAGI 118
+ +G+
Sbjct: 374 VDAHSGV 380
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 54 HAKFKKTDFRGVA--DFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPN 111
HA +KTD R +FA+ H G MF+ V+QLYK L+ NP PN
Sbjct: 316 HAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANP------WPN 369
Query: 112 HEKRAGI 118
+ +G+
Sbjct: 370 VDAHSGV 376
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 46 KLVQSHSQHAKFKKTDFRGVADFAIVHYAGKGMFRTVSQLY---KEQLTKLMVTLRNTNP 102
K ++ +A K D G+ + I KG+ R V+ LY KE L L +
Sbjct: 430 KRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQ 489
Query: 103 NFVRCIIPNHEKRAGIPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKID 152
N +R I K G+ R+L L + P + N +R G +D
Sbjct: 490 NLLRQI--EESKHRGLERLLYALGL------PGVGEVLARNLARRFGTMD 531
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 54 HAKFKKTDFRGVA--DFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPN 111
HA +KTD R +FA+ H MF+ V+QLYK L+ + NP PN
Sbjct: 320 HAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNP------WPN 373
Query: 112 HEKRAGI 118
+ +G+
Sbjct: 374 VDAHSGV 380
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 54 HAKFKKTDFRGVA--DFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPN 111
HA +KTD R +FA+ H MF+ V+QLYK L+ + NP PN
Sbjct: 318 HAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNP------WPN 371
Query: 112 HEKRAGI 118
+ +G+
Sbjct: 372 VDAHSGV 378
>pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 584
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 46 KLVQSHSQHAKFKKTDFRGVADFAIVHYAGKGMFRTVSQLY---KEQLTKLMVTLRNTNP 102
K ++ +A K D G+ + I KG+ R V+ LY KE L L +
Sbjct: 433 KRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQ 492
Query: 103 NFVRCIIPNHEKRAGIPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKID 152
N +R I K G+ R+L L + P + N +R G +D
Sbjct: 493 NLLRQI--EESKHRGLERLLYALGL------PGVGEVLARNLARRFGTMD 534
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 54 HAKFKKTDFRGVA--DFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPN 111
HA +KTD R +FA+ H MF+ V+QLYK L+ + NP PN
Sbjct: 320 HAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNP------WPN 373
Query: 112 HEKRAGI 118
+ +G+
Sbjct: 374 VDAHSGV 380
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 54 HAKFKKTDFRGVA--DFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPN 111
HA +KTD R +FA+ H MF+ V+QLYK L+ + NP PN
Sbjct: 320 HAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNP------WPN 373
Query: 112 HEKRAGI 118
+ +G+
Sbjct: 374 VDAHSGV 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,701,227
Number of Sequences: 62578
Number of extensions: 303159
Number of successful extensions: 1003
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 110
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)